Psyllid ID: psy7357
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 302 | 2.2.26 [Sep-21-2011] | |||||||
| P15505 | 1004 | Glycine dehydrogenase [de | yes | N/A | 0.996 | 0.299 | 0.657 | 1e-115 | |
| P23378 | 1020 | Glycine dehydrogenase [de | yes | N/A | 0.996 | 0.295 | 0.639 | 1e-111 | |
| Q91W43 | 1025 | Glycine dehydrogenase [de | yes | N/A | 0.996 | 0.293 | 0.636 | 1e-111 | |
| Q92Q11 | 954 | Glycine dehydrogenase [de | yes | N/A | 0.986 | 0.312 | 0.617 | 1e-100 | |
| Q89I86 | 955 | Glycine dehydrogenase [de | yes | N/A | 0.996 | 0.315 | 0.584 | 7e-99 | |
| A6U8Q3 | 954 | Glycine dehydrogenase [de | yes | N/A | 0.986 | 0.312 | 0.611 | 1e-98 | |
| A9I7K9 | 957 | Glycine dehydrogenase [de | yes | N/A | 0.996 | 0.314 | 0.580 | 7e-98 | |
| Q8UFD6 | 954 | Glycine dehydrogenase [de | yes | N/A | 0.986 | 0.312 | 0.589 | 1e-97 | |
| A6TDR5 | 957 | Glycine dehydrogenase [de | yes | N/A | 0.996 | 0.314 | 0.564 | 2e-97 | |
| A1RFY8 | 962 | Glycine dehydrogenase [de | yes | N/A | 0.996 | 0.312 | 0.585 | 6e-97 |
| >sp|P15505|GCSP_CHICK Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/330 (65%), Positives = 253/330 (76%), Gaps = 29/330 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN++ E+ P S+ + N+HPF+P DQA+GY+QL +LE DLCEITGYDKISFQPNSGA
Sbjct: 544 MKLNSSAELAPISWKEFANIHPFVPLDQAQGYQQLFKDLEKDLCEITGYDKISFQPNSGA 603
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ Y A+ HR+VCLIP SAHGTNPASAQMAGM ++P+ V K+G+ID S
Sbjct: 604 QGEYAGLAAIKAYLNAKGERHRSVCLIPRSAHGTNPASAQMAGMKIQPIEVDKNGSIDIS 663
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEE I DVC+LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 664 HLKAMVDKHKENLAAIMITYPSTNGVFEEEIGDVCDLIHKHGGQVYLDGANMNAQVGLCR 723
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK HLAP+LP HP+ I + +G
Sbjct: 724 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPTHPVIKIQTDKDACPLGT 783
Query: 236 VSAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGL 272
VSAA +GS++ILPISW YI +RLE HYK LFR R G
Sbjct: 784 VSAAPWGSSAILPISWVYIKTMGAKGLKHASEIAILNANYMAKRLEKHYKILFRGVR-GY 842
Query: 273 VAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
VAHEF++D R FKK+ANIEAVD+AKRL DY
Sbjct: 843 VAHEFILDTRPFKKTANIEAVDLAKRLQDY 872
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The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Gallus gallus (taxid: 9031) EC: 1EC: .EC: 4EC: .EC: 4EC: .EC: 2 |
| >sp|P23378|GCSP_HUMAN Glycine dehydrogenase [decarboxylating], mitochondrial OS=Homo sapiens GN=GLDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 251/330 (76%), Gaps = 29/330 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+++E+ P ++ + N+HPF+P DQA+GY+QL ELE DLCE+TGYD++ FQPNSGA
Sbjct: 560 MKLNSSSELAPITWKEFANIHPFVPLDQAQGYQQLFRELEKDLCELTGYDQVCFQPNSGA 619
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL I+ Y + HR VCLIP SAHGTNPASA MAGM ++PV V K G ID
Sbjct: 620 QGEYAGLATIRAYLNQKGEGHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDKYGNIDAV 679
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEENI+DVC+LIH+HGGQVYLDGANMNAQVG+CR
Sbjct: 680 HLKAMVDKHKENLAAIMITYPSTNGVFEENISDVCDLIHQHGGQVYLDGANMNAQVGICR 739
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGD+GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK HLAPFLP HP+ S+ + +G
Sbjct: 740 PGDFGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPNHPVISLKRNEDACPVGT 799
Query: 236 VSAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGL 272
VSAA +GS+SILPISWAYI +RLE+HY+ LFR +R G
Sbjct: 800 VSAAPWGSSSILPISWAYIKMMGGKGLKQATETAILNANYMAKRLETHYRILFRGAR-GY 858
Query: 273 VAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
V HEF++D R FKKSANIEAVD+AKRL DY
Sbjct: 859 VGHEFILDTRPFKKSANIEAVDVAKRLQDY 888
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The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q91W43|GCSP_MOUSE Glycine dehydrogenase [decarboxylating], mitochondrial OS=Mus musculus GN=Gldc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/330 (63%), Positives = 250/330 (75%), Gaps = 29/330 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+++E+ P ++ + N+HPF+P DQA+GY+QL LE DLCEITGYD++SFQPNSGA
Sbjct: 565 MKLNSSSELAPITWREFANIHPFVPLDQAQGYQQLFQGLEKDLCEITGYDRVSFQPNSGA 624
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL I+ Y + HR VCLIP SAHGTNPASA MAGM ++PV V + G ID +
Sbjct: 625 QGEYAGLATIRAYLDQKGERHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDRYGNIDVA 684
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V ++KE L+ +MITYPST GVFEENI DVC LIH+HGGQVYLDGANMNAQVG+CR
Sbjct: 685 HLKAMVDQHKENLAAIMITYPSTNGVFEENIGDVCALIHQHGGQVYLDGANMNAQVGICR 744
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGD+GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK HL+PFLP HP+ SI + +G
Sbjct: 745 PGDFGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLSPFLPSHPVISIKPTEGTWPVGT 804
Query: 236 VSAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGL 272
VSAA +GS+SILPISWAYI +RLE HY+ LFR +R G
Sbjct: 805 VSAAPWGSSSILPISWAYIKMMGGKGLKEATEIAILNANYMAKRLEKHYRVLFRGAR-GY 863
Query: 273 VAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
VAHEF++D R FKKSAN+EAVD+AKRL DY
Sbjct: 864 VAHEFILDTRPFKKSANVEAVDVAKRLQDY 893
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q92Q11|GCSP_RHIME Glycine dehydrogenase [decarboxylating] OS=Rhizobium meliloti (strain 1021) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/324 (61%), Positives = 232/324 (71%), Gaps = 26/324 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNAT EM+P ++P+ + +HPF+P DQA GY+ LI +L LC ITGYD IS QPNSGA
Sbjct: 510 MKLNATAEMLPITWPEFSEIHPFVPADQALGYQHLIEDLSQKLCAITGYDAISMQPNSGA 569
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH A HR+VCLIP SAHGTNPASAQMAGM V V V G ID
Sbjct: 570 QGEYAGLLAIRAYHIANGNEHRDVCLIPTSAHGTNPASAQMAGMKVVVVKVSDAGEIDMD 629
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
D K ++ +TLSC MITYPST GVFEEN+ +VCE++H+HGGQVYLDGANMNA VGL R
Sbjct: 630 DFRAKAEQYADTLSCCMITYPSTHGVFEENVREVCEVVHKHGGQVYLDGANMNAMVGLSR 689
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAH 240
PGD GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP HP + D GAVSAA
Sbjct: 690 PGDIGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPGHPQT--DGHEGAVSAAP 747
Query: 241 YGSASILPISWAY-----------------------IRRLESHYKTLFRSSRSGLVAHEF 277
+GSASILPISW+Y RL+ Y L++S++ G VAHE
Sbjct: 748 FGSASILPISWSYCLMMGGEGLTQATKVAILNANYVAARLKGAYDVLYKSAK-GRVAHEC 806
Query: 278 VIDVRDFKKSANIEAVDIAKRLMD 301
+ID R +SA + D+AKRL+D
Sbjct: 807 IIDTRPLAESAGVTVDDVAKRLID 830
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q89I86|GCSP_BRAJA Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium japonicum (strain USDA 110) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 190/325 (58%), Positives = 237/325 (72%), Gaps = 24/325 (7%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNATTEM+P ++P+ ++HPF P++QA+GY L LE LC+ITGYD IS QPNSGA
Sbjct: 508 MKLNATTEMMPLTWPEFGSLHPFAPREQAKGYHALFARLEKWLCDITGYDAISLQPNSGA 567
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH A+ HR +CLIP SAHGTNPASA M GM V V+ K+G +D +
Sbjct: 568 QGEYAGLLAIRGYHAARGEAHRKICLIPSSAHGTNPASAAMVGMDVVVVACEKNGDVDVN 627
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL K K+ L+ +MITYPST GVFEE+I ++C+++H HGGQVYLDGAN+NAQVGL R
Sbjct: 628 DLRAKADKHANDLAAIMITYPSTHGVFEEHIREICDIVHGHGGQVYLDGANLNAQVGLSR 687
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAH 240
PGDYG+DVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAPFLP HP + D+ +G VSAA
Sbjct: 688 PGDYGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFLPGHPATRGDAPVGPVSAAP 747
Query: 241 YGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLVAHEF 277
+GSASIL IS+ YI RL++H+ L++++R G VAHE
Sbjct: 748 FGSASILTISYIYILMMGGEGLKRATEIAILNANYIAARLDAHFPVLYKNAR-GRVAHEC 806
Query: 278 VIDVRDFKKSANIEAVDIAKRLMDY 302
++D R K ++ + DIAKRL+DY
Sbjct: 807 IVDPRALKTTSGVTVDDIAKRLIDY 831
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|A6U8Q3|GCSP_SINMW Glycine dehydrogenase [decarboxylating] OS=Sinorhizobium medicae (strain WSM419) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (921), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 198/324 (61%), Positives = 229/324 (70%), Gaps = 26/324 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNAT EM+P ++P+ + +HPF+P DQA GY LI +L LC ITGYD IS QPNSGA
Sbjct: 510 MKLNATAEMLPITWPEFSEIHPFVPADQAMGYHHLIEDLSQKLCAITGYDAISMQPNSGA 569
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH A HR+VCLIP SAHGTNPASAQMAGM V V V G I
Sbjct: 570 QGEYAGLLAIRAYHIANGNEHRDVCLIPTSAHGTNPASAQMAGMKVVVVKVSDAGEIAMD 629
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
D K ++ ETLSC MITYPST GVFEEN+ +VCE++H+HGGQVYLDGANMNA VGL R
Sbjct: 630 DFRAKAEQYAETLSCCMITYPSTHGVFEENVREVCEIVHKHGGQVYLDGANMNAMVGLSR 689
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAH 240
PGD GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAPFLP HP S GAVSAA
Sbjct: 690 PGDIGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFLPGHPESG--EHKGAVSAAP 747
Query: 241 YGSASILPISWAY-----------------------IRRLESHYKTLFRSSRSGLVAHEF 277
+GSASILPISW+Y RL+ + L++S++ G VAHE
Sbjct: 748 FGSASILPISWSYCLMMGGEGLTQATKVAILNANYVAARLKGAFDVLYKSAK-GRVAHEC 806
Query: 278 VIDVRDFKKSANIEAVDIAKRLMD 301
+ID R +SA + D+AKRL+D
Sbjct: 807 IIDTRPLAESAGVTVDDVAKRLID 830
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Sinorhizobium medicae (strain WSM419) (taxid: 366394) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|A9I7K9|GCSP_BORPD Glycine dehydrogenase [decarboxylating] OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (915), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 191/329 (58%), Positives = 232/329 (70%), Gaps = 28/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNAT EMIP ++P+ +HP+ P DQ+ GY +LI L LCEITGYD IS QPNSGA
Sbjct: 510 MKLNATAEMIPITWPEFALIHPYAPADQSAGYRELIERLSKALCEITGYDDISLQPNSGA 569
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH+A RNVCLIP SAHGTNPASAQ+AGM V V+ +G +D
Sbjct: 570 QGEYAGLLAIRGYHRANGQAQRNVCLIPASAHGTNPASAQLAGMEVVVVASDANGNVDLD 629
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL K+ + + L+ LMITYPST GVFEE+IT +C+L+H+ GGQVYLDGANMNA VG+ R
Sbjct: 630 DLRAKLTQVGDRLAALMITYPSTHGVFEESITHICDLVHQAGGQVYLDGANMNAMVGVAR 689
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP--VHPLSSI--DSSIGAV 236
PG +GSDVSHLNLHKTFCIPHGGGGPG+GP+ V+SHLAPFLP ++ + ++ IG V
Sbjct: 690 PGKFGSDVSHLNLHKTFCIPHGGGGPGVGPVAVRSHLAPFLPGVLNAQGKLGGETGIGPV 749
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
+AA YGSA ILPIS+AYI RL +Y L+ + R+G V
Sbjct: 750 AAAPYGSAGILPISYAYIALMGADGLRRATEVAILNANYVAARLRDYYPVLY-AGRNGRV 808
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHE ++DVR K S+ I A DIAKRLMDY
Sbjct: 809 AHECILDVRPLKDSSGISAEDIAKRLMDY 837
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) (taxid: 340100) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q8UFD6|GCSP_AGRT5 Glycine dehydrogenase [decarboxylating] OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 191/324 (58%), Positives = 227/324 (70%), Gaps = 26/324 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNAT EM+P ++P+ +++HPF+P +QA GY+++I +L LC +TGYD S QPNSGA
Sbjct: 510 MKLNATAEMLPITWPEFSDIHPFVPANQALGYKEMIDDLSEKLCSVTGYDAFSMQPNSGA 569
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL I+ YH A HR+VCLIP SAHGTNPASAQM GM V PV VR +G ID
Sbjct: 570 QGEYAGLLTIRNYHLANGGTHRDVCLIPTSAHGTNPASAQMVGMKVVPVKVRDNGDIDID 629
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
D K ++ E LSC MITYPST GVFEE + ++CE+ H+HGGQVYLDGANMNA VGL R
Sbjct: 630 DFRLKAEQYAENLSCCMITYPSTHGVFEETVREICEITHKHGGQVYLDGANMNAMVGLAR 689
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAH 240
PGD GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAPFLP HP + D GAVSAA
Sbjct: 690 PGDIGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFLPGHP--TTDGREGAVSAAP 747
Query: 241 YGSASILPISWAY-----------------------IRRLESHYKTLFRSSRSGLVAHEF 277
+GS SILPISW+Y RL+ Y L++S +G VAHE
Sbjct: 748 FGSPSILPISWSYCLMMGGEGLTQATKVAILNANYIAERLKGAYDVLYKSE-TGRVAHEC 806
Query: 278 VIDVRDFKKSANIEAVDIAKRLMD 301
+ID R S + D+AKRL+D
Sbjct: 807 IIDTRPLADSCGVTVDDVAKRLID 830
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|A6TDR5|GCSP_KLEP7 Glycine dehydrogenase [decarboxylating] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/328 (56%), Positives = 233/328 (71%), Gaps = 27/328 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNA EMIP ++P+ +HPF P +QA GY+Q+I +L L ++TGYD + QPNSGA
Sbjct: 514 MKLNAAAEMIPITWPEFAELHPFCPVEQAEGYQQMIAQLSDWLVKLTGYDAVCMQPNSGA 573
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH++++ HR++CLIP SAHGTNPASAQMAGM V V+ K+G ID +
Sbjct: 574 QGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLA 633
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL K ++ LSC+M+TYPST GV+EE I +VCE++H+ GGQVYLDGANMNAQVG+
Sbjct: 634 DLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITS 693
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSI---GAVS 237
PG G+DVSHLNLHKTFCIPHGGGGPGMG IGVK+HLAPF+P H + I+ + GAVS
Sbjct: 694 PGFIGADVSHLNLHKTFCIPHGGGGPGMGSIGVKAHLAPFVPGHSVVQIEGMLTRQGAVS 753
Query: 238 AAHYGSASILPISWAYIR-----------------------RLESHYKTLFRSSRSGLVA 274
AA +GSASILPISW YIR RL+ Y L+ + R G VA
Sbjct: 754 AAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLY-TGRDGRVA 812
Query: 275 HEFVIDVRDFKKSANIEAVDIAKRLMDY 302
HE ++D+R K+ I +DIAKRL+D+
Sbjct: 813 HECILDIRPLKEETGISELDIAKRLIDF 840
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|A1RFY8|GCSP_SHESW Glycine dehydrogenase [decarboxylating] OS=Shewanella sp. (strain W3-18-1) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 192/328 (58%), Positives = 232/328 (70%), Gaps = 27/328 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNA EMIP S+P+ NMHPF P DQA+GY QLI EL + L +TGYD + QPNSGA
Sbjct: 515 MKLNAAVEMIPVSWPEFANMHPFCPLDQAKGYTQLIEELSSWLVNVTGYDAVCIQPNSGA 574
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH+++ HRN+CLIP SAHGTNPASAQ+AGM V + K G +D
Sbjct: 575 QGEYAGLLAIKKYHESRGDAHRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLE 634
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL+TK + E LSC+MITYPST GV+EE+I ++C+++H+HGGQVYLDGANMNAQVGL
Sbjct: 635 DLKTKAAEVAENLSCIMITYPSTHGVYEESIREICDIVHQHGGQVYLDGANMNAQVGLTS 694
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL---SSIDSSIGAVS 237
PG G+DVSHLNLHKTF IPHGGGGPGMGPIGVKSHLAPF+ H + + + GAVS
Sbjct: 695 PGFIGADVSHLNLHKTFAIPHGGGGPGMGPIGVKSHLAPFVAGHVVVKPGRVSDNNGAVS 754
Query: 238 AAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLVA 274
AA YGSA ILPISW YI ++L HY LFR R+ VA
Sbjct: 755 AAPYGSAGILPISWMYIKLLGSNGLKKSTQTALLNANYVMKKLSEHYPVLFR-GRNDRVA 813
Query: 275 HEFVIDVRDFKKSANIEAVDIAKRLMDY 302
HE +ID+R K+++ + +DIAKRL DY
Sbjct: 814 HECIIDLRPLKEASGVTEMDIAKRLNDY 841
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Shewanella sp. (strain W3-18-1) (taxid: 351745) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 302 | ||||||
| 289724561 | 670 | glycine decarboxylase [Glossina morsitan | 1.0 | 0.450 | 0.686 | 1e-122 | |
| 195107935 | 985 | GI23575 [Drosophila mojavensis] gi|19391 | 1.0 | 0.306 | 0.680 | 1e-121 | |
| 195388752 | 985 | GJ23552 [Drosophila virilis] gi|19415112 | 1.0 | 0.306 | 0.677 | 1e-121 | |
| 195449363 | 988 | GK22634 [Drosophila willistoni] gi|19416 | 1.0 | 0.305 | 0.674 | 1e-120 | |
| 195143805 | 985 | GL23685 [Drosophila persimilis] gi|19410 | 1.0 | 0.306 | 0.677 | 1e-120 | |
| 195037176 | 985 | GH19120 [Drosophila grimshawi] gi|193894 | 1.0 | 0.306 | 0.668 | 1e-120 | |
| 24645648 | 985 | CG3999, isoform A [Drosophila melanogast | 1.0 | 0.306 | 0.671 | 1e-120 | |
| 198450985 | 985 | GA26702 [Drosophila pseudoobscura pseudo | 1.0 | 0.306 | 0.674 | 1e-120 | |
| 195330133 | 887 | GM23871 [Drosophila sechellia] gi|194120 | 1.0 | 0.340 | 0.671 | 1e-120 | |
| 194740958 | 985 | GF17458 [Drosophila ananassae] gi|190626 | 1.0 | 0.306 | 0.668 | 1e-120 |
| >gi|289724561|gb|ADD18274.1| glycine decarboxylase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/329 (68%), Positives = 260/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNATTEM+PCSF T +HPF P +QARGY + ELE DLCEITGYDKISFQPNSGA
Sbjct: 221 MKLNATTEMMPCSFRHFTEIHPFAPVEQARGYHLMFEELEHDLCEITGYDKISFQPNSGA 280
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ + HRNVCLIP+SAHGTNPASAQMAGM VEP+ + DG+ID +
Sbjct: 281 QGEYAGLRAIRSYHEHRKEGHRNVCLIPISAHGTNPASAQMAGMKVEPIRILSDGSIDMA 340
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K ++ LSC+M+TYPST GVFEE ITD+C+LIH HGGQVYLDGANMNAQVGLCR
Sbjct: 341 HLRDKASEHASNLSCVMVTYPSTMGVFEETITDICDLIHRHGGQVYLDGANMNAQVGLCR 400
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP+LP H PL S D+S G V
Sbjct: 401 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPYLPGHPVISPLESEDASFGVV 460
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL++ ++GLV
Sbjct: 461 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKEPKTGLV 520
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KK+ANIEAVD+AKRLMDY
Sbjct: 521 AHEFILDIRDLKKTANIEAVDVAKRLMDY 549
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195107935|ref|XP_001998549.1| GI23575 [Drosophila mojavensis] gi|193915143|gb|EDW14010.1| GI23575 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/329 (68%), Positives = 260/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNATTEM+PCSF T +HPF P +QA+G+ QL ELE DLCEITGYDKISFQPNSGA
Sbjct: 536 MKLNATTEMMPCSFRHFTEIHPFAPVEQAQGFHQLFSELERDLCEITGYDKISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIP+SAHGTNPASAQMAGM VEP+ + DGTID +
Sbjct: 596 QGEYAGLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSDGTIDMA 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L KV ++ LSCLMITYPST GVFEE + ++C L+H+HGGQVYLDGANMNAQVGLCR
Sbjct: 656 HLRDKVAQHANELSCLMITYPSTMGVFEETVAEICTLVHQHGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAPFLP H PL+S + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFLPGHPVVSPLASEEHSFGVV 775
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS +ILPISW+YI +RLE HYKTL+++ S LV
Sbjct: 776 SAAPFGSPAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKAENSQLV 835
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KK+ANIEAVD+AKRLMDY
Sbjct: 836 AHEFILDIRDLKKTANIEAVDVAKRLMDY 864
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195388752|ref|XP_002053043.1| GJ23552 [Drosophila virilis] gi|194151129|gb|EDW66563.1| GJ23552 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/329 (67%), Positives = 262/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+TTEMIPCSF T++HPF P +QA+G+ Q+ ELE DLCEITGYD ISFQPNSGA
Sbjct: 536 MKLNSTTEMIPCSFRHFTDIHPFAPVEQAQGFHQMFKELEKDLCEITGYDNISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIPVSAHGTNPASAQMAGM VEP+ + +G+ID +
Sbjct: 596 QGEYAGLRAIRSYHEHRNEGHRNICLIPVSAHGTNPASAQMAGMKVEPIRILSNGSIDMA 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L KV+++ LSCLMITYPST GVFEE + D+C L+H+HGGQVYLDGANMNAQVGLCR
Sbjct: 656 HLRDKVEEHAHELSCLMITYPSTMGVFEETVADICTLVHKHGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVISPLSSEELSFGVV 775
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL+++ S LV
Sbjct: 776 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEEHYKTLYKAENSQLV 835
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KKSANIEAVD+AKRLMDY
Sbjct: 836 AHEFILDIRDLKKSANIEAVDVAKRLMDY 864
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195449363|ref|XP_002072041.1| GK22634 [Drosophila willistoni] gi|194168126|gb|EDW83027.1| GK22634 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/329 (67%), Positives = 263/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+TTEM+PCSF T++HPF P +QA+G+ Q+ ELE DLCEITGYDKISFQPNSGA
Sbjct: 539 MKLNSTTEMMPCSFRHFTDIHPFAPVEQAQGFHQMFNELEQDLCEITGYDKISFQPNSGA 598
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID +
Sbjct: 599 QGEYAGLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMA 658
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ K +++ LSCLMITYPST GVFEE + D+C LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 659 HLKDKAEEHASQLSCLMITYPSTMGVFEETVADICTLIHKHGGQVYLDGANMNAQVGLCR 718
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 719 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVISPLSSEEHSFGVV 778
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL+++ S LV
Sbjct: 779 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLV 838
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KKSANIEAVD+AKRLMDY
Sbjct: 839 AHEFILDIRDLKKSANIEAVDVAKRLMDY 867
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195143805|ref|XP_002012887.1| GL23685 [Drosophila persimilis] gi|194101830|gb|EDW23873.1| GL23685 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/329 (67%), Positives = 260/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNATTEM+PCSF T++HPF P DQA+G+ Q+ ELE DLCEITGYD+ISFQPNSGA
Sbjct: 536 MKLNATTEMMPCSFRHFTDIHPFAPVDQAKGFHQMFNELERDLCEITGYDRISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ + HRN+CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID
Sbjct: 596 QGEYAGLRAIRSYHEHRSEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMG 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K +++ LSCLMITYPST GVFEE + ++C LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 656 HLRAKAEEHAHELSCLMITYPSTMGVFEETVAEICTLIHKHGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVISPLSSEEHSFGVV 775
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL++S S LV
Sbjct: 776 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKSPSSELV 835
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KKSANIEAVD+AKRLMDY
Sbjct: 836 AHEFILDIRDLKKSANIEAVDVAKRLMDY 864
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195037176|ref|XP_001990040.1| GH19120 [Drosophila grimshawi] gi|193894236|gb|EDV93102.1| GH19120 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/329 (66%), Positives = 262/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+TTEM+PCSF T++HPF P +QA+G+ Q+ ELE DLCEITGYDKISFQPNSGA
Sbjct: 536 MKLNSTTEMMPCSFRHFTDIHPFAPVEQAQGFHQMFNELEKDLCEITGYDKISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID +
Sbjct: 596 QGEYAGLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMA 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K +++ LSCLMITYPST GVFEE + D+C L+H+HGGQVYLDGANMNAQVGLCR
Sbjct: 656 HLHDKTEEHSRELSCLMITYPSTMGVFEETVADICSLVHKHGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVISPLSSEEHSFGVV 775
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL+++ S LV
Sbjct: 776 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKAENSQLV 835
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KK+ANIEAVD+AKRLMDY
Sbjct: 836 AHEFILDIRDLKKTANIEAVDVAKRLMDY 864
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24645648|ref|NP_649989.1| CG3999, isoform A [Drosophila melanogaster] gi|442618429|ref|NP_001262456.1| CG3999, isoform B [Drosophila melanogaster] gi|7299318|gb|AAF54512.1| CG3999, isoform A [Drosophila melanogaster] gi|28316874|gb|AAO39460.1| RH34107p [Drosophila melanogaster] gi|220949308|gb|ACL87197.1| CG3999-PA [synthetic construct] gi|440217293|gb|AGB95838.1| CG3999, isoform B [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/329 (67%), Positives = 262/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+TTEM+PCSF T++HPF P +QA+G+ Q+ ELE DLCEITGYD+ISFQPNSGA
Sbjct: 536 MKLNSTTEMMPCSFRHFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID +
Sbjct: 596 QGEYAGLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMA 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K +++ LSCLMITYPST GVFEE + D+C LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 656 HLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVVSPLSSEEHSFGVV 775
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL+++ S LV
Sbjct: 776 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLV 835
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KKSANIEAVD+AKRLMDY
Sbjct: 836 AHEFILDIRDLKKSANIEAVDVAKRLMDY 864
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198450985|ref|XP_002137194.1| GA26702 [Drosophila pseudoobscura pseudoobscura] gi|198131282|gb|EDY67752.1| GA26702 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/329 (67%), Positives = 260/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNATTEM+PCSF T++HPF P DQA+G+ Q+ ELE DLCEITGYD+ISFQPNSGA
Sbjct: 536 MKLNATTEMMPCSFRHFTDIHPFAPVDQAKGFHQMFNELERDLCEITGYDRISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID
Sbjct: 596 QGEYAGLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMG 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K ++ LSCLMITYPST GVFEE + ++C LIH++GGQVYLDGANMNAQVGLCR
Sbjct: 656 HLRAKAAEHAHELSCLMITYPSTMGVFEETVAEICTLIHKYGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVISPLSSEEHSFGVV 775
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL++S S LV
Sbjct: 776 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKSPSSELV 835
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KKSANIEAVD+AKRLMDY
Sbjct: 836 AHEFILDIRDLKKSANIEAVDVAKRLMDY 864
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195330133|ref|XP_002031762.1| GM23871 [Drosophila sechellia] gi|194120705|gb|EDW42748.1| GM23871 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/329 (67%), Positives = 262/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+TTEM+PCSF T++HPF P +QA+G+ Q+ ELE DLCEITGYD+ISFQPNSGA
Sbjct: 438 MKLNSTTEMMPCSFRHFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGA 497
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID +
Sbjct: 498 QGEYAGLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMA 557
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K +++ LSCLMITYPST GVFEE + D+C LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 558 HLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQVYLDGANMNAQVGLCR 617
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 618 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVVSPLSSEEHSFGVV 677
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL+++ S LV
Sbjct: 678 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKAPNSDLV 737
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KKSANIEAVD+AKRLMDY
Sbjct: 738 AHEFILDIRDLKKSANIEAVDVAKRLMDY 766
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194740958|ref|XP_001952956.1| GF17458 [Drosophila ananassae] gi|190626015|gb|EDV41539.1| GF17458 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/329 (66%), Positives = 261/329 (79%), Gaps = 27/329 (8%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+TTEM+PCSF T++HPF P +QA+G+ Q+ ELE DLCEITGYDKISFQPNSGA
Sbjct: 536 MKLNSTTEMMPCSFRHFTDIHPFAPVEQAQGFHQMFNELERDLCEITGYDKISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HR +CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID +
Sbjct: 596 QGEYAGLRAIRSYHEHRNEGHRTICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMA 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K +++ LSCLMITYPST GVFEE + D+C LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 656 HLRAKAEEHSRELSCLMITYPSTMGVFEETVADICTLIHKHGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH----PLSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK+HLAP+LP H PLSS + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVISPLSSEEHSFGVV 775
Query: 237 SAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSRSGLV 273
SAA +GS++ILPISW+YI +RLE HYKTL+++ S LV
Sbjct: 776 SAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLV 835
Query: 274 AHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
AHEF++D+RD KK+ANIEAVD+AKRLMDY
Sbjct: 836 AHEFILDIRDLKKTANIEAVDVAKRLMDY 864
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 302 | ||||||
| UNIPROTKB|E2R9Z7 | 1023 | GLDC "Uncharacterized protein" | 0.850 | 0.251 | 0.637 | 2.2e-105 | |
| UNIPROTKB|E1BJQ1 | 1020 | GLDC "Uncharacterized protein" | 0.850 | 0.251 | 0.641 | 7.3e-105 | |
| UNIPROTKB|P23378 | 1020 | GLDC "Glycine dehydrogenase [d | 0.850 | 0.251 | 0.629 | 4e-104 | |
| MGI|MGI:1341155 | 1025 | Gldc "glycine decarboxylase" [ | 0.850 | 0.250 | 0.625 | 1.1e-103 | |
| FB|FBgn0037801 | 985 | CG3999 [Drosophila melanogaste | 0.857 | 0.262 | 0.661 | 1.8e-94 | |
| WB|WBGene00020022 | 979 | R12C12.1 [Caenorhabditis elega | 0.850 | 0.262 | 0.604 | 2.6e-94 | |
| TIGR_CMR|SO_0781 | 962 | SO_0781 "glycine cleavage syst | 0.913 | 0.286 | 0.572 | 1.9e-91 | |
| UNIPROTKB|F1NX32 | 912 | GLDC "Glycine dehydrogenase [d | 0.850 | 0.281 | 0.648 | 1.5e-90 | |
| UNIPROTKB|P15505 | 1004 | GLDC "Glycine dehydrogenase [d | 0.850 | 0.255 | 0.648 | 1.5e-90 | |
| UNIPROTKB|F1NS43 | 906 | GLDC "Glycine dehydrogenase [d | 0.850 | 0.283 | 0.648 | 1.5e-90 |
| UNIPROTKB|E2R9Z7 GLDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 167/262 (63%), Positives = 201/262 (76%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+++E+ P ++ + N+HPF+P DQA+GY+QL ELE DLCE+TGYD+ISFQPNSGA
Sbjct: 563 MKLNSSSELTPITWKEFANIHPFVPLDQAQGYQQLFRELEKDLCELTGYDRISFQPNSGA 622
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL I+ Y + HR VCLIP SAHGTNPASA MAGM ++PV V K G ID +
Sbjct: 623 QGEYAGLATIRAYLDGKGEGHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDKYGNIDTA 682
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEENI DVC+LIH++GGQVYLDGANMNAQVG+CR
Sbjct: 683 HLKAMVDKHKENLAAIMITYPSTNGVFEENIGDVCDLIHQNGGQVYLDGANMNAQVGICR 742
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSI-----DSSIGA 235
PGD+GSDVSHLNLHKTFCI VK HLAPFLP HP+ S+ D +G
Sbjct: 743 PGDFGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPNHPIVSVKPSEDDRPVGT 802
Query: 236 VSAAHYGSASILPISWAYIRRL 257
VSAA +GS+SILPISWAYI+ +
Sbjct: 803 VSAAPWGSSSILPISWAYIKMM 824
|
|
| UNIPROTKB|E1BJQ1 GLDC "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 168/262 (64%), Positives = 200/262 (76%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+++E+ P ++ + N+HPF+P DQA+GY+QL ELE DLCE+TGYD+ISFQPNSGA
Sbjct: 560 MKLNSSSELTPITWKEFANIHPFVPLDQAQGYQQLFRELEKDLCELTGYDRISFQPNSGA 619
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL +I+ Y A+ HR VCLIP SAHGTNPASA MAGM ++PV V K G ID +
Sbjct: 620 QGEYAGLASIRAYLDAKGETHRTVCLIPKSAHGTNPASAHMAGMRIQPVEVDKYGNIDAA 679
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEENI DVC+LIH HGGQVYLDGANMNAQVGLCR
Sbjct: 680 HLKAMVDKHKENLAAIMITYPSTNGVFEENIGDVCDLIHLHGGQVYLDGANMNAQVGLCR 739
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGD+GSDVSHLNLHKTFCI VK HL PFLP HP+ S+ S +G
Sbjct: 740 PGDFGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLVPFLPNHPIISLKPSEDAQALGT 799
Query: 236 VSAAHYGSASILPISWAYIRRL 257
VSAA +GS+ ILPISWAYI+ +
Sbjct: 800 VSAAPWGSSCILPISWAYIKMM 821
|
|
| UNIPROTKB|P23378 GLDC "Glycine dehydrogenase [decarboxylating], mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 876 (313.4 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 165/262 (62%), Positives = 200/262 (76%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+++E+ P ++ + N+HPF+P DQA+GY+QL ELE DLCE+TGYD++ FQPNSGA
Sbjct: 560 MKLNSSSELAPITWKEFANIHPFVPLDQAQGYQQLFRELEKDLCELTGYDQVCFQPNSGA 619
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL I+ Y + HR VCLIP SAHGTNPASA MAGM ++PV V K G ID
Sbjct: 620 QGEYAGLATIRAYLNQKGEGHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDKYGNIDAV 679
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEENI+DVC+LIH+HGGQVYLDGANMNAQVG+CR
Sbjct: 680 HLKAMVDKHKENLAAIMITYPSTNGVFEENISDVCDLIHQHGGQVYLDGANMNAQVGICR 739
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGD+GSDVSHLNLHKTFCI VK HLAPFLP HP+ S+ + +G
Sbjct: 740 PGDFGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPNHPVISLKRNEDACPVGT 799
Query: 236 VSAAHYGSASILPISWAYIRRL 257
VSAA +GS+SILPISWAYI+ +
Sbjct: 800 VSAAPWGSSSILPISWAYIKMM 821
|
|
| MGI|MGI:1341155 Gldc "glycine decarboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 164/262 (62%), Positives = 199/262 (75%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+++E+ P ++ + N+HPF+P DQA+GY+QL LE DLCEITGYD++SFQPNSGA
Sbjct: 565 MKLNSSSELAPITWREFANIHPFVPLDQAQGYQQLFQGLEKDLCEITGYDRVSFQPNSGA 624
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL I+ Y + HR VCLIP SAHGTNPASA MAGM ++PV V + G ID +
Sbjct: 625 QGEYAGLATIRAYLDQKGERHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDRYGNIDVA 684
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V ++KE L+ +MITYPST GVFEENI DVC LIH+HGGQVYLDGANMNAQVG+CR
Sbjct: 685 HLKAMVDQHKENLAAIMITYPSTNGVFEENIGDVCALIHQHGGQVYLDGANMNAQVGICR 744
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGD+GSDVSHLNLHKTFCI VK HL+PFLP HP+ SI + +G
Sbjct: 745 PGDFGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLSPFLPSHPVISIKPTEGTWPVGT 804
Query: 236 VSAAHYGSASILPISWAYIRRL 257
VSAA +GS+SILPISWAYI+ +
Sbjct: 805 VSAAPWGSSSILPISWAYIKMM 826
|
|
| FB|FBgn0037801 CG3999 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 174/263 (66%), Positives = 209/263 (79%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN+TTEM+PCSF T++HPF P +QA+G+ Q+ ELE DLCEITGYD+ISFQPNSGA
Sbjct: 536 MKLNSTTEMMPCSFRHFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGA 595
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLRAI+ YH+ ++ HRN+CLIP+SAHGTNPASAQMAGM VEP+ + +G+ID +
Sbjct: 596 QGEYAGLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNGSIDMA 655
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L K +++ LSCLMITYPST GVFEE + D+C LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 656 HLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQVYLDGANMNAQVGLCR 715
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHP----LSSIDSSIGAV 236
PGDYGSDVSHLNLHKTFCI VK+HLAP+LP HP LSS + S G V
Sbjct: 716 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPVVSPLSSEEHSFGVV 775
Query: 237 SAAHYGSASILPISWAYIRRLES 259
SAA +GS++ILPISW+YI+ + S
Sbjct: 776 SAAPFGSSAILPISWSYIKLMGS 798
|
|
| WB|WBGene00020022 R12C12.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
Identities = 156/258 (60%), Positives = 188/258 (72%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNA+ E+IP ++P L+++HPF P +QA+GY ++ G+LE LCEITGYD S QPNSGA
Sbjct: 537 MKLNASAELIPITWPTLSSIHPFAPVEQAKGYSRIFGDLEKWLCEITGYDNFSLQPNSGA 596
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
GEYAGL AI+ Y + RN+CLIP SAHGTNPASAQMA M V V G I++
Sbjct: 597 NGEYAGLLAIRNYLIHKGEEQRNICLIPTSAHGTNPASAQMANMKVVVVDSDHHGNINYK 656
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL K +K L+ +M+TYPST GVFE +I DVC+ +HEHGGQVYLDGANMNAQVGLCR
Sbjct: 657 DLAAKAEKYSNQLAAIMVTYPSTHGVFESSIRDVCDKVHEHGGQVYLDGANMNAQVGLCR 716
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSIDS-SIGAVSAA 239
PGDYGSDVSHLNLHKTFCI VK HLAPFLP H + +D +G+V++A
Sbjct: 717 PGDYGSDVSHLNLHKTFCIPHGGGGPGVGPIGVKKHLAPFLPGHSVVPVDGRKVGSVASA 776
Query: 240 HYGSASILPISWAYIRRL 257
YGSASIL I+WAYIR +
Sbjct: 777 PYGSASILAITWAYIRMM 794
|
|
| TIGR_CMR|SO_0781 SO_0781 "glycine cleavage system P protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 162/283 (57%), Positives = 199/283 (70%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNA EMIP S+P+ NMHPF P DQA+GY QLI EL + L +TGYD + QPNSGA
Sbjct: 515 MKLNAAVEMIPVSWPEFANMHPFCPLDQAKGYTQLIEELSSWLVNVTGYDAVCIQPNSGA 574
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH+++ HRN+CLIP SAHGTNPASAQ+AGM V + K G +D
Sbjct: 575 QGEYAGLLAIRKYHESRGEAHRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLE 634
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL+ K + E LSC+MITYPST GV+EE + ++C ++H+HGGQVYLDGANMNAQVGL
Sbjct: 635 DLKAKAAEVAENLSCIMITYPSTHGVYEETVREICNIVHQHGGQVYLDGANMNAQVGLTS 694
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVH----PLSSIDSSIGAV 236
PG G+DVSHLNLHKTF I VK+HLAPF+ H P D++ GAV
Sbjct: 695 PGFIGADVSHLNLHKTFAIPHGGGGPGMGPIGVKAHLAPFVAGHVVVKPGRESDNN-GAV 753
Query: 237 SAAHYGSASILPISWAYIRRLESHYKTLFRSSRSGLVAHEFVI 279
SAA YGSA ILPISW YI+ L S K L +S+++ L+ +V+
Sbjct: 754 SAAPYGSAGILPISWMYIKLLGS--KGLKKSTQTALLNANYVM 794
|
|
| UNIPROTKB|F1NX32 GLDC "Glycine dehydrogenase [decarboxylating], mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 170/262 (64%), Positives = 203/262 (77%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN++ E+ P S+ + N+HPF+P DQA+GY+QL +LE DLCEITGYDKISFQPNSGA
Sbjct: 452 MKLNSSAELAPISWKEFANIHPFVPLDQAQGYQQLFKDLEKDLCEITGYDKISFQPNSGA 511
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ Y A+ HR+VCLIP SAHGTNPASAQMAGM ++P+ V K+G+ID S
Sbjct: 512 QGEYAGLAAIKAYLNAKGERHRSVCLIPRSAHGTNPASAQMAGMKIQPIEVDKNGSIDIS 571
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEE I DVC+LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 572 HLKAMVDKHKENLAAIMITYPSTNGVFEEEIGDVCDLIHKHGGQVYLDGANMNAQVGLCR 631
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGDYGSDVSHLNLHKTFCI VK HLAP+LP HP+ I + +G
Sbjct: 632 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPTHPVIKIQTDKDACPLGT 691
Query: 236 VSAAHYGSASILPISWAYIRRL 257
VSAA +GS++ILPISW YI+ +
Sbjct: 692 VSAAPWGSSAILPISWVYIKTM 713
|
|
| UNIPROTKB|P15505 GLDC "Glycine dehydrogenase [decarboxylating], mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 170/262 (64%), Positives = 203/262 (77%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN++ E+ P S+ + N+HPF+P DQA+GY+QL +LE DLCEITGYDKISFQPNSGA
Sbjct: 544 MKLNSSAELAPISWKEFANIHPFVPLDQAQGYQQLFKDLEKDLCEITGYDKISFQPNSGA 603
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ Y A+ HR+VCLIP SAHGTNPASAQMAGM ++P+ V K+G+ID S
Sbjct: 604 QGEYAGLAAIKAYLNAKGERHRSVCLIPRSAHGTNPASAQMAGMKIQPIEVDKNGSIDIS 663
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEE I DVC+LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 664 HLKAMVDKHKENLAAIMITYPSTNGVFEEEIGDVCDLIHKHGGQVYLDGANMNAQVGLCR 723
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGDYGSDVSHLNLHKTFCI VK HLAP+LP HP+ I + +G
Sbjct: 724 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPTHPVIKIQTDKDACPLGT 783
Query: 236 VSAAHYGSASILPISWAYIRRL 257
VSAA +GS++ILPISW YI+ +
Sbjct: 784 VSAAPWGSSAILPISWVYIKTM 805
|
|
| UNIPROTKB|F1NS43 GLDC "Glycine dehydrogenase [decarboxylating], mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 170/262 (64%), Positives = 203/262 (77%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN++ E+ P S+ + N+HPF+P DQA+GY+QL +LE DLCEITGYDKISFQPNSGA
Sbjct: 444 MKLNSSAELAPISWKEFANIHPFVPLDQAQGYQQLFKDLEKDLCEITGYDKISFQPNSGA 503
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ Y A+ HR+VCLIP SAHGTNPASAQMAGM ++P+ V K+G+ID S
Sbjct: 504 QGEYAGLAAIKAYLNAKGERHRSVCLIPRSAHGTNPASAQMAGMKIQPIEVDKNGSIDIS 563
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
L+ V K+KE L+ +MITYPST GVFEE I DVC+LIH+HGGQVYLDGANMNAQVGLCR
Sbjct: 564 HLKAMVDKHKENLAAIMITYPSTNGVFEEEIGDVCDLIHKHGGQVYLDGANMNAQVGLCR 623
Query: 181 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSSIDSS-----IGA 235
PGDYGSDVSHLNLHKTFCI VK HLAP+LP HP+ I + +G
Sbjct: 624 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPTHPVIKIQTDKDACPLGT 683
Query: 236 VSAAHYGSASILPISWAYIRRL 257
VSAA +GS++ILPISW YI+ +
Sbjct: 684 VSAAPWGSSAILPISWVYIKTM 705
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A5GWN4 | GCSP_SYNR3 | 1, ., 4, ., 4, ., 2 | 0.5626 | 0.9966 | 0.3145 | yes | N/A |
| Q07YC9 | GCSP_SHEFN | 1, ., 4, ., 4, ., 2 | 0.5896 | 0.9933 | 0.3118 | yes | N/A |
| A6TDR5 | GCSP_KLEP7 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| A8GIR9 | GCSP_SERP5 | 1, ., 4, ., 4, ., 2 | 0.5731 | 0.9966 | 0.3138 | yes | N/A |
| B2J427 | GCSP_NOSP7 | 1, ., 4, ., 4, ., 2 | 0.5757 | 0.9966 | 0.3074 | yes | N/A |
| B7MM89 | GCSP_ECO45 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| B1KG87 | GCSP_SHEWM | 1, ., 4, ., 4, ., 2 | 0.5823 | 0.9966 | 0.3106 | yes | N/A |
| Q1R7C8 | GCSP_ECOUT | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| Q31WG4 | GCSP_SHIBS | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| A4WE55 | GCSP_ENT38 | 1, ., 4, ., 4, ., 2 | 0.5762 | 0.9966 | 0.3145 | yes | N/A |
| Q9RTF5 | GCSP_DEIRA | 1, ., 4, ., 4, ., 2 | 0.5797 | 0.9966 | 0.3171 | yes | N/A |
| Q8DII3 | GCSP_THEEB | 1, ., 4, ., 4, ., 2 | 0.5876 | 0.9966 | 0.3155 | yes | N/A |
| A6U8Q3 | GCSP_SINMW | 1, ., 4, ., 4, ., 2 | 0.6111 | 0.9867 | 0.3123 | yes | N/A |
| Q92Q11 | GCSP_RHIME | 1, ., 4, ., 4, ., 2 | 0.6172 | 0.9867 | 0.3123 | yes | N/A |
| B7LPB7 | GCSP_ESCF3 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| Q91W43 | GCSP_MOUSE | 1, ., 4, ., 4, ., 2 | 0.6363 | 0.9966 | 0.2936 | yes | N/A |
| A3D085 | GCSP_SHEB5 | 1, ., 4, ., 4, ., 2 | 0.5896 | 0.9933 | 0.3118 | yes | N/A |
| A1RFY8 | GCSP_SHESW | 1, ., 4, ., 4, ., 2 | 0.5853 | 0.9966 | 0.3128 | yes | N/A |
| Q7WP29 | GCSP_BORBR | 1, ., 4, ., 4, ., 2 | 0.5683 | 0.9966 | 0.3155 | yes | N/A |
| A6WSL1 | GCSP_SHEB8 | 1, ., 4, ., 4, ., 2 | 0.5896 | 0.9933 | 0.3118 | yes | N/A |
| A8APB1 | GCSP_CITK8 | 1, ., 4, ., 4, ., 2 | 0.5731 | 0.9966 | 0.3145 | yes | N/A |
| O80988 | GCSP1_ARATH | 1, ., 4, ., 4, ., 2 | 0.5705 | 0.9966 | 0.2883 | yes | N/A |
| B7MZ55 | GCSP_ECO81 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| Q3IFW1 | GCSP_PSEHT | 1, ., 4, ., 4, ., 2 | 0.5823 | 0.9966 | 0.3125 | yes | N/A |
| Q3YXW7 | GCSP_SHISS | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| Q2NRF0 | GCSP_SODGM | 1, ., 4, ., 4, ., 2 | 0.5701 | 0.9966 | 0.3158 | yes | N/A |
| Q89I86 | GCSP_BRAJA | 1, ., 4, ., 4, ., 2 | 0.5846 | 0.9966 | 0.3151 | yes | N/A |
| Q54KM7 | GCSP_DICDI | 1, ., 4, ., 4, ., 2 | 0.5749 | 0.9933 | 0.3018 | yes | N/A |
| Q7W0E3 | GCSP_BORPE | 1, ., 4, ., 4, ., 2 | 0.5683 | 0.9966 | 0.3155 | yes | N/A |
| B1XEJ0 | GCSP_ECODH | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| A9L330 | GCSP_SHEB9 | 1, ., 4, ., 4, ., 2 | 0.5927 | 0.9933 | 0.3118 | yes | N/A |
| Q6LHN5 | GCSP_PHOPR | 1, ., 4, ., 4, ., 2 | 0.5889 | 0.9966 | 0.3138 | yes | N/A |
| B9JFK7 | GCSP_AGRRK | 1, ., 4, ., 4, ., 2 | 0.5864 | 0.9867 | 0.3123 | yes | N/A |
| A9I7K9 | GCSP_BORPD | 1, ., 4, ., 4, ., 2 | 0.5805 | 0.9966 | 0.3145 | yes | N/A |
| Q7W1C4 | GCSP_BORPA | 1, ., 4, ., 4, ., 2 | 0.5683 | 0.9966 | 0.3155 | yes | N/A |
| A7MR85 | GCSP_CROS8 | 1, ., 4, ., 4, ., 2 | 0.5731 | 0.9966 | 0.3145 | yes | N/A |
| A0L103 | GCSP_SHESA | 1, ., 4, ., 4, ., 2 | 0.5835 | 0.9933 | 0.3118 | yes | N/A |
| A1AF92 | GCSP_ECOK1 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| B6I736 | GCSP_ECOSE | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| P23378 | GCSP_HUMAN | 1, ., 4, ., 4, ., 2 | 0.6393 | 0.9966 | 0.2950 | yes | N/A |
| P15505 | GCSP_CHICK | 1, ., 4, ., 4, ., 2 | 0.6575 | 0.9966 | 0.2998 | yes | N/A |
| B5YQ95 | GCSP_ECO5E | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| Q8UFD6 | GCSP_AGRT5 | 1, ., 4, ., 4, ., 2 | 0.5895 | 0.9867 | 0.3123 | yes | N/A |
| A4YAD8 | GCSP_SHEPC | 1, ., 4, ., 4, ., 2 | 0.5853 | 0.9966 | 0.3128 | yes | N/A |
| B7LF89 | GCSP_ECO55 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| Q0TDU9 | GCSP_ECOL5 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| C5A0H5 | GCSP_ECOBW | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
| B7UHV1 | GCSP_ECO27 | 1, ., 4, ., 4, ., 2 | 0.5640 | 0.9966 | 0.3145 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 302 | |||
| PRK05367 | 954 | PRK05367, PRK05367, glycine dehydrogenase; Provisi | 0.0 | |
| COG1003 | 496 | COG1003, GcvP, Glycine cleavage system protein P ( | 1e-171 | |
| PLN02414 | 993 | PLN02414, PLN02414, glycine dehydrogenase (decarbo | 1e-164 | |
| TIGR00461 | 939 | TIGR00461, gcvP, glycine dehydrogenase (decarboxyl | 1e-160 | |
| PRK12566 | 954 | PRK12566, PRK12566, glycine dehydrogenase; Provisi | 1e-142 | |
| PRK04366 | 481 | PRK04366, PRK04366, glycine dehydrogenase subunit | 1e-109 | |
| cd00613 | 398 | cd00613, GDC-P, Glycine cleavage system P-protein, | 1e-106 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-09 | |
| COG0403 | 450 | COG0403, GcvP, Glycine cleavage system protein P ( | 5e-07 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 1e-06 | |
| PRK00451 | 447 | PRK00451, PRK00451, glycine dehydrogenase subunit | 4e-06 | |
| COG2008 | 342 | COG2008, GLY1, Threonine aldolase [Amino acid tran | 5e-06 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 2e-05 | |
| cd06502 | 338 | cd06502, TA_like, Low-specificity threonine aldola | 5e-04 | |
| pfam02347 | 429 | pfam02347, GDC-P, Glycine cleavage system P-protei | 0.002 |
| >gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 600 bits (1550), Expect = 0.0
Identities = 196/327 (59%), Positives = 238/327 (72%), Gaps = 26/327 (7%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNA EMIP ++P+ N+HPF P +QA GY +LI +LE L EITGYD +S QPN+GA
Sbjct: 509 MKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDAVSLQPNAGA 568
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH+++ HR+VCLIP SAHGTNPASA MAGM V V+ ++G ID
Sbjct: 569 QGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLD 628
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL K +++ + L+ +MITYPST GVFEE I ++CE++HEHGGQVYLDGANMNAQVGL R
Sbjct: 629 DLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLAR 688
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSI--DSSIGAVSA 238
PGD G+DVSHLNLHKTFCIPHGGGGPG+GPIGVK+HLAPFLP HP+ ++ IGAVSA
Sbjct: 689 PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSA 748
Query: 239 AHYGSASILPISWAYIR-----------------------RLESHYKTLFRSSRSGLVAH 275
A +GSASILPISW YIR RL+ HY L+ +G VAH
Sbjct: 749 APFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYT-GANGRVAH 807
Query: 276 EFVIDVRDFKKSANIEAVDIAKRLMDY 302
E ++D+R K+S I DIAKRL+DY
Sbjct: 808 ECILDLRPLKESTGITVDDIAKRLIDY 834
|
Length = 954 |
| >gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 484 bits (1247), Expect = e-171
Identities = 178/334 (53%), Positives = 218/334 (65%), Gaps = 37/334 (11%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLN EM P ++P+ N+HPF P++Q +GY +LI EL+ L EITG D +S QPN+GA
Sbjct: 76 MKLNPKAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQEWLKEITGMDAVSLQPNAGA 135
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH+++ HRN+CLIP SAHGTNPASA MAG V V ++G +D
Sbjct: 136 QGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLD 195
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL K + N L+ LMIT PST GVFEE+I ++CE++HE GGQVY DGAN+NA VGL R
Sbjct: 196 DLRAKAEDN---LAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLAR 252
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV---------HPLSSIDS 231
PGD G DV HLNLHKTFCIPHGGGGPG GP+GVK+HLAPFLP + L
Sbjct: 253 PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGK 312
Query: 232 SIGAVSAAHYGSASILPISWAYIR-----------------------RLESHYKTLFRSS 268
VSAA YGSASILPI+WAYIR RL+ +Y +
Sbjct: 313 KSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGE 372
Query: 269 RSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
VAHE ++D R KK + A+D+AKRL+DY
Sbjct: 373 N--RVAHECILDARPLKKETGVRALDVAKRLLDY 404
|
Length = 496 |
| >gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 481 bits (1240), Expect = e-164
Identities = 185/333 (55%), Positives = 230/333 (69%), Gaps = 32/333 (9%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNATTEM+P ++P+ N+HPF P DQA+GY+++ +L LCEITG+D S QPN+GA
Sbjct: 535 MKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITGFDSFSLQPNAGA 594
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
GEYAGL I+ YH ++ HHRNVC+IPVSAHGTNPASA M GM + V G I+
Sbjct: 595 AGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIE 654
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
+L + +K+ L+ LM+TYPST GV+EE I ++C++IH++GGQVY+DGANMNAQVGL
Sbjct: 655 ELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS 714
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDS--------S 232
PG G+DV HLNLHKTFCIPHGGGGPGMGPIGVK HLAPFLP HP+
Sbjct: 715 PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQP 774
Query: 233 IGAVSAAHYGSASILPISWAYI-----------------------RRLESHYKTLFRSSR 269
+G +SAA +GSA ILPIS+ YI +RLE HY LFR +
Sbjct: 775 LGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFR-GK 833
Query: 270 SGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
+G AHEF+ID+R FK +A IE D+AKRLMDY
Sbjct: 834 NGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDY 866
|
Length = 993 |
| >gnl|CDD|129553 TIGR00461, gcvP, glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 470 bits (1210), Expect = e-160
Identities = 193/331 (58%), Positives = 234/331 (70%), Gaps = 30/331 (9%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNAT EM+P ++P+ +N+HPF P +Q GY++LI +LE LC ITG+D IS QPNSGA
Sbjct: 497 MKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNSGA 556
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGLR I+ YH+++ +HRN+CLIPVSAHGTNPASA MAGM V PV+ +DG ID
Sbjct: 557 QGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLV 616
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL+ K +++ + L+ +M+TYPST GVFE I C+++H GGQVYLDGANMNAQVGL
Sbjct: 617 DLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS 676
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSI------DSSIG 234
PGD G+DV HLNLHKTFCIPHGGGGPGMGPIGVKSHL PFLP H + S+ SIG
Sbjct: 677 PGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIG 736
Query: 235 AVSAAHYGSASILPISWAYIR-----------------------RLESHYKTLFRSSRSG 271
+VSAA YGSASILPISW YI+ RL+ HY LF
Sbjct: 737 SVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHYPILFV-GTLK 795
Query: 272 LVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
VAHE ++D+R K IEA+D+AKRL DY
Sbjct: 796 HVAHECILDLRPLKAKTGIEAIDVAKRLQDY 826
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment [Energy metabolism, Amino acids and amines]. Length = 939 |
| >gnl|CDD|171585 PRK12566, PRK12566, glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 425 bits (1093), Expect = e-142
Identities = 187/327 (57%), Positives = 229/327 (70%), Gaps = 26/327 (7%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MKLNAT+EMIP ++P+ +HPF P++QA GY +I ELE LC ITG+D I QPNSGA
Sbjct: 510 MKLNATSEMIPITWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAITGFDAICMQPNSGA 569
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
QGEYAGL AI+ YH+++ R++CLIP SAHGTNPASAQMAGM V V DG +D
Sbjct: 570 QGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLD 629
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DL+ K + LSCLMITYPST GV+EE I ++CE++H+HGGQVY+DGAN+NAQVGL R
Sbjct: 630 DLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLAR 689
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL---PVHPLSSIDSSIGAVS 237
P D G+DVSH+NLHKTFCIPHGGGGPGMGPIGV++HLAPF+ PV P+ D + GAVS
Sbjct: 690 PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVS 749
Query: 238 AAHYGSASILPISWAYI----------------------RRLESHYKTLFRSSRSGLVAH 275
AA +GSASILPISW YI +L + L+R R+ VAH
Sbjct: 750 AAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGGAFPVLYR-GRNERVAH 808
Query: 276 EFVIDVRDFKKSANIEAVDIAKRLMDY 302
E ++D+R K I D+AKRLMDY
Sbjct: 809 ECILDLRPLKAQTGISEEDVAKRLMDY 835
|
Length = 954 |
| >gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = e-109
Identities = 137/337 (40%), Positives = 185/337 (54%), Gaps = 46/337 (13%)
Query: 1 MKLN--ATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNS 58
MK N ++ P +HP P++ +G +L+ EL+ L EITG D ++ QP +
Sbjct: 80 MKYNPKINEKV--ARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAA 137
Query: 59 GAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTID 118
GA GE GL I+ YH+A+ R ++P SAHGTNPASA MAG V + +DG +D
Sbjct: 138 GAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVD 197
Query: 119 FSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL 178
L+ V ++T + LM+T P+T G+FE NI ++ E++HE GG +Y DGAN+NA +G
Sbjct: 198 LEALKAAV--GEDT-AALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGK 254
Query: 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV----------HPLSS 228
RPGD G DV HLNLHKTF PHGGGGPG GP+GVK LAPFLPV
Sbjct: 255 ARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYD 314
Query: 229 IDSSIGAVSAAHYGSASILPISWAYIR-----------------------RLESHYKTLF 265
SIG V A YG+ +L ++AYIR RL+ Y +
Sbjct: 315 RPKSIGRVRA-FYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLPY 373
Query: 266 RSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
HEFV+ + K++ + +DIAKRL+DY
Sbjct: 374 DRPCM----HEFVLSGKKLKET-GVRTLDIAKRLLDY 405
|
Length = 481 |
| >gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Score = 314 bits (808), Expect = e-106
Identities = 110/351 (31%), Positives = 155/351 (44%), Gaps = 66/351 (18%)
Query: 1 MKLNATTEMIPCSFP-QLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDK--ISFQPN 57
K N + + + + ++G Q + EL+T LCE+TG D S Q
Sbjct: 30 YKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDE 89
Query: 58 SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMA----GMSVEPVSVRK 113
+ A E AGL AI+ YH RN L+P SAH TNPA A+ G+ V V +
Sbjct: 90 ATAAAEAAGLAAIRAYH------KRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE 143
Query: 114 DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMN 173
GT+D L+ +V + ++ LM+ YP+T GVFE+ I ++ ++ H G VY+DG N+N
Sbjct: 144 GGTVDLEALKEEVSEE---VAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLN 200
Query: 174 AQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSI 233
GL PG+YG+D+ NL KT +PHGGGGPG G VK L FLP + +
Sbjct: 201 LT-GLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAE 258
Query: 234 G-------------------AVSAAHYGSASILPISWAYIR------------------- 255
G A S G A + ++ YI
Sbjct: 259 GNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNAN 318
Query: 256 ----RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
RL+ L +G HEFV+ + I A D+AK L+D
Sbjct: 319 YLAKRLKEVGGVLP---FNGPFFHEFVLRLPPL---YGIRAEDLAKALIDG 363
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 38 ELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95
ELE L + G DK F P SG A L A+ ++ + HG+
Sbjct: 4 ELEEKLARLLQPGNDKAVFVP-SGTGANEAALLALLGPGD--------EVIVDANGHGSR 54
Query: 96 PASAQMAGMSVEPVSVRKD----GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENI 151
A +PV V D G +D + LE K K ++ ++IT +T G +
Sbjct: 55 YWVAAELAG-AKPVPVPVDDAGYGGLDVAILEEL--KAKPNVALIVITPNTTSGGVLVPL 111
Query: 152 TDVCELIHEHGGQVYLDGANMNAQVG--LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMG 209
++ ++ E+G + +D A+ + G+DV +LHK GG G G
Sbjct: 112 KEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNL------GGEGGG 165
Query: 210 PIGVK 214
+ VK
Sbjct: 166 VVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 116 TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175
+D DL+ + + +++ YP+TFG+ EE++ + E H G V + A+ A
Sbjct: 194 VVDADDLDDLESADDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIV-AADPLAL 252
Query: 176 VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMG 209
L PG++G+D+ + + F +P G GGP G
Sbjct: 253 GLLKPPGEFGADIVVGSAQR-FGVPMGFGGPHAG 285
|
Length = 450 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 23/196 (11%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRA-IQCYHQAQDAHHRNVC 85
D+ G + + LE + E+ G + F P SG L A + + ++
Sbjct: 25 DEVYGGDPTVNRLEDRVAELFGKEAALFVP-SGTMANQLALMAHCRRGDEVICGEPAHIY 83
Query: 86 LIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVK------KNKETLSCLMIT 139
T A++ G P+ + G +D DLE ++ L L T
Sbjct: 84 F-----DETG-GHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENT 137
Query: 140 YPSTFG--VFEENITDVCELIHEHGGQVYLDGANM-NAQVGL-CRPGDYGSDVSHLNLHK 195
+ S G V E + ++ + EHG ++LDGA + NA V L + S +
Sbjct: 138 HNSAGGQVVSLEELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSV---- 193
Query: 196 TFCIPHGGGGPGMGPI 211
+ + G G P +G +
Sbjct: 194 SMSLSKGLGAP-VGSV 208
|
Length = 288 |
| >gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 4e-06
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 25/122 (20%)
Query: 102 AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEH 161
G+ V V +DG D LE V + +T + +++ YP+ FGV E+ + ++ E+ H
Sbjct: 178 QGIEVVEVPY-EDGVTDLEALEAAV--DDDT-AAVVVQYPNFFGVIED-LEEIAEIAHAG 232
Query: 162 GGQVYLDGANMNAQVGLCRPGDYGSDV---------SHLNLHKTFCIPHGGGGPGMGPIG 212
G + G + + L PG+YG+D+ L+ GGP +G
Sbjct: 233 GALFIV-GVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSF----------GGPYLGFFA 281
Query: 213 VK 214
+
Sbjct: 282 TR 283
|
Length = 447 |
| >gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 28/198 (14%)
Query: 24 IPQDQARGYE--QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAI----QCYHQAQ 77
Y LE + E+ G + F P SG Q L A + +
Sbjct: 23 ANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVP-SGTQANQLALAAHCQPGESVICHE 81
Query: 78 DAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNK----ETL 133
AH + A G P+ DG + D+E ++ + T
Sbjct: 82 TAH--------IYTDECG-APEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTP 132
Query: 134 SCLMITYPSTFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQVGLCRP-GDYGSDVS 189
++ + G + + + + EHG +++DGA + NA V L S V
Sbjct: 133 LAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVD 192
Query: 190 HLNLHKTFCIPHGGGGPG 207
+ +FC+ GGG P
Sbjct: 193 SV----SFCLTKGGGAPV 206
|
Length = 342 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 92 HGTNPASAQMA----GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF 147
H +N Q G V + + DG +D LE + + ++ ++ + G
Sbjct: 121 HHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVS--NVTGT- 177
Query: 148 EENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGG 204
+ ++ EL HEHG V +D A A + G D + HK P G G
Sbjct: 178 VNPVKEIAELAHEHGALVLVDAAQ-AAGHLPIDVQELGCDFLAFSGHKWLLGPTGIG 233
|
Length = 405 |
| >gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 27/193 (13%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAI-QCYHQA---QDAHHR 82
D G + +LE E+ G + F P SG L A Q + AH
Sbjct: 25 DDVYGEDPTTAKLEARAAELFGKEAALFVP-SGTAANQLALAAHTQPGGSVICHETAH-- 81
Query: 83 NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKN------KETLSCL 136
+ A ++G+ + PV ++G + DLE ++ +L L
Sbjct: 82 ------IYTDEAG-APEFLSGVKLLPVP-GENGKLTPEDLEAAIRPRDDIHFPPPSLVSL 133
Query: 137 MITYPSTFGVFEENITDVCELIHEHGGQVYLDGANM-NAQVGL-CRPGDYGSDVSHLNLH 194
T + + + L E+G ++LDGA + NA L Y S V +
Sbjct: 134 ENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSV--- 190
Query: 195 KTFCIPHGGGGPG 207
+FC+ GGG P
Sbjct: 191 -SFCLSKGGGAPV 202
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. Length = 338 |
| >gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 136 LMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHK 195
+++ YP+T G E+ ++ E+ H+HG V + A++ A L PG++G+D+ + +
Sbjct: 201 VLVQYPNTEGRIED-YKELIEIAHQHGSLVVV-AADLLALTILKPPGEFGADIV-VGSAQ 257
Query: 196 TFCIPHGGGGPGMGPIGVKSHLAPFLP 222
F +P G GGP G VK L +P
Sbjct: 258 RFGVPMGYGGPHAGFFAVKEELKRKMP 284
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Length = 429 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 302 | |||
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 100.0 | |
| KOG2040|consensus | 1001 | 100.0 | ||
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 100.0 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 100.0 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 100.0 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 100.0 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 100.0 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 100.0 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 100.0 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 100.0 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 100.0 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.96 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.96 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.96 | |
| KOG2040|consensus | 1001 | 99.95 | ||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.94 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.92 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.91 | |
| PLN02651 | 364 | cysteine desulfurase | 99.89 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.88 | |
| KOG2467|consensus | 477 | 99.88 | ||
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.87 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.87 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.87 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.87 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.86 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.86 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.86 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.86 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.86 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.86 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.86 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.86 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.85 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.85 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.84 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.84 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.84 | |
| KOG1549|consensus | 428 | 99.84 | ||
| KOG0257|consensus | 420 | 99.84 | ||
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.84 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.83 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.83 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.83 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.83 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.83 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.83 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.82 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.82 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.82 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.82 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.82 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.82 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.82 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.81 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.81 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.8 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.79 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.79 | |
| KOG2862|consensus | 385 | 99.79 | ||
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.79 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.78 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.78 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.78 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.77 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.77 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.77 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.77 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.77 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.77 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.76 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.76 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.76 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.76 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.76 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.75 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.75 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.75 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.75 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.75 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.75 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.75 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.75 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.75 | |
| PLN02263 | 470 | serine decarboxylase | 99.75 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.75 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.75 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.75 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.74 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.74 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.74 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.74 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.74 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.74 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.74 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.74 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.74 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.74 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.74 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.74 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.74 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.74 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.73 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.73 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.73 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.73 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.73 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.73 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.73 | |
| PLN02721 | 353 | threonine aldolase | 99.73 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.73 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.73 | |
| PRK07324 | 373 | transaminase; Validated | 99.73 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.73 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.73 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.73 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.72 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.72 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.72 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.72 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.72 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.72 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.72 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.72 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.72 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.71 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.71 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.71 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.71 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.71 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.71 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.71 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.71 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.71 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.71 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.71 | |
| PLN02368 | 407 | alanine transaminase | 99.71 | |
| KOG0259|consensus | 447 | 99.71 | ||
| PRK07682 | 378 | hypothetical protein; Validated | 99.71 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.71 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.7 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.7 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.7 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.7 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.7 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.7 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.7 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.7 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.7 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.69 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.69 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.69 | |
| PLN02187 | 462 | rooty/superroot1 | 99.69 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.69 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.69 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.69 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.69 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.69 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.69 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.69 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.69 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.68 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.68 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.67 | |
| PLN02656 | 409 | tyrosine transaminase | 99.67 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.67 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.67 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.67 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.67 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.67 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.67 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.67 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.66 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.66 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.66 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.66 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.66 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.66 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.66 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.65 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.65 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.65 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.65 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.65 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.65 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.64 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.64 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.64 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.64 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.64 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.63 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.63 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.63 | |
| PLN02231 | 534 | alanine transaminase | 99.63 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.63 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.63 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.63 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.63 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.62 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.62 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.62 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.62 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.62 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.62 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.62 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.62 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.62 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.62 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.61 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.61 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.61 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.6 | |
| PLN02397 | 423 | aspartate transaminase | 99.6 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.6 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.6 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.6 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.6 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.6 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.6 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.59 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.59 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.59 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.58 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.58 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.57 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.56 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.56 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.56 | |
| KOG0053|consensus | 409 | 99.56 | ||
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.56 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.55 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.55 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.55 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.55 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.55 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.54 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.53 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.53 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.53 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.53 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.53 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.52 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.52 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.51 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.51 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.51 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.5 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.49 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.49 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.49 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.48 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.48 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.48 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.47 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.47 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.46 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.46 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.44 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.44 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.43 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.42 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.42 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.41 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.41 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.4 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.4 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.38 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.37 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.36 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.34 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.34 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.32 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.32 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.32 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.31 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.29 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.29 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.28 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.28 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.27 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.26 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.24 | |
| KOG0633|consensus | 375 | 99.24 | ||
| PRK07505 | 402 | hypothetical protein; Provisional | 99.24 | |
| KOG1368|consensus | 384 | 99.23 | ||
| KOG0256|consensus | 471 | 99.23 | ||
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.22 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.22 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.21 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.19 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.19 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.18 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.14 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.14 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.13 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.13 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.11 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.1 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.1 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.09 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.09 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.08 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.08 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.07 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.06 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.06 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.05 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.05 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.05 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.04 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.04 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.04 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.03 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.02 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.02 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.02 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.01 | |
| KOG0629|consensus | 510 | 99.0 | ||
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.0 | |
| KOG1383|consensus | 491 | 99.0 | ||
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.99 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.99 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.98 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.98 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.97 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.97 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.96 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 98.96 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 98.95 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 98.94 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.93 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 98.92 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 98.92 | |
| PRK06105 | 460 | aminotransferase; Provisional | 98.91 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 98.91 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.91 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.9 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.9 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 98.9 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 98.89 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 98.88 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 98.87 | |
| KOG1360|consensus | 570 | 98.87 | ||
| PRK06149 | 972 | hypothetical protein; Provisional | 98.85 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.85 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 98.84 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 98.83 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.81 | |
| KOG1402|consensus | 427 | 98.78 | ||
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.77 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.76 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 98.75 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.74 | |
| KOG1404|consensus | 442 | 98.74 | ||
| KOG0258|consensus | 475 | 98.74 | ||
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.71 | |
| KOG1357|consensus | 519 | 98.67 | ||
| KOG0634|consensus | 472 | 98.66 | ||
| KOG1401|consensus | 433 | 98.65 | ||
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.65 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.61 | |
| KOG1359|consensus | 417 | 98.57 | ||
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 98.52 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.48 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.45 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 98.44 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.42 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.42 | |
| KOG0628|consensus | 511 | 98.34 | ||
| KOG3846|consensus | 465 | 97.81 | ||
| KOG1358|consensus | 467 | 97.43 | ||
| KOG1411|consensus | 427 | 97.36 | ||
| KOG1412|consensus | 410 | 97.36 | ||
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.44 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 95.64 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 95.22 | |
| KOG1403|consensus | 452 | 94.74 | ||
| KOG3843|consensus | 432 | 94.33 | ||
| KOG1405|consensus | 484 | 91.87 |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-71 Score=508.23 Aligned_cols=296 Identities=59% Similarity=1.028 Sum_probs=278.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||++++.++.+|||...|||||++..||.++++.++|++|++++|+|.+.+||.+||++|++.++++++|++.+|+.
T Consensus 76 MK~Np~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~ 155 (496)
T COG1003 76 MKLNPKAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG 155 (496)
T ss_pred cccCchhhcccccccchhhcCCCCChHHHHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
.|++||||+++||+|++++.+.|++|+.|+++++|.+|+++|++++. ++++++|++|||+.|+++++|.+|++++|+
T Consensus 156 ~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~---~~~AalMiTnPsT~GvFE~~I~ei~~ivH~ 232 (496)
T COG1003 156 HRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAE---DNLAALMITNPSTLGVFEEDIREICEIVHE 232 (496)
T ss_pred cCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhc---cceeEEEeccCcccccchhhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 899999999999999998899999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc----ccC------CC
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP----LSS------ID 230 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~----~~~------~~ 230 (302)
+|++|++|+||.+++.++.+||++|+||++.++||||++|||+||||.|.+.+++++++++|+++ .+. ..
T Consensus 233 ~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~ 312 (496)
T COG1003 233 AGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGK 312 (496)
T ss_pred cCCEEEecCcchhhhhccccccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999953 322 12
Q ss_pred CcchhhhHHHHhhHhhHHHHHHHHH-----------------------HHhcccccccccCCCcceeEEEEEEecccccc
Q psy7357 231 SSIGAVSAAHYGSASILPISWAYIR-----------------------RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKS 287 (302)
Q Consensus 231 ~~l~~~~a~~~~~~~~~~~~~~y~~-----------------------~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~ 287 (302)
.+.+.++ ++|++++++.++|.|++ +|++.|+++|.+. ..|.|||++|.+++|++
T Consensus 313 ~s~g~~~-a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~--~~~~HE~ild~r~l~~~ 389 (496)
T COG1003 313 KSIGVSA-APYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGE--NRVAHECILDARPLKKE 389 (496)
T ss_pred ccceeec-cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCC--CcceeEEEeechHhHhh
Confidence 3445555 79999999999998877 6767899999764 37899999999999999
Q ss_pred CCCCHHHHHHHhhcC
Q psy7357 288 ANIEAVDIAKRLMDY 302 (302)
Q Consensus 288 ~g~~~~~~~~~l~~~ 302 (302)
+|+++.||+|||+||
T Consensus 390 ~Gv~~~DvAKrLlD~ 404 (496)
T COG1003 390 TGVRALDVAKRLLDY 404 (496)
T ss_pred cCCcHHHHHHHHHhc
Confidence 999999999999997
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=452.49 Aligned_cols=301 Identities=71% Similarity=1.224 Sum_probs=289.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
||.|.......+.+|+|++.|||+|.|..||..|++.+++.+||+++|.|...++|+||+++|++.++++|+|+..+|++
T Consensus 549 MKLNsttEmmPiTwp~fanIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~ 628 (1001)
T KOG2040|consen 549 MKLNSTTEMMPITWPEFANIHPFAPVEQAQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEG 628 (1001)
T ss_pred eeccccceeccccchhhccCCCCCchHHHhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
.++..++|-++||+++++++++|++|+.|.++.+|.+|+.+|++..++|+++.+++|+++|++.|+++++|++++++.|+
T Consensus 629 hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHe 708 (1001)
T KOG2040|consen 629 HRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHE 708 (1001)
T ss_pred cceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc-----CCCCcchh
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS-----SIDSSIGA 235 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~-----~~~~~l~~ 235 (302)
||..|++|+|+..++.++.+||++|+||.+.++||||++|||+||||+|.|.+++++++++|+..|- +...+++.
T Consensus 709 hGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gs 788 (1001)
T KOG2040|consen 709 HGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGS 788 (1001)
T ss_pred cCCEEEecCCCccceecccCCccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999997663 24457899
Q ss_pred hhHHHHhhHhhHHHHHHHHH-----------------------HHhcccccccccCCCcceeEEEEEEeccccccCCCCH
Q psy7357 236 VSAAHYGSASILPISWAYIR-----------------------RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEA 292 (302)
Q Consensus 236 ~~a~~~~~~~~~~~~~~y~~-----------------------~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~ 292 (302)
++|+.|++.+++..+|+|++ ||+..++++|.+.. .+|-|||++|+++||+..|+++
T Consensus 789 VsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~-~~vaHEFIlD~r~fK~~agiea 867 (1001)
T KOG2040|consen 789 VSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHYKILFRGEN-GLVAHEFILDLRPFKKTAGIEA 867 (1001)
T ss_pred eeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhccceeEecCC-cceeeeeeeechhhccccCCcH
Confidence 99999999999999999988 78788999999998 7999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy7357 293 VDIAKRLMDY 302 (302)
Q Consensus 293 ~~~~~~l~~~ 302 (302)
.|++|||+||
T Consensus 868 vDvAKRL~DY 877 (1001)
T KOG2040|consen 868 VDVAKRLMDY 877 (1001)
T ss_pred HHHHHHHHhc
Confidence 9999999998
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=473.16 Aligned_cols=301 Identities=58% Similarity=1.013 Sum_probs=269.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
||+||.+.+..++|+||..||||||++++||++|+++|+|+++|+++|||.+++++++||+||+++++++|.|++.+|+.
T Consensus 497 mk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~ 576 (939)
T TIGR00461 497 MKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEN 576 (939)
T ss_pred CccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999998999999669999997799999999999999999999999999999999999988999999999888866
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++|++|...||+++.++++.|++++.+|++++|.+|+++|++++++++++|++|++++||++|.+++|+++|+++||+
T Consensus 577 ~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~ 656 (939)
T TIGR00461 577 HRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHS 656 (939)
T ss_pred CCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHH
Confidence 78899999999999999999999999999999899999999999998666799999999999899998569999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------------
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------------ 228 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------------ 228 (302)
+|+++++|++|+.++..+.+|+++|+|+++++.||||++|||+||||+|++++++++.+++||+.+++
T Consensus 657 ~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Ig 736 (939)
T TIGR00461 657 FGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIG 736 (939)
T ss_pred cCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccc
Confidence 99999999999999998889999999999999999999999999999999999999999999998753
Q ss_pred ------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHhcccccccccCCCcceeEEEEEEeccccccCCCC
Q psy7357 229 ------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIE 291 (302)
Q Consensus 229 ------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~ 291 (302)
.|+.++++++.+|+.++ + .+.+. +|++ +|+++++++|++.. ..|+|||++|++++++++|++
T Consensus 737 a~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~~~~l~~~~~-~~~~hEfv~~~~~~~~~~g~~ 815 (939)
T TIGR00461 737 SVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHYPILFVGTL-KHVAHECILDLRPLKAKTGIE 815 (939)
T ss_pred cccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhccCcccccCCC-CceeEEEEEeccchhhhcCCC
Confidence 23344456666665542 2 22222 5666 78789999998755 567999999999999999999
Q ss_pred HHHHHHHhhcC
Q psy7357 292 AVDIAKRLMDY 302 (302)
Q Consensus 292 ~~~~~~~l~~~ 302 (302)
++||+|+|+||
T Consensus 816 ~~dIakrL~d~ 826 (939)
T TIGR00461 816 AIDVAKRLQDY 826 (939)
T ss_pred HHHHHHHHHhC
Confidence 99999999996
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=457.05 Aligned_cols=301 Identities=61% Similarity=1.098 Sum_probs=266.4
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||++++.++++|||++.|||||.+..||.++.++++++++++++|++.+.+++++|+++|++.++++++|++.+|+.
T Consensus 535 mk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~ 614 (993)
T PLN02414 535 MKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDH 614 (993)
T ss_pred cccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765655
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++||+|..+|++++..+.+.|++++.+|++++|.+|+++|++++++++++|++|++++||+.|.+++|+++|+++||+
T Consensus 615 ~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~ 694 (993)
T PLN02414 615 HRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHD 694 (993)
T ss_pred CCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999665689999999998767665479999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccCC--------CCc
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSI--------DSS 232 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~~--------~~~ 232 (302)
+|+++++|++|+++++++.+|+++|+|+++++.||||+.|+|+||||+|++++++++.++|||+.++.+ ..+
T Consensus 695 ~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~ 774 (993)
T PLN02414 695 NGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQP 774 (993)
T ss_pred cCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCC
Confidence 999999999999999888899999999999999999999999999999999999999999999976431 123
Q ss_pred chhhhHHHHhhHhhHHHHH----------------------HHHH-HHhcccccccccCCCcceeEEEEEEeccccccCC
Q psy7357 233 IGAVSAAHYGSASILPISW----------------------AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSAN 289 (302)
Q Consensus 233 l~~~~a~~~~~~~~~~~~~----------------------~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g 289 (302)
+|.+.+++|++.+++..+| +|++ +|++++++.|.++. ++|||||+++++.+++++|
T Consensus 775 iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~-~~~~hEfv~~~~~l~~~~g 853 (993)
T PLN02414 775 LGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKN-GTCAHEFIIDLRPFKNTAG 853 (993)
T ss_pred cCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCC-CCeeeeEEEeccccccccC
Confidence 4555544553333222222 4555 77778999998766 5789999999999998899
Q ss_pred CCHHHHHHHhhcC
Q psy7357 290 IEAVDIAKRLMDY 302 (302)
Q Consensus 290 ~~~~~~~~~l~~~ 302 (302)
++++|++|+|+||
T Consensus 854 ~~~~di~krL~d~ 866 (993)
T PLN02414 854 IEPEDVAKRLMDY 866 (993)
T ss_pred CCHHHHHHHHHHc
Confidence 9999999999986
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-56 Score=445.85 Aligned_cols=301 Identities=56% Similarity=0.984 Sum_probs=267.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||...+..++||||...|||||.|.+||++|.++|+|+++|+++|++.+++++++|++||+++++++|.|+..+|+.
T Consensus 510 mK~n~~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~ 589 (954)
T PRK12566 510 MKLNATSEMIPITWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQS 589 (954)
T ss_pred cCcCcHHhhhcccchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999444999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
.+++||++...|++|+.++...|++++.+|+|++|.+|+++|+++++++++++++|++++||+.|.+++|+++|+++||+
T Consensus 590 ~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~ 669 (954)
T PRK12566 590 QRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQ 669 (954)
T ss_pred CCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHH
Confidence 78999999999999999999999999999999899999999999998777899999999999888887579999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc----ccC--------
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP----LSS-------- 228 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~----~~~-------- 228 (302)
+|+++++|++|++++..+.+|+++|+||+++++||||+.|+|+|||++|++.+++++.+.+|+.. -|.
T Consensus 670 ~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S 749 (954)
T PRK12566 670 HGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVS 749 (954)
T ss_pred cCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCcee
Confidence 99999999999999999988999999999999999999999999999999999996555554321 111
Q ss_pred ---CCCcchhhhHHHHhhHh---h---HHHHH---HHHH-HHhcccccccccCCCcceeEEEEEEeccccccCCCCHHHH
Q psy7357 229 ---IDSSIGAVSAAHYGSAS---I---LPISW---AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDI 295 (302)
Q Consensus 229 ---~~~~l~~~~a~~~~~~~---~---~~~~~---~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~ 295 (302)
.|++++.++|..|+..+ + ...+. +|++ +|++++++.|.++. +.|||||++++.++++.+|++++|+
T Consensus 750 ~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~~~~~-~~~~hEfii~~~~l~~~~g~~~~dv 828 (954)
T PRK12566 750 AAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGGAFPVLYRGRN-ERVAHECILDLRPLKAQTGISEEDV 828 (954)
T ss_pred ecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCcCCCC-CCeeeEEEEEccccccccCCCHHHH
Confidence 45666778888887753 2 12122 6877 78889999997655 5679999999999988889999999
Q ss_pred HHHhhcC
Q psy7357 296 AKRLMDY 302 (302)
Q Consensus 296 ~~~l~~~ 302 (302)
+|+|+||
T Consensus 829 akRL~d~ 835 (954)
T PRK12566 829 AKRLMDY 835 (954)
T ss_pred HHHHHHC
Confidence 9999985
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=444.81 Aligned_cols=301 Identities=65% Similarity=1.122 Sum_probs=264.1
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||++++.++++|||++||||||.|++||.+++++++++++|+++|++.+.+++++|++||++++++++.|+..+|+.
T Consensus 509 ~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~ 588 (954)
T PRK05367 509 MKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG 588 (954)
T ss_pred CcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999887666655
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++|++|+..|++++..+.+.|++++.+|++.+|.+|+++|+++++++++++++|++++||+.|.+++|+++|+++||+
T Consensus 589 ~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~ 668 (954)
T PRK05367 589 HRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHE 668 (954)
T ss_pred CCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHH
Confidence 57789999999999999999999999999998889999999999998655679999999999889885489999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccCC--CCcchhhhH
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSI--DSSIGAVSA 238 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~~--~~~l~~~~a 238 (302)
+|++++||+||..++.++.+|+++|+|++++++||||+.|||+|||++|++++++++.++|||++++.+ ..+.+.+.+
T Consensus 669 ~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~t 748 (954)
T PRK05367 669 HGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSA 748 (954)
T ss_pred cCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchh
Confidence 999999999999888888889999999999999999999999999999999999999999999987541 122334444
Q ss_pred HHHhhHhhHHHHHH----------------------HHH-HHhcccccccccCCCcceeEEEEEEeccccccCCCCHHHH
Q psy7357 239 AHYGSASILPISWA----------------------YIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDI 295 (302)
Q Consensus 239 ~~~~~~~~~~~~~~----------------------y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~ 295 (302)
+.+++++++..+|. |++ +|++++++.|.++. ++++|||+++++.+++++|++++|+
T Consensus 749 a~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~g~~~~di 827 (954)
T PRK05367 749 APFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGAN-GRVAHECILDLRPLKESTGITVDDI 827 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCC-CCcccceEEEeecccccCCCCHHHH
Confidence 44544333333333 444 67778999998776 6889999999998888889999999
Q ss_pred HHHhhcC
Q psy7357 296 AKRLMDY 302 (302)
Q Consensus 296 ~~~l~~~ 302 (302)
+|+|+||
T Consensus 828 ~krL~d~ 834 (954)
T PRK05367 828 AKRLIDY 834 (954)
T ss_pred HHHHHHC
Confidence 9999986
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=406.24 Aligned_cols=268 Identities=32% Similarity=0.482 Sum_probs=203.1
Q ss_pred cccccccc-ccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchH--HHHHHHHHHHHHHHHhhc
Q psy7357 3 LNATTEMI-PCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA--QGEYAGLRAIQCYHQAQD 78 (302)
Q Consensus 3 ~~p~~~~~-~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga--~a~~a~l~a~~~~~~~~g 78 (302)
|+|+++++ +++|||| |+|||||| |+|||++|+++|+|+++|+|+|||.+|.++++|+ .|| +++|+.+..
T Consensus 78 ~~P~~i~~~i~~~~ef~TaYtPYQp-EisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aE-a~~ma~r~~----- 150 (429)
T PF02347_consen 78 YVPAVIDRNILSRPEFYTAYTPYQP-EISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAE-AMLMAVRAT----- 150 (429)
T ss_dssp ---HHHHH-HHCCHHCCCS-STTSG-GGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHH-HHHHHHHHH-----
T ss_pred eeChhhcCccccChhhhccCCCCCc-HHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHH-HHHHHHHhc-----
Confidence 68888888 9999999 99999999 9999999999999999999999999888777665 556 888887753
Q ss_pred CCCCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 79 AHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 79 ~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
.+++++|++++..|+.+.. ++...|++++.+|.++++..| + +++++|++++||++|+++ |+++|
T Consensus 151 ~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~---~~~a~v~vq~Pn~~G~~e-d~~~i 218 (429)
T PF02347_consen 151 KRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------D---DDTAAVMVQNPNTFGVFE-DIKEI 218 (429)
T ss_dssp TT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------S---TTEEEEEEESS-TTSB---THHHH
T ss_pred ccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------c---cCeEEEEeecCCCCceEe-eHHHH
Confidence 1345799999999999877 455789999999998888777 4 899999999999999999 79999
Q ss_pred HHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------ 228 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------ 228 (302)
++++|++|+++++ ++++++++.+.+|+++|+||++++ ||+|+.||++|||++|+++++++++++||||+||+
T Consensus 219 ~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G 296 (429)
T PF02347_consen 219 ADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADG 296 (429)
T ss_dssp HHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCC
T ss_pred HHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccc
Confidence 9999999999976 999999999999999999999988 99999999999999999999999999999999974
Q ss_pred -------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHhcccccccccCCCcc
Q psy7357 229 -------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLESHYKTLFRSSRSGL 272 (302)
Q Consensus 229 -------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~~g~~~~~~~~~~~~ 272 (302)
+||.|++++|++|+++. + ++.+. +|++ +|++-+...|.+++
T Consensus 297 ~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~--- 373 (429)
T PF02347_consen 297 KRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPF--- 373 (429)
T ss_dssp SCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSS---
T ss_pred cceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---
Confidence 78999999999999964 3 44443 6877 77643566666666
Q ss_pred eeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 273 VAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 273 ~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
||||+++..+- .+..++.++.+
T Consensus 374 -f~e~v~~~~~~-----~~~~~l~~~~~ 395 (429)
T PF02347_consen 374 -FFEFVVVFSKD-----KEVEELLKRGI 395 (429)
T ss_dssp -BSSEEEEESS------HHHHHHHHTT-
T ss_pred -ceeeeeecCCc-----HHHHHHHHHHH
Confidence 99999987631 23444555544
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=368.90 Aligned_cols=259 Identities=25% Similarity=0.367 Sum_probs=225.0
Q ss_pred ccccccc-cccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHH-HHHHHHHHHHHHHhhcC
Q psy7357 3 LNATTEM-IPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQG-EYAGLRAIQCYHQAQDA 79 (302)
Q Consensus 3 ~~p~~~~-~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~ 79 (302)
|+|++++ .++++||| |+|||||| |+|||.+|+++|+|+++|+|+||+.+|.+++++++| -+|++|+.|.. .
T Consensus 88 ~~P~vI~rnile~pewyTaYTPYQp-EISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~-----k 161 (450)
T COG0403 88 YTPPVILRNILENPEWYTAYTPYQP-EISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVT-----K 161 (450)
T ss_pred cCcHHHHHHhhcCccccccCCCCch-hhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhh-----c
Confidence 7899999 99999999 99999999 999999999999999999999999999999998743 33888887642 1
Q ss_pred CCCCEEEEcCCCCcccHHH----HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
.++++++|+...|+.+... ++..|++++.++.+ |+++++++ ++ .++.+|++++||++|.+++|+++|.
T Consensus 162 ~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~--~~~~gv~vQyP~~~G~~~~d~~~l~ 233 (450)
T COG0403 162 KKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-DD--GDVFGVLVQYPNTFGIVEEDLRALI 233 (450)
T ss_pred CcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-cc--cCeEEEEEecCCCCCccchhHHHHH
Confidence 3478999999999888664 44678899888875 88888888 51 5899999999999996655899999
Q ss_pred HHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-------
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------- 228 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------- 228 (302)
+++|++|++++ -++++.+++.+.+|+++|+||++++ .|.|+.|++||||..||+++++++.|+||||++|+
T Consensus 234 ~~~h~~~al~~-v~aDplaL~LL~pPGe~GADIvvG~-~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~ 311 (450)
T COG0403 234 EAAHSAGALVI-VAADPLALGLLKPPGEFGADIVVGS-AQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGK 311 (450)
T ss_pred HHHhhcCCEEE-EEechhHhhccCCccccCCceEEec-CcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCC
Confidence 99999999885 6678999999999999999999999 57899999999999999999999999999999996
Q ss_pred ------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh---cccccccccCCC
Q psy7357 229 ------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE---SHYKTLFRSSRS 270 (302)
Q Consensus 229 ------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~---~g~~~~~~~~~~ 270 (302)
+||.|.+++|++|+++. + +++.+ +|++ +|+ .|++++++ .|
T Consensus 312 ~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~-~f- 389 (450)
T COG0403 312 RAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD-HF- 389 (450)
T ss_pred chhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc-cc-
Confidence 78999999999999964 3 33333 5766 787 37999876 67
Q ss_pred cceeEEEEEEec
Q psy7357 271 GLVAHEFVIDVR 282 (302)
Q Consensus 271 ~~~~he~~~~~~ 282 (302)
|.+|+++++
T Consensus 390 ---Fdt~~v~~~ 398 (450)
T COG0403 390 ---FDTFTVRVP 398 (450)
T ss_pred ---eeeEEEecc
Confidence 999999988
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=360.71 Aligned_cols=294 Identities=44% Similarity=0.752 Sum_probs=242.3
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|+|+|.+++.++++++|++||||||+..+||.+++++++++++++++|++.+.+.+++|+.++.+++.+++.+....|+.
T Consensus 80 ~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~ 159 (481)
T PRK04366 80 MKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDT 159 (481)
T ss_pred CCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence 78999999999999999999999995599999999999999999999999888888888887745444455443222222
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++|+++++.|+++...++..|++++.+|+++++.+|+++|+++++ ++|++|++++||++|.+..|+++|+++||+
T Consensus 160 ~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~---~~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~ 236 (481)
T PRK04366 160 KRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVG---EDTAALMLTNPNTLGLFERNILEIAEIVHE 236 (481)
T ss_pred CCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcc---cCCeEEEEeCCCCccccchHHHHHHHHHHH
Confidence 45699999999999998889999999999998889999999999998 789999999999999883379999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------------
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------------ 228 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------------ 228 (302)
+|++++||++++.++.+..+|+++|+|++++++||+|+.|+|+|||++|++++++++.+++|+++++.
T Consensus 237 ~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~ 316 (481)
T PRK04366 237 AGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRP 316 (481)
T ss_pred cCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeeccccc
Confidence 99999999999877554458999999999999999999999999999999999999999999988752
Q ss_pred ---------CCCcchhhhHHHHhhHh----hH---HHHH---HHHH-HHhcccccccccCCCcceeEEEEEEeccccccC
Q psy7357 229 ---------IDSSIGAVSAAHYGSAS----IL---PISW---AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSA 288 (302)
Q Consensus 229 ---------~~~~l~~~~a~~~~~~~----~~---~~~~---~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~ 288 (302)
++|.+++++|..|+... +. ++.. +|++ +|++-+++.+++++ +|||+++.+.+. ..
T Consensus 317 ~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~-~~ 391 (481)
T PRK04366 317 KSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLPYDRPC----MHEFVLSGKKLK-ET 391 (481)
T ss_pred ccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCcccCCCCe----eEEEEEECcccc-cc
Confidence 23456667777777642 22 2222 4655 56532666665555 999999987553 34
Q ss_pred CCCHHHHHHHhhcC
Q psy7357 289 NIEAVDIAKRLMDY 302 (302)
Q Consensus 289 g~~~~~~~~~l~~~ 302 (302)
|+++.+++++|.++
T Consensus 392 g~~~~~v~~~L~~~ 405 (481)
T PRK04366 392 GVRTLDIAKRLLDY 405 (481)
T ss_pred CCCHHHHHHHHHHC
Confidence 78999999999874
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=381.70 Aligned_cols=251 Identities=19% Similarity=0.242 Sum_probs=216.5
Q ss_pred cccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchH--HHHHHHHHHHHHHHHhhc
Q psy7357 3 LNATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA--QGEYAGLRAIQCYHQAQD 78 (302)
Q Consensus 3 ~~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga--~a~~a~l~a~~~~~~~~g 78 (302)
|+|+++ +.+++|||| |+|||||| |+|||.+|+++|+|+++++|+|||.+|.+.++++ .|| |++|+.+.. +
T Consensus 92 ~~P~vi~~~i~~~~~~yTaYTPYQp-EisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aE-A~~ma~~~~---~- 165 (954)
T PRK12566 92 VTPTVILRNVLENPGWYTAYTPYQP-EIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAE-AMALAKRVA---K- 165 (954)
T ss_pred cCcHHHHHHHHhCchhhhcCCCCCc-hhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHH-HHHHHHHHh---h-
Confidence 789999 999999999 99999999 9999999999999999999999999988888885 446 888876531 1
Q ss_pred CCCCCEEEEcCCCCcccHHH----HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 79 AHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 79 ~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
.++++|+|++..|+.+... ++..|++++. +++++.++ +++++|++++||++|.++ |+++|
T Consensus 166 -~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~---~~~~~v~vq~P~~~G~i~-d~~~i 229 (954)
T PRK12566 166 -SKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAA---HAVFGALLQYPDTHGEIR-DLRPL 229 (954)
T ss_pred -cCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCC---CCEEEEEEECCCCceEEc-cHHHH
Confidence 2367899999998876653 4477888874 33455555 679999999999999998 89999
Q ss_pred HHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------ 228 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------ 228 (302)
.+++|++|+++ ++++++++++.+.+|+++|+||++++ +|.|+.|+++|||+.||+++++++.++||||++|+
T Consensus 230 ~~~~h~~gal~-~~~~d~laL~ll~~Pge~GADI~vG~-~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G 307 (954)
T PRK12566 230 IDQLHGQQALA-CVAADLLSLLVLTPPGELGADVVLGS-TQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARG 307 (954)
T ss_pred HHHHHHcCCEE-EEEeCHHHHhCCCChhhcCCcEEeeC-CCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCC
Confidence 99999999997 58889999999999999999999998 89999999999999999999999999999999986
Q ss_pred -------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh-cccccccccCCCc
Q psy7357 229 -------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE-SHYKTLFRSSRSG 271 (302)
Q Consensus 229 -------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~-~g~~~~~~~~~~~ 271 (302)
+||.|++++|++|++.. + +++.+ +|++ +|+ .|++++++ +|
T Consensus 308 ~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~-~f-- 384 (954)
T PRK12566 308 NTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR-HF-- 384 (954)
T ss_pred CeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC-Cc--
Confidence 78999999999999862 3 34333 5665 677 69999886 78
Q ss_pred ceeEEEEEEec
Q psy7357 272 LVAHEFVIDVR 282 (302)
Q Consensus 272 ~~~he~~~~~~ 282 (302)
|+||++++.
T Consensus 385 --F~~~~v~~~ 393 (954)
T PRK12566 385 --FDTLTLEVG 393 (954)
T ss_pred --cceEEEEcc
Confidence 999999984
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=375.94 Aligned_cols=267 Identities=19% Similarity=0.254 Sum_probs=224.5
Q ss_pred CCccccccccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchH--HHHHHHHHHHHHHHHhh
Q psy7357 1 MKLNATTEMIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA--QGEYAGLRAIQCYHQAQ 77 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga--~a~~a~l~a~~~~~~~~ 77 (302)
|||+|.+.+.++++||| |+|||||| |+|||.||+++++|+++++|+||+.+|.+.++++ .+| +++++.+.- +
T Consensus 76 ~~~p~~i~r~v~~~p~~~TaytPyQ~-EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aE-a~~~a~~~~---~ 150 (939)
T TIGR00461 76 TILPPVIQRNLLENPGWYTAYTPYQP-EISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAE-AMALSFNVS---K 150 (939)
T ss_pred CcCChHHHHHHHhCchhhhcCCCCCh-hhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHH-HHHHHHHhh---c
Confidence 67778888799999998 99999999 8999999999999999999999999877766665 446 777765421 1
Q ss_pred cCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHH
Q psy7357 78 DAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITD 153 (302)
Q Consensus 78 g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~ 153 (302)
+++++|+|++..|+.+.. +++..|++++.++ +++|++.+ ++++|++++||++|.++ |+++
T Consensus 151 --~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~-----~~~~v~~q~Pn~~G~ie-d~~~ 214 (939)
T TIGR00461 151 --KKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV-----DVFGCLLQYPATDGSIL-DYKQ 214 (939)
T ss_pred --CCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC-----CEEEEEEECCCCCeEEe-cHHH
Confidence 245899999999988764 3468899999874 34555443 57899999999999999 8999
Q ss_pred HHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-----
Q psy7357 154 VCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS----- 228 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~----- 228 (302)
|++++|++|+++++ ++++.++..+.+|+++|+||++++ ||+|+.|+++|||+.|++++++++.++||||++|.
T Consensus 215 i~~~~h~~gal~~~-~ad~~al~ll~~Pge~GaDi~vg~-~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~ 292 (939)
T TIGR00461 215 LIDALHSHKSLVSV-AADLMALTLLTPPGHYGADIVLGS-SQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDAL 292 (939)
T ss_pred HHHHHHHcCCEEEE-EechHHhCCcCCHHHcCCcEEeeC-CCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCC
Confidence 99999999999988 568899999999999999999887 89999999999999999999999999999999984
Q ss_pred --------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh-cccccccccCCC
Q psy7357 229 --------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE-SHYKTLFRSSRS 270 (302)
Q Consensus 229 --------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~-~g~~~~~~~~~~ 270 (302)
+||.|++++|++|+... + +++.+ +|++ +|+ .|++++++ +|
T Consensus 293 G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~-~f- 370 (939)
T TIGR00461 293 GNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK-TW- 370 (939)
T ss_pred CCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc-
Confidence 56888999999998853 3 33333 4655 676 69999886 78
Q ss_pred cceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 271 GLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 271 ~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
|+||+|+++. .+++++.++|++
T Consensus 371 ---F~~~~v~~~~------~~~~~i~~~~~~ 392 (939)
T TIGR00461 371 ---FDTLTVKVGN------GISSELLKAAEE 392 (939)
T ss_pred ---cceEEEEeCC------CCHHHHHHHHHH
Confidence 9999999862 468888888875
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=345.10 Aligned_cols=266 Identities=18% Similarity=0.219 Sum_probs=215.3
Q ss_pred cccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHH-HHHHHHHHHHHHHhhcC
Q psy7357 3 LNATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQG-EYAGLRAIQCYHQAQDA 79 (302)
Q Consensus 3 ~~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~ 79 (302)
|+|+++ +.++++|+| |+|||||| |+|||.+|+++++|+++++|+||+.+|++..+++++ .++++++++ +. .
T Consensus 89 ~~P~vi~~~i~~~~~~~t~ytPyQ~-EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~----~ 162 (954)
T PRK05367 89 HTPPVILRNILENPAWYTAYTPYQP-EISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VS----K 162 (954)
T ss_pred cCcHHHHHHHHhCcchhhccCCCCh-HHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hc----c
Confidence 899977 889999998 99999999 899999999999999999999999987776666532 337777654 21 0
Q ss_pred CCCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
+++++|++++..|+.+.. .++..|++|+.+|.+.+ ++ + +++.++++++||++|.++ |+++|+
T Consensus 163 ~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~------~---~~~~~vlvq~p~~~G~i~-d~~~i~ 228 (954)
T PRK05367 163 SKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD------H---DDVFGVLLQYPGTSGEVR-DYTALI 228 (954)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC------c---ccEEEEEEecCCCCeeec-cHHHHH
Confidence 125899999999988765 34678999999997542 11 2 578889999999999999 899999
Q ss_pred HHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-------
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------- 228 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------- 228 (302)
++||++|+++++|+ +..+++.+.+|+++|+||+++++||+. .|+|+|||+.|++++++++.++||++++|.
T Consensus 229 ~~ah~~Gal~~vda-~~~Al~~l~~pge~GaDi~vgs~qkfg-~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~ 306 (954)
T PRK05367 229 AAAHARGALVAVAA-DLLALTLLTPPGEMGADIAVGSAQRFG-VPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGN 306 (954)
T ss_pred HHHHHcCCEEEEEe-hhhhccCCCChhhcCCCEEEeeCcccC-CCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCC
Confidence 99999999999986 456777778899999999999999866 999999999999999999999999999973
Q ss_pred ------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh-cccccccccCCCcc
Q psy7357 229 ------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE-SHYKTLFRSSRSGL 272 (302)
Q Consensus 229 ------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~-~g~~~~~~~~~~~~ 272 (302)
++|.|.++.|++|+... + +++.. +|++ +|+ .|++++++ .+
T Consensus 307 ~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~-~~--- 382 (954)
T PRK05367 307 PALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHD-SF--- 382 (954)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCC-CC---
Confidence 23456667777776632 2 23332 4655 676 58998764 56
Q ss_pred eeEEEEEEeccccccCCCCHHHHHHHhhcC
Q psy7357 273 VAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302 (302)
Q Consensus 273 ~~he~~~~~~~~~~~~g~~~~~~~~~l~~~ 302 (302)
|++|.++++ .+++++.++|+++
T Consensus 383 -f~~~~~~~~-------~~~~~i~~~l~~~ 404 (954)
T PRK05367 383 -FDTLTVEVG-------GDAAAVLARALAA 404 (954)
T ss_pred -CCeEEEeCC-------CCHHHHHHHHHHC
Confidence 899999865 4789999999874
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=327.15 Aligned_cols=264 Identities=16% Similarity=0.188 Sum_probs=214.1
Q ss_pred ccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHH-HHHHHHHHHHHHHhhcCC
Q psy7357 4 NATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQG-EYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 4 ~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~~ 80 (302)
.|+++ +.+++++|| |+|||||| |+|||.+|.++++|+++++|+|++.+|++.++++++ .++++++.+.- .+
T Consensus 117 ~P~~v~~~i~~~~~~~TaytPYqa-EisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~-----~g 190 (993)
T PLN02414 117 VPPVILRNILENPGWYTQYTPYQA-EIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIL-----KG 190 (993)
T ss_pred CCHHHHHHHHhChHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcc-----cC
Confidence 55555 999999999 99999999 999999999999999999999999988887777643 33666665420 12
Q ss_pred CCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCE 156 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ 156 (302)
++++|++++..|+.+.. .++..|++|+.+|.+. .| ..+ +.+.++++++||++|.+. |+++|++
T Consensus 191 ~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~---~~------~~~---~~v~~vlvq~P~~~G~v~-dv~~I~~ 257 (993)
T PLN02414 191 KKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKD---FD------YSS---GDVCGVLVQYPATDGEVL-DYAEFVK 257 (993)
T ss_pred CCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchh---hc------ccc---CceEEEEEecCCCCeEEc-CHHHHHH
Confidence 45889999999998865 3456799999998743 11 112 467888899999999999 8999999
Q ss_pred HHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC--------
Q psy7357 157 LIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS-------- 228 (302)
Q Consensus 157 ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~-------- 228 (302)
+||++|+++++ ++++++++.+.+|+++|+||+++++|||+ .|+|+|||+.|++++++++.+++|||++|.
T Consensus 258 ~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg-~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~ 335 (993)
T PLN02414 258 NAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFG-VPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKP 335 (993)
T ss_pred HHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccc-cCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCc
Confidence 99999999998 88999999988899999999999999985 999999999999999999999999999874
Q ss_pred -----------------------CCCcchhhhHHHHhhH----hh---HHHHH---HHHH-HHh-cccccccccCCCcce
Q psy7357 229 -----------------------IDSSIGAVSAAHYGSA----SI---LPISW---AYIR-RLE-SHYKTLFRSSRSGLV 273 (302)
Q Consensus 229 -----------------------~~~~l~~~~a~~~~~~----~~---~~~~~---~y~~-~l~-~g~~~~~~~~~~~~~ 273 (302)
++|+|++..+++|++. ++ +++.. +|++ +|. .|+++.++ ++
T Consensus 336 ~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~-~~---- 410 (993)
T PLN02414 336 ALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSL-PF---- 410 (993)
T ss_pred ccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCC-CC----
Confidence 3457777777777754 22 33332 4655 676 58998765 67
Q ss_pred eEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 274 AHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 274 ~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
|++|.++++ +.+++.++|++
T Consensus 411 f~~vt~~~~--------~~~~v~~~L~~ 430 (993)
T PLN02414 411 FDTVKVKCS--------DADAIADAAAK 430 (993)
T ss_pred cCeEEEecC--------CHHHHHHHHHH
Confidence 899999976 24788888875
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=248.35 Aligned_cols=246 Identities=20% Similarity=0.210 Sum_probs=194.2
Q ss_pred cccccHHHHHHHHH----HHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----
Q psy7357 27 DQARGYEQLIGELE----TDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---- 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~----~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---- 98 (302)
.+++|+ +++++++ ++.++|||++.+|++|.||++|++++++|+. ++||+|+..+..||.|...
T Consensus 62 RyYgGc-e~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All--------~pGDtimgm~l~~GGHltHg~~v 132 (413)
T COG0112 62 RYYGGC-EYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALL--------QPGDTIMGLDLSHGGHLTHGSPV 132 (413)
T ss_pred cccCCC-eeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHc--------CCCCeEecccCCCCCcccCCCCC
Confidence 556665 7777766 5899999999999999999999999999987 7999999999989877542
Q ss_pred -HHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc-
Q psy7357 99 -AQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ- 175 (302)
Q Consensus 99 -~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~- 175 (302)
....-++++.+|+|+ ++.||+|++++.+.+++|+ +|+... +.+-... |++++++||++.|+++++|.||..++
T Consensus 133 ~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK--~ii~G~-SaY~r~i-d~~~~reIad~VGA~L~~DmAHiaGLV 208 (413)
T COG0112 133 NFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPK--LIIAGG-SAYSRPI-DFKRFREIADEVGAYLMVDMAHVAGLI 208 (413)
T ss_pred CccceeEEeEecccccccCccCHHHHHHHHHHhCCC--EEEECc-ccccccc-CHHHHHHHHHHhCceEEehHHHHHHHH
Confidence 122227899999985 6999999999999987665 455544 5444555 89999999999999999999996443
Q ss_pred --cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCcccC-CCCcchhhhHHHHhhHh-hHHHH
Q psy7357 176 --VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPLSS-IDSSIGAVSAAHYGSAS-ILPIS 250 (302)
Q Consensus 176 --~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~~~-~~~~l~~~~a~~~~~~~-~~~~~ 250 (302)
+.+++|-.+ +|||++++||||. |||.|+|++++ ++.+++...+|+. ...+++++.|+...++. +++..
T Consensus 209 A~G~~p~P~~~-AdvVTtTTHKTlr------GPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~ 281 (413)
T COG0112 209 AGGVHPNPLPH-ADVVTTTTHKTLR------GPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPE 281 (413)
T ss_pred hcccCCCCCCc-cceEeCCcccCCC------CCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChh
Confidence 445778777 9999999999998 89999999995 8999988877753 22345555556888876 44555
Q ss_pred -HHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 251 -WAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 251 -~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
..|++ +|. .|++++.++++ +|+|+||+++ .|++++++.+.|-
T Consensus 282 fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTd----nHl~lVDl~~----~~~~Gk~ae~~L~ 336 (413)
T COG0112 282 FKEYAKQVVKNAKALAEALKERGFKVVSGGTD----NHLVLVDLRS----KGLTGKKAEAALE 336 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEecCCcc----ceEEEEEccc----CCCCHHHHHHHHH
Confidence 37766 455 79999976555 9999999993 2688888888774
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=257.49 Aligned_cols=211 Identities=25% Similarity=0.371 Sum_probs=177.1
Q ss_pred CccccccccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcC
Q psy7357 2 KLNATTEMIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDA 79 (302)
Q Consensus 2 ~~~p~~~~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~ 79 (302)
+++|..+...+.++++ ++|+||++ +.++|.++.+.|+++++++++|++..++..++|++ +.++++++++.
T Consensus 80 ~~~p~~~~~~~~~~~~~~~y~~~~~-~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~------- 151 (447)
T PRK00451 80 HYIPAVVDHIISRSEFYTAYTPYQP-EISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI------- 151 (447)
T ss_pred CcCcHHHHHHHhchhHHHhcCCCCC-ccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh-------
Confidence 5778888888888888 89999999 88999999999999999999999887776666664 34355555431
Q ss_pred CCCCEEEEcCCCCcccHHHHH----hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNPASAQ----MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~~~----~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
.++++|+++++.|+++...++ ..|++++.+|++++ .+|+++++++++ ++|++|++++||++|.+. |+++|+
T Consensus 152 ~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~---~~t~~v~l~~pn~tG~v~-~l~~I~ 226 (447)
T PRK00451 152 TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD---DDTAAVVVQYPNFFGVIE-DLEEIA 226 (447)
T ss_pred cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC---CCeEEEEEECCCCCCeeC-CHHHHH
Confidence 478899999999988876443 47999999999877 899999999998 789999999999999999 799999
Q ss_pred HHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~ 227 (302)
++||++|++++++ .+..+.+.+..|+++++|++++++|| |++|+.+||||+|++++++++++.+|.+++|
T Consensus 227 ~~a~~~~~~~iv~-~d~~~~g~~~~~~~~~~D~~~~s~~k-~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g 296 (447)
T PRK00451 227 EIAHAGGALFIVG-VDPVSLGLLKPPGEYGADIVVGEGQP-LGIPLSFGGPYLGFFATRKKLVRQMPGRLVG 296 (447)
T ss_pred HHHHHCCCEEEEE-cChHHhccCCCcccCCCCEEEECCCc-CCCCCCCCCCCchHHHhhHHHHhhCCCCEee
Confidence 9999999999883 22345555556789999999999765 8999999999999999999988888766443
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=229.62 Aligned_cols=197 Identities=44% Similarity=0.705 Sum_probs=159.1
Q ss_pred CCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCc
Q psy7357 16 QLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHG 93 (302)
Q Consensus 16 ~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg 93 (302)
..+.|+||.| ..++|..+.++++++++++++|++. +.+..++|+.++ +++++++.. .+++|+|+++++.|+
T Consensus 47 ~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~-~~~~~~~~~-----~~~gd~Vl~~~~~h~ 119 (398)
T cd00613 47 FYTAYTPYQP-EISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAE-AAGLAAIRA-----YHKRNKVLVPDSAHP 119 (398)
T ss_pred CcccCCCCCh-hhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHH-HHHHHHHhc-----ccCCCEEEEcCccCc
Confidence 3478888887 7789999999999999999999974 333333333445 333333210 024899999999999
Q ss_pred ccHHHHHhCC----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 94 TNPASAQMAG----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 94 ~~~~~~~~~g----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
++.......| ++++.+|.++++.+|+++++++++ ++|++|++++||++|.+.+.+++|+++|+++|+++|+|+
T Consensus 120 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~---~~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~ 196 (398)
T cd00613 120 TNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS---EEVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDG 196 (398)
T ss_pred chHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC---CCeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEe
Confidence 9987666555 999999987778899999999997 789999999999889997335999999999999999999
Q ss_pred CCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 170 ANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 170 a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++.... ...+++.+++|++++++||++ +|+++|||++|++++++++.+.+++.
T Consensus 197 ~~~~~~-~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~~~~~~~ 249 (398)
T cd00613 197 DNLNLT-GLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELVRFLPGR 249 (398)
T ss_pred cccccc-CCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEEEhhhhHhhCCCC
Confidence 875444 334677889999999999999 99999999999999998888877654
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=235.03 Aligned_cols=244 Identities=22% Similarity=0.239 Sum_probs=166.0
Q ss_pred cccHHHHHHHHH----HHHHHHhCCC----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---
Q psy7357 29 ARGYEQLIGELE----TDLCEITGYD----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--- 97 (302)
Q Consensus 29 sqG~l~~~~e~~----~~l~~l~g~~----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--- 97 (302)
+.|-.+.+++++ ++++++||++ .++++|.||+.|++++++|+. ++||+|+..+..||.|..
T Consensus 57 yy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl--------~pGD~Im~l~l~~GGHlshg~ 128 (399)
T PF00464_consen 57 YYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL--------KPGDTIMGLSLPHGGHLSHGS 128 (399)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT---------TT-EEEEEEGGGT--GGGT-
T ss_pred cccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH--------hhcCcEEecChhhcccccccc
Confidence 333347776644 6899999999 999999999999989999887 789999999988887643
Q ss_pred H--H-----HhCCCEEEEeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 98 S--A-----QMAGMSVEPVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 98 ~--~-----~~~g~~v~~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
. . ....++++.+++| +++.||+|++++.+.+++|+ +|++.. +.+-... |++++++||++.|+++++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPk--lIi~G~-S~y~~~~-d~~~~reIad~vga~l~~D~ 204 (399)
T PF00464_consen 129 SVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPK--LIICGA-SSYPRPI-DFKRFREIADEVGAYLMADI 204 (399)
T ss_dssp TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--S--EEEEE--SSTSS----HHHHHHHHHHTT-EEEEE-
T ss_pred cccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCC--EEEECc-hhccCcc-CHHHHHHHHHhcCcEEEecc
Confidence 1 1 3345799999998 46899999999999987665 465555 4433444 89999999999999999999
Q ss_pred CCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEe--------------CCCCCCCCCCcccC--CC
Q psy7357 170 ANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK--------------SHLAPFLPVHPLSS--ID 230 (302)
Q Consensus 170 a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~--------------~~l~~~lpg~~~~~--~~ 230 (302)
+|..++ +.+++|-++ +||+++++||||. ||+.|+|+++ +++.++|...+++. ++
T Consensus 205 sH~~GLIa~g~~~~P~~~-ADvvt~sThKtl~------GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~ 277 (399)
T PF00464_consen 205 SHIAGLIAGGLFPNPFPY-ADVVTGSTHKTLR------GPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGG 277 (399)
T ss_dssp TTTHHHHHTTSS--GCCT-SSEEEEESSGGG-------SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS
T ss_pred cccccceehheecCcccc-ceEEEeecccccc------ccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccC
Confidence 996444 445778876 9999999999998 8999999999 56777765555432 55
Q ss_pred CcchhhhHHHHhhHhhH-HH-HHHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHH
Q psy7357 231 SSIGAVSAAHYGSASIL-PI-SWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIA 296 (302)
Q Consensus 231 ~~l~~~~a~~~~~~~~~-~~-~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~ 296 (302)
..++.++ +...++..+ .. ...|++ .|. .|+++++++++ +|+++||+++ .|+++.+++
T Consensus 278 ~h~~~ia-alAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd----~H~vlvd~~~----~~~~g~~a~ 348 (399)
T PF00464_consen 278 PHMHRIA-ALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGGTD----NHQVLVDLRS----FGIDGKEAE 348 (399)
T ss_dssp --HHHHH-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-S----SSEEEEEGGG----GTS-HHHHH
T ss_pred cchhHHH-HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCC----CCeEEEEecc----cccchHHHH
Confidence 6666776 455555422 22 236766 455 69999986555 9999999985 368899998
Q ss_pred HHhh
Q psy7357 297 KRLM 300 (302)
Q Consensus 297 ~~l~ 300 (302)
++|-
T Consensus 349 ~~Le 352 (399)
T PF00464_consen 349 KALE 352 (399)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=227.03 Aligned_cols=257 Identities=18% Similarity=0.134 Sum_probs=179.2
Q ss_pred CC-ccCCCCCCCcccccHHHHHHHHH----HHHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE
Q psy7357 16 QL-TNMHPFIPQDQARGYEQLIGELE----TDLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86 (302)
Q Consensus 16 ~f-t~~~py~p~e~sqG~l~~~~e~~----~~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl 86 (302)
.| ..|.-..|...+.|-.+.+++++ ++.+++||++. +|++|+||+.|++++++++. +++|+|+
T Consensus 171 ~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl--------~PGD~IL 242 (586)
T PLN02271 171 HLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLL--------LPGDRIM 242 (586)
T ss_pred cccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhc--------CCCCEEE
Confidence 45 33433334444444457777765 68889999887 89999999999989988875 7999999
Q ss_pred EcCCCCcccHHH---------HHhCCCE--EEEeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 87 IPVSAHGTNPAS---------AQMAGMS--VEPVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 87 v~~~~hg~~~~~---------~~~~g~~--v~~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
..+..||.|... +...|.. ++.++++ ++|.+|+++|++.+.+ .++++|++...++. ... |+++|
T Consensus 243 ~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~--~rPKLII~g~Sayp-r~~-D~~~i 318 (586)
T PLN02271 243 GLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD--FRPKILICGGSSYP-REW-DYARF 318 (586)
T ss_pred EecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh--cCCeEEEECchhcc-CcC-CHHHH
Confidence 999999988542 1344644 4444565 4689999999995543 67888888663332 445 89999
Q ss_pred HHHHHHhCCEEEEecCCccccccc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC--------
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV-------- 223 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg-------- 223 (302)
++||+++|+++++|++|..++... .+|.. ++|++++++||||. ||+.|+|+++++..+.+.|
T Consensus 319 ~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLr------GPrGG~I~~r~~~~~~~~g~~gs~s~~ 391 (586)
T PLN02271 319 RQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLR------GPRGGIIFYRKGPKLRKQGMLLSHGDD 391 (586)
T ss_pred HHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCC------CCCceEEEecccccccccCCccccccc
Confidence 999999999999999997666532 34544 59999999999998 7877999998653322222
Q ss_pred ------------CcccC--CCCcchhhhHHHHhhHhh-HHHH-HHHHH-----------HHh-cccccccccCCCcceeE
Q psy7357 224 ------------HPLSS--IDSSIGAVSAAHYGSASI-LPIS-WAYIR-----------RLE-SHYKTLFRSSRSGLVAH 275 (302)
Q Consensus 224 ------------~~~~~--~~~~l~~~~a~~~~~~~~-~~~~-~~y~~-----------~l~-~g~~~~~~~~~~~~~~h 275 (302)
.+++. ++...+.++ +...++.. .... ..|++ .|. .||+++.+|++ +|
T Consensus 392 ~~~~d~~~kI~~aVfPglqgGphn~~IA-alAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTd----nH 466 (586)
T PLN02271 392 NSHYDFEEKINFAVFPSLQGGPHNNHIA-ALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTD----NH 466 (586)
T ss_pred cccHHHHHHhhcccCCccccChhHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCCCC----cc
Confidence 22211 222233333 45555442 1222 36665 454 79999986555 99
Q ss_pred EEEEEeccccccCCCCHHHHHHHhh
Q psy7357 276 EFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 276 e~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
+++||+++ .|++++++.++|-
T Consensus 467 lvLvDl~~----~g~~G~~ae~~Le 487 (586)
T PLN02271 467 LLLWDLTT----LGLTGKNYEKVCE 487 (586)
T ss_pred eeeecCcc----cCCCHHHHHHHHH
Confidence 99999985 3688888888774
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=225.91 Aligned_cols=202 Identities=19% Similarity=0.292 Sum_probs=162.6
Q ss_pred ccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCC
Q psy7357 4 NATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 4 ~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
+|.++ ..++..|+| |+|||||| |+|||.+|.+-.+|+++++++|++.+|.+.- .|+.|.+|+.++.+. +
T Consensus 132 vP~~I~RNilenp~W~TqYTPYQ~-EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~-------~ 203 (1001)
T KOG2040|consen 132 VPAVILRNILENPGWYTQYTPYQA-EISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRI-------N 203 (1001)
T ss_pred CcHHHHHHhhhCCcceeccCCCch-hhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhh-------c
Confidence 34443 347888999 99999999 9999999999999999999999998766533 344333377776653 5
Q ss_pred CCCEEEEcCCCCcccHHHHH----hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQ----MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCE 156 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~----~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ 156 (302)
++++.++....|+.+...++ ..|++++. .|+++..... +++.+|++++|++.|.+. |..++.+
T Consensus 204 krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~--------~~~~~~~~s~----~~v~gvlvQYP~t~G~i~-d~~el~~ 270 (1001)
T KOG2040|consen 204 KRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVV--------SDIKEADYSS----KDVSGVLVQYPDTEGSVL-DFDELVE 270 (1001)
T ss_pred ccceEEecCCCCcchhhhhhccccccceeEEe--------cCHHHhhccc----cceeEEEEEcCCCCCccc-CHHHHHH
Confidence 77788999889988877654 23334322 2333332222 568999999999999999 8999999
Q ss_pred HHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC
Q psy7357 157 LIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS 228 (302)
Q Consensus 157 ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~ 228 (302)
.+|+.|.+++ -+.+..++-.+.+|+++|+||++++ .|-|+.|+|.|||..||+++++++.+.||||++|.
T Consensus 271 ~a~~~~s~vv-~atDLLaLtiLrpPgefGaDIavGS-sQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGv 340 (1001)
T KOG2040|consen 271 LAHANGSLVV-MATDLLALTILRPPGEFGADIAVGS-SQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGV 340 (1001)
T ss_pred HhhccCceEE-EeehhhHHHccCChhhcCceeeecc-ccccCccccCCCchHHHHHHHHHHHhhCCCceEee
Confidence 9999999975 4457788888899999999999999 57799999999999999999999999999999985
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=205.47 Aligned_cols=185 Identities=20% Similarity=0.267 Sum_probs=150.5
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhC
Q psy7357 28 QARGYEQLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMA 102 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~ 102 (302)
.++-..+.+++.|+.+++++|++. .++..+.|++ + +..+.+..+... ..+||+||+++.+|+++.. .++..
T Consensus 60 ~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT-~-aln~va~~l~~~--~~~gdeIv~s~~EH~sn~~pw~~~~~~~ 135 (405)
T COG0520 60 LAEEATDLYEAAREAVARFLNADSSDEIVFTRGTT-E-ALNLVARGLGRS--LKPGDEIVVSDLEHHSNIVPWQELAKRT 135 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChh-H-HHHHHHHHhhhh--hcCCCEEEEccCcchhhHHHHHHHHHhc
Confidence 455667799999999999999984 6666666653 1 223323322100 1578999999999998854 45577
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|++++++|++++|.+|++++++.++ ++|++|.+++- |.+|++. |+++|+++||++|++++||++|..+...+ +.
T Consensus 136 Ga~v~~i~~~~~g~~~~~~~~~~i~---~~Tklvais~vSn~tG~~~-pv~~I~~la~~~ga~v~VDaaq~~~h~~i-dv 210 (405)
T COG0520 136 GAKVRVIPLDDDGLLDLDALEKLIT---PKTKLVALSHVSNVTGTVN-PVKEIAELAHEHGALVLVDAAQAAGHLPI-DV 210 (405)
T ss_pred CcEEEEEecCCCCCcCHHHHHHhcC---CCceEEEEECccccccccc-hHHHHHHHHHHcCCEEEEECccccCccCC-Cc
Confidence 9999999999899999999999998 89999999984 7899999 79999999999999999999997777654 66
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCCCCccc
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lpg~~~~ 227 (302)
.++++|++++|+||||. || |+|++++++++.+.|+....|
T Consensus 211 ~~l~~Df~afsgHKwl~------gP~GiGvLy~r~~~l~~l~P~~~g 251 (405)
T COG0520 211 QELGCDFLAFSGHKWLL------GPTGIGVLYVRKELLEELEPFLGG 251 (405)
T ss_pred hhcCCCEEEEccccccc------CCCceEEEEEchHHHhhcCCcccC
Confidence 78999999999999997 56 899999999999988554443
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=202.11 Aligned_cols=251 Identities=18% Similarity=0.166 Sum_probs=172.3
Q ss_pred cccHHHHHHHHH----HHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH------HH-----------------hhcCCC
Q psy7357 29 ARGYEQLIGELE----TDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY------HQ-----------------AQDAHH 81 (302)
Q Consensus 29 sqG~l~~~~e~~----~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~------~~-----------------~~g~~~ 81 (302)
+.|-.+.+++++ ++.+++||++++|++|.||+.|++++++++..- ++ .|..-.
T Consensus 86 yy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 165 (493)
T PRK13580 86 FYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELG 165 (493)
T ss_pred ccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCC
Confidence 334336666665 588999999999999999999999999988721 00 000001
Q ss_pred CCEEEEcCCCCcccHH-----HHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPA-----SAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~-----~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
+|+|+..+..+|.|.. ......++++.+++++ +|.+|++++++.++ +++..|+++..+.++... |+++|+
T Consensus 166 gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~---~~~plvii~g~S~~~~~~-dl~~i~ 241 (493)
T PRK13580 166 NQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAR---EFKPLILVAGYSAYPRRV-NFAKLR 241 (493)
T ss_pred CCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHh---hcCCEEEEeCccccCCCc-CHHHHH
Confidence 7999999888876632 1223346788888875 68999999999998 566667777755446666 799999
Q ss_pred HHHHHhCCEEEEecCCccccccc-C-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC---CCCcc
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGL-C-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL---PVHPL 226 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~-~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l---pg~~~ 226 (302)
++|+++|+++++|+||..++.+. . .|. .++||+++++||||+ ||++|++++++++.+++ ...++
T Consensus 242 eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~------GP~GG~I~~~~~l~~~L~~a~P~i~ 314 (493)
T PRK13580 242 EIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLR------GPRGGLVLAKKEYADAVDKGCPLVL 314 (493)
T ss_pred HHHHHcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChhhcc------CCCeEEEEecHHHHHHHhhCCCccc
Confidence 99999999999999997666432 1 232 368999999999997 67889999998877766 22233
Q ss_pred cCCCCcchhhhHHHHhhHhhHH-HH-HHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCH
Q psy7357 227 SSIDSSIGAVSAAHYGSASILP-IS-WAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEA 292 (302)
Q Consensus 227 ~~~~~~l~~~~a~~~~~~~~~~-~~-~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~ 292 (302)
++.....++ +...++..+. .. ..|.+ +|. .||+++.+++. +|.+.|++.+. +++.
T Consensus 315 --gg~l~p~iA-A~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTd----shIV~V~lg~~----~~~g 383 (493)
T PRK13580 315 --GGPLPHVMA-AKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTD----NHLVLIDVTSF----GLTG 383 (493)
T ss_pred --CCCccHHHH-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCC----CCEEEEEeCCH----HHHH
Confidence 222223333 3333443211 11 12322 565 69998754444 99999999753 3456
Q ss_pred HHHHHHhhc
Q psy7357 293 VDIAKRLMD 301 (302)
Q Consensus 293 ~~~~~~l~~ 301 (302)
++++++|.+
T Consensus 384 ~~a~~~L~e 392 (493)
T PRK13580 384 RQAESALLD 392 (493)
T ss_pred HHHHHHHHH
Confidence 677777754
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-24 Score=197.59 Aligned_cols=178 Identities=21% Similarity=0.331 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH-HHhhcCCCCCEEEEcCCCCcccHHHHH---hCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY-HQAQDAHHRNVCLIPVSAHGTNPASAQ---MAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~-~~~~g~~~~d~Vlv~~~~hg~~~~~~~---~~g~~v 106 (302)
-..+++++.|+.+++++|++...++.+||++ | +.++++... ...+...++++|+++..+|.+....++ ..|++|
T Consensus 41 ~A~~~ve~AR~~iA~llga~~~eIiFTSG~T-E-snNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~V 118 (386)
T COG1104 41 EARKAVEEAREQIAKLLGADPEEIIFTSGAT-E-SNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEV 118 (386)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEecCCc-H-HHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeE
Confidence 4678999999999999999987777777763 2 445555541 111212367899999999987766544 459999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
.++|++.+|.+|+++|+++|+ |+|.+|.+... |.+|+++ ||++|+++|+++|++|++|++|.++...+ ++.+++
T Consensus 119 tyl~V~~~G~v~~e~L~~al~---~~T~LVSim~aNnE~G~IQ-pI~ei~~i~k~~~i~fHvDAvQa~Gkipi-~~~~~~ 193 (386)
T COG1104 119 TYLPVDSNGLVDLEQLEEALR---PDTILVSIMHANNETGTIQ-PIAEIGEICKERGILFHVDAVQAVGKIPI-DLEELG 193 (386)
T ss_pred EEeCCCCCCeEcHHHHHHhcC---CCceEEEEEecccCeeecc-cHHHHHHHHHHcCCeEEEehhhhcCceec-cccccC
Confidence 999999999999999999999 88888777665 5899999 79999999999999999999997777665 567778
Q ss_pred CcEEEeCCCcccCCCCCCCCC-cceeEEEeCC--CCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSH--LAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~--l~~~lp 222 (302)
+|++++|+|| ++|| |+|++++++. +.+.+.
T Consensus 194 vD~ls~SaHK-------~~GpkGiGaLyv~~~~~~~p~i~ 226 (386)
T COG1104 194 VDLLSFSAHK-------FGGPKGIGALYVRPGVRLEPLIH 226 (386)
T ss_pred cceEEeehhh-------ccCCCceEEEEECCCCccCceec
Confidence 9999999999 5578 8999999753 334443
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=180.82 Aligned_cols=182 Identities=16% Similarity=0.265 Sum_probs=141.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~ 105 (302)
..+.+.++++++.+++++|.+..++. ..+|+.++..++.++.... .+++++|++++..|+++... .+..|++
T Consensus 39 ~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~----~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~ 114 (364)
T PLN02651 39 WESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFY----KDKKKHVITTQTEHKCVLDSCRHLQQEGFE 114 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc----cCCCCEEEEcccccHHHHHHHHHHHhcCCE
Confidence 34567899999999999999765444 4445555434444432211 14688999999999876442 3367999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|+++++++++ +++++|+++++ |++|.+. |+++|+++||++|+++++|+++..+...+ ++.++
T Consensus 115 v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~v~~~~n~tG~~~-~l~~I~~~~~~~g~~~~vD~a~~~g~~~~-~~~~~ 189 (364)
T PLN02651 115 VTYLPVKSDGLVDLDELAAAIR---PDTALVSVMAVNNEIGVIQ-PVEEIGELCREKKVLFHTDAAQAVGKIPV-DVDDL 189 (364)
T ss_pred EEEEccCCCCcCCHHHHHHhcC---CCcEEEEEECCCCCceecc-cHHHHHHHHHHcCCEEEEEcchhhCCccc-CcccC
Confidence 9999998889999999999998 78999999987 5899999 79999999999999999999986655443 56788
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
++|++++++||+ +.| +|+|++++++++.++++....
T Consensus 190 ~~D~~~~s~hK~-~gp-----~G~g~l~v~~~~~~~l~p~~~ 225 (364)
T PLN02651 190 GVDLMSISGHKI-YGP-----KGVGALYVRRRPRVRLEPLMS 225 (364)
T ss_pred CCCEEEechhhh-CCC-----CceEEEEEcCCCCCCCCcccc
Confidence 999999999996 422 489999999987777654443
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=182.29 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=140.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.+....+.++++.+++++|++.+.+ ..+|+.++.+++.++. +++|+|+++++.|.+....++..|++++.+
T Consensus 59 ~~~~~~~~~l~~~lA~~~g~~~~~~-~~g~t~a~~~al~~l~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 129 (387)
T PRK09331 59 QIKKPPIADFHEDLAEFLGMDEARV-THGAREGKFAVMHSLC--------KKGDYVVLDGLAHYTSYVAAERAGLNVREV 129 (387)
T ss_pred cccChHHHHHHHHHHHHhCCCcEEE-eCCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEE
Confidence 3445579999999999999987544 4555666655555443 688999999998877666678889999999
Q ss_pred ec--CCCCCCCHHHHHHHHhcc----CCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 110 SV--RKDGTIDFSDLETKVKKN----KETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 110 ~~--~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
|. ++++.+|+++++++++++ .+++++|++++|+ ++|.+. |+++|+++||++|+++++|+++..+...+ +..
T Consensus 130 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~-~l~~I~~la~~~g~~livD~a~~~g~~~~-~~~ 207 (387)
T PRK09331 130 PKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA-DAKKVAKVAHEYGIPFLLNGAYTVGRMPV-DGK 207 (387)
T ss_pred eCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCcccCCcCC-CHH
Confidence 98 667889999999999743 2478999999996 699999 79999999999999999999986543332 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+++|++++++||+|+. ++++|++++++++++.+
T Consensus 208 ~~g~D~~~~s~~K~l~~-----~~~~G~l~~~~~~i~~~ 241 (387)
T PRK09331 208 KLGADFIVGSGHKSMAA-----SAPSGVLATTEEYADKV 241 (387)
T ss_pred HcCCCEEEeeCcccccC-----CCCEEEEEECHHHHhhc
Confidence 67899999999999974 36899999998766654
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=175.08 Aligned_cols=244 Identities=19% Similarity=0.257 Sum_probs=172.8
Q ss_pred CCcccccHHHHHHHHH----HHHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 25 PQDQARGYEQLIGELE----TDLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 25 p~e~sqG~l~~~~e~~----~~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
|.+.+-|--|++++++ ++..+.|++|. +|++|+||+-|+++++.|+. .+.++|+-.+..+|.|.
T Consensus 73 PG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall--------~Ph~RiMGLDLP~GGHL 144 (477)
T KOG2467|consen 73 PGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALL--------KPHERIMGLDLPSGGHL 144 (477)
T ss_pred CcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhc--------CCCCeeeeccCCCCCcc
Confidence 4455666668888876 46677899986 59999999999999999987 78999998887777664
Q ss_pred H---HHHhCC-------CEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEE
Q psy7357 97 A---SAQMAG-------MSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQV 165 (302)
Q Consensus 97 ~---~~~~~g-------~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~ll 165 (302)
. ...... ++--.+.+|+ +|.||.|.||+.....+|+ . +++..+.+.... |.+++++||.+.|+++
T Consensus 145 sHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk--~-iiaG~SaY~R~~-DYaR~R~Iad~~gA~L 220 (477)
T KOG2467|consen 145 SHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPK--L-IIAGTSAYSRLI-DYARFRKIADKVGAYL 220 (477)
T ss_pred ccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCc--E-EEeccccchhhc-cHHHHHHHHHhcCcee
Confidence 2 111111 2222233453 6899999999988755555 3 455545555555 7999999999999999
Q ss_pred EEecCCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC---------------CCCC-----C
Q psy7357 166 YLDGANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL---------------APFL-----P 222 (302)
Q Consensus 166 ivD~a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l---------------~~~l-----p 222 (302)
++|.||..++ +...+|-++ +|||+.++||+|. |||.|+|..++.. -++| |
T Consensus 221 m~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsLR------GPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP 293 (477)
T KOG2467|consen 221 MADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSLR------GPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFP 293 (477)
T ss_pred ehhhhhHHHHHhcccCCCcccc-cceeecccccccc------CCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccc
Confidence 9999986444 344667665 8999999999998 8999999988522 1222 4
Q ss_pred CCcccCCCCcchhhhHHHHhhHhh-HHH-HHHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccC
Q psy7357 223 VHPLSSIDSSIGAVSAAHYGSASI-LPI-SWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSA 288 (302)
Q Consensus 223 g~~~~~~~~~l~~~~a~~~~~~~~-~~~-~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~ 288 (302)
|.+-|..|+.+.++| .++.. ... ...|.+ +|. .|++++.+|++ .|.+++|+++ .
T Consensus 294 ~lQGGPHNhtIaalA----vALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTD----nHlvLvDLr~----~ 361 (477)
T KOG2467|consen 294 GLQGGPHNHTIAALA----VALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGGTD----NHLVLVDLRP----K 361 (477)
T ss_pred cccCCCCcchHHHHH----HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCcc----ceEEEEeccc----c
Confidence 444444666666655 22221 111 125544 555 79999988777 9999999996 4
Q ss_pred CCCHHHHHHHh
Q psy7357 289 NIEAVDIAKRL 299 (302)
Q Consensus 289 g~~~~~~~~~l 299 (302)
|+++..+.+-|
T Consensus 362 G~dGarvE~vl 372 (477)
T KOG2467|consen 362 GVDGARVEKVL 372 (477)
T ss_pred CCchHHHHHHH
Confidence 78888776654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=183.13 Aligned_cols=245 Identities=20% Similarity=0.211 Sum_probs=159.8
Q ss_pred cccccHHHHHHHHHH----HHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH
Q psy7357 27 DQARGYEQLIGELET----DLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~~----~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~ 98 (302)
....|+ +.++++++ +.+++|+.+. .+++++||+.|+++++.++. +++|+|+..+..+|.|...
T Consensus 70 r~~~G~-~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~--------~pgD~Il~~d~~~gGhl~H 140 (475)
T PLN03226 70 RYYGGN-EYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL--------QPHDRIMGLDLPHGGHLSH 140 (475)
T ss_pred cCcCCC-hhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC--------CCCCEEEECCCCcCcchhh
Confidence 344565 37777765 6788899776 68889999999988888876 7899999866555555432
Q ss_pred H------H--hCCCEEE--EeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEE
Q psy7357 99 A------Q--MAGMSVE--PVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 99 ~------~--~~g~~v~--~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lliv 167 (302)
. + ..+..+. .++.+ ++|.+|+++|++.+.++ +++.|++.. +.+|... |+++|+++|+++|+++++
T Consensus 141 ~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~~-S~~s~~~-D~a~i~~ia~~~ga~Llv 216 (475)
T PLN03226 141 GYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAGA-SAYPRDW-DYARMRKIADKVGALLMC 216 (475)
T ss_pred hhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEec-CcCCCcc-CHHHHHHHHHHcCCEEEE
Confidence 1 1 1121222 33344 46899999999999753 445555533 5567777 899999999999999999
Q ss_pred ecCCccccccc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC--------------CCCccc--C
Q psy7357 168 DGANMNAQVGL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL--------------PVHPLS--S 228 (302)
Q Consensus 168 D~a~~~~~~~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l--------------pg~~~~--~ 228 (302)
|+||..++.+. ..|.+ ++|++++++||||+ ||++|++++++++.+.+ ....+. +
T Consensus 217 D~AH~~Gli~~~~~~~p~~-~~Div~~t~hK~L~------GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~ 289 (475)
T PLN03226 217 DMAHISGLVAAQEAASPFE-YCDVVTTTTHKSLR------GPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQ 289 (475)
T ss_pred EchhhhCcccCCCCCCCCC-CCeEEEecCccccc------CCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccC
Confidence 99997665432 23333 69999999999997 57669999987544221 111100 1
Q ss_pred CCCcchhhhHHHHhhHhhH-HHHH-----------HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHH
Q psy7357 229 IDSSIGAVSAAHYGSASIL-PISW-----------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVD 294 (302)
Q Consensus 229 ~~~~l~~~~a~~~~~~~~~-~~~~-----------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~ 294 (302)
+..+... .|+...++..+ ...+ .|++ .|. .|++++.+++. .|.++|++.+ .|++..+
T Consensus 290 g~p~~~~-iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~----~hi~lv~~~~----~gi~~~~ 360 (475)
T PLN03226 290 GGPHNHT-IAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGGTD----NHLVLWDLRP----LGLTGSR 360 (475)
T ss_pred CCchHHH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCC----CCEEEEEccC----CCCCHHH
Confidence 2222222 22333333311 1111 1222 455 59999765555 8999999864 3688888
Q ss_pred HHHHhh
Q psy7357 295 IAKRLM 300 (302)
Q Consensus 295 ~~~~l~ 300 (302)
+.+.|-
T Consensus 361 ~~~~L~ 366 (475)
T PLN03226 361 VEKVLD 366 (475)
T ss_pred HHHHHH
Confidence 888774
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=178.24 Aligned_cols=177 Identities=21% Similarity=0.256 Sum_probs=137.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g 103 (302)
+++..+.++++++.+++++|.+..++..++|+ .+...+..++... .+++|+|+++++.|.++. ..++..|
T Consensus 55 ~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~-----~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 129 (397)
T TIGR01976 55 SRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRR-----WGPGDEVIVTRLDHEANISPWLQAAERAG 129 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhc-----CCCCCEEEEcCCchHhHHHHHHHHHHhcC
Confidence 45677889999999999999876545554454 4332233333211 157899999999887653 2356789
Q ss_pred CEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 104 MSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 104 ~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
++++.++.++ ++.+|+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++..+... ...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~-~~~ 204 (397)
T TIGR01976 130 AKVKWARVDEATGELHPDDLASLLS---PRTRLVAVTAASNTLGSIV-DLAAITELVHAAGALVVVDAVHYAPHGL-IDV 204 (397)
T ss_pred CEEEEEeccccCCCcCHHHHHHhcC---CCceEEEEeCCCCCCCccC-CHHHHHHHHHHcCCEEEEehhhhccccC-CCH
Confidence 9999999876 68899999999998 78999999998 5899998 7999999999999999999998544332 244
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.++++|++++++||+| ||++|++++++++++.+.
T Consensus 205 ~~~~~d~~~~s~~K~~-------g~~~G~l~~~~~~~~~l~ 238 (397)
T TIGR01976 205 QATGADFLTCSAYKFF-------GPHMGILWGRPELLMNLP 238 (397)
T ss_pred HHcCCCEEEEechhhc-------CCceEEEEEcHHHHhhCC
Confidence 5678999999999987 367999999987766654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=175.82 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=137.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-eeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-KISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~ 102 (302)
++...+.+.++++.+++++|.+ ..++... +++.+...++.++. . +..++++|+++++.|++.. ..++..
T Consensus 38 ~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~---~--~~~~g~~vl~~~~~~~~~~~~~~~~~~~~ 112 (373)
T cd06453 38 SARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG---R--ANKPGDEIVTSVMEHHSNIVPWQQLAERT 112 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh---h--cCCCCCEEEECcchhHHHHHHHHHHHhhc
Confidence 4567788899999999999988 4445444 44455434444433 0 0017899999999987752 234577
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|++++.++.++++.+|++++++.++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ ..
T Consensus 113 g~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~-~~ 187 (373)
T cd06453 113 GAKLKVVPVDDDGQLDLEALEKLLT---ERTKLVAVTHVSNVLGTIN-PVKEIGEIAHEAGVPVLVDGAQSAGHMPV-DV 187 (373)
T ss_pred CcEEEEeecCCCCCcCHHHHHHHhc---CCceEEEEeCcccccCCcC-CHHHHHHHHHHcCCEEEEEhhhhcCceee-ec
Confidence 9999999998888999999999998 68899999998 5899999 79999999999999999999875333222 33
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.++++|++++++||+|+ ++|+|++++++++.+.+..
T Consensus 188 ~~~~~d~~~~s~~K~~~------~~g~g~~~~~~~~~~~~~~ 223 (373)
T cd06453 188 QDLGCDFLAFSGHKMLG------PTGIGVLYGKEELLEEMPP 223 (373)
T ss_pred cccCCCEEEeccccccC------CCCcEEEEEchHHhhcCCC
Confidence 46789999999999986 3678999999887776654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=180.27 Aligned_cols=240 Identities=19% Similarity=0.192 Sum_probs=156.3
Q ss_pred HHHHH-HHHHHHHHhCCCee----eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH--------
Q psy7357 34 QLIGE-LETDLCEITGYDKI----SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-------- 100 (302)
Q Consensus 34 ~~~~e-~~~~l~~l~g~~~~----~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-------- 100 (302)
+.+++ .++.++++||++.. ++++.+|+.++.+++.++. +++|+|++++..|+++.....
T Consensus 79 ~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~--------~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~ 150 (452)
T PTZ00094 79 DKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL--------QPHDRIMGLDLPSGGHLTHGFYTAKKKVS 150 (452)
T ss_pred HHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc--------CCCCEEEecccccCCcccccccccccccc
Confidence 44443 56799999999763 4556788887766666653 678999999999988754321
Q ss_pred --hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 101 --MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 101 --~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
..++++..++++++|.+|+++|+++++++ +++.|++.+ +.+|... |+++|+++||++|+++++|++|..+..+.
T Consensus 151 ~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~~-s~~g~~~-di~~I~~i~~~~ga~l~vDaaq~~G~i~~ 226 (452)
T PTZ00094 151 ATSIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAGA-SAYPRDI-DYKRFREICDSVGAYLMADIAHTSGLVAA 226 (452)
T ss_pred cceeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEeC-CCCCCcc-CHHHHHHHHHHcCCEEEEeccchhccccC
Confidence 12355666777778999999999999743 344566655 4579888 89999999999999999999997666532
Q ss_pred ---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC----CCCCccc--CCCCcchhhhHHHHhhHhhH-H
Q psy7357 179 ---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF----LPVHPLS--SIDSSIGAVSAAHYGSASIL-P 248 (302)
Q Consensus 179 ---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~----lpg~~~~--~~~~~l~~~~a~~~~~~~~~-~ 248 (302)
..|. .++|++++++||||. ||.+|++++++++.+. +...++. .+..+...++ +...++..+ .
T Consensus 227 ~~~~~~~-~~~D~l~~S~hK~l~------GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~ia-al~~al~~~~~ 298 (452)
T PTZ00094 227 GVLPSPF-PYADVVTTTTHKSLR------GPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIA-AIAVQLKEVQS 298 (452)
T ss_pred CCCCCCC-CCCcEEEcCCccCCC------CCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHH-HHHHHHHHHhC
Confidence 1232 379999999999997 5666888888765432 1111111 0112222222 222222211 1
Q ss_pred HHH-----------HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 249 ISW-----------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 249 ~~~-----------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
..+ .|+. .|. .|+++..+++. .|..++++.. .|++..++.++|-+
T Consensus 299 ~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~----~~~~~v~~~~----~~~~~~~~~~~L~~ 356 (452)
T PTZ00094 299 PEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTD----NHLVLVDLRP----FGITGSKMEKLLDA 356 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCC----CceEeecCCc----CCCCHHHHHHHHHH
Confidence 111 2222 454 48888654333 5778887752 25788888887743
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=169.80 Aligned_cols=172 Identities=16% Similarity=0.245 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHH---HHhCCCEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPAS---AQMAGMSV 106 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~---~~~~g~~v 106 (302)
..+.++++++++++++|++..++..++|+ .++..++.++... +.+++ ++|+++...|+++... ++..|+++
T Consensus 40 ~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~----~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v 115 (353)
T TIGR03235 40 AKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARA----GEQKGKKHIITSAIEHPAVLEPIRALERNGFTV 115 (353)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh----cccCCCCeeeEcccccHHHHHHHHHHHhcCCEE
Confidence 44678999999999999986556555554 5554555444321 11234 7889998898877543 44679999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|.++++.+|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++..+...+ +..+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~~ivD~a~~~g~~~~-~~~~~~ 190 (353)
T TIGR03235 116 TYLPVDESGRIDVDELADAIR---PDTLLVSIMHVNNETGSIQ-PIREIAEVLEAHEAFFHVDAAQVVGKITV-DLSADR 190 (353)
T ss_pred EEEccCCCCcCCHHHHHHhCC---CCCEEEEEEcccCCceecc-CHHHHHHHHHHcCCEEEEEchhhcCCccc-cccccC
Confidence 999998888999999999997 67899999998 5899999 79999999999999999999986555443 445678
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
+|++++++||+++ | ||+|+++++++..
T Consensus 191 ~D~~~~s~~K~~g-p-----~g~g~l~~~~~~~ 217 (353)
T TIGR03235 191 IDLISCSGHKIYG-P-----KGIGALVIRKRGK 217 (353)
T ss_pred CCEEEeehhhcCC-C-----CceEEEEEccCcc
Confidence 9999999999753 3 4789999998754
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=175.37 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=144.6
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCe-eeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDK-ISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQ 100 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~-~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~ 100 (302)
..++-..+.++++++.+++++|++. .++ ...+++.+...++.++...+ +++++|++.+..|+++.. .++
T Consensus 36 ~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~-----~~g~~vl~~~~~~~s~~~~~~~~~~ 110 (371)
T PF00266_consen 36 HRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPL-----KPGDEVLVTSNEHPSNRYPWEEIAK 110 (371)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHG-----TTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccc-----ccccccccccccccccccccccccc
Confidence 3455678899999999999999987 554 45555566655555553211 678999999999887762 344
Q ss_pred hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 101 MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 101 ~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
..|++++.+|.+.++.+|++++++.|+ +++++|++++- |.+|++. |+++|+++||++|+++++|+++.++...+
T Consensus 111 ~~g~~v~~i~~~~~~~~~~~~~~~~l~---~~~~lv~~~~~~~~tG~~~-pi~~I~~~~~~~~~~~~vD~~~~~g~~~i- 185 (371)
T PF00266_consen 111 RKGAEVRVIPADPGGSLDLEDLEEALN---PDTRLVSISHVENSTGVRN-PIEEIAKLAHEYGALLVVDAAQSAGCVPI- 185 (371)
T ss_dssp HTTEEEEEEEEGTTSSCSHHHHHHHHH---TTESEEEEESBETTTTBBS-SHHHHHHHHHHTTSEEEEE-TTTTTTSS--
T ss_pred cchhhhccccccccchhhhhhhhhhhc---cccceEEeecccccccEEe-eeceehhhhhccCCceeEechhccccccc-
Confidence 789999999998889999999999998 89999988885 6789999 79999999999999999999987777664
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+..++++|++++++|| |+. +||+|++++++++.+++
T Consensus 186 d~~~~~~D~~~~s~~K-l~g-----p~G~g~l~v~~~~~~~~ 221 (371)
T PF00266_consen 186 DLDELGADFLVFSSHK-LGG-----PPGLGFLYVRPEAIERL 221 (371)
T ss_dssp -TTTTTESEEEEESTS-TTS-----SSTEEEEEEEHHHHHHH
T ss_pred cccccccceeeecccc-cCC-----CCchhhheehhhhhhcc
Confidence 5678899999999999 874 36899999999776666
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=172.95 Aligned_cols=176 Identities=19% Similarity=0.279 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCE
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMS 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~ 105 (302)
..+.++++++.+++++|++ ..++...+|+ .+...++.++.. ...+++++|+++++.|+++.. .++..|++
T Consensus 60 ~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~----~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 60 ATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGD----SNLKAGDEIVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhh----hcCCCCCEEEECcchhhHHHHHHHHHHHhcCcE
Confidence 4467889999999999997 4445545554 443233333210 001578999999999887532 34578999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 136 ~~~v~~~~~~~~~~~~l~~~i~---~~~~lv~~~~~~~~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~g~~~~-~~~~~ 210 (403)
T TIGR01979 136 LKFIPLDDDGTLDLDDLEKLLT---EKTKLVAITHVSNVLGTVN-PVEEIAKLAHQVGAKVLVDGAQAVPHMPV-DVQAL 210 (403)
T ss_pred EEEEecCCCCCCCHHHHHHHhc---cCCeEEEEEcccccccccC-CHHHHHHHHHHcCCEEEEEchhhcCcccc-Ccccc
Confidence 9999998889999999999998 78999999997 5899999 79999999999999999999985543322 34567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|++++++||+++ | +|+|++++++++.+.++
T Consensus 211 ~~d~~~~s~~K~~g-p-----~G~g~l~~~~~~~~~~~ 242 (403)
T TIGR01979 211 DCDFYVFSGHKMYG-P-----TGIGVLYGKEELLEQMP 242 (403)
T ss_pred CCCEEEEecccccC-C-----CCceEEEEchHHHhcCC
Confidence 89999999999764 3 46899999988777665
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-20 Score=174.31 Aligned_cols=180 Identities=18% Similarity=0.244 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHHHHHHhCC-CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGY-DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~-~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g 103 (302)
+-..+.++++++.+++++|. +..++..++|+ ++...++.++.. . ..+++|+|++++..|++.. ..++..|
T Consensus 63 ~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~---~-~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 138 (406)
T PRK09295 63 AQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGN---S-NVRAGDNIIISEMEHHANIVPWQMLCARVG 138 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhh---h-cCCCcCEEEECcchhhHHHHHHHHHHHHcC
Confidence 34567889999999999998 44455555555 443233333210 0 0157899999999987652 2456789
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++++.+|.++++.+|+++|+++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|++|..+...+ +..
T Consensus 139 ~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~l~~~~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~~-~~~ 213 (406)
T PRK09295 139 AELRVIPLNPDGTLQLETLPALFD---ERTRLLAITHVSNVLGTEN-PLAEMIALAHQHGAKVLVDGAQAVMHHPV-DVQ 213 (406)
T ss_pred cEEEEEecCCCCCCCHHHHHHhcC---CCcEEEEEecchhcccccC-CHHHHHHHHHHcCCEEEEEcccccCcccc-Cch
Confidence 999999998888999999999998 78999999998 5899999 79999999999999999999986554333 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++++|++++++||.++ | +|+|++++++++.+.++..
T Consensus 214 ~~~~D~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~~~~ 249 (406)
T PRK09295 214 ALDCDFYVFSGHKLYG-P-----TGIGILYVKEALLQEMPPW 249 (406)
T ss_pred hcCCCEEEeehhhccC-C-----CCcEEEEEchHhHhhCCCc
Confidence 6789999999999443 3 4689999998887777643
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=178.01 Aligned_cols=181 Identities=17% Similarity=0.295 Sum_probs=149.4
Q ss_pred ccccHHHHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccH-HHHHhCC
Q psy7357 28 QARGYEQLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNP-ASAQMAG 103 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~-~~~~~~g 103 (302)
.+.-+..++.++.+.++.+++.+ .+.+.+++|+.+.+|++.++. +++|+||+... .||... ..++.+|
T Consensus 32 ~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~--------~pgdkVLv~~nG~FG~R~~~ia~~~g 103 (383)
T COG0075 32 RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV--------EPGDKVLVVVNGKFGERFAEIAERYG 103 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeCChHHHHHHHHHHHhC
Confidence 45678889999999999999988 456667888888778887766 68888777654 666554 3788999
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
.+++.+..++.-.+|+++++++++++ ++.++|.+++ -++||+++ |+++|+++|++||+++|||++..++... ..+.
T Consensus 104 ~~v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvln-pl~~I~~~~k~~g~l~iVDaVsS~Gg~~-~~vd 180 (383)
T COG0075 104 AEVVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTGVLN-PLKEIAKAAKEHGALLIVDAVSSLGGEP-LKVD 180 (383)
T ss_pred CceEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcccccC-cHHHHHHHHHHcCCEEEEEecccCCCcc-cchh
Confidence 99999999887889999999999854 4566666666 36899999 8999999999999999999975444333 4678
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
+||+|+++.+++|+|+.| ||+|+++++++.++.+..+
T Consensus 181 ~wgiDv~itgSQK~l~~P-----PGla~v~~S~~a~e~~~~~ 217 (383)
T COG0075 181 EWGIDVAITGSQKALGAP-----PGLAFVAVSERALEAIEER 217 (383)
T ss_pred hcCccEEEecCchhccCC-----CccceeEECHHHHHHHhcC
Confidence 999999999999999987 8999999998877777654
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=173.98 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCE
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMS 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~ 105 (302)
..+.++++++.+++++|++ ..++..++|+ ++...++.++. . ...+++|+||++++.|+++. ..++..|++
T Consensus 58 ~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~---~-~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~ 133 (398)
T TIGR03392 58 LTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYA---R-PRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAK 133 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhh---h-ccCCCCCEEEECCcchhHHHHHHHHHHHHcCcE
Confidence 4567889999999999985 4455444444 54433333331 0 00157899999999987642 245788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 134 v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~~-~~~~~ 208 (398)
T TIGR03392 134 VVKLPIGADLLPDIRQLPELLT---PRTRILALGQMSNVTGGCP-DLARAITLAHQYGAVVVVDGAQGVVHGPP-DVQAL 208 (398)
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCceEEEEECccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCCCC-Chhhc
Confidence 9999998888899999999998 78999999998 5899999 79999999999999999999985443322 33456
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++|++++++||.++ | +|+|++++++++.++++.
T Consensus 209 ~~d~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~~~ 241 (398)
T TIGR03392 209 DIDFYAFSGHKLYG-P-----TGIGVLYGKTELLEAMPP 241 (398)
T ss_pred CCCEEEEecccccC-C-----CceEEEEEcHHHHhhCCC
Confidence 89999999999553 3 469999999888777653
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=173.31 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHHHHHHhCC-CeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGY-DKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~-~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g 103 (302)
+...+.++++++.+++++|+ +..++..++| +++...++.++. . ...+++|+||++++.|+++. ..++..|
T Consensus 59 ~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~---~-~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 134 (401)
T PRK10874 59 QRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYA---R-PRLQPGDEIIVSEAEHHANLVPWLMVAQQTG 134 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhh---h-ccCCCcCEEEECCcchHHHHHHHHHHHHHhC
Confidence 44567889999999999999 5555554444 454433333331 0 00157899999999987642 2456789
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++++.+|.++++.+|++++++.++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..
T Consensus 135 ~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~l~~~~g~~~ivD~a~~~g~~~~-~~~ 209 (401)
T PRK10874 135 AKVVKLPLGADRLPDVDLLPELIT---PRTRILALGQMSNVTGGCP-DLARAITLAHQAGMVVMVDGAQGAVHFPA-DVQ 209 (401)
T ss_pred CEEEEEecCCCCcCCHHHHHHhcC---cCcEEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEECCcccccccC-Cch
Confidence 999999998888999999999998 78999999998 5899999 79999999999999999999985444332 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+++|++++++||.++ | +|+|++++++++.+.++.
T Consensus 210 ~~~~d~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~~~ 244 (401)
T PRK10874 210 ALDIDFYAFSGHKLYG-P-----TGIGVLYGKSELLEAMSP 244 (401)
T ss_pred hcCCCEEEEecccccC-C-----CccEEEEEchHHHhcCCC
Confidence 6789999999999553 3 478999999888777653
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=172.44 Aligned_cols=176 Identities=17% Similarity=0.262 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc--HHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN--PASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~--~~~~~~~g~~ 105 (302)
....+.++++++.+++++|.+. ..+.+.+|++++..++.++. .++++|+++++.|.++ ...++..|.+
T Consensus 28 ~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~g~~ 99 (356)
T cd06451 28 PEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--------EPGDKVLVGVNGVFGDRWADMAERYGAD 99 (356)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--------CCCCEEEEecCCchhHHHHHHHHHhCCC
Confidence 3567889999999999999953 24456666766544444432 5789999988766553 3456788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|++++++.+++ .++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+... .++..+
T Consensus 100 ~~~v~~~~~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~-~~~~i~~~a~~~~~~li~D~~~~~g~~~-~~~~~~ 175 (356)
T cd06451 100 VDVVEKPWGEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLN-PLEGIGALAKKHDALLIVDAVSSLGGEP-FRMDEW 175 (356)
T ss_pred eEEeecCCCCCCCHHHHHHHHhc--cCCCEEEEeccCCCccccc-CHHHHHHHHHhcCCEEEEeeehhccCcc-cccccc
Confidence 99999987788999999999982 27888999888 5899998 7999999999999999999987543322 245567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++.++||+|+.| +|+|+++.++++++.+.
T Consensus 176 ~~d~~~~s~~K~l~~p-----~g~G~l~~~~~~~~~~~ 208 (356)
T cd06451 176 GVDVAYTGSQKALGAP-----PGLGPIAFSERALERIK 208 (356)
T ss_pred CccEEEecCchhccCC-----CCcceeEECHHHHHHHH
Confidence 8999999999999854 47899999987765543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=180.49 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=140.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~ 104 (302)
+.++.+.++++++++++++|.+. ..+.+++|+.++++++..+. ++||+|+++++.|.+.. ..++..|+
T Consensus 37 ~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~--------~~Gd~Vlv~~~~~~~~~~~~~~~~~g~ 108 (401)
T PLN02409 37 SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL--------SPGDKVVSFRIGQFSLLWIDQMQRLNF 108 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEeCCCchhHHHHHHHHHcCC
Confidence 56788999999999999999864 35566666665544443332 68999999998775553 35678899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHH--HHHhCCEEEEecCCcccccccCC
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCEL--IHEHGGQVYLDGANMNAQVGLCR 180 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~i--a~~~g~llivD~a~~~~~~~~~~ 180 (302)
+++.++.++++.+|+++++++++++. +++++|+++++ |++|.+. |+++|+++ ||++|+++++|+++..+... .+
T Consensus 109 ~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~-id 186 (401)
T PLN02409 109 DVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN-DLAGVRKLLDCAQHPALLLVDGVSSIGALD-FR 186 (401)
T ss_pred ceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC-CHHHHHHHHhhhccCcEEEEEcccccCCcc-cc
Confidence 99999998766789999999998421 27889999886 6899999 79999999 99999999999987544332 24
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..++++|+++.++||||+.| ||+|++++++++++++
T Consensus 187 ~~~~~~D~~~~s~~K~l~~P-----~G~G~l~~~~~~~~~~ 222 (401)
T PLN02409 187 MDEWGVDVALTGSQKALSLP-----TGLGIVCASPKALEAS 222 (401)
T ss_pred ccccCccEEEEcCccccCcC-----CCcceeEECHHHHHHH
Confidence 56789999999999999854 5799999998776554
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=175.15 Aligned_cols=188 Identities=16% Similarity=0.206 Sum_probs=142.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCCeee---EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYDKIS---FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~---~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
.|+......+.+.+..+++.+++++++|++... +++++|++++..++.+.|.+ .++++|++++.+|.+...
T Consensus 52 np~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~------~~~~~ii~s~~~H~Sv~k 125 (380)
T PRK02769 52 DPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL------FPDGTLYYSKDTHYSVSK 125 (380)
T ss_pred CccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh------CCCcEEEeCCCceehHHH
Confidence 344332233467889999999999999997432 34455566654444333322 357899999999999888
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhC---CEEEEecCCcc
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHG---GQVYLDGANMN 173 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g---~llivD~a~~~ 173 (302)
.++..|.+.+.||++++|.+|+++|++++++.+.+|.+|+++.+| .+|.++ |+++|+++|+++| +++++|+|+..
T Consensus 126 a~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~id-pi~~I~~i~~~~g~~~~~lHVDaA~gg 204 (380)
T PRK02769 126 IARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAID-NIKEIQEILKKIGIDDYYIHADAALSG 204 (380)
T ss_pred HHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCCceEEEEEecccc
Confidence 888889999999998899999999999998443358888888875 799999 8999999999998 69999999855
Q ss_pred ccccc------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 174 AQVGL------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 174 ~~~~~------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....+ .+.. .++|.++.++||+++.| .+.|+++++++..+.+
T Consensus 205 ~~~p~~~~~~~~d~~-~~vDsis~s~HK~~~~P-----~g~G~l~~r~~~~~~~ 252 (380)
T PRK02769 205 MILPFVNNPPPFSFA-DGIDSIAISGHKFIGSP-----MPCGIVLAKKKYVERI 252 (380)
T ss_pred eeecccCccccCCcc-CCCCEEEECCcccCCCC-----CCcEEEEEehhhhhhc
Confidence 44321 1112 28999999999988755 2688999998766554
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=169.50 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCE
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMS 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~ 105 (302)
..+.++++++.+++++|++ ..++..++|+ ++...++.++. + ...+++|+|+++++.|++... .++..|++
T Consensus 74 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~-~---~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~ 149 (424)
T PLN02855 74 ATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWG-L---ANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAV 149 (424)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhh-h---hcCCCcCEEEECCCccHHHHHHHHHHHHHcCCE
Confidence 3456789999999999995 3445555554 44322222210 0 001578999999999876532 35678999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|++++++.++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 150 v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~a~~~g~~~~-~~~~~ 224 (424)
T PLN02855 150 LKFVGLTPDEVLDVEQLKELLS---EKTKLVATHHVSNVLGSIL-PVEDIVHWAHAVGAKVLVDACQSVPHMPV-DVQTL 224 (424)
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCceEEEEeCccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCcCC-Cchhc
Confidence 9999998778899999999998 78999999998 5899999 79999999999999999999986554433 34567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++|++++++|| +..| +|+|++++++++.++++..
T Consensus 225 ~~d~~~~s~~K-~~gp-----~G~G~l~~~~~~~~~~~p~ 258 (424)
T PLN02855 225 GADFLVASSHK-MCGP-----TGIGFLWGKSDLLESMPPF 258 (424)
T ss_pred CCCEEEeeccc-ccCC-----CccEEEEEchhhhhcCCCE
Confidence 89999999999 4322 4799999999888777644
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=169.53 Aligned_cols=167 Identities=20% Similarity=0.189 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..+.++|+.+++++|.+.+.+.+++++.++.++++++. +++|+|+++++.|.+....+...|.++++++.+.
T Consensus 59 g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~--------~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~ 130 (294)
T cd00615 59 GPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC--------GPGDKILIDRNCHKSVINGLVLSGAVPVYLKPER 130 (294)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC--------CCCCEEEEeCCchHHHHHHHHHCCCEEEEecCcc
Confidence 35899999999999998766555555566656665543 6899999999999887777788899999998753
Q ss_pred C------CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc--cc-c-CCCCc
Q psy7357 114 D------GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ--VG-L-CRPGD 183 (302)
Q Consensus 114 ~------g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~-~-~~p~~ 183 (302)
+ +.+|+++++++++++ +++++|++++||++|.+. |+++|+++||++|+++++|+++.... .. + .....
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p~~~G~~~-dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~ 208 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIEH-PDAKAAVITNPTYYGICY-NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM 208 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHhC-CCceEEEEECCCCCCEec-CHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh
Confidence 2 378999999999743 578999999999999999 89999999999999999999974321 11 1 12234
Q ss_pred cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSH 216 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~ 216 (302)
+++|+++.|+||+++ || +.|++.++++
T Consensus 209 ~~~div~~S~hK~l~------g~~~~~~l~~~~~ 236 (294)
T cd00615 209 AGADIVVQSTHKTLP------ALTQGSMIHVKGD 236 (294)
T ss_pred cCCcEEEEchhcccc------hHhHHHHHHhCCC
Confidence 689999999999875 55 4577777655
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=177.19 Aligned_cols=179 Identities=20% Similarity=0.228 Sum_probs=137.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--e-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--I-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
++|..++++.+.+.+.+.+|.+. . ++..+.|+ +|...+++++. ++||+|++++|.|.+|.......|.
T Consensus 64 ~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~--------~pGDeVlip~P~Y~~y~~~~~~~gg 135 (393)
T COG0436 64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL--------NPGDEVLIPDPGYPSYEAAVKLAGG 135 (393)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCCcCHHHHHHhcCC
Confidence 78999999999999999998543 2 37777776 55544555544 7999999999999999999999999
Q ss_pred EEEEeecC---CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc-ccccc
Q psy7357 105 SVEPVSVR---KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQVG 177 (302)
Q Consensus 105 ~v~~i~~~---~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~~ 177 (302)
+++.+|++ .+..+|+++|+++++ ++|++|++++| ||||.+ .+.+++|+++|++||++++.|.++. +...+
T Consensus 136 ~~v~v~l~~~~~~f~~d~~~l~~~i~---~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 136 KPVPVPLDEEENGFKPDLEDLEAAIT---PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred EEEEEeCCcCccCCcCCHHHHHhhcC---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 99999975 257899999999999 79999999999 599987 2369999999999999999999862 11211
Q ss_pred --cCCCCccC--Cc--EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 178 --LCRPGDYG--SD--VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 178 --~~~p~~~g--aD--iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
..+..+.. .| |.+.|.+|+++ +.|||+||++++ +++++.+.
T Consensus 213 ~~~~s~~~~~~~~~~~i~i~s~SK~~~----mtGwRvG~~v~~~~~l~~~~~ 260 (393)
T COG0436 213 AEHPSILELAGARDRTITINSFSKTYG----MTGWRIGWVVGPPEELIAALR 260 (393)
T ss_pred CCcCCHhhcCCCcceEEEEeccccccc----ccccceeEeecChHHHHHHHH
Confidence 11111111 12 44445566555 569999999999 66655543
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=174.19 Aligned_cols=173 Identities=18% Similarity=0.288 Sum_probs=140.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v 106 (302)
......+++.|+.++++.|+|..+++.++|++ | +..++++.+....+.+..++||+...+|++.... .+..|++|
T Consensus 81 w~~~~~~E~aR~~VAklInAd~~dIiFts~AT-E-s~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~V 158 (428)
T KOG1549|consen 81 WKAEDAVEAAREQVAKLINADPSDIVFTSGAT-E-SNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEV 158 (428)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCcEEEeCCch-H-HHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEE
Confidence 34445589999999999999987787777774 2 5566666653322221222899999999987653 45779999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+++|++.+|.+|++.+++.|+ ++|++|.+..- |..|+++ |++||.++|++.|+.|++|+||.++...+ +..+++
T Consensus 159 t~lpv~~~~~~d~~~~~~~i~---~~T~lv~I~~Vnn~~gv~~-Pv~EI~~icr~~~v~v~~DaAQavG~i~v-DV~eln 233 (428)
T KOG1549|consen 159 TYLPVEDSGLVDISKLREAIR---SKTRLVSIMHVNNEIGVLQ-PVKEIVKICREEGVQVHVDAAQAVGKIPV-DVQELN 233 (428)
T ss_pred EEeccCccccccHHHHHHhcC---CCceEEEEEecccCccccc-cHHHHHHHhCcCCcEEEeehhhhcCCccc-cHHHcC
Confidence 999999889999999999999 89998888775 5789999 79999999999999999999997777664 667899
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+|+++.++||+++ -|++|++++++
T Consensus 234 ~D~~s~s~HK~yg------p~~iGaLYvr~ 257 (428)
T KOG1549|consen 234 ADFLSISAHKIYG------PPGIGALYVRR 257 (428)
T ss_pred chheeeecccccC------CCcceEEEEcc
Confidence 9999999999886 24699999996
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=173.09 Aligned_cols=187 Identities=22% Similarity=0.222 Sum_probs=149.5
Q ss_pred ccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEE
Q psy7357 11 PCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCL 86 (302)
Q Consensus 11 ~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vl 86 (302)
.++.+.++.|++ ..|..++...+++++++++|... .++..++|+ ++...+++++. ++||+|+
T Consensus 56 ~~~~~~~~qYt~------~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~--------~~GDeVi 121 (420)
T KOG0257|consen 56 AAKEPSTNQYTR------GYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL--------NPGDEVI 121 (420)
T ss_pred Hhccchhccccc------cCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc--------CCCCEEE
Confidence 344444455554 57899999999999999888543 367778888 55544555544 7999999
Q ss_pred EcCCCCcccHHHHHhCCCEEEEeecC--------CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHH
Q psy7357 87 IPVSAHGTNPASAQMAGMSVEPVSVR--------KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVC 155 (302)
Q Consensus 87 v~~~~hg~~~~~~~~~g~~v~~i~~~--------~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~ 155 (302)
|.+|.|..|.....+.|.+++.+|.. +++.+|.++++.+++ ++|++|++++| |++|.+ .+.+++|+
T Consensus 122 i~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfsReeLe~ia 198 (420)
T KOG0257|consen 122 VFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT---EKTKAIILNTPHNPTGKVFSREELERIA 198 (420)
T ss_pred EecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc---CCccEEEEeCCCCCcCcccCHHHHHHHH
Confidence 99999999988999999999999976 256899999999999 89999999999 699976 33699999
Q ss_pred HHHHHhCCEEEEecCCc---------ccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 156 ELIHEHGGQVYLDGANM---------NAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~---------~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++|++||.++|.|+++- .....+ |+.+..-+-++|.+|+|+ +.||++|+++.++.+...
T Consensus 199 ~l~~k~~~lvisDevYe~~v~d~~~h~r~asl--Pgm~ertitvgS~gKtf~----~TGWrlGW~igp~~L~~~ 266 (420)
T KOG0257|consen 199 ELCKKHGLLVISDEVYEWLVYDGNKHIRIASL--PGMYERTITVGSFGKTFG----VTGWRLGWAIGPKHLYSA 266 (420)
T ss_pred HHHHHCCEEEEEhhHhHHHhhCCCcceeeecC--CchhheEEEeccccceee----eeeeeeeeeechHHhhhh
Confidence 99999999999998852 222222 787877888898899987 459999999997766554
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=168.74 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=138.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeee---EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKIS---FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~---~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
....++..++.+++++++|++... +++++|++|+..++.+.|.. .++.+|++++.+|.+....++..|.++
T Consensus 62 ~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~------~~~~~vi~s~~~H~Sv~kaa~~lg~~~ 135 (374)
T PLN03032 62 VHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMEA 135 (374)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh------CCCcEEEeCCCceeHHHHHHHHcCCCC
Confidence 478899999999999999997543 45556666664444443321 244689999999988888888899999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC-----CEEEEecCCcccccccC-
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG-----GQVYLDGANMNAQVGLC- 179 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g-----~llivD~a~~~~~~~~~- 179 (302)
+.||++++|.+|+++|+++|+++..++.+|+++.. |.+|.++ |+++|+++|+++| +++++|+|+..+...+.
T Consensus 136 ~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~id-pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~ 214 (374)
T PLN03032 136 VKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVD-DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVS 214 (374)
T ss_pred eEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCC-CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccC
Confidence 99999999999999999999843335777777665 4899999 7999999999997 48999998754433320
Q ss_pred -C---CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 -R---PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 -~---p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. ....++|.++.++||.++.|. ++|++++++++.+.+
T Consensus 215 ~~~~~~~~~~vDSis~s~HK~~g~P~-----g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 215 RAPEVTFRKPIGSVSVSGHKFLGCPM-----PCGVALTRKKHVKAL 255 (374)
T ss_pred CCcccCCCcCCcEEEECcccccCCCc-----CeEEEEEEchhhHhh
Confidence 0 112468999999999776553 678999997665544
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=162.27 Aligned_cols=172 Identities=17% Similarity=0.283 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v 106 (302)
-..+.++++++.+++++|.+..++..++|+ +++..++.++.. .. .+++++|++++..|+++..+ ++..|+++
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~---~~-~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v 115 (381)
T PRK02948 40 TASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN---AL-PQNKKHIITTPMEHASIHSYFQSLESQGYTV 115 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH---hc-cCCCCEEEECCcccHHHHHHHHHHHhCCCEE
Confidence 345678999999999999877666555554 554344433321 11 13578999999999877553 45679999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|+++++.+|+++|++.++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ +..+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~vivD~~~~~g~~~~-~~~~~~ 190 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAIT---PDTVLASIQHANSEIGTIQ-PIAEIGALLKKYNVLFHSDCVQTFGKLPI-DVFEMG 190 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcC---CCCEEEEEECCcCCcEeeh-hHHHHHHHHHHcCCEEEEEChhhcccccc-CcccCC
Confidence 999998889999999999997 78899999998 5899999 79999999999999999998875554332 345678
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+|+++.++||+++ | +|+|++++++++
T Consensus 191 ~d~~~~s~~K~~g-p-----~G~G~l~~~~~~ 216 (381)
T PRK02948 191 IDSLSVSAHKIYG-P-----KGVGAVYINPQV 216 (381)
T ss_pred CCEEEecHHhcCC-C-----CcEEEEEEcCCC
Confidence 9999999999764 3 468999998765
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=170.03 Aligned_cols=174 Identities=17% Similarity=0.296 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v~~ 108 (302)
.+.++++++.+++++|++...+... +|+.++..++.++.... .+++++|++++.+|+++... ++..|++++.
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~----~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~ 121 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFY----KSKGNHIITSKTEHKAVLDTCRYLEREGFEVTY 121 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEECCCccHHHHHHHHHHHhcCCEEEE
Confidence 4678899999999999976545444 44556544444443211 14688999999998876543 3457999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+|+++++.+|+++++++++ +++++|+++++ |++|.+. |+++|+++||++|+++++|+++..+...+ +..++++|
T Consensus 122 v~~~~~~~~d~~~l~~~l~---~~~~lv~v~~~~n~tG~~~-~~~~I~~l~~~~g~~livD~a~a~g~~~~-~~~~~~~D 196 (402)
T TIGR02006 122 LPPKSNGLIDLEELKAAIR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERKVFFHVDAAQSVGKIPI-NVNELKVD 196 (402)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECCCcCceecc-cHHHHHHHHHHcCCEEEEEcchhcCCccc-CccccCCC
Confidence 9998889999999999997 67899999998 5899999 79999999999999999999986554432 44567899
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++++++||.++ | +|+|+++++++...++
T Consensus 197 ~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~ 224 (402)
T TIGR02006 197 LMSISGHKIYG-P-----KGIGALYVRRKPRVRL 224 (402)
T ss_pred EEEEehhhhcC-C-----CceEEEEEccCCCCCC
Confidence 99999999653 2 4799999997655444
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=170.08 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++++|++.. +...+|++++..++.++. +++|+|+++++.|.+....++..|++++.+|.++
T Consensus 44 ~~~~~l~~~la~~~g~~~i-~~~~g~t~al~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 114 (361)
T cd06452 44 PPIKDFHHDLAEFLGMDEA-RVTPGAREGKFAVMHSLC--------EKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTG 114 (361)
T ss_pred chHHHHHHHHHHHcCCceE-EEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCC
Confidence 5688999999999999543 333444455544444432 6789999998888666666788999999999987
Q ss_pred CC--CCCHHHHHHHHhccC----CCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 114 DG--TIDFSDLETKVKKNK----ETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 114 ~g--~iD~~~l~~~i~~~~----~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
++ .+|++++++++++.. +++++|++++|| ++|.+. |+++|.++|+++|+++++|+++..+... ..+.++++
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~-~~~~~~~~ 192 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH-DAKKIAKVCHEYGVPLLLNGAYTVGRMP-VSGKELGA 192 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec-cHHHHHHHHHHcCCeEEEECCcccCCcC-CCHHHcCC
Confidence 65 899999999997321 368999999995 799998 8999999999999999999997543222 23446789
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+++.++||+|+. ++++|++++++++++++
T Consensus 193 d~~~~s~~K~l~~-----~~~~G~l~~~~~~~~~l 222 (361)
T cd06452 193 DFIVGSGHKSMAA-----SAPIGVLATTEEWADIV 222 (361)
T ss_pred CEEEecCCccccC-----CCCeEEEEECHHHHHHH
Confidence 9999999999973 35899999998776655
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=169.27 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=133.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCE-EEEcCCCCccc-HHHHHhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNV-CLIPVSAHGTN-PASAQMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~-Vlv~~~~hg~~-~~~~~~~g~~ 105 (302)
.+.+.++++++.+++++|++. ..+.+.+|+.+..+++.++. .++++ |++.+..|+.. ...++..|++
T Consensus 32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~a~~~g~~ 103 (363)
T TIGR02326 32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--------PKDGKLLVVINGAYGARIVQIAEYLGIP 103 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--------CCCCeEEEEeCChhhHHHHHHHHHcCCc
Confidence 577889999999999999964 23455666777655555543 34454 55566666654 3456788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|+++++++++++ ++++.|.++++ |++|++. |+++|+++||++|+++++|+++..+... .+..++
T Consensus 104 ~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~i~~I~~l~~~~g~~livD~~~~~g~~~-~~~~~~ 180 (363)
T TIGR02326 104 HHVVDTGEVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILN-PIEAVAKLAHRHGKVTIVDAMSSFGGIP-IDIAEL 180 (363)
T ss_pred eEEEeCCCCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccC-cHHHHHHHHHHcCCEEEEEccccccCcc-cchhhc
Confidence 999999888899999999999743 35566666664 6899999 7999999999999999999987543322 244567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|++++++||+|+.| ||+|+++++++.++++
T Consensus 181 ~~D~~~~s~~K~l~~p-----~G~G~l~~~~~~~~~~ 212 (363)
T TIGR02326 181 HIDYLISSANKCIQGV-----PGFGFVIARQAELAAC 212 (363)
T ss_pred CccEEEecCccccccC-----CcceEEEECHHHHHHh
Confidence 8999999999999743 6889999998766544
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=168.68 Aligned_cols=172 Identities=13% Similarity=0.271 Sum_probs=133.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~ 105 (302)
+-+.+.++++++++++++|.+...+. ..+|++++..++.++... ..++++|++++..|+++.. .++..|++
T Consensus 38 ~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~-----~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~ 112 (379)
T TIGR03402 38 GEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA-----QPEKRHIITTAVEHPAVLSLCQHLEKQGYK 112 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh-----cCCCCeEEEcccccHHHHHHHHHHHHcCCE
Confidence 44577899999999999999865444 445556554444443311 1346889999989877643 23457999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.+++|.+|+++++++++ +++++|+++++ |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 113 v~~v~~~~~g~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~~~~~g~~~~-~~~~~ 187 (379)
T TIGR03402 113 VTYLPVDEEGRLDLEELRAAIT---DDTALVSVMWANNETGTIF-PIEEIGEIAKERGALFHTDAVQAVGKIPI-DLKEM 187 (379)
T ss_pred EEEEccCCCCcCCHHHHHHhcC---CCcEEEEEEcccCCeeecc-cHHHHHHHHHHcCCEEEEECccccccccc-CcccC
Confidence 9999998888999999999998 78899999987 5899999 79999999999999999999986544332 44568
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
++|++++++|| +..| +|+|+++++++.
T Consensus 188 ~~D~~~~s~~K-~~gp-----~G~g~l~v~~~~ 214 (379)
T TIGR03402 188 NIDMLSLSGHK-LHGP-----KGVGALYIRKGT 214 (379)
T ss_pred CCCEEEEcHHH-cCCC-----CceEEEEECCCC
Confidence 99999999999 5533 479999998754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=164.42 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=127.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCC---------------EEEEcCCCCccc
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRN---------------VCLIPVSAHGTN 95 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d---------------~Vlv~~~~hg~~ 95 (302)
+..+.++++++++++++|.+.+ +...+++.|+..+++++. ++|| +|+++.+.+..+
T Consensus 42 ~~~~~~~~~~~~~a~~~g~~~~-~~~~g~t~al~~al~al~--------~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~ 112 (363)
T TIGR01437 42 EIKELVNKTGEYIANLLGVEDA-VIVSSASAGIAQSVAAVI--------TRGNRYLVENLHDSKIEVNEVVLPKGHNVDY 112 (363)
T ss_pred CHHHHHHHHHHHHHHhhCCCeE-EEEcCHHHHHHHHHHHHh--------cCCCcchhhcccccccccceEEEECccchhc
Confidence 3557889999999999999865 556667777656666553 3455 888887533322
Q ss_pred ----HHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEE-EecC-CCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 96 ----PASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLM-ITYP-STFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 96 ----~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~-i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
.......|+++++++. ++.+|+++++++++ ++|++++ +++| |++|.+. |+++|+++||++|+++++|+
T Consensus 113 ~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~---~~t~ai~~v~~~~~~~g~~~-~~~~i~~~a~~~gi~vivD~ 186 (363)
T TIGR01437 113 GAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAIT---EKTAAILYIKSHHCVQKSML-SVEDAAQVAQEHNLPLIVDA 186 (363)
T ss_pred CCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcC---hhceEEEEEecCCCCcCCcC-CHHHHHHHHHHcCCeEEEEC
Confidence 3456678999999986 35699999999998 7888777 4554 6889888 79999999999999999999
Q ss_pred CCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 170 ANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 170 a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|.. .+..+..+|+|++++|.||+|+ ||.+|+++.++++++.+
T Consensus 187 a~~~---~~~~~~~~g~D~~~~S~~K~l~------gp~~G~l~~~~~~i~~~ 229 (363)
T TIGR01437 187 AAEE---DLQKYYRLGADLVIYSGAKAIE------GPTSGLVLGKKKYIEWV 229 (363)
T ss_pred CCCC---chHHHHHcCCCEEEEeCCcccC------CCceEEEEEcHHHHHHH
Confidence 9852 1122345688999999999885 78889999887666554
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=166.21 Aligned_cols=165 Identities=22% Similarity=0.221 Sum_probs=125.8
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH-----HHhCCCEEEEeecC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS-----AQMAGMSVEPVSVR 112 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~-----~~~~g~~v~~i~~~ 112 (302)
..++.+++++|.+...+.+++|++|+.+++.++. ++||+|+++++.|+.+... ++..|.+++.++++
T Consensus 69 ~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 140 (402)
T cd00378 69 LAIERAKKLFGAEYANVQPHSGSQANLAVYFALL--------EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYG 140 (402)
T ss_pred HHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhc--------CCCCEEEEecCccCccccccccccccccceeEEEecCC
Confidence 3667889999998877777778877655555553 6899999999998876443 55678877777765
Q ss_pred C---CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc---ccCCCCccCC
Q psy7357 113 K---DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV---GLCRPGDYGS 186 (302)
Q Consensus 113 ~---~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~---~~~~p~~~ga 186 (302)
. ++.+|++++++++.+ +++++|++++|++ |... |+++|+++||++|+++++|++|..+.. ....+.. ++
T Consensus 141 ~~~~~~~id~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~ 215 (402)
T cd00378 141 VDPETGLIDYDALEKMALE--FKPKLIVAGASAY-PRPI-DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GA 215 (402)
T ss_pred cCcccCCcCHHHHHHHHHh--CCCCEEEecCccc-CCCc-CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CC
Confidence 3 578999999999963 4678888888753 6777 799999999999999999998754332 1122223 68
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
|+++.++||+|. ||++|++++++ ++.+++
T Consensus 216 dv~~~s~sK~l~------G~~gg~i~~~~~~~~~~l 245 (402)
T cd00378 216 DVVTTTTHKTLR------GPRGGLILTRKGELAKKI 245 (402)
T ss_pred cEEEeccccCCC------CCCceEEEeccHHHHHHH
Confidence 999999999884 78889999886 766554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=167.25 Aligned_cols=170 Identities=14% Similarity=0.199 Sum_probs=132.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee-eEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI-SFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~-~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g 103 (302)
++..+.+.++++.+++++|++.. ++..+ +++++...++.++. +++|+|++++..|+++.. .++..|
T Consensus 40 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g 111 (376)
T TIGR01977 40 LRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL--------KEGDHVITTPMEHNSVARPLECLKEQIG 111 (376)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc--------CCCCEEEECcchhhHHHHHHHHHHHHcC
Confidence 34557889999999999998643 45444 44455434333321 578999999988877643 345669
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
.+++.++.++++.+|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++..+...+ ...
T Consensus 112 ~~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~-~~~~i~~l~~~~~~~livD~a~~~g~~~~-~~~ 186 (376)
T TIGR01977 112 VEITIVKCDNEGLISPERIKRAIK---TNTKLIVVSHASNVTGTIL-PIEEIGELAQENGIFFILDAAQTAGVIPI-DMT 186 (376)
T ss_pred cEEEEEecCCCCCcCHHHHHHhcC---CCCeEEEEECCCCCccccC-CHHHHHHHHHHcCCEEEEEhhhccCccCC-Cch
Confidence 999999998888899999999997 78899999998 5899999 79999999999999999999985554433 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.+++|++++++||+|+.| +|.|+++++++.
T Consensus 187 ~~~~D~~~~s~~K~l~~p-----~g~g~l~~~~~~ 216 (376)
T TIGR01977 187 ELAIDMLAFTGHKGLLGP-----QGTGGLYIREGI 216 (376)
T ss_pred hcCCCEEEecccccccCC-----CCceEEEEcCCc
Confidence 678999999999999854 367878877653
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-18 Score=161.64 Aligned_cols=258 Identities=13% Similarity=0.073 Sum_probs=167.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-e--e-eEe-eCchHHHHHHHHHHHHHHHHhh----cC-CCCCEEEEcCCCCcccHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-K--I-SFQ-PNSGAQGEYAGLRAIQCYHQAQ----DA-HHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-~--~-~~~-~~~Ga~a~~a~l~a~~~~~~~~----g~-~~~d~Vlv~~~~hg~~~~~ 98 (302)
+....++.++.++++++++|++ . . ... +++|++|+..++.+++..+..+ +. ..+.+|++++.+|.+....
T Consensus 75 ~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka 154 (431)
T TIGR01788 75 YPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKF 154 (431)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHH
Confidence 3445589999999999999997 2 2 222 3555666555554444211110 10 0134799999999888888
Q ss_pred HHhCCCEEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHh------CCEEEEecC
Q psy7357 99 AQMAGMSVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEH------GGQVYLDGA 170 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~------g~llivD~a 170 (302)
++..|++++.+|++++ +.+|+++|+++|+ ++|.+|+++..| .+|.++ |+++|+++|+++ |+++++|++
T Consensus 155 ~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~---~~t~lV~~t~g~t~tG~id-pi~~I~~i~~~~~~~~~~~~~~HvDaa 230 (431)
T TIGR01788 155 ARYFDVELREVPMDPGRYVIDPEQVVEAVD---ENTIGVVCILGTTYTGEYE-DVKALNDALDEYNAKTGWDIPIHVDAA 230 (431)
T ss_pred HHHcCceeEEEecCCCceeeCHHHHHHHHh---hCCeEEEEEeCCCCCcccC-CHHHHHHHHHHHHhhhCCCceEEEecc
Confidence 8888999999999876 5899999999998 778888888775 899999 799999999999 999999999
Q ss_pred Cccccc-----cc-CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC--CCCC-------CCCCcccCCCC---c
Q psy7357 171 NMNAQV-----GL-CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH--LAPF-------LPVHPLSSIDS---S 232 (302)
Q Consensus 171 ~~~~~~-----~~-~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~--l~~~-------lpg~~~~~~~~---~ 232 (302)
+..+.. .. .+....++|.++.++||++..| .++|+++++++ +.+. +.+.....+.+ +
T Consensus 231 q~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P-----~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~ 305 (431)
T TIGR01788 231 SGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVY-----PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRP 305 (431)
T ss_pred cHHHHHHHhCCCchhhcCCCCceEEEECchhccCCC-----CCcEEEEEeChHHcchhheecccccCCCCCCcceecCch
Confidence 852221 11 1123457899999999987644 37899999864 3332 22211000000 1
Q ss_pred chhhhHHHHhhHh------h---HHHHH---HHHH-HHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHH
Q psy7357 233 IGAVSAAHYGSAS------I---LPISW---AYIR-RLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAK 297 (302)
Q Consensus 233 l~~~~a~~~~~~~------~---~~~~~---~y~~-~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~ 297 (302)
-.... +.|..+. + .+.+. .|+. +|. ++|+++.+++. ++.+.++.++.. +.+.+..++.+
T Consensus 306 g~~al-~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~----~~iV~Fr~~~~~-~~~~~~~~l~~ 379 (431)
T TIGR01788 306 ANQVI-AQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSG----IPLVAFKLKDDA-DPGYTLYDLSH 379 (431)
T ss_pred HHHHH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCC----ceEEEEEeCCCC-CCCcCHHHHHH
Confidence 01111 2555532 1 11111 3443 565 46888643244 788888776421 12467788888
Q ss_pred Hhhc
Q psy7357 298 RLMD 301 (302)
Q Consensus 298 ~l~~ 301 (302)
+|-+
T Consensus 380 ~L~~ 383 (431)
T TIGR01788 380 RLRE 383 (431)
T ss_pred HHHH
Confidence 8754
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=168.05 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=139.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|....+.++++.+++++|++.+.+ ..+|.+++.+++.++. +++|+|+++.+.|.+....++..|++++.
T Consensus 46 ~~~~~~~~~~~~e~lA~~~g~~~~~i-~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~ 116 (370)
T TIGR02539 46 DQITKPPIHDFLEDLAEFLGMDEARV-THGAREGKFAVMHALC--------KEGDWVVLDGLAHYTSYVAAERAGLNVKE 116 (370)
T ss_pred ccccchHHHHHHHHHHHHhCCCceEE-ECChHHHHHHHHHHhh--------CCCCEEEECCcccHHHHHHHHHcCCEEEE
Confidence 45566678899999999999987665 4556676655555553 67899999888876655667889999999
Q ss_pred eecCC--CCCCCHHHHHHHHhcc----CCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 109 VSVRK--DGTIDFSDLETKVKKN----KETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 109 i~~~~--~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
+|.++ ++.+|+++|++++++. .+++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|..+..+. ..
T Consensus 117 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~-~l~~i~~la~~~~~~livDea~~~g~~~~-~~ 194 (370)
T TIGR02539 117 VPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP-DAGKVAKVCREKGVPLLLNCAYTVGRMPV-SA 194 (370)
T ss_pred EecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc-CHHHHHHHHHHcCCeEEEECccccCCcCC-CH
Confidence 99863 4789999999999632 1367899999995 899999 89999999999999999999986542221 23
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
..+++|+++.++||+++. |.++|++++++++++.+..
T Consensus 195 ~~~~~di~v~s~sK~~~~-----~g~~G~l~~~~~~i~~l~~ 231 (370)
T TIGR02539 195 KEIGADFIVGSGHKSMAA-----SGPCGVLGMSEEWEDIVLR 231 (370)
T ss_pred HHcCCCEEEeeCcccccC-----CCCEEEEEECHHHHhhhcc
Confidence 356789999999999973 2359999999887776643
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-18 Score=160.47 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHhCC-CeeeEeeCchH-HHHHHHHHHHHHHHHh-hcCCCCCEEEEcCCCCcccHHH---HHhCCCEEE
Q psy7357 34 QLIGELETDLCEITGY-DKISFQPNSGA-QGEYAGLRAIQCYHQA-QDAHHRNVCLIPVSAHGTNPAS---AQMAGMSVE 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~-~~~~~~~~~Ga-~a~~a~l~a~~~~~~~-~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v~ 107 (302)
+.+++.++.+.+.+|. +..++..++|+ ++. ..+++.+... .-...+++|++++.+|+++... ++..|++++
T Consensus 42 ~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal---~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~ 118 (382)
T TIGR03403 42 PAIAEALDKLYKGINARDLDDIIITSCATESN---NWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVT 118 (382)
T ss_pred HHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHH---HHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEE
Confidence 4455555566666676 44556555565 444 3333322100 0012357899999999877553 456899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.+|+++++.+|+++++++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ +..++++
T Consensus 119 ~v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~~ivD~a~~~g~~~~-~~~~~~~ 193 (382)
T TIGR03403 119 YLPINEQGTITAEQVREAIT---EKTALVSVMWANNETGMIF-PIKEIGEICKERGVLFHTDAVQAIGKIPV-DVQKAGV 193 (382)
T ss_pred EEecCCCCCCCHHHHHHhcc---cCCeEEEEEcccCCCcccc-CHHHHHHHHHHcCCEEEEechhhcCCCcc-CccccCC
Confidence 99998889999999999998 78899999987 5899999 79999999999999999999976544332 4557889
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
|+++.++||+++ | ||+|++++++++
T Consensus 194 D~~~~s~~K~~g-p-----~G~g~l~vr~~~ 218 (382)
T TIGR03403 194 DFLSFSAHKFHG-P-----KGVGGLYIRKGV 218 (382)
T ss_pred CEEEEcchhhCC-C-----CceEEEEECCCC
Confidence 999999999753 3 578999998654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-19 Score=163.46 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=134.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchHHHHHHHHHHHHHHHHhh------cCCCCCEEEEcCCCCcccHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGAQGEYAGLRAIQCYHQAQ------DAHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga~a~~a~l~a~~~~~~~~------g~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
+.+..++.+++++++++++|.+ ...+++.+|++|+..++.+++...... +...+++|+++++.|.++...+
T Consensus 33 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~ 112 (345)
T cd06450 33 SPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAA 112 (345)
T ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHH
Confidence 7788999999999999999986 234566677777756665554211000 0112458889999998877777
Q ss_pred HhCCCEEEEeecCCCCCCCHHHHHHHHhc---cCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 100 QMAGMSVEPVSVRKDGTIDFSDLETKVKK---NKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 100 ~~~g~~v~~i~~~~~g~iD~~~l~~~i~~---~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
...|.+++.+|+++++.+|+++|++++++ +..++++|++++|+ ++|.+. |+++|+++|+++|+++++|+++....
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~l~vD~a~~~~~ 191 (345)
T cd06450 113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID-PLEEIADLAEKYDLWLHVDAAYGGFL 191 (345)
T ss_pred HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC-CHHHHHHHHHHhCCeEEEechhhHHH
Confidence 77799999999988889999999999973 11277888888874 899998 79999999999999999999975443
Q ss_pred cccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 176 VGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 176 ~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
...... ...++|++++++||+++.| +++|+++++
T Consensus 192 ~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-----~g~g~~~~~ 230 (345)
T cd06450 192 LPFPEPRHLDFGIERVDSISVDPHKYGLVP-----LGCSAVLVR 230 (345)
T ss_pred hhChhhHHHhcCccccCEEEEchhHhhCCC-----cchHHHHHH
Confidence 222111 1136899999999998754 467887766
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-19 Score=166.59 Aligned_cols=177 Identities=15% Similarity=0.219 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCe--e-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCccc-HHHHHhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYDK--I-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTN-PASAQMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~--~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~-~~~~~~~g~~ 105 (302)
.+.+.++++++.+++++|.+. . .+.+++|+.+..+++.++. .++++|++..+ .|+.. ...++..|++
T Consensus 34 ~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~~~~~g~~ 105 (368)
T PRK13479 34 DFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--------PRDGKVLVPDNGAYGARIAQIAEYLGIA 105 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeCCchHHHHHHHHHHcCCc
Confidence 356789999999999999863 3 3356677777656655553 46677776654 44433 2456788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|+++++++++++ ++++.|++++| |++|... |+++|.++||++|+++++|+++..+... .+..++
T Consensus 106 ~~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~~livDa~~~~g~~~-~~~~~~ 182 (368)
T PRK13479 106 HVVLDTGEDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILN-PLDEIAAVAKRHGKRLIVDAMSSFGAIP-IDIAEL 182 (368)
T ss_pred EEEEECCCCCCCCHHHHHHHHHhC-CCCcEEEEEcccCcccccc-CHHHHHHHHHHcCCEEEEEcccccCCcc-cccccc
Confidence 999999877889999999999742 56778889998 4899999 7999999999999999999876444322 234567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++|++++++||+|..| ||+|++++++++++.+..
T Consensus 183 ~~d~~v~s~~K~l~g~-----~G~G~l~~~~~~~~~~~~ 216 (368)
T PRK13479 183 GIDALISSANKCIEGV-----PGFGFVIARRSELEACKG 216 (368)
T ss_pred CceEEEecCccccccC-----CCceEEEECHHHHHHhhc
Confidence 8999999999999743 678999999877666544
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=166.64 Aligned_cols=173 Identities=16% Similarity=0.290 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v~~ 108 (302)
.+.++++++.+++++|.+...+ ..++|+.+...++.++..+. .+++|+|++++..|+++... .+..|++++.
T Consensus 48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~----~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~ 123 (404)
T PRK14012 48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFY----QKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123 (404)
T ss_pred HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEEecCccHHHHHHHHHHHhCCCEEEE
Confidence 3678899999999999976544 44455565544444443211 14689999999998776443 3356999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++.+++|.+|+++|+++++ +++++|+++++ |++|.+. |+++|.++||++|+++++|+++..+...+ +...+++|
T Consensus 124 v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~vivD~a~~~g~~~~-~~~~~~~D 198 (404)
T PRK14012 124 LDPQSNGIIDLEKLEAAMR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERGIIFHVDAAQSVGKVPI-DLSKLKVD 198 (404)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECcCCCccchh-hHHHHHHHHHHcCCEEEEEcchhcCCccc-CcccCCCC
Confidence 9998889999999999998 78899999987 5899999 79999999999999999999985544322 34567899
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++++++||.++ | +|.|+++++++...+
T Consensus 199 ~~~~s~~K~~g-p-----~g~G~l~~~~~~~~~ 225 (404)
T PRK14012 199 LMSFSAHKIYG-P-----KGIGALYVRRKPRVR 225 (404)
T ss_pred EEEEehhhccC-C-----CceEEEEEecCCCCC
Confidence 99999999553 2 368999988764433
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=157.28 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=131.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeee-EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKIS-FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~-~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
..+..+..+++++++++++|++..+ +...+|+.+++.++.+++.. ..+++++|++++..|.++...++..|++++
T Consensus 54 ~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~----~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~ 129 (371)
T PRK13520 54 FPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNL----AKAEKPNIVVPESAHFSFDKAADMLGVELR 129 (371)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhh----ccCCCceEEecCcchHHHHHHHHHcCceEE
Confidence 3578888899999999999987643 44555666654554444321 012568999999998877777788899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-C-----C
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-C-----R 180 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~-----~ 180 (302)
.+|.++++.+|+++|+++++ +++++|++.++ |++|.+. |+++|+++|+++|+++++|++|....... . .
T Consensus 130 ~v~~~~~~~~d~~~l~~~i~---~~~~~vi~~~~~~~tG~~~-~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~ 205 (371)
T PRK13520 130 RAPLDDDYRVDVKAVEDLID---DNTIGIVGIAGTTELGQVD-PIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFD 205 (371)
T ss_pred EecCCCCCcCCHHHHHHHHh---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCcc
Confidence 99998888999999999998 67777776666 5899999 79999999999999999999875322111 1 1
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
....++|.+++++||+... |.++|++++ ++++.+.+
T Consensus 206 ~~~~~vd~~~~s~~K~~~a-----~~~~G~~~~~~~~~~~~l 242 (371)
T PRK13520 206 FSLPGVDSITIDPHKMGLA-----PIPAGGILFRDESYLDAL 242 (371)
T ss_pred ccCCCCceEEECCccccCc-----cCCceEEEEcCHHHHHhh
Confidence 1235789999999997643 234555555 44454443
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=163.89 Aligned_cols=164 Identities=23% Similarity=0.223 Sum_probs=123.4
Q ss_pred HHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-----HHHhCCCEEEEeecCC
Q psy7357 39 LETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-----SAQMAGMSVEPVSVRK 113 (302)
Q Consensus 39 ~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-----~~~~~g~~v~~i~~~~ 113 (302)
.++.+++++|++...+.+++|+.|+.+++.++. ++||+|+++++.|+++.. .....|++++.+++++
T Consensus 76 ~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 147 (416)
T PRK00011 76 AIDRAKELFGAEYANVQPHSGSQANAAVYFALL--------KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE 147 (416)
T ss_pred HHHHHHHHhCCCceeeecCCchHHHHHHHHHhc--------CCCCEEEEeccccCCccccccccccccceeeEeecCcCc
Confidence 456899999998877777788877655554442 689999999999986532 1234567898998874
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccc---cCCCCccCCcEE
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG---LCRPGDYGSDVS 189 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~~p~~~gaDiv 189 (302)
++.+|++++++++++ .++++|++++++ +|... |+++|+++|+++|+++++|++|..+... ...+.. ++|++
T Consensus 148 ~~~~~d~~~l~~~i~~--~~~k~v~~~~~~-~~~~~-~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~ 222 (416)
T PRK00011 148 ETGLIDYDEVEKLALE--HKPKLIIAGASA-YSRPI-DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVV 222 (416)
T ss_pred ccCCcCHHHHHHHHHh--cCCCEEEECCCc-CCCcc-CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEE
Confidence 588999999999973 367788887644 46666 7999999999999999999998544321 122333 68999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++++||+|+ ||++|+++++ +++.+++
T Consensus 223 ~~S~~K~l~------g~~gg~i~~~~~~~~~~l 249 (416)
T PRK00011 223 TTTTHKTLR------GPRGGLILTNDEELAKKI 249 (416)
T ss_pred EecCCcCCC------CCCceEEEeCCHHHHHHH
Confidence 999999874 6888999996 4666554
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-18 Score=140.72 Aligned_cols=161 Identities=28% Similarity=0.388 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHh--CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-HHHHhCCCEEEEeecC
Q psy7357 36 IGELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-ASAQMAGMSVEPVSVR 112 (302)
Q Consensus 36 ~~e~~~~l~~l~--g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-~~~~~~g~~v~~i~~~ 112 (302)
+.++++++++++ +.+...+.+ +|+.|+..+++++. +++++|+++++.|+++. ..+...|++++.++.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~-~~t~a~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVP-SGTGANEAALLALL--------GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeC-CcHHHHHHHHHHhC--------CCCCEEEEeecccceehhhHHHhcCCEEEEeccC
Confidence 468999999999 655555544 66666656666553 46789999999988777 6778889999999987
Q ss_pred CCCCCCH--HHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCccccccc--CCCCccCCc
Q psy7357 113 KDGTIDF--SDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL--CRPGDYGSD 187 (302)
Q Consensus 113 ~~g~iD~--~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~--~~p~~~gaD 187 (302)
.++..+. +++++... .++++++++++|+ ++|... |+++|+++|+++|+++++|+++....... ..+...++|
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~-~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d 149 (170)
T cd01494 73 DAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLV-PLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGAD 149 (170)
T ss_pred CCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEc-CHHHHHHHHHHcCCEEEEecccccccccccccccccccCC
Confidence 6554433 35554433 2688999999885 778877 79999999999999999999875333221 124456799
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+++.++||+|+ +|++|++.+|
T Consensus 150 ~~~~s~~K~~~------~~~~G~l~~~ 170 (170)
T cd01494 150 VVTFSLHKNLG------GEGGGVVIVK 170 (170)
T ss_pred EEEEEcccccC------CCceEEEEeC
Confidence 99999999986 5899999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-17 Score=154.01 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=128.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeee-EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKIS-FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~-~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
+.|..+..+++++.+++++|++..+ +...+|+.++..++.+++... .. ..++++|+++++.|.++...++..|++++
T Consensus 54 ~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~g~~vl~~~~~h~~~~~~~~~~G~~~~ 131 (373)
T TIGR03812 54 FPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLA-RE-EKRTPNIIVPESAHFSFEKAAEMLGLELR 131 (373)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHH-hc-cCCCcEEEECCcchHHHHHHHHHcCCeEE
Confidence 3567788899999999999997654 344445554434433333211 01 13568999999998877777888999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc--------
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-------- 178 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-------- 178 (302)
.+|.++++.+|+++++++++ +++.++++..| |++|.+. |+++|.++||++|+++++|+++......+
T Consensus 132 ~v~~~~~~~~d~~~l~~~l~---~~~~~vv~~~~~~~tG~~~-~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~ 207 (373)
T TIGR03812 132 YAPLDEDYTVDVKDVEDLID---DNTIGIVGIAGTTELGQID-DIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPP 207 (373)
T ss_pred EEeeCCCCCcCHHHHHHHHh---hCcEEEEEECCCCCCCccC-CHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCC
Confidence 99998888999999999998 55544444434 6899998 79999999999999999999985322111
Q ss_pred -CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 -CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 -~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
......++|.+++++||++..| .|..|+++.++++.+.+
T Consensus 208 ~~d~~~~~~d~~~~s~~K~~~~~----~~~G~~~~~~~~~~~~l 247 (373)
T TIGR03812 208 PFDFSLPGVQSITIDPHKMGLSP----IPAGGILFRSKSYLKYL 247 (373)
T ss_pred CccccCCCCCEEEECccccCCCc----CCceEEEEeCHHHHhhh
Confidence 0111247899999999965433 12234555566666554
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-18 Score=150.57 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=143.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccH-HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNP-ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~-~~~~~~g~ 104 (302)
|.-+.|+++++.+-++..|.... ..+..++|..|.++++..+. .+||+|++-.. .+|... ..++++|+
T Consensus 45 sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l--------ePgd~vLv~~~G~wg~ra~D~~~r~ga 116 (385)
T KOG2862|consen 45 SPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL--------EPGDNVLVVSTGTWGQRAADCARRYGA 116 (385)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc--------CCCCeEEEEEechHHHHHHHHHHhhCc
Confidence 34577899999999999998765 35667888888777776655 68888777654 444333 36779999
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCC
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPG 182 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~ 182 (302)
+|..++.+..+...++++++.+.+|++ ++|++++. +.||++++.++.+.++||+|+++++||++. ++++. ...+
T Consensus 117 ~V~~v~~~~G~~~~le~i~~~lsqh~p--~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~Va--Slggt~F~mD 192 (385)
T KOG2862|consen 117 EVDVVEADIGQAVPLEEITEKLSQHKP--KAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVA--SLGGTEFEMD 192 (385)
T ss_pred eeeEEecCcccCccHHHHHHHHHhcCC--ceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechh--hcCCccceeh
Confidence 999999988888999999999998655 56888775 589999933888899999999999999874 45443 3568
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
+||+|++...++|.|+.| ||+++++.+++..+++..|-.
T Consensus 193 ewgVDvaytgSQKaL~aP-----~GLsiisfS~ka~~~~~~rK~ 231 (385)
T KOG2862|consen 193 EWGVDVAYTGSQKALGAP-----AGLSIISFSDKALEAIRDRKT 231 (385)
T ss_pred hhcccEEEecchhhcCCC-----CCcceeecCHHHHHHHhhccC
Confidence 999999999999999876 689999999887777765554
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=159.19 Aligned_cols=176 Identities=13% Similarity=0.187 Sum_probs=133.0
Q ss_pred cHHHHHHHHHHHHHHHhCCCee--eE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCE-EEEcCCCCcc-cHHHHHhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYDKI--SF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNV-CLIPVSAHGT-NPASAQMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~--~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~-Vlv~~~~hg~-~~~~~~~~g~~ 105 (302)
.+.+.++++++++++++|++.. .+ ...+|+.+..+++.++. +++++ |++.++.|+. ....++..|.+
T Consensus 28 ~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--------~~~~~vi~~~~~~~~~~~~~~a~~~g~~ 99 (355)
T TIGR03301 28 EFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--------PRDGKLLVLINGAYGERLAKICEYLGIP 99 (355)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------CCCCeEEEECCCchhhHHHHHHHHcCCc
Confidence 4568899999999999999752 23 45677776655555443 34555 5555566665 23466788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.++.++++.+|++++++.++++ ++++.|+++++ |++|.+. |+++|+++|+++|+++++|+++..+... .+...+
T Consensus 100 ~~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~livD~~~s~g~~~-~~~~~~ 176 (355)
T TIGR03301 100 HTDLNFSEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILN-PLEAIAKVARSHGAVLIVDAMSSFGAIP-IDIEEL 176 (355)
T ss_pred eEEEecCCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchh-HHHHHHHHHHHcCCEEEEEeccccCCcc-cchhhc
Confidence 999998777889999999999753 56677777776 5789999 7999999999999999999876433222 234567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++.++||+|+. +||+|++++++++++.+.
T Consensus 177 ~~d~~~~s~~K~l~~-----~~G~g~~~~~~~~~~~~~ 209 (355)
T TIGR03301 177 DVDALIASANKCLEG-----VPGFGFVIARRDLLEASA 209 (355)
T ss_pred CccEEEecCCccccc-----CCceeEEEECHHHHHHhh
Confidence 899999999999863 468999999987766554
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=155.68 Aligned_cols=167 Identities=16% Similarity=0.146 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
...++++.+++++|.+.+ +.+.+|+.|...++.++. .++||+|+++++.|..+...+...|++++.++++++
T Consensus 34 ~~~~le~~la~~~g~~~~-v~~~sgt~al~lal~al~-------~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~ 105 (379)
T PRK11658 34 KNQALEQAFCQLTGNQHA-IAVSSATAGMHITLMALG-------IGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRD 105 (379)
T ss_pred hHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHcC-------CCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCC
Confidence 478999999999999864 456677776645544431 157999999999988887777889999999999865
Q ss_pred -CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEeC
Q psy7357 115 -GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHLN 192 (302)
Q Consensus 115 -g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~~ 192 (302)
+.+|+++++++++ ++|++|+..+| +|... |+++|+++|+++|+++++|+++..+.... ...+.+|.|+..++
T Consensus 106 ~~~~d~~~l~~~i~---~~tkav~~~~~--~G~~~-d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~ 179 (379)
T PRK11658 106 TLMVTPEAIEAAIT---PRTKAIIPVHY--AGAPA-DLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFH 179 (379)
T ss_pred cCCcCHHHHHHhcc---cCCeEEEEeCC--CCCcC-CHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCC
Confidence 4689999999998 78999887664 68888 89999999999999999999986443221 23567787777777
Q ss_pred CCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
.+|.+. ++.+|+++++ +++.+++
T Consensus 180 ~~K~l~------~g~GG~v~~~~~~~~~~~ 203 (379)
T PRK11658 180 AIKNIT------CAEGGLVVTDDDELADRL 203 (379)
T ss_pred CCCcCc------ccCceEEEECCHHHHHHH
Confidence 778765 3467888775 4554433
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=161.96 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
-..++++.+++++|.+. .+..++|+.|..+++.++. ++||+|+++++.|+.+.. .++..|++++.++
T Consensus 65 ~~~~Le~~iA~~~g~~~-~l~~~sG~~Ai~~al~~ll--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 135 (400)
T PRK06234 65 TSTEVENKLALLEGGEA-AVVAASGMGAISSSLWSAL--------KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVD 135 (400)
T ss_pred cHHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEEC
Confidence 35689999999999875 4567778876655555443 689999999998876543 3467899999988
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCCCccCCc
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
.+ |+++++++++ ++|++|++++| |++|.+. |+++|.++|+++ |+++++|+++.... ...|..+++|
T Consensus 136 ~~-----d~e~l~~~i~---~~tklI~iesP~NPtG~v~-dl~~I~~la~~~~~~i~livDea~~~~~--~~~~l~~g~D 204 (400)
T PRK06234 136 TS-----NLEEVRNALK---ANTKVVYLETPANPTLKVT-DIKAISNIAHENNKECLVFVDNTFCTPY--IQRPLQLGAD 204 (400)
T ss_pred CC-----CHHHHHHHhc---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHhcCCCCEEEEECCCCchh--cCCchhhCCc
Confidence 63 8999999998 78999999999 5899998 899999999997 99999999864332 2355667899
Q ss_pred EEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+++.|.+|+++++ |. .+|++++++++++++
T Consensus 205 ivv~S~sK~l~g~----g~~~gG~v~~~~~~~~~l 235 (400)
T PRK06234 205 VVVHSATKYLNGH----GDVIAGFVVGKEEFINQV 235 (400)
T ss_pred EEEeeccccccCC----CCceeEEEEecHHHHHHH
Confidence 9999999999743 33 369999998776665
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=160.53 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~ 110 (302)
...++++++++++|.+.+.+ ..+|+.++.+++.++. ++||+|+++++.|+.+... +...|++++.++
T Consensus 66 ~~~~Le~~lA~l~G~~~~~~-~~sG~~Ai~~~l~~~l--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 136 (398)
T PRK07504 66 TVDMFEKRMCALEGAEDARA-TASGMAAVTAAILCQV--------KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD 136 (398)
T ss_pred hHHHHHHHHHHHhCCCeeeE-ecCHHHHHHHHHHHHh--------CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC
Confidence 46889999999999988765 5678776644444332 6899999999988866432 346788888886
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
.+|+++++++++ ++|++|++++| |++|.+. |+++|.++|+++|+++++|+++.... ...|.++|+|++
T Consensus 137 -----~~d~e~l~~ai~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~gi~lvvD~a~a~~~--~~~~~~~gaDiv 205 (398)
T PRK07504 137 -----GLDLDNWEKAVR---PNTKVFFLESPTNPTLEVI-DIAAVAKIANQAGAKLVVDNVFATPL--FQKPLELGAHIV 205 (398)
T ss_pred -----CCCHHHHHHhcC---cCceEEEEECCCCCCcEec-CHHHHHHHHHHcCCEEEEECCccccc--cCCchhhCCCEE
Confidence 279999999998 88999999999 5899998 89999999999999999999874333 245677899999
Q ss_pred EeCCCcccCCCCCCCCCcc-eeEEEeCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGM-GPIGVKSHLA 218 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~-G~l~~~~~l~ 218 (302)
+.|+||+|+.+ |+++ |+++++++++
T Consensus 206 v~S~sK~l~g~----g~~~GG~vv~~~~~i 231 (398)
T PRK07504 206 VYSATKHIDGQ----GRCLGGVVLSDKAWI 231 (398)
T ss_pred EeeccccccCC----ccceEEEEEeCcHHH
Confidence 99999999854 5555 5777776554
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-17 Score=150.98 Aligned_cols=244 Identities=15% Similarity=0.129 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++++|.+.+ +...+|+.|...++.++. ..++|+|+++.+.|.++...+...|++++.+++++
T Consensus 18 ~~~~~~~~~la~~~~~~~~-~~~~sgt~al~~~l~~l~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 89 (352)
T cd00616 18 PKVREFEKAFAEYLGVKYA-VAVSSGTAALHLALRALG-------IGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP 89 (352)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHcC-------CCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCC
Confidence 4678999999999998754 445678776655555442 15789999999998877777788999999999987
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-CCCccCCcEEEe
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC-RPGDYGSDVSHL 191 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-~p~~~gaDiv~~ 191 (302)
++.+|++++++.++ +++++|++++ ++|... |+++|.++|+++|+++++|++|..+..... ..+.+ .|+.++
T Consensus 90 ~~~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~-~d~~~~ 162 (352)
T cd00616 90 DTYNIDPELIEAAIT---PRTKAIIPVH--LYGNPA-DMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTF-GDAGAF 162 (352)
T ss_pred CcCCcCHHHHHHhcC---cCCeEEEEEC--CCCCcC-CHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccC-cceeEE
Confidence 68899999999997 7899999886 468888 799999999999999999999865432211 12333 488888
Q ss_pred CCC--cccCCCCCCCCCcceeEEEeC-CCCCCCC-----CCccc-------C--CCCcchhhhHHHHhhHh--h----HH
Q psy7357 192 NLH--KTFCIPHGGGGPGMGPIGVKS-HLAPFLP-----VHPLS-------S--IDSSIGAVSAAHYGSAS--I----LP 248 (302)
Q Consensus 192 ~~h--K~l~~p~~~gGp~~G~l~~~~-~l~~~lp-----g~~~~-------~--~~~~l~~~~a~~~~~~~--~----~~ 248 (302)
++| |+|+ ++.+|++++++ ++.+++. +.... . .+..+..+.+++..... + ..
T Consensus 163 S~~~~K~~~------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~ 236 (352)
T cd00616 163 SFHPTKNLT------TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIAR 236 (352)
T ss_pred cCCCCCCCc------ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHH
Confidence 755 8773 34567787763 5544332 11100 0 12223333332222211 0 11
Q ss_pred --HHHHHHH-HHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 249 --ISWAYIR-RLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 249 --~~~~y~~-~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
....|+. .|. +|+++....+......+-+.+.+++. .|.+..++.+.|.+
T Consensus 237 ~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~L~~ 291 (352)
T cd00616 237 RREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE---AGESRDELIEALKE 291 (352)
T ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc---CCCCHHHHHHHHHH
Confidence 1113333 565 47877543321013467777777631 24788899988864
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=157.99 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC--
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~-- 113 (302)
+.++++.+++++|.+.+ +.+.+|+.|+..+++++. ++|| |+++++.|.++.......|.+++.+|+++
T Consensus 80 ~~~Lreaia~~~~~~~v-v~t~ggt~A~~~~~~all--------~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~ 149 (460)
T PRK13238 80 YYRLEDAVKDIFGYPYT-IPTHQGRAAEQILFPVLI--------KKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEAL 149 (460)
T ss_pred HHHHHHHHHHHhCCCcE-EECCCHHHHHHHHHHHhC--------CCCC-EEccCCcccchHHHHHHcCCEEEEEeccccc
Confidence 46677788999998765 455667777755555543 6899 89999977778777889999999999853
Q ss_pred --------CCCCCHHHHHHHHhccC-CCeEEEEEecC-CCce-ec--cccHHHHHHHHHHhCCEEEEecCCccc--cc--
Q psy7357 114 --------DGTIDFSDLETKVKKNK-ETLSCLMITYP-STFG-VF--EENITDVCELIHEHGGQVYLDGANMNA--QV-- 176 (302)
Q Consensus 114 --------~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G-~~--~~di~~I~~ia~~~g~llivD~a~~~~--~~-- 176 (302)
.|.+|+++|++.+++++ ++|++|++++| |++| .. ..++++|+++|+++|+++|.|+++... ..
T Consensus 150 ~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~ 229 (460)
T PRK13238 150 DTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIK 229 (460)
T ss_pred cccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhh
Confidence 25599999999998543 47999999998 5776 43 126899999999999999999987431 11
Q ss_pred ----cc--CCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCCCCccc-CCC---Ccch-hhhH
Q psy7357 177 ----GL--CRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLPVHPLS-SID---SSIG-AVSA 238 (302)
Q Consensus 177 ----~~--~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lpg~~~~-~~~---~~l~-~~~a 238 (302)
+. .+..+ -..|+++++++|.+. ||.+|+++++ +++.+++....+. ++. .++. +..+
T Consensus 230 ~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~------~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~ 303 (460)
T PRK13238 230 QREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM------VNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDME 303 (460)
T ss_pred hccccccCCCHHHHhhhhcccCcEEEEecccCCC------CcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHH
Confidence 01 11111 136999999999776 4556899988 4777776544321 111 1110 1011
Q ss_pred HHHhhHh-hHHHH--------HHHHH-HHh-cccccccccCCCcceeEEEEEEeccccc---cCCCCHHHHHHHhhc
Q psy7357 239 AHYGSAS-ILPIS--------WAYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKK---SANIEAVDIAKRLMD 301 (302)
Q Consensus 239 ~~~~~~~-~~~~~--------~~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~---~~g~~~~~~~~~l~~ 301 (302)
+...++. ..... ..|+. .|. .|++++.+ .. .|-+.+|++.+.- ..+.+..+++..|+.
T Consensus 304 Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~p-~G----g~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~ 375 (460)
T PRK13238 304 ALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEAGVPIQTP-AG----GHAVFVDAGKFLPHIPAEQFPAQALACELYL 375 (460)
T ss_pred HHHhhHHHhhChHHHHHHHHHHHHHHHHHHHCCCCeEcc-CC----ceEEEEEchhcCCCCCCCCCchHHHHHHHHH
Confidence 1111111 11111 12333 565 58988643 33 5889999986521 113456778877763
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=157.06 Aligned_cols=246 Identities=20% Similarity=0.256 Sum_probs=157.3
Q ss_pred ccccHHHHHHHHHH----HHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHH--
Q psy7357 28 QARGYEQLIGELET----DLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQ-- 100 (302)
Q Consensus 28 ~sqG~l~~~~e~~~----~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~-- 100 (302)
..-| .+...++++ .+++++|.+.+.+.++||+.|+.+++.++. +++|+|++++..|+++.. -++
T Consensus 65 ~~~G-~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~--------~~GD~Vl~~~~~~~~~~~~g~~~~ 135 (416)
T PRK13034 65 YYGG-CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALL--------KPGDTILGMSLSHGGHLTHGAKVS 135 (416)
T ss_pred ccCC-ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhc--------CCCCEEEEcCccceeeeecCCcce
Confidence 3345 477888888 999999999887778899988877777764 789999999998876421 111
Q ss_pred hCCC--EEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 101 MAGM--SVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 101 ~~g~--~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
..+. +...++.+. ++.+|++++++.++. .++++|+++++. +|... |+++|.++|+++|+++++|++|..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~klVi~~~~~-~g~~~-dl~~l~~la~~~g~~livD~Aha~G~~~ 211 (416)
T PRK13034 136 LSGKWYNAVQYGVDRLTGLIDYDEVEELAKE--HKPKLIIAGFSA-YPREL-DFARFREIADEVGALLMVDMAHIAGLVA 211 (416)
T ss_pred eccceeeeEEcccccccCCcCHHHHHHHHhh--cCCeEEEECCCc-ccccc-CHHHHHHHHHHcCCEEEEeCcccccCcc
Confidence 1122 223455443 467999999999864 356788776644 57777 8999999999999999999998654432
Q ss_pred c-CCCCc-cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCccc--CCCCcchhhhHHHHhhHh-hHHHH-
Q psy7357 178 L-CRPGD-YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPLS--SIDSSIGAVSAAHYGSAS-ILPIS- 250 (302)
Q Consensus 178 ~-~~p~~-~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~~--~~~~~l~~~~a~~~~~~~-~~~~~- 250 (302)
. ..++. .++|++++++||+|+ ||.+|++++++ ++.+++...++. +++.....++| ...++. +....
T Consensus 212 ~g~~~~~~~~~Di~~~s~~K~l~------g~~GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa-~~~al~~~~~~~~ 284 (416)
T PRK13034 212 AGEHPNPFPHAHVVTTTTHKTLR------GPRGGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAA-KAVAFGEALQPEF 284 (416)
T ss_pred cCCCCCCCCCceEEEEeCcccCC------CCCCeEEEECcHHHHHHHHhhcCCcccCCccHHHHHH-HHHHHHHHhChhH
Confidence 2 11111 258999999999996 45568887765 333333222221 11111112222 222221 11110
Q ss_pred -------H---HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 251 -------W---AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 251 -------~---~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
+ .|++ +|. .|+++..+++. .|.+.|++.. .+.+..++.++|.+
T Consensus 285 ~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~----t~i~~v~~~~----~~~~~~~~~~~L~~ 339 (416)
T PRK13034 285 KTYAKQVIANAQALAEVLKERGYDLVSGGTD----NHLLLVDLRP----KGLSGKDAEQALER 339 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccCCCC----CcEEEEEcCC----CCCCHHHHHHHHHh
Confidence 1 2333 555 58887632233 8999998863 24677777777754
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=158.11 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~v~~ 108 (302)
.....++++.+++++|.+.+. ...+|+.|+.+++.++. ++||+|+++++.|+.+. ..+...|++++.
T Consensus 62 ~p~~~~le~~lA~l~g~~~av-~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAEDAR-GFASGMAAISSTVLSFV--------EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDY 132 (389)
T ss_pred ChhHHHHHHHHHHHhCCCcEE-EECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEE
Confidence 355889999999999998764 45778776645554433 68999999998887643 245578999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++.+ |++++++++. +|++|++++|+ +++.+. |+++|+++||++|+++++|+++.... ...|..+|+|
T Consensus 133 vd~~-----d~~~l~~~i~----~tklV~ie~pt~~~~~~~-dl~~i~~la~~~gi~vivD~a~a~~~--~~~p~~~g~D 200 (389)
T PRK05968 133 VDGR-----DEEAVAKALP----GAKLLYLESPTSWVFELQ-DVAALAALAKRHGVVTMIDNSWASPV--FQRPITLGVD 200 (389)
T ss_pred eCCC-----CHHHHHHhcc----cCCEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcchh--ccCchhcCCc
Confidence 8753 8999998873 57889999984 677777 89999999999999999999864322 2346678999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.|++|+|+.| |++++|+++.++++++++.
T Consensus 201 ivv~S~tK~l~g~---~~~~gG~i~~~~~~~~~l~ 232 (389)
T PRK05968 201 LVIHSASKYLGGH---SDTVAGVVAGSKEHIARIN 232 (389)
T ss_pred EEEeeccccccCC---CCeEEEEEEECHHHHHHHH
Confidence 9999999999854 3456799998877665543
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-18 Score=159.98 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +...+|+.|+..++.++. +++|+|+++++.|+.+.. .+...|++++.+
T Consensus 59 p~~~~le~~lA~l~g~~~a-v~~~sG~~Ai~~~l~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~v 129 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEAA-VATSSGMGAIAATLLTIL--------KAGDHLISDECLYGCTFALLEHALTKFGIQVDFI 129 (391)
T ss_pred chHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEE
Confidence 3578899999999999874 566778776655554443 689999999998875433 345679999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|...++|+
T Consensus 130 d~~-----d~e~l~~~i~---~~tklV~le~p~Np~G~v~-dl~~I~~la~~~gi~livD~a~a~~~--~~~~~~~g~Di 198 (391)
T TIGR01328 130 NMA-----IPEEVKAHIK---DNTKIVYFETPANPTMKLI-DMERVCRDAHSQGVKVIVDNTFATPM--LTNPVALGVDV 198 (391)
T ss_pred CCC-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCchhc--cCCchhcCCCE
Confidence 864 8999999998 78999999999 5899998 89999999999999999999874332 23566789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++.+.+|+|+.+ |++.+|+++.++++++++.
T Consensus 199 vv~S~sK~lgg~---g~~~gG~v~~~~~li~~l~ 229 (391)
T TIGR01328 199 VVHSATKYIGGH---GDVVAGLICGKAELLQQIR 229 (391)
T ss_pred EEccccccccCC---CCceEEEEEcCHHHHHHHH
Confidence 999999998743 2344789888887766553
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=153.02 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=141.3
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHh-hcC-----CCCCEEEEcCCCCcccHHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQA-QDA-----HHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~-----~~~d~Vlv~~~~hg~~~~~ 98 (302)
+.+.++.++-.++-.+++++++.+. .-.++.+|+++++-+++++|..+.. .+. ....+|++|...|.+....
T Consensus 94 ~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Ka 173 (460)
T COG0076 94 DESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKA 173 (460)
T ss_pred ccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHH
Confidence 4677888899999999999999953 3556677788887777777765531 110 1123799999999999999
Q ss_pred HHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEE--EEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 99 AQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSC--LMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~--V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
+...|++.+.+|.++ +..+|+++++++|+ +++.. |+.+-++ ++|.++ |+++|+++|+++++++|||+|....
T Consensus 174 a~~lG~~~~~v~~~~~~~~id~~~l~~~i~---~~t~~g~vV~~aGtT~~G~iD-di~~ia~ia~~~~i~lHVDAA~GG~ 249 (460)
T COG0076 174 ARYLGLGLRRVPTVPTDYRIDVDALEEAID---ENTIGGVVVGTAGTTDTGSID-DIEELADIAEEYGIWLHVDAAFGGF 249 (460)
T ss_pred HHHhCCCceeEEeccCccccCHHHHHHHHH---hhccCceEEEEecCCCCCccC-CHHHHHHHHHHcCCcEEEEccccce
Confidence 999999999999988 78999999999999 45554 6666565 799999 8999999999999999999985333
Q ss_pred ccccCCC------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 175 QVGLCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 175 ~~~~~~p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
+..+..+ +..++|.++.+.||++..| +++|+++++++
T Consensus 250 ~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP-----~~~G~il~rd~ 292 (460)
T COG0076 250 LLPFLEPDGRWDFGLEGVDSITVDGHKYGLAP-----IGCGVVLFRDE 292 (460)
T ss_pred eecccCccchhhcCCCCceEEEECcccccCCC-----CCceEEEEECH
Confidence 3323222 2236899999999999987 57889999864
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-18 Score=160.41 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|+.|...++.++. ++||+|+++.+.|+.... .+...|++++.+
T Consensus 65 p~~~~le~~lA~l~g~~~~-i~~~sG~~Al~~~l~~ll--------~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~v 135 (403)
T PRK07503 65 PTLALLEQRMASLEGGEAA-VALASGMGAITATLWTLL--------RPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHV 135 (403)
T ss_pred chHHHHHHHHHHHhCCCcE-EEEcCHHHHHHHHHHHHc--------CCCCEEEEccCccchHHHHHHHHHhhCCEEEEEe
Confidence 3578899999999999765 556788876544444432 689999999998875432 345689999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...|..+++|+
T Consensus 136 d~~-----d~~~l~~~i~---~~tklV~le~p~NPtG~~~-di~~I~~la~~~gi~lIvD~a~a~~~--~~~~l~~g~Di 204 (403)
T PRK07503 136 DLT-----DPAALKAAIS---DKTRMVYFETPANPNMRLV-DIAAVAEIAHGAGAKVVVDNTYCTPY--LQRPLELGADL 204 (403)
T ss_pred CCC-----CHHHHHHhcC---ccCcEEEEeCCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCE
Confidence 863 7999999998 78999999998 5899998 89999999999999999999874332 23455678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++.|++|+|+.+ |+.++|+++.++++++++.
T Consensus 205 ~v~S~tK~l~g~---gd~~gG~v~~~~~l~~~l~ 235 (403)
T PRK07503 205 VVHSATKYLGGH---GDITAGLVVGGKALADRIR 235 (403)
T ss_pred EEccccccccCC---CceeEEEEEcCHHHHHHHH
Confidence 999999999843 3356899988777766654
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-17 Score=153.67 Aligned_cols=178 Identities=15% Similarity=0.189 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHHHHHHHhCC--Ce-eeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGY--DK-ISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~--~~-~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+|..++++.+.+.+.+..|. +. .++..++|++ +...++.++. ++||.|++++|.|+.+...++..|++
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~--------~~Gd~Vlv~~P~y~~~~~~~~~~G~~ 140 (399)
T PRK07681 69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA--------NPGDIILVPDPGYTAYETGIQMAGAT 140 (399)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC--------CCCCEEEECCCCccchHHHHHhcCCE
Confidence 68888888888888877674 44 5677788874 3322222222 68999999999999888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc-ccc-
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ-VGL- 178 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~-~~~- 178 (302)
++.+|++++ ..+|++++++.+. +++++|++++| ||+|.+. +.+++|.++|+++|+++|.|.++.--. ...
T Consensus 141 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~ 217 (399)
T PRK07681 141 SYYMPLKKENDFLPDLELIPEEIA---DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNK 217 (399)
T ss_pred EEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCC
Confidence 999999754 3679999999887 68899999998 6999874 148889999999999999999874111 110
Q ss_pred -CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 -CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 -~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ +....-.|++.+.+|+|+.| |.|+||+++++++++.+.
T Consensus 218 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~i~~~~l~~~~~ 262 (399)
T PRK07681 218 PISFLSVPGAKEVGVEINSLSKSYSLA----GSRIGYMIGNEEIVRALT 262 (399)
T ss_pred CCChhhCCCCcccEEEEeecccccCCc----cceeEEEecCHHHHHHHH
Confidence 01 11112246677778877655 899999999887776553
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=155.06 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
...+++++.+++++|.+.. +...+|+.|..++ +.+ + ++||+|+++++.|+.+.. .+...|++++.+
T Consensus 47 p~~~~le~~la~l~g~~~~-l~~~sG~~al~~~-l~l---l-----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v 116 (378)
T TIGR01329 47 PTRTALESLLAKLDKADRA-FAFSSGMAALDVI-TRL---L-----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHV 116 (378)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHH-HHH---h-----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEe
Confidence 4578999999999999654 4456676654222 222 1 689999999998876543 345689999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|.++|+|+
T Consensus 117 d~-----~d~~~le~~i~---~~tklv~le~psnptg~v~-dl~~I~~la~~~g~~vivD~a~~~~~--~~~~l~~g~Di 185 (378)
T TIGR01329 117 DT-----TDLDKVKAALG---PKTKLVLLESPTNPLQKIV-DIRKISEMAHAQNALVVVDNTMMSPL--LCNPLELGADI 185 (378)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCcccc--cCChhhcCCcE
Confidence 86 38999999998 88999999999 5899998 89999999999999999999864332 34566789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
++.++||+++.| ++...|++++++ ++.+++
T Consensus 186 ~v~S~tK~l~G~---~~~~~G~v~~~~~~~~~~~ 216 (378)
T TIGR01329 186 VYHSATKFLAGH---SDVMAGVLAVKGEEIAKKV 216 (378)
T ss_pred EEEecceeccCC---ccceeEEEEeCcHHHHHHH
Confidence 999999999843 123489998865 443444
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=158.02 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=135.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++++.+++.+|.+ ..++..++|+ ++...++.++. +++|+|++++|.|..+...++..|+
T Consensus 64 ~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 135 (389)
T PRK05957 64 VQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT--------DPGDEIILNTPYYFNHEMAITMAGC 135 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc--------CCCCEEEEeCCCCcCHHHHHHhcCC
Confidence 6899999999999999999974 3456667776 33323333322 6789999999998888777788999
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc--c
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG--L 178 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~--~ 178 (302)
+++.+|.+.++.+|++++++.++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|.++.- .... .
T Consensus 136 ~~~~v~~~~~~~~d~~~l~~~i~---~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~ 212 (389)
T PRK05957 136 QPILVPTDDNYQLQPEAIEQAIT---PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKH 212 (389)
T ss_pred EEEEeecCCCCCcCHHHHHHhcC---cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCc
Confidence 99999998777899999999997 78999999998 58998752 499999999999999999998631 1110 0
Q ss_pred CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 179 CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 179 ~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+ +....--|++.+..|.++.| |.|+|++++++++++++..
T Consensus 213 ~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~~~ 257 (389)
T PRK05957 213 FSPGSIPGSGNHTISLYSLSKAYGFA----SWRIGYMVIPIHLLEAIKK 257 (389)
T ss_pred cChhhCCCccCcEEEEecchhhccCc----cceeEEEecCHHHHHHHHH
Confidence 01 11222236666677777544 8899999998887776653
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=158.22 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +.+.||+.|+.+++.++. ++||+||+++..|+..... +...|++++++
T Consensus 64 p~~~~le~~lA~l~g~~~a-v~~sSGt~Al~~al~~ll--------~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~v 134 (433)
T PRK08134 64 PTVAVLEERVAALEGGVGA-IATASGQAALHLAIATLM--------GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFV 134 (433)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEE
Confidence 5689999999999998875 567788877655555542 6799999999988755332 34579999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++|+ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+.. ..|.++|+|+
T Consensus 135 d~~-----d~~~l~~~i~---~~TklV~~e~~~np~g~v~-Di~~I~~la~~~gi~livD~t~a~~~~--~~pl~~GaD~ 203 (433)
T PRK08134 135 KPG-----DIDGWRAAIR---PNTRLLFGETLGNPGLEVL-DIPTVAAIAHEAGVPLLVDSTFTTPYL--LRPFEHGADL 203 (433)
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCcccCccc-CHHHHHHHHHHcCCEEEEECCCccccc--CCchhcCCCE
Confidence 863 8999999998 89999999998 5889999 899999999999999999998754443 4577899999
Q ss_pred EEeCCCcccCC
Q psy7357 189 SHLNLHKTFCI 199 (302)
Q Consensus 189 v~~~~hK~l~~ 199 (302)
++.|+||+++.
T Consensus 204 vv~S~tK~l~g 214 (433)
T PRK08134 204 VYHSATKFLGG 214 (433)
T ss_pred EEeccccccCC
Confidence 99999999873
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=158.32 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +.+.+|..|+.++++++. ++||+||++++.|+.... .+...|++++.+
T Consensus 61 p~~~~le~~la~l~g~~~~-v~~ssG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~v 131 (390)
T PRK08133 61 PTVTMFQERLAALEGAEAC-VATASGMAAILAVVMALL--------QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFV 131 (390)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEE
Confidence 4578899999999998764 456677776655555543 689999999998876543 345789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|.++... ....|..+|+|+
T Consensus 132 d~~-----d~~~l~~~i~---~~tklV~ie~p~NptG~v~-dl~~I~~la~~~gi~livD~t~~~~--~~~~pl~~g~Di 200 (390)
T PRK08133 132 DLT-----DLDAWRAAVR---PNTKLFFLETPSNPLTELA-DIAALAEIAHAAGALLVVDNCFCTP--ALQQPLKLGADV 200 (390)
T ss_pred CCC-----CHHHHHHhcC---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhhCCcE
Confidence 863 8999999998 78999999999 5899998 8999999999999999999976332 234566789999
Q ss_pred EEeCCCcccCCCCCCCCCcc-eeEEEeCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGM-GPIGVKSHLAPF 220 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~-G~l~~~~~l~~~ 220 (302)
++.|++|+++.+ |.++ |+++.+++++++
T Consensus 201 vv~S~sK~~~g~----g~~~GG~vv~~~~~~~~ 229 (390)
T PRK08133 201 VIHSATKYLDGQ----GRVLGGAVVGSKELMEE 229 (390)
T ss_pred EEeecceeecCC----cceEeEEEEcCHHHHHH
Confidence 999999999743 4444 778777665443
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=156.24 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +...+|+.|+.+++.++. +++|+|+++++.|+.... .+...|++++.+
T Consensus 54 p~~~~le~~la~l~g~~~~-~~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v 124 (380)
T TIGR01325 54 PTVAAFEERIAALEGAERA-VATATGMSAIQAALMTLL--------QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFV 124 (380)
T ss_pred chHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEE
Confidence 4578999999999999765 446778877756665553 678999999888875432 456789999998
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|.++|+|+
T Consensus 125 ~~~-----d~~~l~~~i~---~~tklV~le~p~np~g~~~-dl~~I~~la~~~gi~livD~a~~~~~--~~~pl~~g~Di 193 (380)
T TIGR01325 125 DPT-----DLNAWEAAVK---PNTKLVFVETPSNPLGELV-DIAALAELAHAIGALLVVDNVFATPV--LQQPLKLGADV 193 (380)
T ss_pred CCC-----CHHHHHHhcC---CCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCE
Confidence 863 7999999987 78999999999 5899998 89999999999999999999864322 23566789999
Q ss_pred EEeCCCcccCCCCCCCCCc-ceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~~l 221 (302)
++.|++|+++.+ |-. +|++++++++++.+
T Consensus 194 vv~S~sK~l~g~----g~~~gG~vv~~~~~~~~l 223 (380)
T TIGR01325 194 VVYSATKHIDGQ----GRVMGGVIAGSEELMAEV 223 (380)
T ss_pred EEeeccceecCC----CCeEEEEEEeCHHHHHHH
Confidence 999999999743 333 48888887665544
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=155.90 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +...+|+.|..+++.++. ++||+|+++++.|+.... .+...|++++.+
T Consensus 57 p~~~~le~~lA~l~g~~~~-v~~~sG~~Ai~~al~~l~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 127 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGVAA-LAVASGQAAITYAILNLA--------QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFV 127 (418)
T ss_pred hhHHHHHHHHHHHhCCCeE-EEEccHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEE
Confidence 4568999999999998654 556788877656665553 678999999988764422 356789999998
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.++++|+
T Consensus 128 ~~~-----d~~~l~~~l~---~~t~~V~le~p~NPtg~v~-dl~~I~~la~~~~i~livD~t~~~~--~~~~~l~~g~Di 196 (418)
T TIGR01326 128 DPD-----DPEEFEKAID---ENTKAVFAETIGNPAINVP-DIEAIAEVAHAHGVPLIVDNTFATP--YLCRPIDHGADI 196 (418)
T ss_pred CCC-----CHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCchh--hcCCchhcCCeE
Confidence 852 8999999998 78999999998 5899998 8999999999999999999987433 234566788999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
++.+++|+|+.+ |.++|++++++
T Consensus 197 vv~S~sK~l~g~----G~~lGg~v~~~ 219 (418)
T TIGR01326 197 VVHSATKYIGGH----GTAIGGVIVDG 219 (418)
T ss_pred EEECccccccCC----ccceEEEEEec
Confidence 999999999743 67788888864
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=151.53 Aligned_cols=172 Identities=16% Similarity=0.234 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.++++++.+..++..++|++.. ...+++.++ ++||+|+++++.|+.+...++..|.+++.++.++++.
T Consensus 62 ~~lr~~ia~~~~~~~~~i~it~G~~~~--l~~~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 134 (351)
T PRK14807 62 EKLREELARYCSVVPTNIFVGNGSDEI--IHLIMLAFI-----NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYT 134 (351)
T ss_pred HHHHHHHHHHhCCCcccEEEecCHHHH--HHHHHHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCC
Confidence 678888999999887777778887532 122222221 6899999999988776677788999999999987788
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-cCC-CCccCCcEEEeCC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-LCR-PGDYGSDVSHLNL 193 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~~~-p~~~gaDiv~~~~ 193 (302)
+|++++++++++ .++++|++++| |++|..- +.+++.+++++++.++++|.++.--... ..+ .....--|++.|.
T Consensus 135 ~d~~~l~~~~~~--~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~ 211 (351)
T PRK14807 135 YDVGSFIKVIEK--YQPKLVFLCNPNNPTGSVI-EREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTL 211 (351)
T ss_pred CCHHHHHHHhhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecc
Confidence 999999999972 37899999999 5999998 7999999999988889999987311111 001 1112223666767
Q ss_pred CcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 194 HKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 194 hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+|+.| |.|+|++++++++++.+.
T Consensus 212 SK~~~~~----GlRiG~~v~~~~~~~~~~ 236 (351)
T PRK14807 212 SKAFGLA----GLRVGYAVANENILKYLN 236 (351)
T ss_pred hHhcccc----hhceeeeecCHHHHHHHH
Confidence 7777655 899999999887766553
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=157.54 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=120.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~ 104 (302)
+.-.-....++++.++++.|.+. .+.+.||+.|..+++.++. ++||+||+++..|+.+.. .+...|+
T Consensus 64 ~r~~~pt~~~le~~la~l~g~~~-~v~fsSG~~Ai~~al~~ll--------~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi 134 (437)
T PRK05613 64 SRLTNPTVEALENRIASLEGGVH-AVAFASGQAAETAAILNLA--------GAGDHIVTSPRLYGGTETLFLVTLNRLGI 134 (437)
T ss_pred eCccChHHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHhc--------CCCCEEEECCCccHHHHHHHHHHHHhcCe
Confidence 33344678999999999999865 4566788876655555443 689999999989887632 3467899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
++++++ ++ .|+++++++++ ++|++|++.+| |++|.+. |+++|+++||++|+++++|+++.. +...+|.+
T Consensus 135 ~v~~vd-~~---~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~-di~~I~~la~~~gi~livD~t~a~--g~~~~p~~ 204 (437)
T PRK05613 135 EVTFVE-NP---DDPESWQAAVQ---PNTKAFFGETFANPQADVL-DIPAVAEVAHRNQVPLIVDNTIAT--AALVRPLE 204 (437)
T ss_pred EEEEEC-CC---CCHHHHHHhCC---ccCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCeEEEECCCcc--ccccChHH
Confidence 999998 33 28999999998 78999998877 6888888 899999999999999999998643 33356778
Q ss_pred cCCcEEEeCCCcccC
Q psy7357 184 YGSDVSHLNLHKTFC 198 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~ 198 (302)
+|+|+++.|+||+++
T Consensus 205 ~GaDivv~S~~K~l~ 219 (437)
T PRK05613 205 LGADVVVASLTKFYT 219 (437)
T ss_pred hCCCEEEeeccceec
Confidence 999999999999886
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=155.05 Aligned_cols=161 Identities=22% Similarity=0.205 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+. .+...+|..|..+++.++. ++||+|++++..|+.... .++..|++++.+
T Consensus 70 p~~~~le~~lA~l~g~~~-al~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~v 140 (403)
T PRK07810 70 PTVSMFEERLRLIEGAEA-CFATASGMSAVFTALGALL--------GAGDRLVAARSLFGSCFVVCNEILPRWGVETVFV 140 (403)
T ss_pred chHHHHHHHHHHHhCCCc-EEEECChHHHHHHHHHHHh--------CCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEE
Confidence 347899999999999875 4566788877655555543 689999999887755432 355789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|.++|+|+
T Consensus 141 d~-----~d~~~l~~ai~---~~tklV~~esp~Nptg~v~-dl~~I~~la~~~g~~vivD~a~a~~~--~~~~~~~gaDi 209 (403)
T PRK07810 141 DG-----EDLSQWEEALS---VPTQAVFFETPSNPMQSLV-DIAAVSELAHAAGAKVVLDNVFATPL--LQRGLPLGADV 209 (403)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCCccc--cCChhhcCCcE
Confidence 75 38999999998 78999999999 5899998 89999999999999999999864332 33566789999
Q ss_pred EEeCCCcccCCCCCCCCCc-ceeEEEeCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPG-MGPIGVKSHLA 218 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~ 218 (302)
++.+++|+|+++ |.. +|+++++++.+
T Consensus 210 vv~S~tK~l~g~----g~~~gG~v~~~~~~~ 236 (403)
T PRK07810 210 VVYSGTKHIDGQ----GRVLGGAILGDREYI 236 (403)
T ss_pred EEccCCceecCC----cCceeEEEEeChHHH
Confidence 999999999742 333 58888887543
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=157.67 Aligned_cols=179 Identities=17% Similarity=0.192 Sum_probs=133.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Ce-eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DK-ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~-~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+++++.+|. +. .++..++|+ ++...++.++. ++||+|++++|.|+.+...++..|.
T Consensus 77 ~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~--------~~Gd~Vlv~~P~y~~~~~~~~~~g~ 148 (405)
T PRK06207 77 YRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV--------ARGDKVAIVQPDYFANRKLVEFFEG 148 (405)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCC
Confidence 578899999999999999895 33 566667776 44433333332 6899999999999888888889999
Q ss_pred EEEEeecCC-----CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-c
Q psy7357 105 SVEPVSVRK-----DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-Q 175 (302)
Q Consensus 105 ~v~~i~~~~-----~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~ 175 (302)
+++.++++. +..+|+++|+++++ +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++..- .
T Consensus 149 ~v~~v~~~~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~ 225 (405)
T PRK06207 149 EMVPVQLDYLSADKRAGLDLDQLEEAFK---AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY 225 (405)
T ss_pred EEEEEeccccCcccCCCcCHHHHHHhhh---hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 999999862 45789999999997 67889999999 5999874 15888999999999999999986421 1
Q ss_pred cc--cCCCCccCC---c-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VG--LCRPGDYGS---D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~--~~~p~~~ga---D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ ......+.. . |++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lp----GlRiG~ii~~~~l~~~~~ 274 (405)
T PRK06207 226 DGTSYTHLRALPIDPENVITIMGPSKTESLS----GYRLGVAFGSPAIIDRME 274 (405)
T ss_pred CCCCCCchhcCCCCcCcEEEEecchhhccCc----ccceEEEEcCHHHHHHHH
Confidence 11 111111111 2 6666677877755 899999999887776653
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-17 Score=152.02 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=130.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++.+.+.+.+|.+ .. ++..++|+ ++...++.+ +. ++||.|+++++.|+.+...++..|.
T Consensus 66 ~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~---~~-----~~gd~vlv~~P~y~~~~~~~~~~G~ 137 (383)
T TIGR03540 66 YEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLA---FV-----NPGDIVLVPDPGYPVYRIGTLFAGG 137 (383)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHH---hC-----CCCCEEEEeCCCCcchHHHHHhcCC
Confidence 5788888888888888777763 33 46666676 433232222 21 6899999999999888888889999
Q ss_pred EEEEeecCCC-C-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-
Q psy7357 105 SVEPVSVRKD-G-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 105 ~v~~i~~~~~-g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~- 177 (302)
+++.+|.+++ | .+|++++++.+. +++++|++++| |++|...+ .+++|.++|+++|+++|+|.++.- ....
T Consensus 138 ~v~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~ 214 (383)
T TIGR03540 138 EPYEMPLKEENGFLPDFDAIPEDIA---KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY 214 (383)
T ss_pred EEEEEecCcccCCccCHHHHHhhcc---ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC
Confidence 9999999753 3 579999999987 68899999998 59998741 489999999999999999998731 1111
Q ss_pred -cCCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -LCRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -~~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.. .....|++.+..|+|+.| |.|+|++++++++.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~i~~~SfSK~~g~~----GlRiG~~i~~~~l~~~~~ 260 (383)
T TIGR03540 215 KAPSFLEVDGAKDVGIEFHSLSKTYNMT----GWRIGMAVGNADLIAGLG 260 (383)
T ss_pred CCcCcccCCCcccCEEEEEecccccCCc----cceeeEEeCCHHHHHHHH
Confidence 01111 112236667777777644 889999999887766553
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=157.12 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~ 108 (302)
-.-...+++++++|-|.+.+.+ ..||..|..++++++. ++||+||+++..|+..... ++..|+++.+
T Consensus 61 nPt~~~le~~la~LEg~~~a~~-~~SGmaAi~~~~~~ll--------~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~ 131 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCAL-YPCGAAAVANAILAFV--------EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTW 131 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEE-EhHHHHHHHHHHHHHc--------CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEE
Confidence 3567889999999999887655 4558777655555553 6899999998888665443 4567999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC--CEEEEecCCcccccccCCCCccC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG--GQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g--~llivD~a~~~~~~~~~~p~~~g 185 (302)
++. .|.++++++++ ++|++|++++| |++|.+. |+++|+++||++| ++++||+++.. +.+.+|.++|
T Consensus 132 vd~-----~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~-DI~~Ia~ia~~~g~g~~lvVDnT~a~--p~~~~pl~~G 200 (395)
T PRK08114 132 FDP-----LIGADIAKLIQ---PNTKVVFLESPGSITMEVH-DVPAIVAAVRSVNPDAVIMIDNTWAA--GVLFKALDFG 200 (395)
T ss_pred ECC-----CCHHHHHHhcC---CCceEEEEECCCCCCCEee-cHHHHHHHHHHhCCCCEEEEECCCcc--ccccCHHHcC
Confidence 874 47899999998 78999999998 6899999 8999999999985 99999987644 3347899999
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
+|+++.|+||+|+++- .-.+|+++.++++++
T Consensus 201 aDivv~S~tKyl~Ghs---dv~~G~v~~~~~~~~ 231 (395)
T PRK08114 201 IDISIQAGTKYLVGHS---DAMIGTAVANARCWE 231 (395)
T ss_pred CcEEEEcCcccccCCC---cceeEEEEcCHHHHH
Confidence 9999999999998542 236788877765544
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=156.65 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+. ...+|..|+.+++.++. ++||+||++++.|+.... .....|+++..+
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~-~~~sG~~Ai~~al~all--------~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~ 120 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCY-LYPSGLAAVTNSILAFV--------KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYY 120 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEE-EECcHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 45678999999999987654 45677777656655553 689999999988765443 234678888877
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ +.++++++++ ++|++|++++| |++|... |+++|+++||++|+++++|+++..+. ..+|.++|+|+
T Consensus 121 d~~-----~~e~l~~~i~---~~tklV~lesp~Np~g~~~-dl~~I~~la~~~g~~livD~t~a~g~--~~~pl~~gaDi 189 (377)
T TIGR01324 121 DPL-----IGEDIATLIQ---PNTKVLFLEAPSSITFEIQ-DIPAIAKAARNPGIVIMIDNTWAAGL--LFKPLEHGVDI 189 (377)
T ss_pred CCC-----CHHHHHHhcC---CCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcccc--ccCccccCceE
Confidence 542 2378999988 88999999998 5888888 89999999999999999999875443 34688899999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.+++|+++.+ ++..+|+++++++.++++
T Consensus 190 vv~S~tK~l~G~---~d~~gG~v~~~~~~~~~l 219 (377)
T TIGR01324 190 SIQAGTKYLVGH---SDIMIGTVVANARTWDQL 219 (377)
T ss_pred EEecCceeccCC---CCceEEEEEeCHHHHHHH
Confidence 999999999854 233578888887665544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=155.73 Aligned_cols=169 Identities=20% Similarity=0.172 Sum_probs=132.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v 106 (302)
.......++++.+++++|.+.+ +...+|..|+.+++.++. +++|+|+++++.|+.... .+...|+++
T Consensus 37 ~~~p~~~~le~~la~l~g~~~a-~~~~sG~~Ai~~~l~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~ 107 (369)
T cd00614 37 IGNPTVDALEKKLAALEGGEAA-LAFSSGMAAISTVLLALL--------KAGDHVVASDDLYGGTYRLFERLLPKLGIEV 107 (369)
T ss_pred CCChhHHHHHHHHHHHHCCCCE-EEEcCHHHHHHHHHHHHc--------CCCCEEEECCCCcchHHHHHHHHHhhcCeEE
Confidence 3447789999999999998765 445778777656665553 689999999988876543 344678899
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.++.+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.+++
T Consensus 108 ~~v~~~-----d~~~l~~~i~---~~~~~v~~e~~~np~g~~~-dl~~i~~la~~~g~~livD~t~~~~--~~~~~~~~g 176 (369)
T cd00614 108 TFVDPD-----DPEALEAAIK---PETKLVYVESPTNPTLKVV-DIEAIAELAHEHGALLVVDNTFATP--YLQRPLELG 176 (369)
T ss_pred EEeCCC-----CHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcch--hcCChhhhC
Confidence 888863 6999999997 68999999998 6899998 8999999999999999999986433 234567789
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lp 222 (302)
+|+++.+++|+++.+ |...+|++++++ ++++++.
T Consensus 177 ~Divv~S~tK~l~g~---~~~~gG~v~~~~~~l~~~l~ 211 (369)
T cd00614 177 ADIVVHSATKYIGGH---SDVIAGVVVGSGEALIQRLR 211 (369)
T ss_pred CcEEEeccceeccCC---CCceEEEEEeCcHHHHHHHH
Confidence 999999999998743 225689999987 6665553
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=153.57 Aligned_cols=176 Identities=17% Similarity=0.157 Sum_probs=136.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 31 GYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
+..++-.++-+++++++|.+. .-..+++|+++++.++.+.|.+ .++..+++|+.+|.+....+...|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~------~~~~vvy~S~~aH~Sv~KAa~llgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh------cCCcEEEEcCCccHHHHHHHHhcCCcce
Confidence 688889999999999999864 2345667778776777666643 2345889999999888889999999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCC-----EEEEecCCccccccc--C
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGG-----QVYLDGANMNAQVGL--C 179 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~-----llivD~a~~~~~~~~--~ 179 (302)
.||++++|.+|+++|+++|+++..++.+|+.+-++ .+|.++ |+++|+++|+++|+ ++|||+|..-....+ .
T Consensus 204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiD-pi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~ 282 (470)
T PLN02263 204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVD-DLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR 282 (470)
T ss_pred EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCC-CHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc
Confidence 99999999999999999998544445666666665 789999 89999999999997 999999853111111 1
Q ss_pred CC---CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 180 RP---GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 180 ~p---~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
.| +..++|-++.+.||++..|+ +.|+++++++..
T Consensus 283 ~~~~df~~~vDSIsvD~HK~l~~P~-----~cgvll~R~~~~ 319 (470)
T PLN02263 283 APKVTFKKPIGSVSVSGHKFVGCPM-----PCGVQITRMEHI 319 (470)
T ss_pred ccccCCCcCccEEEECCccccCCCc-----CEEEEEEehhhH
Confidence 11 12248999999999999874 567888886544
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=152.15 Aligned_cols=169 Identities=20% Similarity=0.267 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.++++++++..++..++|++ +...++.++. +++|+|+++++.|+.+...++..|.+++.+|+++++
T Consensus 57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~--------~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 128 (346)
T TIGR01141 57 AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL--------EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDG 128 (346)
T ss_pred HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCC
Confidence 5788999999998776677777764 4323333332 578999999998876666778899999999998888
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCC----CccCCcE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRP----GDYGSDV 188 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p----~~~gaDi 188 (302)
.+|++++++.++ +++++|++++| |++|... +++++.++++.+ |+++++|.++. .+..-..+ .....++
T Consensus 129 ~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~-~~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i 203 (346)
T TIGR01141 129 QLDLEDILVAID---DKPKLVFLCSPNNPTGNLL-SRSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLI 203 (346)
T ss_pred CCCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEE
Confidence 899999999876 78899999998 5999998 799999999887 99999999864 11110011 1122246
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++.+.+|+|+.| |+|+|++++++++.+++.
T Consensus 204 ~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~ 233 (346)
T TIGR01141 204 VLRTLSKAFGLA----GLRIGYAIANAEIIDALN 233 (346)
T ss_pred EEehhhHhhhch----hhhceeeecCHHHHHHHH
Confidence 677788988644 789999999887766654
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-17 Score=153.42 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=127.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~ 105 (302)
.+......+++++++++.|.+. .+...+|+.+...++.++. ++||+|+++.+.|+... ..++..|.+
T Consensus 56 R~~~p~~~~Le~~lA~l~g~~~-~v~~~sG~~Ai~~~l~all--------~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~ 126 (405)
T PRK08776 56 RSGNPTRDLLGEALAELEGGAG-GVITATGMGAINLVLNALL--------QPGDTLVVPHDAYGGSWRLFNALAKKGHFA 126 (405)
T ss_pred CCCChHHHHHHHHHHHHhCCCc-eEEEcCHHHHHHHHHHHHh--------CCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence 3344567889999999999865 4566778765544444432 68999999988887533 234566888
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.++. .|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++... ....|.++
T Consensus 127 v~~v~~-----~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~-dl~~I~~la~~~gi~vIvD~a~a~~--~~~~pl~~ 195 (405)
T PRK08776 127 LITADL-----TDPRSLADALA---QSPKLVLIETPSNPLLRIT-DLRFVIEAAHKVGALTVVDNTFLSP--ALQKPLEF 195 (405)
T ss_pred EEEECC-----CCHHHHHHhcC---cCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCCccc--ccCCcccc
Confidence 888875 48999999997 78999999999 6999998 8999999999999999999987433 23467778
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
|+|+++.|.||+|+.| |+-..|+++++ +++.+++
T Consensus 196 gaDivv~S~tK~l~g~---~~~~~G~vv~~~~~l~~~l 230 (405)
T PRK08776 196 GADLVLHSTTKYINGH---SDVVGGAVVARDAELHQQL 230 (405)
T ss_pred cCCEEEecCceeecCC---CCceEEEEEeCCHHHHHHH
Confidence 9999999999999843 22236777775 4554444
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=146.21 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++.+|+.++. ..+||+.|...+++++. -++||+||+|...|..+.......|++++++++|+
T Consensus 34 ~~v~~FE~~~ae~~G~k~av-a~~sgT~AL~laL~al~-------ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~ 105 (374)
T COG0399 34 PFVRRFEQAFAEYLGVKYAV-AVSSGTAALHLALLALA-------IGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP 105 (374)
T ss_pred hHHHHHHHHHHHHhCCCeEE-EecChHHHHHHHHHhcC-------CCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCC
Confidence 46789999999999999874 46788877655555433 27899999999988777777779999999999997
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
+ +.+|++.||++|+ ++|++|+..+ .+|... |+++|.++|++||+++|-|+||..+..-- ...|.+| |+.++
T Consensus 106 ~T~nid~~~ie~aIt---~~tKAIipVh--l~G~~~-dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~G-d~~~f 178 (374)
T COG0399 106 DTLNIDPDLIEAAIT---PRTKAIIPVH--LAGQPC-DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFG-DIGAF 178 (374)
T ss_pred cccCCCHHHHHHHcc---cCCeEEEEeh--hccCCC-CHHHHHHHHHHcCCeEEEEcchhccCeecCccccccc-ceEEE
Confidence 4 8999999999999 8899999977 778888 89999999999999999999985443321 4567776 88777
Q ss_pred CCC--cccCCCCCCCCCcceeEEEeC-CCCCCC-----CCCccc---C-------CCCcchhhhHHHHhhHh------hH
Q psy7357 192 NLH--KTFCIPHGGGGPGMGPIGVKS-HLAPFL-----PVHPLS---S-------IDSSIGAVSAAHYGSAS------IL 247 (302)
Q Consensus 192 ~~h--K~l~~p~~~gGp~~G~l~~~~-~l~~~l-----pg~~~~---~-------~~~~l~~~~a~~~~~~~------~~ 247 (302)
|.| |.+. . | -+|++.+++ ++++++ -|.... + .|.-|..+.|++-..-+ +.
T Consensus 179 SF~~~K~it----t-g-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~ 252 (374)
T COG0399 179 SFHATKNLT----T-G-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINE 252 (374)
T ss_pred EecCCCCcc----c-c-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 754 4443 2 2 568999984 666654 233220 1 56777777765554432 11
Q ss_pred HH---HHHHHHHHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 248 PI---SWAYIRRLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 248 ~~---~~~y~~~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
.+ +..|.+.|+ .++.+.....+.....|++.+.+++- |.+-.++.+.|-
T Consensus 253 ~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~----~~~R~~l~~~L~ 306 (374)
T COG0399 253 RRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE----GISRDALMESLK 306 (374)
T ss_pred HHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC----CCCHHHHHHHHH
Confidence 11 114554665 35666655444235689999998852 466666766664
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=156.69 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
-..++++.++++.|.+.+ +...+|..|+.++++++. ++||+||++++.|+.... .....|+++..++
T Consensus 62 t~~~Le~~iA~le~~~~~-~~~~sG~~Ai~~~l~all--------~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~ 132 (394)
T PRK09028 62 THFAFQAAIVELEGGAGT-ALYPSGAAAISNALLSFL--------KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYD 132 (394)
T ss_pred hHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEEC
Confidence 356888999999887654 345667777655665553 689999999998865543 2346788888776
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
.+ |.++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ...+|.++|+|++
T Consensus 133 ~~-----~~e~l~~~l~---~~TklV~lespsNPtg~v~-dl~~I~~la~~~g~~lvvD~t~a~p--~~~~Pl~~GaDiv 201 (394)
T PRK09028 133 PM-----IGEGIRELIR---PNTKVLFLESPGSITMEVQ-DVPTLSRIAHEHDIVVMLDNTWASP--INSRPFEMGVDIS 201 (394)
T ss_pred CC-----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCcccc--ccCCccccCceEE
Confidence 42 5688999987 88999999999 5889888 8999999999999999999987443 3467889999999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+.++||+++++ +.--.|.++.++++.+++
T Consensus 202 v~S~tK~l~Gh---~d~~~G~~~~~~~~~~~l 230 (394)
T PRK09028 202 IQAATKYIVGH---SDVMLGTATANEKHWDQL 230 (394)
T ss_pred EEeCCeEecCC---CCEEEEEEECCHHHHHHH
Confidence 99999999844 223467776665554433
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-17 Score=153.85 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=129.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~ 104 (302)
+........++++.++++.|.+. .+..++|+.+..+++. +. ++||+||++++.|+.+.. .++..|+
T Consensus 49 ~r~~~p~~~~le~~lA~l~g~~~-~v~~~sG~~ai~~~l~-~l--------~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~ 118 (390)
T PRK08064 49 SRSGNPTREALEDIIAELEGGTK-GFAFASGMAAISTAFL-LL--------SKGDHVLISEDVYGGTYRMITEVLSRFGI 118 (390)
T ss_pred cCCCChhHHHHHHHHHHHhCCCC-eEEECCHHHHHHHHHH-Hh--------CCCCEEEEccCccchHHHHHHHHHHHcCC
Confidence 33444678899999999999885 4556888765533332 21 579999999999875432 3456899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.+ |+++++++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|+++.... ...|.+
T Consensus 119 ~v~~v~~~-----d~~~l~~~l~---~~tklV~l~~p~NptG~~~-dl~~I~~la~~~g~~vvvD~a~~~~~--~~~~~~ 187 (390)
T PRK08064 119 EHTFVDMT-----NLEEVAQNIK---PNTKLFYVETPSNPLLKVT-DIRGVVKLAKAIGCLTFVDNTFLTPL--LQKPLD 187 (390)
T ss_pred EEEEECCC-----CHHHHHHhcC---CCceEEEEECCCCCCcEec-cHHHHHHHHHHcCCEEEEECCCCccc--ccCchh
Confidence 99999863 7999999998 78999999999 5899998 89999999999999999999864332 234667
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
+|+|+++.++||++++|. |...|+++++ +++.+++
T Consensus 188 ~g~Divv~S~tK~~~G~~---~~laG~~v~~~~~~~~~l 223 (390)
T PRK08064 188 LGADVVLHSATKFLAGHS---DVLAGLAVVKDEELAQKL 223 (390)
T ss_pred hCCcEEEeecceeccCCc---cceeEEEEeCCHHHHHHH
Confidence 899999999999998442 2235877776 4565554
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=153.34 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
....++++.++++.|.+.+ +...+|..|..+++.++. ++||+||++++.|+.+.. .+...|++++.++
T Consensus 47 p~~~~lE~~la~leg~~~~-v~~ssG~~Ai~~~l~all--------~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~ 117 (397)
T PRK05939 47 PTTAALEAKITKMEGGVGT-VCFATGMAAIAAVFLTLL--------RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVD 117 (397)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHHc--------CCCCEEEECCCccccHHHHHHHHHhcCCEEEEEC
Confidence 5688999999999998875 456678776655555543 689999999999887654 3457899999998
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ...+|.++|+|++
T Consensus 118 ~-----~d~e~l~~~l~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~t~a~~--~~~~~~~~gaDiv 186 (397)
T PRK05939 118 A-----TDVQNVAAAIR---PNTRMVFVETIANPGTQVA-DLAGIGALCRERGLLYVVDNTMTSP--WLFRPKDVGASLV 186 (397)
T ss_pred C-----CCHHHHHHhCC---CCCeEEEEECCCCCCCCHH-hHHHHHHHHHHcCCEEEEECCcccc--cccCccccCCEEE
Confidence 6 38999999998 88999999998 6899998 8999999999999999999986433 2346778899999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+.+++|+|+.+ |..+|.+++.
T Consensus 187 v~S~sK~~~g~----g~~igg~v~~ 207 (397)
T PRK05939 187 INSLSKYIAGH----GNALGGAVTD 207 (397)
T ss_pred EecCeecccCC----CCeEEEEEec
Confidence 99999999853 4565665553
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-18 Score=159.47 Aligned_cols=168 Identities=23% Similarity=0.281 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.+.|.|+.+++++|++.+.+..++++.++.++++++. ++||+||+++..|-+....+.+.|+++++++...+
T Consensus 67 ~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~--------~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~ 138 (417)
T PF01276_consen 67 IIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALC--------RPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDN 138 (417)
T ss_dssp HHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHT--------TTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhc--------CCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCcc
Confidence 5899999999999999987777766678888888776 78999999999998888888899999999987421
Q ss_pred -----CCCCH-----HHHHHHHhccCCCeEE---EEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc--ccc-
Q psy7357 115 -----GTIDF-----SDLETKVKKNKETLSC---LMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ--VGL- 178 (302)
Q Consensus 115 -----g~iD~-----~~l~~~i~~~~~~t~~---V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~~- 178 (302)
+.+++ +.|+++|+++ ++.++ |++++|+++|++. |+++|+++||++|.+++||+|+.... ..+
T Consensus 139 ~~gi~~~i~~~~~~~~~i~~~l~~~-p~~k~~~~vvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhGah~~F~~lp 216 (417)
T PF01276_consen 139 EYGIIGGISPDEFNEEDIEEALKEH-PDAKAPRLVVLTSPTYYGVCY-DIKEIAEICHKHGIPLLVDEAHGAHFGFHPLP 216 (417)
T ss_dssp TTS-BEEB-GGGGSHHHHHHHHHHC-TTCHCESEEEEESS-TTSEEE--HHHHHHHHCCTECEEEEE-TT-TTGGCSGGG
T ss_pred ccCCccCCChhhhhHHHHHHHHHhC-ccccCceEEEEeCCCCCeEEE-CHHHHHHHhcccCCEEEEEccccccccCCCCc
Confidence 24677 9999999987 44444 9999999999999 89999999999999999999974222 222
Q ss_pred CCCCccCCc-------EEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 179 CRPGDYGSD-------VSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 179 ~~p~~~gaD-------iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.+.-..|+| +++.|+||+++.- -+..+|-++.+.
T Consensus 217 ~~a~~~gad~~~~~~~~vvqS~HKtL~al-----tQts~lh~~~~~ 257 (417)
T PF01276_consen 217 RSALALGADRPNDPGIIVVQSTHKTLPAL-----TQTSMLHVKGDR 257 (417)
T ss_dssp TTCSSTTSS-CTSBEEEEEEEHHHHSSS------TT-EEEEEETCC
T ss_pred cchhhccCccccccceeeeechhhccccc-----ccceEEEecCCC
Confidence 234567899 9999999999832 267888888653
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=155.22 Aligned_cols=184 Identities=12% Similarity=0.180 Sum_probs=135.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
..|.| .+|..++++++++.+++++|++. .++..++|+ ++...++.++. ++||+|+++++.|..+.
T Consensus 60 ~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~ 128 (384)
T PRK12414 60 NQYAP---MAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALV--------HPGDEVIYFEPSFDSYA 128 (384)
T ss_pred CCcCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc--------CCCCEEEEeCCCccchH
Confidence 34554 68999999999999999999852 245555555 54433333332 68999999999998887
Q ss_pred HHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 97 ASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
..++..|.+++.+|.++ ++.+|+++|+++++ +++++|++++| |+||.+ ..++++|.++|+++|+++++|.++.
T Consensus 129 ~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~ 205 (384)
T PRK12414 129 PIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT---PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE 205 (384)
T ss_pred HHHHHcCCEEEEEecCccccccCHHHHHhhcC---cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence 78888999999999875 45799999999997 68899999999 599986 2279999999999999999999863
Q ss_pred c-cccc--cCCCCc----cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 173 N-AQVG--LCRPGD----YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 173 ~-~~~~--~~~p~~----~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. .... ..+... .+--|++.|.+|+|+.| |.|+|++.+++++++.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRiG~~v~~~~l~~~l~ 258 (384)
T PRK12414 206 HVVFDGARHHSMARHRELAERSVIVSSFGKSYHVT----GWRVGYCLAPAELMDEIR 258 (384)
T ss_pred hccCCCCCccCcccCcCccCcEEEEecccccccCc----cceEEEEecCHHHHHHHH
Confidence 1 1111 001111 11127777777777655 899999999987766553
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-17 Score=152.95 Aligned_cols=165 Identities=20% Similarity=0.208 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+.+ ..+|+.|..+++.++. +++|+|+++++.|+..... ....|++++.+
T Consensus 61 p~~~~Le~~lA~~~g~~~~i~-~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~ 131 (388)
T PRK07811 61 PTRTALEEQLAALEGGAYGRA-FSSGMAATDCLLRAVL--------RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPV 131 (388)
T ss_pred ccHHHHHHHHHHHhCCCceEE-eCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEe
Confidence 457899999999999987644 4677776655555543 6899999999988754332 22357888777
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|...++|+
T Consensus 132 d~-----~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~-dl~~I~~la~~~gi~lIvD~a~a~~--~~~~p~~~gaDi 200 (388)
T PRK07811 132 DL-----SDLDAVRAAIT---PRTKLIWVETPTNPLLSIT-DIAALAELAHDAGAKVVVDNTFASP--YLQQPLALGADV 200 (388)
T ss_pred CC-----CCHHHHHHhcC---cCCeEEEEECCCCCcceec-CHHHHHHHHHHcCCEEEEECCCCcc--ccCCchhhCCcE
Confidence 65 48999999998 78999999999 5899998 8999999999999999999986433 223566788999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|++|+|+.| |+-.+|+++++ +++.+++
T Consensus 201 vv~S~sK~l~g~---~~~~gG~vv~~~~~l~~~~ 231 (388)
T PRK07811 201 VVHSTTKYIGGH---SDVVGGALVTNDEELDEAF 231 (388)
T ss_pred EEecCceeecCC---CCcEEEEEEECCHHHHHHH
Confidence 999999999732 12236888886 4454443
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=150.59 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
..++++.+++++|++..++..++|+ ++...++.++. .++|+|+++++.|..+...++..|.+++.+|++.
T Consensus 68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~ 139 (380)
T PRK06225 68 FPELRELILKDLGLDDDEALITAGATESLYLVMRAFL--------SPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSE 139 (380)
T ss_pred hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCCCcchHHHHHHhCceEEeeccccc
Confidence 5567788888899887666666665 44433333322 5789999999988777777888999999999742
Q ss_pred --CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccccccCCCC--ccCC
Q psy7357 114 --DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG--DYGS 186 (302)
Q Consensus 114 --~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~--~~ga 186 (302)
++.+|++++++.++ +++++|++++| |++|.+. +++++|.++|+++|+++|+|+++.--........ ....
T Consensus 140 ~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 216 (380)
T PRK06225 140 ECNYKLTPELVKENMD---ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEH 216 (380)
T ss_pred cCCccCCHHHHHhhcC---CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCC
Confidence 34799999999997 78899999999 5899862 2699999999999999999987520000000001 1123
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+++.+.+|+|+.| |.++|++++++++++.+..
T Consensus 217 ~i~~~s~SK~~g~~----G~RiG~i~~~~~l~~~~~~ 249 (380)
T PRK06225 217 TVTSYSFSKIFGMA----GLRIGAVVATPDLIEVVKS 249 (380)
T ss_pred EEEEeechhhcCCc----cceeEEEecCHHHHHHHHH
Confidence 46666777888644 7899999999887776543
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=154.57 Aligned_cols=167 Identities=19% Similarity=0.237 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEE--
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSV-- 106 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v-- 106 (302)
+...++++ + +++|++..++..++|+ .+...++.++ +. .+ .++++|++++.+|++... .++..|+++
T Consensus 71 ~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~---~~-~~-~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~ 143 (406)
T TIGR01814 71 TLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASF---YK-PT-PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEE 143 (406)
T ss_pred hhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHh---cC-Cc-CCccEEEecCCCCChHHHHHHHHHHhcCCCccc
Confidence 34444444 4 7899876555544444 4432333332 11 11 123478888889988543 245678887
Q ss_pred --EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 107 --EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 107 --~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+.++.+++|.+|++++++.++...++|++|++++++ .+|.+. |+++|+++||++|+++++|++|..+...+ +..+
T Consensus 144 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~-~~~~i~~~~~~~g~~~~vD~aq~~G~~~i-d~~~ 221 (406)
T TIGR01814 144 SMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLF-DMAAITRAAHAKGALVGFDLAHAVGNVPL-DLHD 221 (406)
T ss_pred ceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceec-CHHHHHHHHHHcCCEEEEEcccccCCccc-cccc
Confidence 567766678899999999986544789999999875 789999 79999999999999999999997766553 4567
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+++|++++++||||+ |||| |.+++++
T Consensus 222 ~gvD~~~~s~hK~l~-----g~pG-~~l~v~~ 247 (406)
T TIGR01814 222 WGVDFACWCTYKYLN-----AGPG-AGAFVHE 247 (406)
T ss_pred CCCCEEEEcCccccC-----CCCC-eEEEEeh
Confidence 899999999999997 3566 5566544
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=155.20 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
....++++.+++++| +...+...+|++++..++.++. +++|+|+++++.|.++.. .+...|++++.+|
T Consensus 32 ~~~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 102 (338)
T cd06502 32 PTTAKLEARAAELFG-KEAALFVPSGTAANQLALAAHT--------QPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVP 102 (338)
T ss_pred HHHHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHhc--------CCCCeEEEecCcceeeecCCcHHHHcCceEEeec
Confidence 457888999999999 5556667777766544444432 678999999999876432 3456899999999
Q ss_pred cCCCCCCCHHHHHHHHhcc----CCCeEEEEEecCCCceec---cccHHHHHHHHHHhCCEEEEecCCcccc---ccc-C
Q psy7357 111 VRKDGTIDFSDLETKVKKN----KETLSCLMITYPSTFGVF---EENITDVCELIHEHGGQVYLDGANMNAQ---VGL-C 179 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn~~G~~---~~di~~I~~ia~~~g~llivD~a~~~~~---~~~-~ 179 (302)
.+. +.+|+++|++++++. .+++++|++++||.+|.+ . |+++|.++|+++|+++++|+++.... .+. .
T Consensus 103 ~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~-~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~ 180 (338)
T cd06502 103 GEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLD-ELKAISALAKENGLPLHLDGARLANAAAALGVAL 180 (338)
T ss_pred CCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHH-HHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCH
Confidence 854 779999999999742 137899999999754643 4 78999999999999999999863221 111 0
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.....++|+++.++||+|+.| ++++++.++++++++.
T Consensus 181 ~~~~~~~d~~~~s~sK~~~~~------~g~~~~~~~~~~~~~~ 217 (338)
T cd06502 181 KTYKSGVDSVSFCLSKGGGAP------VGAVVVGNRDFIARAR 217 (338)
T ss_pred HHHHhcCCEEEEeccccCCCc------cceEEECCHHHHHHHH
Confidence 111246899999999999754 4456666777766653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=154.63 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=132.8
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++++.+.+.+.+| .+..++..++|+ ++...++.++. +++|+|+++++.|+.+...++..|++
T Consensus 60 ~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 131 (382)
T PRK06108 60 NLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV--------GPGDEVVAVTPLWPNLVAAPKILGAR 131 (382)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc--------CCCCEEEEeCCCccchHHHHHHCCCE
Confidence 68999999999999998888 555566666665 44433333322 67899999999998888888899999
Q ss_pred EEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc-c-c
Q psy7357 106 VEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ-V-G 177 (302)
Q Consensus 106 v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~-~-~ 177 (302)
++.+|.+.+ +.+|++++++.++ +++++|++++| |++|... +++++|.++|+++|+++|+|.++..-. . .
T Consensus 132 ~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 208 (382)
T PRK06108 132 VVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG 208 (382)
T ss_pred EEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC
Confidence 999999742 3689999999987 68899999999 5899763 158999999999999999999863111 1 0
Q ss_pred cCCC------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 LCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~~~p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
-..+ ....-.+++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~~~~~~~~~~~~~ 255 (382)
T PRK06108 209 GRAPSFLDIAEPDDRIIFVNSFSKNWAMT----GWRLGWLVAPPALGQVLE 255 (382)
T ss_pred CCCCCHhhcCCCcCCEEEEeechhhccCc----ccceeeeeCCHHHHHHHH
Confidence 0001 0112247777888888654 789999999887766553
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=149.94 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=130.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.+ .. ++..++|++ +... +++.++ ++||.|+++++.|+.+...++..|.
T Consensus 68 ~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~---~~~~~~-----~~gd~Vl~~~P~y~~~~~~~~~~g~ 139 (385)
T PRK09276 68 YEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAH---IPLAFV-----NPGDVVLVPDPGYPVYKIGTIFAGG 139 (385)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHH---HHHHhC-----CCCCEEEEcCCCCcChHHHHHHcCC
Confidence 5677788888888887776753 33 466767764 3322 222222 6899999999999888888889999
Q ss_pred EEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-ccc-
Q psy7357 105 SVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVG- 177 (302)
Q Consensus 105 ~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~- 177 (302)
+++.+|.+.+ ..+|++++++.+. +++++|+++|| |+||.+.+ ++++|.++|+++|+++|+|.++..- ...
T Consensus 140 ~~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 216 (385)
T PRK09276 140 EPYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY 216 (385)
T ss_pred EEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC
Confidence 9999998643 4589999999887 68899999999 59998742 3789999999999999999987311 111
Q ss_pred -cCCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -LCRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -~~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+. ...+..|++.+.+|.|+.| |.|+|++++++++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~i~~~~l~~~~~ 262 (385)
T PRK09276 217 KPPSFLEVPGAKDVGIEFHSLSKTYNMT----GWRIGFAVGNADLIAGLG 262 (385)
T ss_pred CCCChhccCCCcCCEEEEecchhhcCCc----chhheeeeCCHHHHHHHH
Confidence 1111 1122346777777877655 889999999887766553
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=156.26 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=136.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+.|.+ .+|..++++.+.+.+.+..|.+ .. ++..++|+ +|...++.++. ++||+|+++++.|+.+.
T Consensus 85 ~~Y~~---~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~ 153 (413)
T PLN00175 85 NQYAR---GFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI--------NPGDEVILFAPFYDSYE 153 (413)
T ss_pred CCcCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC--------CCCCEEEEeCCCchhHH
Confidence 34555 6799999999999998888864 33 46667776 44433333332 68999999999998888
Q ss_pred HHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 97 ASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~ 172 (302)
..++..|.+++.+++++ ++.+|+++|++.++ +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++.
T Consensus 154 ~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~---~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~ 230 (413)
T PLN00175 154 ATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT---SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYD 230 (413)
T ss_pred HHHHHcCCEEEEEECCcccCCCCHHHHHHhcC---cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccC
Confidence 88889999999999974 46899999999997 78899999999 5899873 268899999999999999999863
Q ss_pred c-cccc----cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 173 N-AQVG----LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 173 ~-~~~~----~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. .... +.. ++..+-.|++.+..|+|+.| |.|+|++++++++++.+
T Consensus 231 ~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~----G~RiG~~v~~~~l~~~l 281 (413)
T PLN00175 231 KLAFEGDHISMASLPGMYERTVTMNSLGKTFSLT----GWKIGWAIAPPHLTWGV 281 (413)
T ss_pred ccccCCcccChhhCCCCcCcEEEEecchhhccCc----chheeeeEeCHHHHHHH
Confidence 1 1111 101 11122346677777877655 89999999998776655
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=152.99 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
...++++.++++.|.+. .+...+|+.|+.+++.++. +++|+||++++.|+.... .+...|++++.++
T Consensus 64 ~~~~le~~lA~l~g~~~-al~~~SG~~Ai~~al~all--------~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd 134 (427)
T PRK05994 64 TNAVLEERVAALEGGTA-ALAVASGHAAQFLVFHTLL--------QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWAD 134 (427)
T ss_pred cHHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEEC
Confidence 46789999999999887 4567888887766665553 689999999998876533 3567899999988
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|-++|+|++
T Consensus 135 ~-----~d~~~l~~ai~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~a~a~~~--~~~pl~~gaDiv 203 (427)
T PRK05994 135 A-----DDPASFERAIT---PRTKAIFIESIANPGGTVT-DIAAIAEVAHRAGLPLIVDNTLASPY--LIRPIEHGADIV 203 (427)
T ss_pred C-----CCHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCccccc--cCCccccCCcEE
Confidence 5 38999999998 78999999998 6899998 89999999999999999999875433 346778999999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEE
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
+.|+||+++.+ ||+-.|+++.
T Consensus 204 v~S~tK~lgg~---~~~~gG~v~~ 224 (427)
T PRK05994 204 VHSLTKFLGGH---GNSMGGIIVD 224 (427)
T ss_pred EEcCccccCCC---CCcEEEEEEe
Confidence 99999999854 3444565553
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=154.05 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~ 110 (302)
...++++.+++++|.+. .+...+|+.|..+++.++. ++||+|+++++.|+.+... ....|+++..++
T Consensus 62 t~~~Le~~lA~l~G~~~-al~~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~ 132 (386)
T PRK06767 62 TVKLFEERMAVLEGGEE-ALAFGSGMAAISATLIGFL--------KAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCD 132 (386)
T ss_pred chHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeC
Confidence 46889999999999875 4556778776645544443 6899999999988765443 234577776665
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|+++++++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|+++... ....|...|+|++
T Consensus 133 ~-----~d~~~l~~~i~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~g~~vivD~a~a~~--~~~~pl~~g~Div 201 (386)
T PRK06767 133 M-----ETEADIENKIR---PNTKLIFVETPINPTMKLI-DLKQVIRVAKRNGLLVIVDNTFCSP--YLQRPLELGCDAV 201 (386)
T ss_pred C-----CCHHHHHHhhC---cCceEEEEeCCCCCCceec-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCcEE
Confidence 4 48999999997 78999999999 5899998 8999999999999999999986432 2335667899999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+.+++|+|+.+ |++.+|+++++++++.+
T Consensus 202 ~~S~sK~l~g~---g~~~gG~v~~~~~~i~~ 229 (386)
T PRK06767 202 VHSATKYIGGH---GDVVAGVTICKTRALAE 229 (386)
T ss_pred EecCcceecCC---CCceeEEEEeChHHHHH
Confidence 99999999743 22336999998776544
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=151.58 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
.-..++++.++++.|.+.+ +...+|..|..++++++. ++||+|+++++.|+..... ....|++++.+
T Consensus 53 pt~~~Le~~lA~leg~e~i-vvt~gg~~Ai~~~l~all--------~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~v 123 (388)
T PRK08861 53 PNRGLLEQTLSELESGKGA-VVTNCGTSALNLWVSALL--------GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFV 123 (388)
T ss_pred chHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHHc--------CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEE
Confidence 4578899999999997654 344556666645555443 6899999999988754332 23457888887
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...|.++|+|+
T Consensus 124 d~-----~d~e~l~~~i~---~~tklV~lesP~NPtG~v~-dl~~I~~la~~~gi~vIvDea~~~~~--~~~pl~~GaDi 192 (388)
T PRK08861 124 DQ-----SDAAALDAALA---KKPKLILLETPSNPLVRVV-DIAELCQKAKAVGALVAVDNTFLTPV--LQKPLELGADF 192 (388)
T ss_pred CC-----CCHHHHHHhcC---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCccccc--cCCCcccCCCE
Confidence 63 58999999998 78999999999 5899999 89999999999999999999874333 34677889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
++.|+||+++.|. +-..|++++++ ++.+++
T Consensus 193 vv~S~tK~l~G~~---d~~gG~i~~~~~~~~~~~ 223 (388)
T PRK08861 193 VIHSTTKYINGHS---DVIGGVLITKTKEHAEEL 223 (388)
T ss_pred EEeecceeccCCC---cceeEEEEecHHHHHHHH
Confidence 9999999998431 22368887763 444433
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=147.80 Aligned_cols=172 Identities=20% Similarity=0.265 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 36 IGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
..++++.+++.+| .+..++..+.|+...+.. .++.+. .+||.|+++.+.|+.|..+++..|.+++.+|.++
T Consensus 59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~--l~~~~~-----~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~- 130 (356)
T COG0079 59 YRELRAALAEYYGVVDPENVLVGNGSDELIEL--LVRAFV-----EPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE- 130 (356)
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCChHHHHHH--HHHHhh-----cCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc-
Confidence 3577888999999 777788888998643222 223332 6789999999999999999999999999999977
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHh--CCEEEEecCCccccccc--CCCCccCCcEE
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGL--CRPGDYGSDVS 189 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~--~~p~~~gaDiv 189 (302)
...|++.+.+.++ +++++|+++||| |||... +.++|.+++... ++++++|+|+. -+..- .......-+++
T Consensus 131 ~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG~~~-~~~~l~~l~~~~~~~~~vVvDEAY~-eF~~~~~~~l~~~~~nli 205 (356)
T COG0079 131 FRLDLDAILAAIR---DKTKLVFLCNPNNPTGTLL-PREELRALLEALPEGGLVVIDEAYI-EFSPESSLELLKYPPNLI 205 (356)
T ss_pred cccCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchh-hcCCchhhhhccCCCCEE
Confidence 8899999999998 688999999995 999886 466666666543 78999999863 11110 01111233577
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+. +||++.+|+.|-|+||.+.++++++.+..
T Consensus 206 vl---RTfSKa~gLAGlRlGy~ia~~~~i~~l~~ 236 (356)
T COG0079 206 VL---RTFSKAFGLAGLRVGYAIANPELIAALNK 236 (356)
T ss_pred EE---EecHHhhhcchhceeeccCCHHHHHHHHH
Confidence 76 68888888999999999999888776643
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=150.29 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
..++++.+++.+|++..++..++|++ +. .+++..+. +++|+|++++|.|+.+...++..|.+++.+|.+++
T Consensus 80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai---~~~~~~l~-----~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~ 151 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADHVMAYAGSSEPL---NYAVLAFT-----SPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRAD 151 (370)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCChHHHH---HHHHHHHc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCC
Confidence 56788889999999888888887874 33 23333332 67899999999998888888999999999999877
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccccccCCCC---ccCCcE
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQVGLCRPG---DYGSDV 188 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~~~~~~p~---~~gaDi 188 (302)
+.+|++++++. . +++++|+++|| |++|.+. +.+++.++++. +++++|+|+++. .+....+.. +...++
T Consensus 152 ~~~d~~~l~~~-~---~~~~~v~l~nP~NPTG~~~-~~~~l~~l~~~~~~~~~lIvDEaY~-~f~~~~s~~~~~~~~~~v 225 (370)
T PRK09105 152 GAHDVKAMLAA-D---PNAGLIYICNPNNPTGTVT-PRADIEWLLANKPAGSVLLVDEAYI-HFSDAPSVVDLVAQRKDL 225 (370)
T ss_pred CCCCHHHHHhc-C---CCCCEEEEeCCCCCCCcCc-CHHHHHHHHHhCCCCcEEEEECchH-HhccCcchHHHHhhCCCE
Confidence 88999999876 3 56888999999 5999987 57777777653 489999999872 111111111 123465
Q ss_pred EEe-CCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHL-NLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~-~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++. +.+|+|+. .|.|+|++++++++++.+
T Consensus 226 i~~~SfSK~~g~----~GlRiG~~v~~~~~i~~l 255 (370)
T PRK09105 226 IVLRTFSKLYGM----AGMRLGLAAARPDLLAKL 255 (370)
T ss_pred EEEecccHhhcC----CccceeeeecCHHHHHHH
Confidence 555 45566654 489999999988766654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-17 Score=155.58 Aligned_cols=170 Identities=21% Similarity=0.227 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc------HHHHHhCCCEEE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN------PASAQMAGMSVE 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~------~~~~~~~g~~v~ 107 (302)
+...++++.+++++|.+.+.+ +++|+.|+..++.+ + .++|+|++++..|..+ +...+..|++++
T Consensus 122 ~r~~~le~~lA~l~gae~alv-v~sg~aAi~l~l~~---l------~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~ 191 (454)
T TIGR00474 122 SRYSHVEGLLCELTGAEDALV-VNNNAAAVLLALNT---L------AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLV 191 (454)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-ECCHHHHHHHHHHH---h------CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEE
Confidence 346889999999999987644 66787665333322 2 5789999998775322 234567899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C--cee--ccccHHHHHHHHHHhCCEEEEecCCcc-------cc
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T--FGV--FEENITDVCELIHEHGGQVYLDGANMN-------AQ 175 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~--~G~--~~~di~~I~~ia~~~g~llivD~a~~~-------~~ 175 (302)
+++.+ ...|+++++++++ ++|++|++.+++ + .|. +. |+++|+++||++|+++++|.+.-. +.
T Consensus 192 ~v~~~--~~~~l~dle~aI~---~~T~lv~~~h~sN~~~~G~~~~~-dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl 265 (454)
T TIGR00474 192 EVGTT--NRTHLKDYEDAIT---ENTALLLKVHTSNYRIVGFTEEV-SIAELVALGREHGLPVMEDLGSGSLVDLSRYGL 265 (454)
T ss_pred EeCCC--CCCCHHHHHHhcC---cCCEEEEEEccCcccccCCCCCC-CHHHHHHHHHHcCCeEEEECCCcccccchhccC
Confidence 98763 4578999999998 889999998874 3 353 55 899999999999999999964210 00
Q ss_pred cc---cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 176 VG---LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 176 ~~---~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
.. +..+.++|+|++++|+||+|+ ||..|++++++++++++....
T Consensus 266 ~~~p~~~~~~~~GaDiv~fSg~K~Lg------Gp~~G~i~g~~~~i~~l~~~~ 312 (454)
T TIGR00474 266 PDEPTVQEVIAAGVDLVTFSGDKLLG------GPQAGIIVGKKELIERLKKNP 312 (454)
T ss_pred CCCcccccHhHcCCCEEEecCccccC------CCeEEEEEECHHHHHhhhhch
Confidence 00 124557899999999999986 678899999988877765443
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=151.13 Aligned_cols=164 Identities=17% Similarity=0.157 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....+++++++++.|.+.+ +..+||+.|..+++ ++. ++||+|+++++.|+.... .+...|++++.+
T Consensus 50 p~~~~Le~~la~l~g~~~a-l~~~SG~~Al~~~l-~~l--------~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~v 119 (380)
T PRK06176 50 PTRFALEELIADLEGGVKG-FAFASGLAGIHAVF-SLF--------QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTII 119 (380)
T ss_pred hhHHHHHHHHHHHhCCCCE-EEECCHHHHHHHHH-HHc--------CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEc
Confidence 5588999999999998876 55688887663322 222 689999999998765432 345678898888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|..+++|+
T Consensus 120 d~-----~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~-di~~I~~la~~~gi~vivD~t~a~~--~~~~p~~~gaDi 188 (380)
T PRK06176 120 DT-----SDLSQIKKAIK---PNTKALYLETPSNPLLKIT-DLAQCASVAKDHGLLTIVDNTFATP--YYQNPLLLGADI 188 (380)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEECCcccc--ccCCccccCCCE
Confidence 75 38999999998 78999999999 5899998 8999999999999999999886432 234567889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|++|+++.| +..-.|+++++ +++.+++
T Consensus 189 vv~S~tK~l~g~---~d~~gG~vv~~~~~~~~~~ 219 (380)
T PRK06176 189 VVHSGTKYLGGH---SDVVAGLVTTNNEALAQEI 219 (380)
T ss_pred EEecCceeccCC---ccceeeEEEecHHHHHHHH
Confidence 999999999844 11236878876 3444443
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=147.99 Aligned_cols=244 Identities=17% Similarity=0.168 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR- 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~- 112 (302)
..+.++++.+++.+|.+.+ +.++||+.|..+++.++. .++||+|++|...+..........|+++++++++
T Consensus 25 ~~~~~fE~~~a~~~g~~~~-~~~~sgt~Al~~al~~l~-------~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~ 96 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKYA-VAVSSGTSALHLALRALG-------LGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDP 96 (363)
T ss_dssp HHHHHHHHHHHHHHTSSEE-EEESSHHHHHHHHHHHTT-------GGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BET
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCChhHHHHHHHHhcC-------CCcCceEecCCCcchHHHHHHHHhccEEEEEeccC
Confidence 5789999999999998886 456889887766666532 2589999999998887778888999999999998
Q ss_pred CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 113 KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 113 ~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
+++.+|+++++++++ ++|++|++++ .+|... |+++|.++|+++|+++|-|++|..+.-.- ...|.+| |+.++
T Consensus 97 ~~~~id~~~~~~~i~---~~t~ai~~~h--~~G~~~-d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~g-d~~~f 169 (363)
T PF01041_consen 97 ETLNIDPEALEKAIT---PKTKAILVVH--LFGNPA-DMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFG-DIAIF 169 (363)
T ss_dssp TTSSB-HHHHHHHHH---TTEEEEEEE---GGGB----HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSS-SEEEE
T ss_pred CcCCcCHHHHHHHhc---cCccEEEEec--CCCCcc-cHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCC-CceEe
Confidence 478999999999999 8999999987 678888 89999999999999999999986543211 3457776 99999
Q ss_pred CCC--cccCCCCCCCCCcceeEEEeC-CCCCCC---C--CCc-------cc----CCCCcchhhhHHHHhhHh------h
Q psy7357 192 NLH--KTFCIPHGGGGPGMGPIGVKS-HLAPFL---P--VHP-------LS----SIDSSIGAVSAAHYGSAS------I 246 (302)
Q Consensus 192 ~~h--K~l~~p~~~gGp~~G~l~~~~-~l~~~l---p--g~~-------~~----~~~~~l~~~~a~~~~~~~------~ 246 (302)
|+| |.+. ...+|++++++ ++.+++ . |+- .. ..|.-+..+.|++-..-+ +
T Consensus 170 Sf~~~K~i~------~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~ 243 (363)
T PF01041_consen 170 SFHPTKIIT------TGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEII 243 (363)
T ss_dssp ESSTTSSS-------SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHH
T ss_pred cCCCCCCCc------CCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhH
Confidence 976 4442 22458999985 433333 1 111 00 134556666665555432 1
Q ss_pred HH---HHHHHHHHHh--cccccccccCCCc-ceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 247 LP---ISWAYIRRLE--SHYKTLFRSSRSG-LVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 247 ~~---~~~~y~~~l~--~g~~~~~~~~~~~-~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
.. .+..|.+.|. +++..+...+... ...|.|.+.+++.. ..+-+++.++|.+
T Consensus 244 ~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~---~~~rd~l~~~L~~ 301 (363)
T PF01041_consen 244 ARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA---LADRDELVEALRA 301 (363)
T ss_dssp HHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG---CSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc---cchHHHHHHHHHH
Confidence 11 1113444665 4554433222201 35788888888421 1356778777753
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=152.63 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|+.|..+++.++. ++||+|+++++.|+.... .++..|++++.+
T Consensus 64 p~~~~Le~~lA~leg~~~a-l~~~sG~~Ai~~al~~ll--------~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~v 134 (431)
T PRK08248 64 PTTDVFEKRIAALEGGIGA-LAVSSGQAAITYSILNIA--------SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFV 134 (431)
T ss_pred chHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEE
Confidence 3577899999999997764 456788877655555543 689999999998865432 356789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.++|+|+
T Consensus 135 d~-----~d~e~l~~ai~---~~tklV~l~sp~NPtG~v~-di~~I~~la~~~gi~vIvD~t~a~~--~~~~pl~~gaDi 203 (431)
T PRK08248 135 DP-----SDPENFEAAIT---DKTKALFAETIGNPKGDVL-DIEAVAAIAHEHGIPLIVDNTFASP--YLLRPIEHGADI 203 (431)
T ss_pred CC-----CCHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEeCCCCcc--ccCChhHcCCCE
Confidence 86 38999999998 78999999998 6999999 8999999999999999999986422 234566899999
Q ss_pred EEeCCCcccCCC
Q psy7357 189 SHLNLHKTFCIP 200 (302)
Q Consensus 189 v~~~~hK~l~~p 200 (302)
++.++||+++.|
T Consensus 204 vv~S~tK~lgg~ 215 (431)
T PRK08248 204 VVHSATKFIGGH 215 (431)
T ss_pred EEEcCccccCCC
Confidence 999999999844
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-17 Score=154.05 Aligned_cols=184 Identities=18% Similarity=0.211 Sum_probs=132.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
..|.+ .+|..++++++.+.+.+.+|.+ .. .+..++|+ ++...++.++ + +++|+|++++|.|+.+.
T Consensus 67 ~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~---~-----~~gd~Vlv~~P~y~~~~ 135 (394)
T PRK05942 67 HGYPP---FEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAY---V-----NPGDVVLVPSPAYPAHF 135 (394)
T ss_pred ccCCC---CCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHh---C-----CCCCEEEEcCCCCcchH
Confidence 34544 5788888888888888777753 33 36666676 4442332222 2 68999999999998887
Q ss_pred HHHHhCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~ 171 (302)
..+...|.+++.+|++.+ +.+|++++++.++ +++++|+++|| |+||.+.+ ++++|.++|+++|+++|+|.++
T Consensus 136 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y 212 (394)
T PRK05942 136 RGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCY 212 (394)
T ss_pred HHHHHcCCEEEEeecCCccCCccCHHHHHHhcc---ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccc
Confidence 777889999999999753 3699999999997 78999999999 59998741 4889999999999999999986
Q ss_pred cccc-c-----ccCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 172 MNAQ-V-----GLCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 172 ~~~~-~-----~~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..-. . .+.. +......|.+.+..|.|+.| |.|+|++++++++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~----GlRiG~i~~~~~l~~~l~ 266 (394)
T PRK05942 213 AELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMA----GWRVGFVVGNRHIIQGLR 266 (394)
T ss_pred hhhccCCCCCCChhhCCCccccEEEEecchhccCCh----hhheeeeecCHHHHHHHH
Confidence 3111 0 1100 11112346667777777644 889999999887776654
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-16 Score=145.93 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=132.3
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..+++.++.+.+.+..|. +..++..++|+ ++...++.++. +++|.|+++++.|+.+...++..|.+
T Consensus 67 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 138 (393)
T PRK05764 67 AAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL--------DPGDEVIIPAPYWVSYPEMVKLAGGV 138 (393)
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc--------CCCCEEEecCCCCcchHHHHHHcCCE
Confidence 468777777777777766664 33455556665 55534433332 57899999999998888888889999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-ccc--
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVG-- 177 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~-- 177 (302)
++.+|.+++ ..+|++++++.++ +++++|++++| |++|.+. +++++|.++|+++|+++++|.++... ..+
T Consensus 139 ~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 215 (393)
T PRK05764 139 PVFVPTGEENGFKLTVEQLEAAIT---PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAE 215 (393)
T ss_pred EEEEecCcccCCcCCHHHHHHhhC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCC
Confidence 999999743 4689999999997 78899999999 5899873 26999999999999999999876311 111
Q ss_pred ---cC--CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 ---LC--RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ---~~--~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.. .++..+.++++.+.+|+++.| |.++|+++.++++.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~i~~~~~~~~~~~ 261 (393)
T PRK05764 216 FTSIASLSPELRDRTITVNGFSKAYAMT----GWRLGYAAGPKELIKAMS 261 (393)
T ss_pred cccHHHcCCCCcCCEEEEecCcccccCc----cceeEEEecCHHHHHHHH
Confidence 00 022234568888888888755 789999999887776654
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=145.19 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC-CCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH-HRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~-~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
...++++.+++++|.+.. +...+|+.++.+++.++. . +||+|+++++.|..... .+...|.+++.+|
T Consensus 41 ~~~~l~~~la~~~~~~~~-~~~~~Gs~a~~~~l~~~~--------~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 111 (353)
T PLN02721 41 TALRLEEEMAKIFGKEAA-LFVPSGTMGNLISVLVHC--------DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVK 111 (353)
T ss_pred HHHHHHHHHHHHhCCcee-EEecCccHHHHHHHHHHc--------cCCCCeEEEcCccceehhcccchhhhcCceeEecC
Confidence 368899999999998864 455677766544444432 4 78999999998743332 4667899999999
Q ss_pred cCCCCCCCHHHHHHHHhcc----CCCeEEEEEecC-C-Cceeccc--cHHHHHHHHHHhCCEEEEecCCcccc---cccC
Q psy7357 111 VRKDGTIDFSDLETKVKKN----KETLSCLMITYP-S-TFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ---VGLC 179 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~P-n-~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~---~~~~ 179 (302)
.++++.+|++++++.++++ .+++++|+++++ | ++|.+.+ ++++|.++|+++|+++++|+++.... ...
T Consensus 112 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~- 190 (353)
T PLN02721 112 NNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV- 190 (353)
T ss_pred CCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-
Confidence 8888899999999999742 147889999884 3 6787641 48999999999999999999864321 111
Q ss_pred CCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 180 RPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 180 ~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++. ..++|.++.++||+|+ ||.+|+++.++++++.
T Consensus 191 ~~~~~~~~~d~~~~s~sK~l~------~~~G~~~~~~~~~~~~ 227 (353)
T PLN02721 191 PVHRLVKAADSVSVCLSKGLG------APVGSVIVGSKSFIRK 227 (353)
T ss_pred CHHHHhhhCCEEEEecccccC------CceeeEEecCHHHHHh
Confidence 222 2368988888999886 3433456667766554
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-17 Score=155.82 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH-----HhCCCEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA-----QMAGMSV 106 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~-----~~~g~~v 106 (302)
......++++++++++|.+.+. ...+|..|+.+++.++. ++||+|+++++.|+.+.... +..|.++
T Consensus 74 ~~Pt~~~LE~~lA~l~g~~~~l-~~~sG~~Ai~~al~al~--------~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~ 144 (418)
T PLN02242 74 FNPTVLNLGRQMAALEGTEAAY-CTASGMSAISSVLLQLC--------SSGGHVVASNTLYGGTHALLAHFLPRKCNITT 144 (418)
T ss_pred CChhHHHHHHHHHHHhCCCeEE-EEccHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHhhhhccCceE
Confidence 3467889999999999998875 45678777756655554 68999999999887665433 3478888
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
+.++. .|+++++++++ + ++++|++++| |++|.+. |+++|+++||++|+++++|.++. .. ..+|..+
T Consensus 145 ~~~d~-----~d~e~l~~~i~---~~~tklV~lesp~NPtG~v~-dl~~I~~la~~~gi~livDea~~--~~-~~~~~~~ 212 (418)
T PLN02242 145 TFVDI-----TDLEAVKKAVV---PGKTKVLYFESISNPTLTVA-DIPELARIAHEKGVTVVVDNTFA--PM-VLSPARL 212 (418)
T ss_pred EEcCC-----CCHHHHHHhcC---cCCCEEEEEecCCCCCCccc-CHHHHHHHHHHhCCEEEEECCCC--cc-CCCHHHc
Confidence 77765 38999999997 6 5999999999 6899998 89999999999999999998863 22 2356667
Q ss_pred CCcEEEeCCCcccCCCCCCCCCc-ceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~~lp 222 (302)
|+||++.+++|+|+.+ |.. +|++++++++++.+.
T Consensus 213 g~divv~S~SK~l~g~----g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 213 GADVVVHSISKFISGG----ADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred CCcEEEEeCccccCCC----CCceEEEEEcCHHHHHHHH
Confidence 8999999999988743 443 699998877665543
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=151.73 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=130.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..|.....+++++.+++++|++. .+.+++|++++.+++.++. ++||+|+++++.|+.....++..|.+++.
T Consensus 41 ~~~~~~~~~~l~~~la~~~~~~~-~iv~~sg~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~ 111 (349)
T cd06454 41 ISGTSDLHEELEEELAEFHGKEA-ALVFSSGYAANDGVLSTLA--------GKGDLIISDSLNHASIIDGIRLSGAKKRI 111 (349)
T ss_pred ecCCchHHHHHHHHHHHHhCCCC-EEEeccHHHHHHHHHHHhc--------CCCCEEEEehhhhHHHHHHHHHcCCceEE
Confidence 45777888999999999999875 4667778776655554443 57899999999988777677788999988
Q ss_pred eecCCCCCCCHHHHHHHHhccC--CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-------
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNK--ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL------- 178 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~--~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~------- 178 (302)
++. +|++++++++++.. +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+....
T Consensus 112 ~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~ 185 (349)
T cd06454 112 FKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA-PLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE 185 (349)
T ss_pred ecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc-CHHHHHHHHHHcCCEEEEEccccccccCCCCCChhh
Confidence 763 58899999997532 46788888887 5899998 79999999999999999999975332211
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
......+.|+++.++||+|+. .+|+++.++++.+.+
T Consensus 186 ~~~~~~~~~i~~~s~sK~~~~-------~gG~i~~~~~~~~~~ 221 (349)
T cd06454 186 FGGLTDDVDIIMGTLGKAFGA-------VGGYIAGSKELIDYL 221 (349)
T ss_pred hccccccCcEEEeechhhhcc-------cCCEEECCHHHHHHH
Confidence 112345789999999999863 237888887765544
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-17 Score=153.72 Aligned_cols=175 Identities=15% Similarity=0.205 Sum_probs=124.6
Q ss_pred cccHHHHHHHHHHHHHHHh-CCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 29 ARGYEQLIGELETDLCEIT-GYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~-g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
++|.. ++++.+++++ +.+..++..++|+ +|+..++.++. ++||+|+++.|.|+.+...++..|+++
T Consensus 61 ~~G~~----~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~g~~v 128 (373)
T PRK07324 61 IEGSP----EFKEAVASLYQNVKPENILQTNGATGANFLVLYALV--------EPGDHVISVYPTYQQLYDIPESLGAEV 128 (373)
T ss_pred CCCCH----HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 46765 4555566655 3555566666665 55544444332 689999999999888888888999999
Q ss_pred EEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-cC
Q psy7357 107 EPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG-LC 179 (302)
Q Consensus 107 ~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~-~~ 179 (302)
+.+|.+++ ..+|++++++.++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|.++.- .... ..
T Consensus 129 ~~v~~~~~~~~~~d~~~l~~~~~---~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~ 205 (373)
T PRK07324 129 DYWQLKEENGWLPDLDELRRLVR---PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTP 205 (373)
T ss_pred EEEecccccCCCCCHHHHHHhCC---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCC
Confidence 99999753 3589999999887 78899999999 59998751 389999999999999999998621 1111 11
Q ss_pred CCCcc-CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 180 RPGDY-GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 180 ~p~~~-gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.... .-.|++.+.+|+|+.| |+|+|++++++++++.+.
T Consensus 206 s~~~~~~~~I~~~s~SK~~~~~----G~RiG~i~~~~~li~~~~ 245 (373)
T PRK07324 206 SIADLYEKGISTNSMSKTYSLP----GIRVGWIAANEEVIDILR 245 (373)
T ss_pred ChhhccCCEEEEecchhhcCCc----cceeEEEecCHHHHHHHH
Confidence 11111 1236666777777654 899999999877766553
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=150.45 Aligned_cols=165 Identities=18% Similarity=0.112 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|+.|+.++++++. ++||+||++++.|+.+.. .+...|++++.+
T Consensus 65 pt~~~Le~~lA~l~g~~~~-l~~~sgt~Ai~~~l~al~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~v 135 (394)
T PRK07050 65 PTSLALAQRLAEIEGGRHA-LLQPSGLAAISLVYFGLV--------KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFY 135 (394)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeccHHHHHHHHHHHHh--------CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEE
Confidence 3468999999999998754 345667776655555553 689999999999987653 356779999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.. |.++++++++ ++|++|++++| |++|... |+++|+++||++|+++++|+++..+ ...+|.+.|+|+
T Consensus 136 d~~-----~~~~l~~~i~---~~tklV~le~p~Np~~~~~-di~~I~~ia~~~gi~livD~a~a~~--~~~~~l~~GaDi 204 (394)
T PRK07050 136 DPL-----IGAGIADLIQ---PNTRLIWLEAPGSVTMEVP-DVPAITAAARARGVVTAIDNTYSAG--LAFKPFEHGVDI 204 (394)
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCccHh-hHHHHHHHHHHcCCEEEEECCcccc--cccCHHHcCCeE
Confidence 742 5578999987 88999999999 5888888 8999999999999999999986443 335677889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.+.+|++++. ++..+|.++++ +++.+++
T Consensus 205 ~v~S~tK~~~g~---~~~~gG~v~~~~~~~~~~~ 235 (394)
T PRK07050 205 SVQALTKYQSGG---SDVLMGATITADAELHAKL 235 (394)
T ss_pred EEEECCceecCC---CCeeEEEEEECCHHHHHHH
Confidence 999999999742 23346766665 5665554
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=154.29 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=136.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+.|.+ .+|..++++++++++.+++|.+. .++..++|+ ++...++.++. +++|+|+++++.|+.+.
T Consensus 61 ~~Y~~---~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~Vli~~p~y~~~~ 129 (386)
T PRK09082 61 NQYPP---MTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV--------RPGDEVIVFDPSYDSYA 129 (386)
T ss_pred CCCCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc--------CCCCEEEEeCCCchhhH
Confidence 44554 58999999999999999999753 245555554 55544443332 68899999999998888
Q ss_pred HHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec---cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF---EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~---~~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|.+++.+|.++ ++.+|++++++.++ +++++|++++| |++|.. + ++++|.++|+++|+++|+|.++
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~-~~~~i~~~a~~~~i~li~De~y 205 (386)
T PRK09082 130 PAIELAGGRAVRVALQPPDFRVDWQRFAAAIS---PRTRLIILNTPHNPSGTVWSAA-DMRALWQLIAGTDIYVLSDEVY 205 (386)
T ss_pred HHHHHcCCEEEEEecCcccccCCHHHHHHhcC---ccceEEEEeCCCCCCCcCCCHH-HHHHHHHHHHHCCEEEEEehhh
Confidence 88888999999999974 56899999999997 78899999998 699976 5 7999999999999999999986
Q ss_pred cc-cccc--cCC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 MN-AQVG--LCR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~-~~~~--~~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. .... ..+ ++...-.+++.+.+|+|+.| |.|+|++++++++++.+
T Consensus 206 ~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~iv~~~~l~~~~ 258 (386)
T PRK09082 206 EHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT----GWKVGYCVAPAALSAEF 258 (386)
T ss_pred hhhccCCCCCCChhhCcCccCcEEEEeechhhccch----hhhhhhhhCCHHHHHHH
Confidence 31 1111 111 11122346777777777654 89999999988776554
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=150.18 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCCeeeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++++|++..++.. ++|++.. ...+++.+. +++|+|+++++.|+.+...++..|++++.+|.+.++
T Consensus 72 ~~lr~~ia~~~~~~~~~i~~~~~Ga~~~--i~~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 144 (361)
T PRK00950 72 PELREALSKYTGVPVENIIVGGDGMDEV--IDTLMRTFI-----DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDF 144 (361)
T ss_pred HHHHHHHHHHhCCCHHHEEEeCCCHHHH--HHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 67888999999998766666 6777432 112222221 578999999998776666778889999999977777
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-cCCC-CccCCcEEEeC
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-LCRP-GDYGSDVSHLN 192 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~~~p-~~~gaDiv~~~ 192 (302)
.+|++++++.++ +++++|++++| |++|.+. +.+++.++|+++|+++++|+++..-... .... ....--+++.+
T Consensus 145 ~~~~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S 220 (361)
T PRK00950 145 SLDVDSVLNAIT---EKTKVIFLCTPNNPTGNLI-PEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRT 220 (361)
T ss_pred CcCHHHHHHHhc---cCCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEe
Confidence 899999999987 67888999999 5899998 7999999999999999999987311110 0000 11111255566
Q ss_pred CCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+|+|+.| |.|+|++.+++++++.+
T Consensus 221 ~SK~~g~~----GlRiG~~~~~~~~~~~~ 245 (361)
T PRK00950 221 FSKVFGLA----GLRIGYGFVPEWLIDYY 245 (361)
T ss_pred ehHhhcCc----hhhcchhcCCHHHHHHH
Confidence 67777654 78999999987766543
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-17 Score=153.13 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....+++++++++.|.+.+ +.+.+|..|..+++.++. ++||+|+++++.|+.... .+...|++++.+
T Consensus 64 p~~~~le~~lA~l~g~~~~-i~~ssG~~Ai~~~l~all--------~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~v 134 (398)
T PRK08249 64 PTVQAFEEKVRILEGAEAA-TAFSTGMAAISNTLYTFL--------KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLC 134 (398)
T ss_pred hHHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEc
Confidence 5678999999999998765 556778776644544443 689999999999876532 345678888877
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|..+++|+
T Consensus 135 d~-----~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~-dl~~I~~la~~~gi~livD~t~a~~~--~~~~l~~~~Di 203 (398)
T PRK08249 135 ET-----GDHEQIEAEIA---KGCDLLYLETPTNPTLKIV-DIERLAAAAKKVGALVVVDNTFATPI--NQNPLALGADL 203 (398)
T ss_pred CC-----CCHHHHHHhcC---CCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCcCccc--cCCchhhCCCE
Confidence 63 58999999998 78999999999 5899998 89999999999999999999864322 23455678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.|++|+++.+ |....|+++.++++++++
T Consensus 204 vv~S~sK~l~g~---~~~~gG~vv~~~~l~~~l 233 (398)
T PRK08249 204 VIHSATKFLSGH---ADALGGVVCGSKELMEQV 233 (398)
T ss_pred EeccCceecCCC---CCceEEEEECCHHHHHHH
Confidence 999999998733 111247777777666554
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-17 Score=152.21 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=133.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.+ .. ++..++|+ ++..+++.++. +++|+|+++++.|+.+...++..|.
T Consensus 62 ~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~g~ 133 (387)
T PRK08912 62 MMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV--------EPGDEVVLFQPLYDAYLPLIRRAGG 133 (387)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCC
Confidence 5888889988888888877753 33 56666665 44423333322 5789999999999888888899999
Q ss_pred EEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccc---
Q psy7357 105 SVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQV--- 176 (302)
Q Consensus 105 ~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~--- 176 (302)
+++.+|+++ ++.+|++++++.++ +++++|++++| |+||.+. +++++|.++|+++++++|+|.++.. ...
T Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 210 (387)
T PRK08912 134 VPRLVRLEPPHWRLPRAALAAAFS---PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRR 210 (387)
T ss_pred EEEEEecCcccCcCCHHHHHHHhC---ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCC
Confidence 999999865 56899999999987 78899999999 5999874 1588899999999999999998631 111
Q ss_pred --ccCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 177 --GLCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 177 --~~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.. ++..+-++++.+.+|.|+.| |.|+|++++++++++.+
T Consensus 211 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~l 254 (387)
T PRK08912 211 HIPLMTLPGMRERTVKIGSAGKIFSLT----GWKVGFVCAAPPLLRVL 254 (387)
T ss_pred CcChhhCCCccCceEEEeechhhccCc----CceeEEEecCHHHHHHH
Confidence 0111 11123468888888888755 89999999988766654
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=151.91 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
...++++++++++.|.+.+ +..++|..+. +.+.++. ++||+||++++.|+.+.. .....|++++.+
T Consensus 133 pt~~aLE~~lA~leg~e~a-i~~~SG~aAi-~~il~ll--------~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~v 202 (464)
T PLN02509 133 PTRDALESLLAKLDKADRA-FCFTSGMAAL-SAVTHLI--------KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 202 (464)
T ss_pred HHHHHHHHHHHHHhCCCEE-EEeCcHHHHH-HHHHHHh--------CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEe
Confidence 4689999999999998765 4456676544 3333322 689999999999887653 345679998888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|..+++|+
T Consensus 203 d~-----~d~e~l~~ai~---~~TklV~lesPsNPtG~i~-Dl~~I~~lAk~~g~~lIVD~A~a~~~--~~~pl~~gaDi 271 (464)
T PLN02509 203 NT-----TNLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKIAEMAHAQGALVLVDNSIMSPV--LSRPLELGADI 271 (464)
T ss_pred CC-----CCHHHHHHhCC---cCCeEEEEECCCCCCCCHH-HHHHHHHHHHHcCCEEEEECCccccc--cCChhhcCCcE
Confidence 64 47999999997 88999999999 5899998 89999999999999999999864443 34566789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
++.+.+|+++.+ |+...|+++++++
T Consensus 272 vv~S~tK~l~G~---gdv~gG~v~~~~~ 296 (464)
T PLN02509 272 VMHSATKFIAGH---SDVMAGVLAVKGE 296 (464)
T ss_pred EEecCcccccCC---CccceeEEEeccH
Confidence 999999998743 2344788988643
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=148.72 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.+|++..++.+++|++.. ...+++.+. ++||+|++++|.|+.+...++..|++++.+|.++++
T Consensus 88 ~~~lr~~ia~~~~~~~~~I~~t~Ga~~~--i~~~~~~~~-----~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~ 160 (380)
T PLN03026 88 SRRLRAALAEDSGLESENILVGCGADEL--IDLLMRCVL-----DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDF 160 (380)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCCHHHH--HHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 3578899999999988788888887522 122222221 578999999999887777788899999999987777
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cc-cc-cCCCCccCCcEEEe
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQ-VG-LCRPGDYGSDVSHL 191 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~-~~-~~~p~~~gaDiv~~ 191 (302)
.+|+++|++++.. +++++|++++| |++|.+. +.+++.++++.. +++++|.++.- .. .. ........-.|++.
T Consensus 161 ~~d~~~l~~~~~~--~~~~~v~l~~P~NPTG~~~-~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~ 236 (380)
T PLN03026 161 SLDVPRIVEAVET--HKPKLLFLTSPNNPDGSII-SDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLR 236 (380)
T ss_pred CcCHHHHHHHHhc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEe
Confidence 8999999999931 67899999999 5999998 799999999765 89999998631 10 00 00011122236666
Q ss_pred CCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+.+|.|+ +.|.|+||+++++++++.+
T Consensus 237 SfSK~~g----laGlRiGy~~~~~~~i~~l 262 (380)
T PLN03026 237 TFSKRAG----LAGLRVGYGAFPLSIIEYL 262 (380)
T ss_pred cchHhhc----CccccceeeecCHHHHHHH
Confidence 6666665 4599999999988776655
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=151.00 Aligned_cols=178 Identities=14% Similarity=0.122 Sum_probs=129.0
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+.+|. +..++..++|+ ++...++ ..++ +++|+|+++++.|+.+...+...|.+
T Consensus 68 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~---~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~ 139 (387)
T PRK08960 68 ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLAS---SLLV-----DPGKHWLLADPGYPCNRHFLRLVEGA 139 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHH---HHhc-----CCCCEEEEcCCCCcchHHHHHhcCCe
Confidence 578878888888887776664 44567777776 4432222 2222 68999999999999988888888999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.+|++++ +.+|++++++.++ ++++++++++| |++|... +++++|+++|+++|+++++|.++.. .... .
T Consensus 140 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~ 216 (387)
T PRK08960 140 AQLVPVGPDSRYQLTPALVERHWN---ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDA 216 (387)
T ss_pred EEEEecCcccCCCCCHHHHHHHhC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 999998764 3689999999987 67888999999 6999874 1477888889999999999998631 1111 1
Q ss_pred CCCCccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+......+ +++.|.+|.|+.| |.|+|++++++++++.+
T Consensus 217 ~~~~~~~~~vi~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~ 256 (387)
T PRK08960 217 ASVLEVDDDAFVLNSFSKYFGMT----GWRLGWLVAPPAAVPEL 256 (387)
T ss_pred CChhhccCCEEEEeecccccCCc----ccEEEEEEcCHHHHHHH
Confidence 111122234 4556667776644 89999999998776655
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-16 Score=149.15 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~~v~~i~ 110 (302)
....++++.+++++|.+.+ +...+|..|+.+++.++. ++||+|+++++.|+.+.... ...|++++.++
T Consensus 53 p~~~~lE~~lA~l~g~~~~-l~~~sG~~Ai~~~l~~ll--------~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~ 123 (385)
T PRK08574 53 PTLRPLEEALAKLEGGVDA-LAFNSGMAAISTLFFSLL--------KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY 123 (385)
T ss_pred ccHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC
Confidence 4578899999999998765 445778776655555543 68999999999998775544 45678877654
Q ss_pred cCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
.|+++++++++ + +|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ..+|.++|+|+
T Consensus 124 ------~d~~~l~~~i~---~~~tklV~ie~p~NPtG~v~-dl~~I~~la~~~gi~livD~t~a~~~--~~~~l~~GaDi 191 (385)
T PRK08574 124 ------PSTEDIIEAIK---EGRTKLVFIETMTNPTLKVI-DVPEVAKAAKELGAILVVDNTFATPL--LYRPLRHGADF 191 (385)
T ss_pred ------CCHHHHHHhcC---ccCceEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCccc--cCChhhhCCcE
Confidence 36899999997 5 8999999998 6899998 89999999999999999999864332 23466789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
++.|++|+|+.| |..-.|++++ ++++.+++
T Consensus 192 vv~S~sK~l~g~---~d~~gG~vi~~~~~~~~~~ 222 (385)
T PRK08574 192 VVHSLTKYIAGH---NDVVGGVAVAWSGEFLEEL 222 (385)
T ss_pred EEeeCceeecCC---CCceeEEEEECcHHHHHHH
Confidence 999999999743 1122575555 45555443
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=153.50 Aligned_cols=183 Identities=14% Similarity=0.172 Sum_probs=132.8
Q ss_pred cccccHHHHHHHHHHHHHHHhCC-C-------------eeeEeeCchHHHHHHHHHHHHHHHHh-hc-------------
Q psy7357 27 DQARGYEQLIGELETDLCEITGY-D-------------KISFQPNSGAQGEYAGLRAIQCYHQA-QD------------- 78 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~-~-------------~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g------------- 78 (302)
|.|....++-.++-.+++++++- + ..-+...+|+.|++.++.+.|..... .+
T Consensus 122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 56777878888889999999852 1 11344566778887777777654211 00
Q ss_pred ----CCCCCEEEEcCCCCcccHHHHHhCCC---EEEEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceec
Q psy7357 79 ----AHHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVF 147 (302)
Q Consensus 79 ----~~~~d~Vlv~~~~hg~~~~~~~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~ 147 (302)
..++..|++++.+|.+....+...|+ +++.||+|++|.+|+++|+++|++. +.++.+|+.+.. +.+|.+
T Consensus 202 ~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGai 281 (522)
T TIGR03799 202 LKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI 281 (522)
T ss_pred hhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCc
Confidence 01346799999999888888888887 8999999999999999999999632 223444554444 378999
Q ss_pred cccHHHHHHHHHHhCCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 148 EENITDVCELIHEHGGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 148 ~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+ |+++|+++|+++|++++||+|+..+..... -.+..++|.++++.||+|..|+ ++|++++++
T Consensus 282 D-pl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~-----g~G~llvr~ 348 (522)
T TIGR03799 282 D-PLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPM-----GAGMVLFKD 348 (522)
T ss_pred C-CHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCc-----ccEEEEEeC
Confidence 9 799999999999999999998743322111 0122478999999999998553 678898874
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-16 Score=150.18 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|..|+.+++.++. ++||+|++++..|+.... .+...|++++.+
T Consensus 69 p~~~~Le~~lA~l~g~~~a-v~~sSG~aAi~~al~all--------~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~v 139 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVAA-LLLASGQAAETFAILNLA--------GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFV 139 (436)
T ss_pred chHHHHHHHHHHHhCCCeE-EEEccHHHHHHHHHHHHh--------CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEE
Confidence 4567899999999999875 556788877756665553 689999999888875543 234578888888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+ +. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.++|+|+
T Consensus 140 d-d~---~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~-Dl~~I~~la~~~gi~liVD~t~a~~--~~~~pl~~GaDi 209 (436)
T PRK07812 140 E-DP---DDLDAWRAAVR---PNTKAFFAETISNPQIDVL-DIPGVAEVAHEAGVPLIVDNTIATP--YLIRPLEHGADI 209 (436)
T ss_pred C-CC---CCHHHHHHhCC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCCE
Confidence 5 22 38999999998 88999999998 5899999 8999999999999999999986433 234677889999
Q ss_pred EEeCCCcccCC
Q psy7357 189 SHLNLHKTFCI 199 (302)
Q Consensus 189 v~~~~hK~l~~ 199 (302)
++.|+||+++.
T Consensus 210 vv~S~tK~lgg 220 (436)
T PRK07812 210 VVHSATKYLGG 220 (436)
T ss_pred EEEecccccCC
Confidence 99999999973
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=146.80 Aligned_cols=180 Identities=22% Similarity=0.246 Sum_probs=132.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++..++++.+...++.. ..++ ...+|+.++.+++.++. +++++|+++++.|+++...++..|.+
T Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~~ 106 (350)
T cd00609 35 DPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL--------NPGDEVLVPDPTYPGYEAAARLAGAE 106 (350)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 4678788888888888776631 2233 34445555544444432 57899999999999998889999999
Q ss_pred EEEeecCCCCCCCH--HHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccccc-cc-
Q psy7357 106 VEPVSVRKDGTIDF--SDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQV-GL- 178 (302)
Q Consensus 106 v~~i~~~~~g~iD~--~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~-~~- 178 (302)
++.++.++++..+. +.+++.++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++..... ..
T Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~ 183 (350)
T cd00609 107 VVPVPLDEEGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEP 183 (350)
T ss_pred EEEEecccccCCccCHHHHHhhcC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcc
Confidence 99999987776665 66666665 78999999998 48898862 355555899999999999998742211 11
Q ss_pred ----CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCC
Q psy7357 179 ----CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPV 223 (302)
Q Consensus 179 ----~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg 223 (302)
..++..+.|+++.++||+|+. +|+++|++++++ ++.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~s~~K~~~~----~g~~~G~i~~~~~~~~~~~~~ 229 (350)
T cd00609 184 PPALALLDAYERVIVLRSFSKTFGL----PGLRIGYLIAPPEELLERLKK 229 (350)
T ss_pred cccccCcCccCcEEEEeecccccCC----cccceEEEecCHHHHHHHHHH
Confidence 224566789999999998873 378999999998 67776644
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=151.18 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+.+.+|. +..++..++|+ ++...++.++. +++|.|+++++.|..+...+...|.+
T Consensus 69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~~g~~Vlv~~p~y~~~~~~~~~~g~~ 140 (391)
T PRK08361 69 NAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL--------EEGDEVIIPDPAFVCYVEDAKIAEAK 140 (391)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCCcccHHHHHHcCCE
Confidence 478888888888888777764 34566666665 44433333332 67899999999998888888889999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccc-c--
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQ-V-- 176 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~-~-- 176 (302)
++.+|++++ +.+|++++++.++ +++++|++++| |++|... + +++|.++|+++++++|+|.++..-. .
T Consensus 141 ~~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 216 (391)
T PRK08361 141 PIRIPLREENEFQPDPDELLELIT---KRTRMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA 216 (391)
T ss_pred EEEEecCCccCCCCCHHHHHHhcc---cccEEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCC
Confidence 999999764 4699999999998 67899999999 5899886 5 8899999999999999999863111 0
Q ss_pred ccCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 177 GLCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 177 ~~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...+.. ....++++.+.+|+|+.| |.|+|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~i~~~s~SK~~~~~----GlRiG~~~~~~~~~~~~ 259 (391)
T PRK08361 217 KHYPMIKYAPDNTILANSFSKTFAMT----GWRLGFVIAPEQVIKDM 259 (391)
T ss_pred CCCCHhhcCCCCEEEEecCchhcCCc----HhhhhhhccCHHHHHHH
Confidence 000111 123467888888988755 78899999987776654
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=150.91 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=129.7
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++.+.+.+.+|. +.. ++..++|+ ++...+ +..+. +++|.|++++|.|+.+...++..|+
T Consensus 69 ~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~---~~~~~-----~~gd~vlv~~P~y~~~~~~~~~~g~ 140 (389)
T PRK08068 69 FRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVEL---PQCLM-----NPGDTILVPDPGYPDYLSGVALARA 140 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH---HHHhC-----CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 578888888888888777784 444 56666666 433222 22221 6789999999999988888899999
Q ss_pred EEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-
Q psy7357 105 SVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 105 ~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~- 177 (302)
+++.+|++++ ..+|++++++.++ +++++|+++|| ||||.+- +.+++|.++|+++++++|+|.++.- ....
T Consensus 141 ~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~ 217 (389)
T PRK08068 141 QFETMPLIAENNFLPDYTKIPEEVA---EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ 217 (389)
T ss_pred EEEEeecccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC
Confidence 9999999753 4679999999987 67899999999 5999873 1467888899999999999998621 1111
Q ss_pred -----cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 178 -----LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 178 -----~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+...+...-.+++.+..|+|+.| |.|+|++++++++++.+
T Consensus 218 ~~~s~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~l 262 (389)
T PRK08068 218 KPVSFLQTPGAKDVGIELYTLSKTFNMA----GWRVAFAVGNESVIEAI 262 (389)
T ss_pred CCcChhhCCCccCCEEEEecchhccCCc----cceeEeEecCHHHHHHH
Confidence 00011112236777777777654 89999999988777655
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=149.28 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+.+.+.+.+.+|.. ..++..++|+ ++...++.++. +++|.|+++++.|+.+...++..|.
T Consensus 66 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~g~ 137 (391)
T PRK07309 66 MAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL--------EPGDKVLLPAPAYPGYEPIVNLVGA 137 (391)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEeCCCCcchHHHHHHcCC
Confidence 4677788888888887777753 2345566665 54434433332 6889999999999888888889999
Q ss_pred EEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccccc-c-c
Q psy7357 105 SVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQV-G-L 178 (302)
Q Consensus 105 ~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~-~-~ 178 (302)
+++.+|.+++ ..+|++++++++++.++++++|++++| |++|..- .++++|.++|+++|+++++|.++..-.. + .
T Consensus 138 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~ 217 (391)
T PRK07309 138 EIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEP 217 (391)
T ss_pred EEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCC
Confidence 9999998664 478999999999754457899999998 5999862 2699999999999999999998632111 1 0
Q ss_pred -CCCCccCCc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 -CRPGDYGSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 -~~p~~~gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+......| +++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 218 ~~~~~~~~~~~~i~~~S~SK~~g~~----GlRvG~~v~~~~~~~~~~ 260 (391)
T PRK07309 218 HVSIAEYLPDQTILINGLSKSHAMT----GWRIGLIFAPAEFTAQLI 260 (391)
T ss_pred CCCHHHhccCCEEEEecChhhccCc----cceeEEEEeCHHHHHHHH
Confidence 011111112 6777778887755 899999999987766554
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=153.83 Aligned_cols=171 Identities=22% Similarity=0.222 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc----c--HHHHHhCCCEEE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT----N--PASAQMAGMSVE 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~----~--~~~~~~~g~~v~ 107 (302)
+...++++.+++++|.+.+ +..++|+.|...++.+ + .++|+|++++..|.. + +......|++++
T Consensus 127 ~r~~~~e~~lA~l~Gae~a-~vv~sgtaAl~l~l~~---l------~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~ 196 (464)
T PRK04311 127 SRDRALAALLCALTGAEDA-LVVNNNAAAVLLALNA---L------AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLV 196 (464)
T ss_pred hHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHH---h------CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEE
Confidence 3467899999999999865 4566777655333322 2 578999999875432 1 234567899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C--cee--ccccHHHHHHHHHHhCCEEEEecCCcc-----ccc-
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T--FGV--FEENITDVCELIHEHGGQVYLDGANMN-----AQV- 176 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~--~G~--~~~di~~I~~ia~~~g~llivD~a~~~-----~~~- 176 (302)
+++.+ +..|+++++++|+ ++|++|++.+++ + +|. .. |+++|+++||++|+++++|.+... ..+
T Consensus 197 ~v~~~--~~t~~~dle~aI~---~~TklV~~vh~sN~~i~G~~~~~-dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl 270 (464)
T PRK04311 197 EVGTT--NRTHLRDYEQAIN---ENTALLLKVHTSNYRIEGFTKEV-SLAELAALGKEHGLPVVYDLGSGSLVDLSQYGL 270 (464)
T ss_pred EECCC--CCCCHHHHHHhcC---ccCeEEEEEcCCCccccccCCcC-CHHHHHHHHHHcCCeEEEECCCcccccchhccC
Confidence 99863 4578999999998 789999999874 4 453 45 899999999999999999985210 010
Q ss_pred ----ccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 177 ----GLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 177 ----~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
.+..|.++|+|++++|+||+|+ ||+.|++++++++++++.....
T Consensus 271 ~~~p~~~~~l~~GaDiv~fSg~K~Lg------Gp~~G~i~g~~~li~~l~~~~~ 318 (464)
T PRK04311 271 PDEPTVQELLAAGVDLVTFSGDKLLG------GPQAGIIVGKKELIARLKKHPL 318 (464)
T ss_pred CCCCchhhHHhcCCcEEEecCccccc------CCceEEEEEcHHHHHHHhhchh
Confidence 1123345899999999999986 7789999999988887764333
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=147.73 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=130.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..+++..+.+.+.+..|. +.. ++..++|++. +...++..+. ..| +++|.|+++++.|..+...++..|.+
T Consensus 35 ~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~--ai~~~~~~~~-~~g-~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 35 ALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKE--AIFHFPLVFI-DPE-EDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH--HHHHHHHHHc-CCC-CCCceEEEcCCCCcchHHHHHhcCCE
Confidence 588889999999998888785 444 6778888742 2222222221 011 12379999999999888889999999
Q ss_pred EEEeecCC-CC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-cccc-
Q psy7357 106 VEPVSVRK-DG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVGL- 178 (302)
Q Consensus 106 v~~i~~~~-~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~~- 178 (302)
++.+|.++ +| .+|++++++++. ++++++++++| |++|...+ .+++|.++|+++|+++|+|.++..- ...-
T Consensus 111 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 187 (350)
T TIGR03537 111 PTAVKLKKEDGFLLRLEKVEKSIL---EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPP 187 (350)
T ss_pred EEEcccCcccCCccCHHHHHHhhh---hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC
Confidence 99999973 33 589999999997 67899999999 59998741 3899999999999999999986321 1110
Q ss_pred CCCCccCC--cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPGDYGS--DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~~~ga--Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+...++. .+++.+.+|+++.| |.|+|++++++++.+.+.
T Consensus 188 ~~~~~~~~~~~i~~~s~SK~~g~~----GlRiG~~~~~~~~~~~~~ 229 (350)
T TIGR03537 188 HSALEVGIENVLAFHSLSKRSGMT----GYRSGFVAGDEKLISFLR 229 (350)
T ss_pred CchhhcCcCCEEEEeecccccCCc----cccceeeecCHHHHHHHH
Confidence 01111122 26666778877654 889999998876665543
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=149.51 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +.+.||..|+.++++++. ++||+||++.+.|+..... ....|++++++
T Consensus 61 Ptv~~lE~~la~leg~~~a-v~~~SG~aAi~~al~all--------~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~v 131 (432)
T PRK06702 61 PTLAAFEQKLAELEGGVGA-VATASGQAAIMLAVLNIC--------SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFF 131 (432)
T ss_pred cHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEE
Confidence 4588999999999999876 446788887766666553 6899999999988755443 56789999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
.. .+|+++++++|+ ++|++|++++| |+++.+. |+++|+++||++|+++++|++. +...+.+|-++|+||
T Consensus 132 d~----~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~-Di~~I~~iA~~~gi~livD~T~--~tP~~~~pl~~GADI 201 (432)
T PRK06702 132 NP----NLTADEIVALAN---DKTKLVYAESLGNPAMNVL-NFKEFSDAAKELEVPFIVDNTL--ATPYLCQAFEHGANI 201 (432)
T ss_pred CC----CCCHHHHHHhCC---cCCeEEEEEcCCCcccccc-CHHHHHHHHHHcCCEEEEECCC--CchhhCChhhcCCCE
Confidence 64 479999999998 89999999998 6888888 8999999999999999999864 333446788999999
Q ss_pred EEeCCCcccCCC
Q psy7357 189 SHLNLHKTFCIP 200 (302)
Q Consensus 189 v~~~~hK~l~~p 200 (302)
++.|.+|+++.+
T Consensus 202 vv~S~TKy~~Gh 213 (432)
T PRK06702 202 IVHSTTKYIDGH 213 (432)
T ss_pred EEEccccccCCC
Confidence 999999999854
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=143.57 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++.+|.+.. +.+.+|++|...++.++. .++||+|+++++.|..+...+...|++++.+++++
T Consensus 31 ~~~~~~e~~la~~~g~~~~-v~~~sgt~aL~~~l~al~-------~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~ 102 (376)
T TIGR02379 31 PFSRRCETWLENRTGTKKA-LLTPSCTAALEMAALLLD-------IQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRP 102 (376)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC
Confidence 5688999999999999874 445666666533433331 16899999999998877777778899999999987
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCccCCcEEEe
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~gaDiv~~ 191 (302)
+ +.+|+++++++++ ++|++|+.++| +|... |+++|.++|+++|+++|.|+++..+.. .-...+.++ |+.++
T Consensus 103 ~~~~~d~~~le~~i~---~~tk~Iip~~~--~G~~~-d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~-~~~~f 175 (376)
T TIGR02379 103 DTMNIDETLIESAIT---HRTKAIVPVHY--AGVAC-DMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIG-HLGTF 175 (376)
T ss_pred CcCCCCHHHHHHhcC---cCceEEEEeCC--CCCcc-CHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCC-CEEEE
Confidence 6 5799999999998 78999987764 58887 899999999999999999999854321 112334443 88888
Q ss_pred CCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
|.|++ +.+.. |+.+|+++++ +++.+++
T Consensus 176 Sf~~~--K~l~~-g~~gG~v~~~~~~~~~~~ 203 (376)
T TIGR02379 176 SFHET--KNYTS-GGEGGALLINDQAFIERA 203 (376)
T ss_pred eCCCC--CcCcc-cCCceEEEECCHHHHHHH
Confidence 87763 33333 4557887776 4555444
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=151.62 Aligned_cols=170 Identities=17% Similarity=0.119 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~ 104 (302)
+.+.....+++++.++.+-+.+.. +.+.+|..|..++++++. ++||+||++++.|+.+.. .++..|+
T Consensus 59 sR~gnPt~~~Le~~la~le~~~~~-v~~sSG~aAi~~~l~all--------~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi 129 (395)
T PRK05967 59 GTRGTPTTDALCKAIDALEGSAGT-ILVPSGLAAVTVPFLGFL--------SPGDHALIVDSVYYPTRHFCDTMLKRLGV 129 (395)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCE-EEECcHHHHHHHHHHHhc--------CCCCEEEEccCCcHHHHHHHHHHHHhcCe
Confidence 445557788999999999886654 556678777655555553 789999999999887654 3567899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.+ |.++++++++ ++|++|++++| |+++.+. |+++|+++||++|+++++|+++. .....+|.+
T Consensus 130 ~v~~vd~~-----~~e~l~~al~---~~TklV~lesPsNP~l~v~-dl~~I~~la~~~g~~vvVD~t~a--~p~~~~pl~ 198 (395)
T PRK05967 130 EVEYYDPE-----IGAGIAKLMR---PNTKVVHTEAPGSNTFEMQ-DIPAIAEAAHRHGAIVMMDNTWA--TPLYFRPLD 198 (395)
T ss_pred EEEEeCCC-----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHhCCEEEEECCcc--CceecChhH
Confidence 99998642 4578999998 78999999998 6888888 89999999999999999998753 333468999
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+|+++.|++|++++. |+--+|+++.++++++++
T Consensus 199 ~GaDivv~S~tKy~~Gh---~d~~~G~v~~~~~~~~~l 233 (395)
T PRK05967 199 FGVDISIHAATKYPSGH---SDILLGTVSANEKCWPQL 233 (395)
T ss_pred cCCCEEEEecccccCCC---CCeeEEEEEcCHHHHHHH
Confidence 99999999999987632 234578777776554443
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-16 Score=147.30 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-HH---HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-PA---SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~~---~~~~~g~~v~~ 108 (302)
.....++++.++++.|.+.+ +...+|+.+..+ ++++. ++||+|+++++.|+.. .. .+...|++++.
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~-~~~~sG~aai~~-~~~~l--------~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~ 118 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAG-FAFGSGMAAITA-VMMLF--------SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTF 118 (377)
T ss_pred ChHHHHHHHHHHHHhCCCce-EEeCCHHHHHHH-HHHHh--------CCCCEEEECCCccchHHHHHHHHHhcCCeEEEE
Confidence 35688999999999998875 556778765422 22222 6799999999988744 32 33467999998
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++. .|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++... ....|..+++|
T Consensus 119 v~~-----~d~~~l~~ai~---~~tklV~le~P~NPtg~~~-dl~~I~~la~~~g~~lvvD~a~~~~--~~~~p~~~g~D 187 (377)
T PRK07671 119 VDT-----SNLEEVEEAIR---PNTKAIYVETPTNPLLKIT-DIKKISTIAKEKGLLTIVDNTFMTP--YWQSPISLGAD 187 (377)
T ss_pred ECC-----CCHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCCcc--ccCChhhhCCe
Confidence 874 38999999998 78999999999 5899998 8999999999999999999986422 22356678999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
+++.+++|+|+.|.+ --.|++++++ ++.+++
T Consensus 188 ivv~S~sK~l~G~~~---~~~G~~v~~~~~l~~~~ 219 (377)
T PRK07671 188 IVLHSATKYLGGHSD---VVAGLVVVNSPELAEDL 219 (377)
T ss_pred EEEecCcccccCCcc---ceeEEEEeCcHHHHHHH
Confidence 999999999974421 1257677753 454443
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=150.43 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=128.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..|..+...++++.+++++|.+.. +...+|++|+.+++.++. +++|+|+++++.|+++...++..+.+.+.
T Consensus 78 ~~G~~~~~~~le~~ia~~~g~~~~-ii~~~~~~a~~~~~~~l~--------~~gd~vi~~~~~~~s~~~~~~~~~~~~~~ 148 (393)
T TIGR01822 78 ICGTQDIHKELEAKIAAFLGTEDT-ILYASCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRLCKAKRYR 148 (393)
T ss_pred ccCChHHHHHHHHHHHHHhCCCcE-EEECchHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHhcCCceEE
Confidence 448788899999999999999764 444567776645444442 68999999999988877766666766654
Q ss_pred eecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-----
Q psy7357 109 VSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC----- 179 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~----- 179 (302)
++ ..|++++++.+++. +.++++|++.++ |++|.+. |+++|+++|+++|+++++|++|..+..+..
T Consensus 149 ~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~-~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~ 222 (393)
T TIGR01822 149 YA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA-PLDEICDLADKYDALVMVDECHATGFLGPTGRGSH 222 (393)
T ss_pred eC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC-CHHHHHHHHHHcCCEEEEECCccccCcCCCCCchH
Confidence 43 37999999999742 227888888776 6889998 799999999999999999999854332110
Q ss_pred -CCC-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 -RPG-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 -~p~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..+ ..++|++++++||+++ ||++|++++++++++.+
T Consensus 223 ~~~~~~~~~di~~~s~sK~l~------g~r~G~~~~~~~~~~~l 260 (393)
T TIGR01822 223 ELCGVMGRVDIITGTLGKALG------GASGGFTTARKEVVELL 260 (393)
T ss_pred HhcCCCCCCeEEEEEChHHhh------CCCcEEEEeCHHHHHHH
Confidence 011 1257999999999875 67889999987766544
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=148.60 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|..|..+ ++++. ++||+|+++++.|+.... ..+..|++++.+
T Consensus 52 pt~~~le~~la~l~g~~~~-~~~~sG~~ai~~-~~~ll--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 121 (366)
T PRK08247 52 PTRGVLEQAIADLEGGDQG-FACSSGMAAIQL-VMSLF--------RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYV 121 (366)
T ss_pred chHHHHHHHHHHHhCCCcE-EEEcCHHHHHHH-HHHHh--------CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEE
Confidence 4578999999999999876 556777766533 22322 578999999998876433 345689999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++|| ++|... |+++|+++||++|+++++|.++.... ...|.+.++|+
T Consensus 122 d~-----~d~~~l~~~i~---~~tklv~le~P~NP~~~~~-dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p~~~g~di 190 (366)
T PRK08247 122 NT-----ASLKAIEQAIT---PNTKAIFIETPTNPLMQET-DIAAIAKIAKKHGLLLIVDNTFYTPV--LQRPLEEGADI 190 (366)
T ss_pred CC-----CCHHHHHHhcc---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcccc--ccCchhcCCcE
Confidence 75 48999999998 789999999995 888888 89999999999999999999864333 23466678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|.+|+++.+ ++...|++.++ +++.+++
T Consensus 191 ~i~S~sK~~~g~---~d~~~G~iv~~~~~l~~~~ 221 (366)
T PRK08247 191 VIHSATKYLGGH---NDVLAGLVVAKGQELCERL 221 (366)
T ss_pred EEeecceeccCC---CceeeeEEecChHHHHHHH
Confidence 999999999732 23367888886 4554443
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=150.85 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=129.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCC---CCEEEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHH---RNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~---~d~Vlv~~~~hg~~~~~~~ 100 (302)
.+|..++++.+.+++.+.+|.+ .. ++..++|++ +...++.++. ++ +|.|++++|.|+.+...++
T Consensus 64 ~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--------~~~~~gd~vlv~~P~y~~~~~~~~ 135 (396)
T PRK09147 64 TAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI--------DRDGPGPLVVCPNPFYQIYEGAAL 135 (396)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc--------CCCCCCCEEEEcCCCccchHHHHH
Confidence 5788888888888888877854 33 677777774 3433333332 46 8899999999988888888
Q ss_pred hCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-
Q psy7357 101 MAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA- 174 (302)
Q Consensus 101 ~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~- 174 (302)
..|.+++.+|++++ ..+|++++++.+. +++++++++|| ||||.+- +++++|.++|+++++++|.|.++.--
T Consensus 136 ~~g~~~~~vp~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 212 (396)
T PRK09147 136 LAGAEPYFLNCDPANNFAPDFDAVPAEVW---ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIY 212 (396)
T ss_pred hcCCEEEEeccCccccCccCHHHHHHHHh---hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccc
Confidence 99999999999753 4799999999887 68899999999 5999872 26889999999999999999986321
Q ss_pred cccc-CCC------CccCC---c--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 QVGL-CRP------GDYGS---D--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~~~~-~~p------~~~ga---D--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...- ..+ ...+. | |++.+..|.|+.| |.|+|++++++++++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~----GlRiG~~~~~~~l~~~~ 267 (396)
T PRK09147 213 FDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVP----GLRSGFVAGDAALLKKF 267 (396)
T ss_pred cCCCCCCchhhhhccccCccccccEEEEeccccccCCc----cceeeeecCCHHHHHHH
Confidence 1110 000 01111 2 6666666766544 89999999988776655
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=149.54 Aligned_cols=183 Identities=19% Similarity=0.233 Sum_probs=130.1
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++++.+++.+..|. +..++..++|+. +...++.++. .++||.|++++|.|+.+...++..|.+
T Consensus 106 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-------~~pGd~Vli~~P~Y~~y~~~~~~~g~~ 178 (407)
T PLN02368 106 SRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI-------RGEKDGVLVPVPQYPLYSATISLLGGT 178 (407)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc-------CCCCCEEEEeCCCCccHHHHHHHcCCE
Confidence 689889999999888887785 445777778874 4433333322 147999999999999998889999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCcc-ccc
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANMN-AQV 176 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~~-~~~ 176 (302)
++.+|++++ ..+|+++|++.+++. ..++++++++|| |+||.+ .+.+++|.++|+++|+++|.|.++.- ...
T Consensus 179 ~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~ 258 (407)
T PLN02368 179 LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQ 258 (407)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 999998753 579999999999731 127899999999 699987 22688999999999999999998632 111
Q ss_pred c---cCCCC----cc------CCc-EEEeCCCcccCCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 177 G---LCRPG----DY------GSD-VSHLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 177 ~---~~~p~----~~------gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
. ..+.. .+ ... |++.+.+|+|+ ++.|+|+||+.+ ++++++.+
T Consensus 259 ~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~---~~~GlRiGy~i~~~~~~~li~~~ 317 (407)
T PLN02368 259 DERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYW---GECGQRGGYFEMTNIPPKTVEEI 317 (407)
T ss_pred CCCCcccHHHHHhhhcccccccceEEEEecCCcccc---cCCccceEEEEEeCCCHHHHHHH
Confidence 1 11100 11 113 44455566662 344999999985 55665544
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-16 Score=143.20 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=136.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
++-|.| ++|.+.+++++.+.+.+-..- +...+..++| ++|.+.++.++. +++-.||+|+|.|+.|.
T Consensus 96 ~N~Yap---s~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA--------~p~aNILlPrPGfp~Y~ 164 (447)
T KOG0259|consen 96 GNGYAP---SVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA--------NPGANILLPRPGFPLYD 164 (447)
T ss_pred CCCcCC---ccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc--------CCCCceecCCCCCchHH
Confidence 677777 899999999888876553332 2234455555 688767766654 78889999999998888
Q ss_pred HHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
.-+...|++|+.+.+-+ +..+|++.+|++++ ++|+++++.|| |+.|.+ ...+++|+++|+++|+++|.|+++
T Consensus 165 ~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY 241 (447)
T KOG0259|consen 165 TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVY 241 (447)
T ss_pred HhhhhcCceeEeecccCcccceechHHHHHhhc---cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhc
Confidence 88889999999998754 56899999999999 89999999999 588865 225999999999999999999986
Q ss_pred cc-ccc--ccCCCCccCC--c-EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 172 MN-AQV--GLCRPGDYGS--D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 172 ~~-~~~--~~~~p~~~ga--D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
-. .++ .+.+.+.+.- - +.+++..|.+-.| |||+|+++..+.
T Consensus 242 ~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VP----GWRlGWi~~hD~ 288 (447)
T KOG0259|consen 242 GHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVP----GWRLGWIALHDP 288 (447)
T ss_pred ceeecCCCCccchhhccccCceEeecccccccccC----CceeeeEEEecc
Confidence 32 122 1223344432 2 4455578888888 999999999853
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=150.12 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=135.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
+..|.+ .+|..++++++.+++.+.+|.+ .. ++..++|+ +|...++.++. ++||+|+++++.|+.+
T Consensus 50 ~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~ 118 (378)
T PRK07682 50 YTSYTA---NAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII--------NPGDEVLIVEPSFVSY 118 (378)
T ss_pred CCCCCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC--------CCCCEEEEeCCCchhh
Confidence 344554 5788899999999998877764 22 46666665 44433333332 6899999999999888
Q ss_pred HHHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecC
Q psy7357 96 PASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a 170 (302)
...++..|.+++.++.+. ++.+|+++++++++ +++++|++++| |++|.+. +++++|.++|+++++++|+|.+
T Consensus 119 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~ 195 (378)
T PRK07682 119 APLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT---AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEI 195 (378)
T ss_pred HHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC---cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehh
Confidence 888888999999999853 46799999999997 68899999999 5899873 2599999999999999999998
Q ss_pred Ccccc-cc-cCC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 171 NMNAQ-VG-LCR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 171 ~~~~~-~~-~~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+..-. .. ..+ ++...-.+++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 196 y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlR~G~~~~~~~~i~~l~ 249 (378)
T PRK07682 196 YAELTYDEAYTSFASIKGMRERTILISGFSKGFAMT----GWRLGFIAAPVYFSEAML 249 (378)
T ss_pred hhhcccCCCCCChhhcccccCCEEEEecCcccccCh----hhhhhhhhcCHHHHHHHH
Confidence 63111 00 000 11112357777778887655 889999999987777653
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=149.81 Aligned_cols=178 Identities=20% Similarity=0.200 Sum_probs=133.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--e-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--I-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.+. . ++..++|+ +|..+++.++. +++|+|+++.+.|+.+...++..|.
T Consensus 60 ~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~vli~~p~y~~~~~~~~~~g~ 131 (387)
T PRK07777 60 GPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV--------EPGDEVLLIEPYYDSYAAVIAMAGA 131 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHCCC
Confidence 57888888888888888888753 2 35555554 55534443332 6789999999998888778888999
Q ss_pred EEEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cc-c
Q psy7357 105 SVEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQ-V 176 (302)
Q Consensus 105 ~v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~-~ 176 (302)
+++.++.+++ +.+|+++++++++ +++++|++++| |++|... +++++|.++|+++++++|+|.++.. .. .
T Consensus 132 ~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~ 208 (387)
T PRK07777 132 HRVPVPLVPDGRGFALDLDALRAAVT---PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDG 208 (387)
T ss_pred EEEEeecCCccCCCcCCHHHHHHhcC---cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCC
Confidence 9999998754 3589999999987 67899999998 5899863 2699999999999999999988631 11 0
Q ss_pred ----ccCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 177 ----GLCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 177 ----~~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.. ++..+.++++.+.+|+|+.| |.|+|++.+++++.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~~ 254 (387)
T PRK07777 209 ARHLPLATLPGMRERTVTISSAAKTFNVT----GWKIGWACGPAPLIAAV 254 (387)
T ss_pred CCcccHhhCCCCcCcEEEEeechhhccCc----CceeEEEecCHHHHHHH
Confidence 1111 12234578888889988765 88999999988766554
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=150.59 Aligned_cols=186 Identities=20% Similarity=0.187 Sum_probs=132.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
..|.+ .+|..++++.+.+.+.+.+|.+ .. ++..++|++ +...++.++. ++||.|++++|.|+.+.
T Consensus 62 ~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~ 130 (405)
T PRK09148 62 HRYSA---SKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT--------APGDVILCPNPSYPIHA 130 (405)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc--------CCCCEEEEcCCCCcccH
Confidence 44554 5788899999999888877753 44 577777874 3433333332 68999999999998888
Q ss_pred HHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 97 ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~ 173 (302)
..+...|.+++.+|.+.++. +++++++.++.+.+++++|++++| |++|...+ .+++|.++|+++|+++|+|.++..
T Consensus 131 ~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~ 209 (405)
T PRK09148 131 FGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSE 209 (405)
T ss_pred HHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchh
Confidence 78888999999999875542 355566666544478899999998 59998741 367899999999999999998731
Q ss_pred -cccc--cCCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 174 -AQVG--LCRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 174 -~~~~--~~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.... ..+.. ..+..|++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 210 ~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p----GlR~G~~v~~~~~i~~l~ 261 (405)
T PRK09148 210 IYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA----GWRMGFAVGNERLIAALT 261 (405)
T ss_pred hhcCCCCCCChhhCCCccCcEEEEeccccccCCc----chheeeeeCCHHHHHHHH
Confidence 1111 11111 112235577778888766 899999999887776553
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=150.51 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=132.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCC---ee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYD---KI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~---~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+|..++++.+.+.+.+.+|.+ .. ++..++|++.. ...++..+. ++||.|++++|.|+.+...++..|.+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a--l~~~~~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~ 153 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA--LAMLPSCFI-----NPGDVTLMTVPGYPVTGTHTKYYGGE 153 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH--HHHHHHHhC-----CCCCEEEEeCCCCccHHHHHHHcCCE
Confidence 688888888888888777754 33 68888888522 122222221 68999999999998888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-cccc-
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVGL- 178 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~~- 178 (302)
++.+|.+++ ..+|++++++.+. +++++|++++| ||||.+-+ .+++|.++|+++|+++++|.++..- ....
T Consensus 154 v~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~ 230 (410)
T PRK06290 154 VYNLPLLEENNFLPDLDSIPKDIK---EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKP 230 (410)
T ss_pred EEEEecCCCcCCcCCHHHHHHhhc---ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCC
Confidence 999999764 4679999999887 68899999999 59998741 4788899999999999999986421 1110
Q ss_pred CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ ......+|++.+.+|+++.| |.|+||+++++++++.+.
T Consensus 231 ~s~~~~~~~~~~~I~i~SfSK~~g~~----GlRiG~ii~~~~l~~~l~ 274 (410)
T PRK06290 231 LSFLSVPGAKEVGVEIHSLSKAYNMT----GWRLAFVVGNELIVKAFA 274 (410)
T ss_pred cChhcCCCccccEEEEeechhhcCCc----hhheEeEEeCHHHHHHHH
Confidence 01 11123458888777877654 899999999887766553
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=149.52 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=130.2
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+++.+..|. +.. ++..++|++ +...++.++. ++||.|++++|.|+.+...++..|.
T Consensus 67 ~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 138 (388)
T PRK07366 67 FHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL--------NPGDFALLLDPGYPSHAGGVYLAGG 138 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 578888888888888877774 444 577777874 3322222222 6899999999999988888999999
Q ss_pred EEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccccc
Q psy7357 105 SVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGL 178 (302)
Q Consensus 105 ~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~ 178 (302)
+++.+|++++ ...|++++++.+. +++++|++++| ||||..- +.+++|.++|+++|+++|.|.++.- .....
T Consensus 139 ~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~ 215 (388)
T PRK07366 139 QIYPMPLRAENDFLPVFADIPTEVL---AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE 215 (388)
T ss_pred EEEEEECCCccCCCCCHHHHHHhhc---ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCC
Confidence 9999999754 3578999988876 67899999999 5999872 2578888899999999999998631 11110
Q ss_pred ---CCCC---ccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 ---CRPG---DYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ---~~p~---~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+.. ..+.. |++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~vi~~~SfSK~~g~~----GlRiG~~v~~~~li~~l~ 262 (388)
T PRK07366 216 VEPPSILQADPEKSVSIEFFTLSKSYNMG----GFRIGFAIGNAQLIQALR 262 (388)
T ss_pred CCCCChhhCCCCcccEEEEeecccccCCc----chhheehcCCHHHHHHHH
Confidence 0111 11112 5566677777655 899999999888776653
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=149.34 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=129.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|+ +|...++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 66 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 137 (388)
T PRK07337 66 ALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV--------ERGDEVLMPDPSYPCNRHFVAAAEGR 137 (388)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCE
Confidence 578778888888888777775 44466666665 43322222222 68999999999999888778888999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~~~-~ 178 (302)
++.+|.++ ++.+|++++++.++ +++++|++++| |++|... +++++|.++|+++|+++++|.++. ..... .
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 214 (388)
T PRK07337 138 PVLVPSGPAERFQLTAADVEAAWG---ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAP 214 (388)
T ss_pred EEEeecCCccCCcCCHHHHHhhcC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCC
Confidence 99999874 35799999999997 78899999999 5899863 158999999999999999998753 11111 1
Q ss_pred CCCCccCCcEE-EeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPGDYGSDVS-HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~~~gaDiv-~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+...++.+++ +.+.+|+|+.| |.|+|++++++++++.+
T Consensus 215 ~~~~~~~~~vi~~~S~SK~~~~~----G~RiG~~~~~~~l~~~l 254 (388)
T PRK07337 215 VSALSLGDDVITINSFSKYFNMT----GWRLGWLVVPEALVGTF 254 (388)
T ss_pred cChhhccCCEEEEEechhhcCCc----hhheeeeecCHHHHHHH
Confidence 11222344554 55677877655 89999999987766554
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-16 Score=147.04 Aligned_cols=183 Identities=17% Similarity=0.229 Sum_probs=132.3
Q ss_pred cccccHHHHHHHHHHHHHHHhCCC--------eeeEeeCchHHHHHHHHHHHHHHHHh----hcC--CCCCEEEEcCCCC
Q psy7357 27 DQARGYEQLIGELETDLCEITGYD--------KISFQPNSGAQGEYAGLRAIQCYHQA----QDA--HHRNVCLIPVSAH 92 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~--------~~~~~~~~Ga~a~~a~l~a~~~~~~~----~g~--~~~d~Vlv~~~~h 92 (302)
+.+....++-.++.+++++++|.+ ...+.+.+|+.+++.++.+.|..+.. .+. .++-+|++++..|
T Consensus 72 ~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH 151 (373)
T PF00282_consen 72 EASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH 151 (373)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-
T ss_pred ccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 556777788888999999999998 23556677888887888877764321 121 1234788898899
Q ss_pred cccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCC---eEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 93 GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKET---LSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 93 g~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~---t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
.+....+...|+.++.||+++++.+|+++|+++|++...+ +.+|+.+-++ .+|.++ |+++|+++|+++++++|||
T Consensus 152 ~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D-~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 152 YSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID-PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB--SHHHHHHHHHHCT-EEEEE
T ss_pred cHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCccccccc-CHHHHhhhccccceeeeec
Confidence 8888899999999999999999999999999999743222 3355556564 789999 8999999999999999999
Q ss_pred cCCccccccc--CC---CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 169 GANMNAQVGL--CR---PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 169 ~a~~~~~~~~--~~---p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+|..-+.... .+ .+-..+|-++.+.||++..|+ +.|++++++
T Consensus 231 aA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~-----~~~~~l~r~ 277 (373)
T PF00282_consen 231 AAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPY-----GCGVLLVRD 277 (373)
T ss_dssp ETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SS-----S-EEEEESS
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCc-----cceeEEeec
Confidence 9863211111 11 133468999999999999874 567888885
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-16 Score=144.56 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.++++..++..++|++.. ...+++.+. +++|+|+++++.|+.+...+...|.+++.+|.+ ++
T Consensus 66 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~--l~~~~~~~~-----~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~ 137 (359)
T PRK03158 66 APELRTKVAKHLGVDEEQLLFGAGLDEV--IQMISRALL-----NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DG 137 (359)
T ss_pred HHHHHHHHHHHhCCCHHHEEECCCHHHH--HHHHHHHHh-----CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CC
Confidence 3567888999999887777777787422 122223222 578999999999887777788889999999996 67
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccc-ccc-CCC----CccCC
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQ-VGL-CRP----GDYGS 186 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~-~~~-~~p----~~~ga 186 (302)
.+|++++++.++ +++++|++++| |++|.+. +.+++.++++. +|+++|+|.++..-. ... ..+ ...+-
T Consensus 138 ~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~-~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 213 (359)
T PRK03158 138 GHDLEAMLKAID---EQTKIVWICNPNNPTGTYV-NHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYEN 213 (359)
T ss_pred CcCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCC
Confidence 799999999887 68889999999 5999988 68888888877 589999999863211 110 011 11233
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+++.+..|+|+.| |.|+|++++++++++.+
T Consensus 214 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~ 244 (359)
T PRK03158 214 LIVLRTFSKAYGLA----ALRVGYGIASEELIEKL 244 (359)
T ss_pred EEEEEechHhhcCc----chhhehhcCCHHHHHHH
Confidence 46666667776644 88999999988766654
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=153.39 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=123.8
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++++.+.+.+..+ ++..++..++|++ +. .++++.++ ++||+|++++|.|+.+...++..|.+
T Consensus 184 ~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal---~~~~~~l~-----~~Gd~Vli~~P~y~~y~~~~~~~g~~ 255 (517)
T PRK13355 184 SKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI---NLSMSALL-----DDGDEVLIPSPDYPLWTACVNLAGGT 255 (517)
T ss_pred CcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH---HHHHHHhC-----CCCCEEEEcCCCCcCHHHHHHHCCCE
Confidence 68888888888877755443 4556777777874 33 22333222 68999999999999888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-- 177 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-- 177 (302)
++.++++++ +.+|+++|+++++ +++++|+++|| |+||.+- +++++|.++|+++|+++|+|.++.- ...+
T Consensus 256 ~v~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~ 332 (517)
T PRK13355 256 AVHYRCDEQSEWYPDIDDIRSKIT---SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE 332 (517)
T ss_pred EEEeecCcccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC
Confidence 999998753 5799999999997 78999999999 5999873 2489999999999999999998631 1111
Q ss_pred cCCCCccCCc--EEE-eCCCcccCCCCCCCCCcceeEEEe
Q psy7357 178 LCRPGDYGSD--VSH-LNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 178 ~~~p~~~gaD--iv~-~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..+......| +++ .+.+|+++ +.|+|+||++++
T Consensus 333 ~~s~~~~~~~~~vi~~~S~SK~~~----~~G~RiG~~i~~ 368 (517)
T PRK13355 333 HTSIASLAPDLFCVTFSGLSKSHM----IAGYRIGWMILS 368 (517)
T ss_pred cccHHHhCCCCeEEEEecchhhcc----CcccceEEEEee
Confidence 1111122224 332 44556655 459999999965
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-15 Score=142.65 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH-HHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY-HQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~-~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
...++++.+++++|.+.+ +.+++|+.|...++.++... ....+.++||+|+++++.|..+...+...|++++.++++.
T Consensus 64 ~~~~fe~~lA~~~g~~~~-v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~ 142 (438)
T PRK15407 64 FNDAFEKKLAEFLGVRYA-LLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL 142 (438)
T ss_pred hHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC
Confidence 467899999999999864 55677887765655554210 0001225789999999999888777888999999999874
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
++.+|+++++++++ ++|++|+++++ +|... |+++|.++|+++|+++|.|+++..+...- ...|.+| |+.++
T Consensus 143 ~~~~id~~~le~~i~---~~tkaVi~~~~--~G~p~-dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~f 215 (438)
T PRK15407 143 PTYNIDASLLEAAVS---PKTKAIMIAHT--LGNPF-DLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATL 215 (438)
T ss_pred CcCCcCHHHHHHHcC---cCCeEEEEeCC--CCChh-hHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceEEE
Confidence 67899999999998 78999999874 57767 79999999999999999999986543221 2356676 99999
Q ss_pred CCCcccCCCCCCCCCcceeEEEeC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
|.|.+- .... |.| |++++++
T Consensus 216 Sf~~~k--~~~~-geG-G~l~t~d 235 (438)
T PRK15407 216 SFYPAH--HITM-GEG-GAVFTND 235 (438)
T ss_pred eCCCCC--Cccc-cCc-eEEEECC
Confidence 876532 2222 444 9999874
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=147.39 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=125.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
+.|.+ .+|..++++.+.+.+.+-.|. +..++..++|+ +|...++.++. ++||+|++++|.|+.+..
T Consensus 88 ~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~--------~~Gd~Vlv~~P~y~~y~~ 156 (430)
T PLN00145 88 NSYST---CVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA--------QPGANILLPRPGYPLYEA 156 (430)
T ss_pred CCCCC---CccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHH
Confidence 34554 578878877777777665554 34566666665 44433333322 689999999999988888
Q ss_pred HHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCc
Q psy7357 98 SAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~ 172 (302)
.+...|++++.+++.+ ++.+|+++++++++ +++++++++|| |++|.+.+ ++++|.++|+++|+++|+|.++.
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~ 233 (430)
T PLN00145 157 RAVFSGLEVRHFDLLPERGWEVDLEGVEALAD---ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYD 233 (430)
T ss_pred HHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccch
Confidence 8888999999998743 46799999999998 78999999999 58998752 48899999999999999999863
Q ss_pred c-cccc--cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 173 N-AQVG--LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 173 ~-~~~~--~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
- .... ..+...+. .. |++.+..|+++.| |+|+||+++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p----G~RlG~iv~~ 277 (430)
T PLN00145 234 HLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVP----GWRLGWIATC 277 (430)
T ss_pred hhccCCCCccchhhhcccCcEEEEeccccccCCC----CeeEEEEEEe
Confidence 1 1111 11111111 12 5555566766655 9999999984
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=148.24 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=131.3
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
...+|..+++.++++.+++++|.+ ..+..++|+++..+++.++. +++|.|+++++.|+++...+...|.++
T Consensus 80 ~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG~~a~~~~~~~l~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~ 150 (397)
T PRK06939 80 RFICGTQDLHKELEEKLAKFLGTE-DAILYSSCFDANGGLFETLL--------GKEDAIISDALNHASIIDGVRLCKAKR 150 (397)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCC-cEEEEcChHHHHHHHHHHhC--------CCCCEEEEEhhhhHHHHHHHHhcCCce
Confidence 346799999999999999999987 45667778776655544432 689999999999888777778888888
Q ss_pred EEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC---
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC--- 179 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~--- 179 (302)
+.++. .|++++++.++++ +.++++|+..+. |.+|.+. ++++|.++|+++|+++|+|+++..+.....
T Consensus 151 ~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~-~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~ 224 (397)
T PRK06939 151 YRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA-PLPEICDLADKYDALVMVDDSHAVGFVGENGRG 224 (397)
T ss_pred EEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCC
Confidence 87764 5899999988742 226777776543 5689888 799999999999999999999843321110
Q ss_pred ---CCC-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 ---RPG-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ---~p~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..+ ..+.|++++++||+|+ ||++|++++++++++.+
T Consensus 225 ~~~~~~~~~~~~i~~~S~sK~~~------g~r~G~v~~~~~~~~~l 264 (397)
T PRK06939 225 TVEHFGVMDRVDIITGTLGKALG------GASGGYTAGRKEVIDWL 264 (397)
T ss_pred HHHHcCCCCCCcEEEEECHHHhC------ccCceEEEeCHHHHHHH
Confidence 001 1246899999999884 46789999988776655
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=156.71 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
.+.|.|+.++++||.+.+.+.+++++.++.++++++. ++||+|++++..|-+....+.+.|+++++++...
T Consensus 206 ~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~--------~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~ 277 (755)
T PRK15029 206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRN 277 (755)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEeccccc
Confidence 5899999999999999988877777788878777765 7899999999999888888889999999997542
Q ss_pred -C---CCCC-----HHHHHHHHhccCCCeE--------EEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc-
Q psy7357 114 -D---GTID-----FSDLETKVKKNKETLS--------CLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ- 175 (302)
Q Consensus 114 -~---g~iD-----~~~l~~~i~~~~~~t~--------~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~- 175 (302)
. +.++ ++.++++|+++ |.++ +|++++|+++|++. |+++|+++||++|++++||+|+....
T Consensus 278 ~~Gi~~~i~~~~~~~e~i~~~l~~~-p~~k~~~~~~~~avvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhGah~~ 355 (755)
T PRK15029 278 RYGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_pred ccCCccCCCccccCHHHHHHHHHhC-chhhhccccCceEEEEECCCCcceee-CHHHHHHHHHhcCCeEEEECccccccc
Confidence 1 3455 99999999866 3344 89999999999999 89999999999999999999974221
Q ss_pred -cc-cC--CCC-----c-cCCc-EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 176 -VG-LC--RPG-----D-YGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 176 -~~-~~--~p~-----~-~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
.. ++ .+- . .|+| +++-|+||+|+.- -+..+|-++.
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-----TQaS~LHv~~ 401 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-----SQASYIHVRE 401 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcccch-----hhhhhheeCC
Confidence 11 11 111 2 6899 9999999999732 1455666554
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=146.78 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++.+|++..++..++|+.. +..++++.+. +++ ++|++++|.|+.+...++..|++++.+|.++++
T Consensus 60 ~~l~~~~a~~~g~~~~~I~~~~Gs~e--~i~~~~~~~~-----~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~ 132 (351)
T PRK01688 60 KAVIENYAAYAGVKPEQVLVSRGADE--GIELLIRAFC-----EPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNW 132 (351)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHH--HHHHHHHHhc-----CCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCC
Confidence 68888999999999888888888752 2223333332 455 899999999988888888999999999998778
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccccccCCC---CccCCcEE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQVGLCRP---GDYGSDVS 189 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~~~~~~p---~~~gaDiv 189 (302)
.+|+++++++++ ++++|+++|| |+||.+. +.+++.++++. .+.++++|+++. .+....+. .....+++
T Consensus 133 ~~d~~~l~~~~~----~~~lv~l~nPnNPTG~~~-~~~~l~~l~~~~~~~~~vivDEay~-~f~~~~s~~~~~~~~~n~i 206 (351)
T PRK01688 133 QLDLPAIADNLD----GVKVVYVCSPNNPTGNLI-NPQDLRTLLELTRGKAIVVADEAYI-EFCPQASLAGWLAEYPHLV 206 (351)
T ss_pred CCCHHHHHHhcc----CCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchh-hcCCCCChHHHHhhCCCEE
Confidence 899999999873 6789999999 5999987 56666666543 267899999862 11110010 01112444
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.. ||++.+|+.|.|+|++++++++++.+..
T Consensus 207 v~r---SfSK~~glaGlRiGy~i~~~~~i~~l~~ 237 (351)
T PRK01688 207 ILR---TLSKAFALAGLRCGFTLANEEVINLLLK 237 (351)
T ss_pred EEe---cchHhhcCHHHHHhHHhCCHHHHHHHHh
Confidence 442 4444444558999999999887766543
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-16 Score=148.79 Aligned_cols=175 Identities=16% Similarity=0.218 Sum_probs=127.0
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH
Q psy7357 22 PFIPQDQARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 22 py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~ 98 (302)
.|.| .+|..++++.+.+.+.+-.| ++..++..++|+ ++...++.++. ++||+|++++|.|+.+...
T Consensus 103 ~Y~~---~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--------~pGd~Vlv~~P~y~~y~~~ 171 (462)
T PLN02187 103 SYGP---GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA--------RPNANILLPRPGFPHYDAR 171 (462)
T ss_pred CCCC---CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCCccHHHH
Confidence 4554 67888888888877776555 455677777776 44433333332 6899999999999988878
Q ss_pred HHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 99 AQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~ 173 (302)
+...|.+++.++..+ +..+|+++|+++++ +++++|+++|| |++|.+- +++++|.++|+++|+++|+|.++.-
T Consensus 172 ~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~---~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~ 248 (462)
T PLN02187 172 AAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD---ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDR 248 (462)
T ss_pred HHHcCCEEEEEeCccccCCccCHHHHHHhcC---CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 889999999999853 46899999999987 78899999999 5999873 2589999999999999999998632
Q ss_pred -cccc--cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 174 -AQVG--LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 174 -~~~~--~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.... ..+...+. .. |++.+..|+|+.| |+|+||+++.
T Consensus 249 l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~p----GlRiG~~v~~ 291 (462)
T PLN02187 249 TIFGDNPFVSMGKFASIVPVLTLAGISKGWVVP----GWKIGWIALN 291 (462)
T ss_pred cccCCCCceeHHHhccCCcEEEEecchhhcCCc----cceeEEEEec
Confidence 1111 10111111 12 4555567776655 9999999984
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=141.93 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
.+...++++.+++.+|.+.+ +..++|+.|...++.++. .++||+|+++++.|.++...+...|++++.++++
T Consensus 30 ~~~~~~~e~~la~~~g~~~~-v~~~sgt~al~~~l~~~~-------~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 30 GGFTRRCQQWLEQRFGSAKV-LLTPSCTAALEMAALLLD-------IQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CHHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHhC-------CCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 35678899999999999764 345566665433333321 1679999999999888888888999999999998
Q ss_pred CCC-CCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCccCCcEEE
Q psy7357 113 KDG-TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDYGSDVSH 190 (302)
Q Consensus 113 ~~g-~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~gaDiv~ 190 (302)
+++ .+|+++++++++ +++++|+++++ +|... |+++|.++|+++|+++|.|+++..+.. .-...+.+ .|+.+
T Consensus 102 ~~~~~~d~~~le~~i~---~~tk~i~~~~~--~G~~~-~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~-~~~~~ 174 (375)
T PRK11706 102 PDTMNIDETLIEAAIT---PKTRAIVPVHY--AGVAC-EMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTI-GHIGC 174 (375)
T ss_pred CCcCCcCHHHHHHhcC---CCCeEEEEeCC--CCCcc-CHHHHHHHHHHcCCEEEEECccccccccCCeeeecC-cCEEE
Confidence 764 789999999998 78899998864 68877 799999999999999999999854431 11122333 48888
Q ss_pred eCCC--cccC
Q psy7357 191 LNLH--KTFC 198 (302)
Q Consensus 191 ~~~h--K~l~ 198 (302)
+|.| |.++
T Consensus 175 ~Sf~~~K~l~ 184 (375)
T PRK11706 175 FSFHETKNYT 184 (375)
T ss_pred EeCCCCcccc
Confidence 8877 8775
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=146.53 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=130.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|.. ..++..++|+ ++...++.++. ++||+|+++++.|+.+...++..|++
T Consensus 66 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 137 (386)
T PRK07550 66 VEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA--------GAGDEVILPLPWYFNHKMWLDMLGIR 137 (386)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc--------CCCCEEEEcCCCCcchHHHHHhcCCE
Confidence 5788899999999998887753 4566667776 44433333332 68999999999998888888899999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.++.++ +..+|+++++++++ +++++|++++| |++|...+ ++++|+++|+++|+++|+|.++.. .... .
T Consensus 138 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~ 214 (386)
T PRK07550 138 PVYLPCDEGPGLLPDPAAAEALIT---PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGA 214 (386)
T ss_pred EEEEecCCCcCCCCCHHHHHHHhc---ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCC
Confidence 99999974 34679999999998 67888999999 48997631 589999999999999999998631 1000 0
Q ss_pred C-CCC---ccCC-cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 C-RPG---DYGS-DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~-~p~---~~ga-Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. ... +.+. .+++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 215 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~i~~~~~~~~~~~ 259 (386)
T PRK07550 215 PHDLFADPDWDDTLVHLYSFSKSYALT----GHRVGAVVASPARIAEIE 259 (386)
T ss_pred CcchhhCCCccccEEEEecchhhccCc----ccceEeeecCHHHHHHHH
Confidence 0 010 1122 25566778877654 789999999876665443
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=144.88 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-H---HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-S---AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~---~~~~g~~v~~i 109 (302)
...++++++++++.|.+. .+...+|..+...++.++. ++||+|+++++.|+.+.. . ....+.++..+
T Consensus 52 pt~~~L~~~lA~l~g~~~-~i~~~sg~~Ai~~~l~~l~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~v 122 (386)
T PRK08045 52 PTRDVVQRALAELEGGAG-AVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122 (386)
T ss_pred ccHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEe
Confidence 467889999999999754 4455666665544444432 689999999999875332 2 22345577666
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+ ..|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++.... ...|.++++|+
T Consensus 123 d-----~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~-di~~I~~ia~~~g~~vivDeay~~~~--~~~pl~~gaDi 191 (386)
T PRK08045 123 D-----QGDEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREAGAVSVVDNTFLSPA--LQNPLALGADL 191 (386)
T ss_pred C-----CCCHHHHHHhcc---cCCeEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCccc--cCCchhhCCCE
Confidence 4 268999999997 78999999999 5899998 89999999999999999999874332 34677889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.+++|+++++ ++-..|+++++ +++.+++
T Consensus 192 vv~S~tK~l~G~---~d~~~G~vi~~~~~~~~~l 222 (386)
T PRK08045 192 VLHSCTKYLNGH---SDVVAGVVIAKDPDVVTEL 222 (386)
T ss_pred EEeecceeccCC---CCceeEEEEeCcHHHHHHH
Confidence 999999999733 22336877775 4554443
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=146.35 Aligned_cols=171 Identities=14% Similarity=0.122 Sum_probs=126.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCc-ccH---HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHG-TNP---ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg-~~~---~~~~~~g~ 104 (302)
++-......++++.+++++|.+.+ +..++|..+..+++.++. ++||+|+++.+.|+ ++. ..++..|.
T Consensus 40 ~r~~~p~~~~L~~~lA~l~g~~~~-v~~~sG~~ai~~~l~al~--------~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~ 110 (376)
T PRK06460 40 SREANPTVLELTKKIVELENAEMG-VAFSSGMGAISTTALALL--------KPGNSVLVHRDMFGRSYRFFTDYLKNWGV 110 (376)
T ss_pred eCCCCccHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence 444456788999999999999765 445677766544444443 68999999987664 332 34567899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.+ |.+.+++.++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...+..
T Consensus 111 ~v~~~~~~-----~~~~l~~~~~---~~tklV~l~sp~NPtG~v~-d~~~I~~la~~~g~~vivDea~~~~~--~~~~l~ 179 (376)
T PRK06460 111 NVDASNPG-----SDNIIEKAKS---KRYDVVFVENITNPLLRVV-DITELSKVCKENGSILIVDATFSTPI--NQKPLE 179 (376)
T ss_pred EEEEECCC-----CHHHHHHhcC---CCceEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcCccc--cCChhh
Confidence 99888764 2344555554 78999999999 5899998 89999999999999999999874322 223445
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++|+++.+++|+|+. .++.++|++++++++++++.
T Consensus 180 ~~~divv~S~sK~l~G---~~~~~~G~~~~~~~l~~~l~ 215 (376)
T PRK06460 180 LGADIVVHSASKFLAG---HNDVIAGLAAGYGKLLNVID 215 (376)
T ss_pred cCCCEEEeecceeccC---CCCceEEEEecCHHHHHHHH
Confidence 6799999999999862 23356899998887766553
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=145.53 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++++|++..++..++|++.... .+++..+ ++||+|+++.+.|..+...++..|.+++.+|.++++
T Consensus 59 ~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~--~~~~~~~-----~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (352)
T PRK03321 59 AVELRAALAEHLGVPPEHVAVGCGSVALCQ--QLVQATA-----GPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDH 131 (352)
T ss_pred HHHHHHHHHHHhCcCHHHEEECCCHHHHHH--HHHHHhc-----CCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCC
Confidence 466788899999988767777888753212 1222221 679999999888777777788899999999997678
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCc-ccccccC-CC---CccCCc
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANM-NAQVGLC-RP---GDYGSD 187 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~-~~~~~~~-~p---~~~gaD 187 (302)
.+|+++++++++ +++++|++++| |++|.+. +.+++.++|++ +|+++++|+++. ....... .+ .+...+
T Consensus 132 ~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T PRK03321 132 THDLDAMAAAIT---DRTRLIFVCNPNNPTGTVV-TPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN 207 (352)
T ss_pred CCCHHHHHHhhc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence 899999999997 68889999999 5999998 79999999987 589999999863 1111110 10 011124
Q ss_pred E-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 V-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 i-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+ ++.+..|+|+.| |.|+|++++++++++.+.
T Consensus 208 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~~ 239 (352)
T PRK03321 208 VVVLRTFSKAYGLA----GLRVGYAVGHPEVIAALR 239 (352)
T ss_pred EEEEecchHHhhhH----HHhhhhhcCCHHHHHHHH
Confidence 4 445566766544 789999999887776654
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.9e-16 Score=146.89 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=131.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+++.+.+|.+ .. ++..++|++ +...++.++. ++||.|++++|.|+.+...++..|.
T Consensus 70 ~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 141 (403)
T PRK08636 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT--------NPGDVAIVPDPAYPIHSQAFILAGG 141 (403)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 6899999999999998888854 34 577788874 3323333322 6899999999999988888899999
Q ss_pred EEEEeecCC--CCCCCHHH----HHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-c
Q psy7357 105 SVEPVSVRK--DGTIDFSD----LETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-A 174 (302)
Q Consensus 105 ~v~~i~~~~--~g~iD~~~----l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~ 174 (302)
+++.+|++. +..+|+++ ++++++++++++++|++++| ||+|.+- +.+++|.++|+++++++|.|.++.. .
T Consensus 142 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 142 NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred EEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 999999853 35788875 46666554578999999998 6999872 2589999999999999999998631 1
Q ss_pred cccc--CCCCcc--CCc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVGL--CRPGDY--GSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~~--~~p~~~--gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.... .+.... ..| |.+.+..|+|+.| |.|+|++++++++++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~iv~~~~li~~~~ 271 (403)
T PRK08636 222 FDGYKTPSILEVEGAKDVAVESYTLSKSYNMA----GWRVGFVVGNKKLVGALK 271 (403)
T ss_pred cCCCCCCChhcCCCccccEEEEEecccccCCc----cceeeeeeCCHHHHHHHH
Confidence 1111 111111 123 3456677777655 899999999887766543
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=152.69 Aligned_cols=183 Identities=13% Similarity=0.061 Sum_probs=135.2
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee--------eEeeCchHHHHHHHHHHHHHHH-HhhcCC--CCCEEEEcCCCCccc
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI--------SFQPNSGAQGEYAGLRAIQCYH-QAQDAH--HRNVCLIPVSAHGTN 95 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~--------~~~~~~Ga~a~~a~l~a~~~~~-~~~g~~--~~d~Vlv~~~~hg~~ 95 (302)
+.+.+..++-.++.+++++++|++.. -+..++|+++++.++.+.|... +..+.. ++-+|++|+..|.+.
T Consensus 115 ~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv 194 (490)
T PLN02880 115 ITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSAL 194 (490)
T ss_pred ccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHH
Confidence 45677888889999999999999853 3445566788777777777532 222211 233677888899888
Q ss_pred HHHHHhCCCE---EEEeecCC--CCCCCHHHHHHHHhcc---CCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEE
Q psy7357 96 PASAQMAGMS---VEPVSVRK--DGTIDFSDLETKVKKN---KETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 96 ~~~~~~~g~~---v~~i~~~~--~g~iD~~~l~~~i~~~---~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~lli 166 (302)
...+...|+. ++.||+|+ ++.+|+++|+++|++. ...+.+|+.+-.+ .+|.+. |+++|+++|+++|+++|
T Consensus 195 ~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD-pl~eI~~i~~~~~iwlH 273 (490)
T PLN02880 195 QKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD-PLLELGKIAKSNGMWFH 273 (490)
T ss_pred HHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC-cHHHHHHHHHHcCCEEE
Confidence 8888888884 88999975 5689999999999742 1234566666654 689999 79999999999999999
Q ss_pred EecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 167 LDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 167 vD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
||+|+..+..... -.+-.++|.++.+.|||+..|+ +.|++++++
T Consensus 274 VDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~-----~~g~llvr~ 322 (490)
T PLN02880 274 VDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNF-----DCSLLWVKD 322 (490)
T ss_pred EehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCc-----cEEEEEEeC
Confidence 9998743322110 1233578999999999999774 578899884
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-16 Score=145.12 Aligned_cols=169 Identities=13% Similarity=0.126 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|++..++..++|++. +...+++.+. ++||+|++++|.|+.+...++..|.+++.+|.+ ++.
T Consensus 67 ~~Lr~aia~~~~~~~~~I~vt~Gs~e--~i~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~~ 138 (366)
T PRK01533 67 TTLRQTIANKLHVKMEQVLCGSGLDE--VIQIISRAVL-----KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN-NGV 138 (366)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHH--HHHHHHHHhc-----CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CCC
Confidence 46778888888998888888888742 2222333222 688999999999888888889999999999985 456
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHH---HHHhCCEEEEecCCcc-ccc-ccCC----CCccCC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCEL---IHEHGGQVYLDGANMN-AQV-GLCR----PGDYGS 186 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~i---a~~~g~llivD~a~~~-~~~-~~~~----p~~~ga 186 (302)
+|+++|+++++ +++++|+++|| |+||.+. +.+++.++ |++++ ++++|.++.- ... ...+ .....-
T Consensus 139 ~d~~~l~~~~~---~~~~~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T PRK01533 139 YDLDEISSVVD---NDTKIVWICNPNNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKN 213 (366)
T ss_pred cCHHHHHHHhC---cCCcEEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCC
Confidence 99999999987 67899999999 5999986 45555554 44555 6678988631 100 0000 011112
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
-|++.|..|+|+. .|.|+||+++++++++.+.
T Consensus 214 vi~~~SfSK~~~l----~GlRiG~~i~~~~~~~~l~ 245 (366)
T PRK01533 214 ILVLRTFSKAYGL----ASFRVGYAVGHEELIEKLN 245 (366)
T ss_pred EEEEeCchHHhcC----hHHHHhHHhCCHHHHHHHH
Confidence 3556656666654 4899999999887766553
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=142.53 Aligned_cols=164 Identities=17% Similarity=0.211 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++.++++..++..++|++ +. .++++.+. ++||+|++++|.|+.+...++..|++++.+|.++++
T Consensus 63 ~~lr~aia~~~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 134 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQVFVGNGSDEVL---AHAFLAFF-----NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDF 134 (353)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCC
Confidence 5788889999998887788888874 33 22333322 689999999999887888888999999999998778
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh-CCEEEEecCCcccccccC--C-CCccCCcEEE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH-GGQVYLDGANMNAQVGLC--R-PGDYGSDVSH 190 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~-g~llivD~a~~~~~~~~~--~-p~~~gaDiv~ 190 (302)
.+|++++++ ++++|+++|| |++|.+. +.+++.++++.+ ++++++|.++. .+..-. . .....-.+++
T Consensus 135 ~~d~~~l~~-------~~~~v~~~~P~NPtG~~~-~~~~~~~l~~~~~~~~livDe~y~-~~~~~~~~~~~~~~~~~i~~ 205 (353)
T PRK05387 135 SIDVEDYLR-------PNGGIIFPNPNAPTGIAL-PLAEIERILAANPDSVVVIDEAYV-DFGGESAIPLIDRYPNLLVV 205 (353)
T ss_pred CCCHHHHHh-------cCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCcEEEEeCccc-ccCCcchHHHHhhCCCEEEE
Confidence 899998863 2367889999 5999998 689999998875 99999999863 121110 0 0112235777
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.+|+|+.| |.|+|++++++++.+.+
T Consensus 206 ~S~SK~~~~~----GlR~G~~~~~~~~~~~l 232 (353)
T PRK05387 206 QTFSKSRSLA----GLRVGFAIGHPELIEAL 232 (353)
T ss_pred EehhHhhcch----hhhceeeecCHHHHHHH
Confidence 7777877655 89999999987766554
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=146.46 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH----hCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ----MAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~----~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|..|..+++.++. +++|+|+++.+.|+....... ..|+++.++
T Consensus 58 pt~~~Le~~lA~l~g~~~~-l~~ssG~~Ai~~al~al~--------~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~ 128 (425)
T PRK06084 58 PTNDVLEQRVAALEGGVGA-LAVASGMAAITYAIQTIA--------EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFA 128 (425)
T ss_pred chHHHHHHHHHHHhCCCce-eEehhHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEE
Confidence 4467899999999997654 456778877655555544 678999999888774433322 356777766
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++.... ...|.++|+|+
T Consensus 129 d~-----~d~e~le~ai~---~~tklV~lesp~NPtG~v~-dl~~I~~la~~~~i~vVvD~a~a~~~--~~~p~~~gaDi 197 (425)
T PRK06084 129 AH-----DDIAALEALID---ERTKAVFCESIGNPAGNII-DIQALADAAHRHGVPLIVDNTVATPV--LCRPFEHGADI 197 (425)
T ss_pred CC-----CCHHHHHHHhc---cCCcEEEEeCCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcccc--cCChhhcCCCE
Confidence 64 48999999998 78999999998 6999998 89999999999999999999875332 34677889999
Q ss_pred EEeCCCcccCCC
Q psy7357 189 SHLNLHKTFCIP 200 (302)
Q Consensus 189 v~~~~hK~l~~p 200 (302)
++.|++|+|+.+
T Consensus 198 vv~S~tK~l~G~ 209 (425)
T PRK06084 198 VVHSLTKYIGGH 209 (425)
T ss_pred EEECchhccccc
Confidence 999999999854
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=143.78 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|..|..+++.++. ++||+|+++++.|+.+... ....++++..+
T Consensus 51 p~~~~le~~lA~l~g~~~v-~~~~gg~~Ai~~~l~all--------~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~ 121 (382)
T TIGR02080 51 PTRDLLQQALAELEGGAGA-VVTNTGMSAIHLVTTALL--------GPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFV 121 (382)
T ss_pred chHHHHHHHHHHHhCCCcE-EEEcCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEE
Confidence 4578899999999996543 445556666645554443 6899999999998754332 23345677665
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|-..|+|+
T Consensus 122 d~-----~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~-dl~~I~~la~~~g~~vvvD~a~~~~~--~~~pl~~gaDi 190 (382)
T TIGR02080 122 DQ-----GDEQALRAALA---QKPKLVLIETPSNPLLRVV-DIAKICHLAKAVGAVVVVDNTFLSPA--LQNPLALGADL 190 (382)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCE
Confidence 42 48999999998 78999999999 5899998 89999999999999999999874332 23455678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.+++|+++.+ ++...|++.++ +++.+++
T Consensus 191 vv~S~sK~l~G~---~~~~~G~i~~~~~~~~~~l 221 (382)
T TIGR02080 191 VLHSCTKYLNGH---SDVIAGAVIAKDPQVAEEL 221 (382)
T ss_pred EEeecceeccCC---CCceeEEEEeCCHHHHHHH
Confidence 999999998743 23458888775 4554444
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=143.81 Aligned_cols=178 Identities=13% Similarity=0.095 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHhCCC---eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYD---KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
...+..+++..+++++|++ .+.+ ..+|+ .+...++.+++. ++ .+++.|++|...|.+....+...|++++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~-v~~~Tg~al~laL~alr~----~~-~~gd~VI~p~~th~S~~kAi~~~G~~pv 176 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFV-VPLATGMSLSLCLSALRH----KR-PKAKYVIWPRIDQKSCIKAISTAGFEPR 176 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEE-ECCHHHHHHHHHHHHcCC----cC-CCCCEEEEECcChHHHHHHHHHcCCeEE
Confidence 5678899999999999998 3333 33344 334333333321 00 1578999999988877778889999999
Q ss_pred Eeec--C-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCce--eccccHHHHHHHHHHhCCEEEEecCCcccccc---cC
Q psy7357 108 PVSV--R-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFG--VFEENITDVCELIHEHGGQVYLDGANMNAQVG---LC 179 (302)
Q Consensus 108 ~i~~--~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G--~~~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~ 179 (302)
.+++ + ++..+|+++|+++|++..+++.++++.+|++++ ... |+++|+++|+++|+++|+|+|+...... +.
T Consensus 177 ~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~d-dL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~ 255 (444)
T TIGR03531 177 VIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPD-DIEEIAKICANYDIPHIVNNAYGLQSNKYMELI 255 (444)
T ss_pred EeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchh-CHHHHHHHHHHcCCEEEEECcCcCcChhhhhhh
Confidence 9995 3 357899999999998432266777788887544 566 8999999999999999999998532111 11
Q ss_pred CC-Ccc-CCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 180 RP-GDY-GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 180 ~p-~~~-gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
.+ ... .+|++++++||+|..| |+ .|+++++ +++.+.+
T Consensus 256 ~~g~~~Grad~vv~s~hK~l~~p----g~-Gg~I~~~d~el~~~i 295 (444)
T TIGR03531 256 NKAIKVGRVDAVVSSTDKNFMVP----VG-GAIIYSFDENFIQEI 295 (444)
T ss_pred hccccccCCCeEEEeCccCCCCC----CC-EEEEEECCHHHHHHH
Confidence 11 223 3799999999999876 22 5667674 4555544
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=141.75 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=118.6
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTI 117 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~i 117 (302)
++++.+++.+|++..++..++|++. +....++.+. +++|.|+++++.|+.+...++..|++++.+|.++++.+
T Consensus 75 ~lr~~ia~~~~~~~~~i~~t~G~~~--~l~~~~~~~~-----~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~ 147 (371)
T PRK05166 75 ALREAIAARTGVPADRIILGNGSED--LIAVICRAVL-----RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGF 147 (371)
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHH--HHHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCC
Confidence 6888899999998777878888742 2122222221 68899999999988777788899999999999877889
Q ss_pred CHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcc-cccc-cCCC----CccCCc-
Q psy7357 118 DFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMN-AQVG-LCRP----GDYGSD- 187 (302)
Q Consensus 118 D~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~-~~~~-~~~p----~~~gaD- 187 (302)
|++++++.++ +++++|+++|| |+||.+. +.+++.++++. .++++++|.++.- .... ..++ .+.+.+
T Consensus 148 ~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~v 223 (371)
T PRK05166 148 DLDALCAAVA---RAPRMLMFSNPSNPVGSWL-TADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPW 223 (371)
T ss_pred CHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCE
Confidence 9999999997 67788999999 5999987 56666666654 4788999998631 1111 0010 011123
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
|++.+..|+|+ +.|.|+|++++ ++++.+.+
T Consensus 224 i~i~SfSK~~~----l~GlRiG~~i~~~~~l~~~~ 254 (371)
T PRK05166 224 IVLRTFSKAYG----LAGLRVGYGLVSDPELVGLL 254 (371)
T ss_pred EEEeechHhhh----cchhheeeeecCCHHHHHHH
Confidence 45555556555 45899999876 45555444
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=144.57 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=129.0
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|++ +...++.++. ++||+|+++++.|+.+...++..|.+
T Consensus 65 ~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~vlv~~p~y~~~~~~~~~~g~~ 136 (384)
T PRK06348 65 SGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL--------DPGDEVIIHEPYFTPYKDQIEMVGGK 136 (384)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCCcchHHHHHHcCCE
Confidence 678888888888888776664 456777777774 3323333322 68899999999998888888889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.+|.++ +..+|+++|+++++ +++++|++++| |++|.+- +++++|.++|+++|++++.|.++.- .... .
T Consensus 137 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 213 (384)
T PRK06348 137 PIILETYEEDGFQINVKKLEALIT---SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDF 213 (384)
T ss_pred EEEecCCcCcCCcCCHHHHHHhhC---cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCc
Confidence 99998743 34689999999987 67889999999 5899873 2589999999999999999998631 1111 0
Q ss_pred CC---CCc-cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CR---PGD-YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~---p~~-~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+ ... .+-.|++.+..|+++.| |.|+|++.+++++.+.+
T Consensus 214 ~~~~~~~~~~~~vi~~~SfSK~~~l~----GlRiG~~v~~~~~~~~~ 256 (384)
T PRK06348 214 VPMATLAGMPERTITFGSFSKDFAMT----GWRIGYVIAPDYIIETA 256 (384)
T ss_pred cchhhcCCCcCcEEEEecchhccCCc----cccceeeecCHHHHHHH
Confidence 01 111 12235666667766644 89999999988776654
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=143.92 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=122.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|+ ++...++.++. ++||+|+++++.|+.+...+...|++
T Consensus 72 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 143 (409)
T PLN02656 72 TVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA--------RPGANILLPRPGFPIYELCAAFRHLE 143 (409)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh--------CCCCeEEEeCCCCCcHHHHHHHcCCE
Confidence 578888888888877776554 44566666676 43323333322 68999999999998887778889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccccccC
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQVGLC 179 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~~~~~ 179 (302)
++.+|+++ ++.+|+++++++++ +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++. .......
T Consensus 144 ~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 220 (409)
T PLN02656 144 VRYVDLLPEKGWEVDLDAVEALAD---QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNP 220 (409)
T ss_pred EEEEeCCCcCCCCCCHHHHHHHhc---cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC
Confidence 99999853 34799999999987 77899999999 5999872 269999999999999999999863 1111100
Q ss_pred -CC-CccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 180 -RP-GDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 180 -~p-~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.+ .... .. |++.|..|+|+.| |.|+|+++++
T Consensus 221 ~~~~~~~~~~~~vi~~~SfSK~f~~p----GlRiG~~i~~ 256 (409)
T PLN02656 221 FVPMGVFGSIVPVLTLGSLSKRWIVP----GWRLGWFVTT 256 (409)
T ss_pred cccHHHhcccCcEEEEcccchhccCc----ceeEEEEEEe
Confidence 11 1111 12 4555567776655 9999999984
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=141.81 Aligned_cols=169 Identities=18% Similarity=0.122 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++++|++..++..++|++..+.. .++.+. +++|.|+++++.|..+...+...|.+++.+|. .++.
T Consensus 70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~--~~~~l~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~ 141 (367)
T PRK02731 70 FELKAALAEKFGVDPERIILGNGSDEILEL--LARAYL-----GPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYG 141 (367)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHH--HHHHhc-----CCCCEEEEecCCHHHHHHHHHHcCCeEEEecc-cCCC
Confidence 578889999999987777778887532122 122221 57899999999887777677889999999998 4567
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCccccc-ccCCC----CccCCc-
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQV-GLCRP----GDYGSD- 187 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~-~~~~p----~~~gaD- 187 (302)
+|++++++.++ +++++|++++| |++|.+. +.+++.++++.. |+++++|.++..... ....+ .+...+
T Consensus 142 ~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 217 (367)
T PRK02731 142 HDLDAMLAAVT---PRTRLVFIANPNNPTGTYL-PAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNV 217 (367)
T ss_pred CCHHHHHHHhC---CCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCE
Confidence 89999999997 68899999999 5999998 689999998875 899999998631110 00000 011224
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++.+..|+|+ ..|.|+|++++++++.+.+
T Consensus 218 i~~~S~SK~~g----~~G~RiG~l~~~~~~~~~l 247 (367)
T PRK02731 218 VVTRTFSKAYG----LAGLRVGYGIAPPEIIDAL 247 (367)
T ss_pred EEEeeehHhhc----CcccceeeeeCCHHHHHHH
Confidence 44445556554 4488999999998766554
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=146.93 Aligned_cols=180 Identities=16% Similarity=0.253 Sum_probs=130.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
..|++ ++|..++++++.+.+.+.+| ++..++..++|++ +...++.++. ++||.|++++|.|+.+
T Consensus 88 ~~y~~---~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~--------~pGD~Vlv~~P~Y~~~ 156 (496)
T PLN02376 88 ANFQD---YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA--------DPGDVFLIPSPYYAAF 156 (496)
T ss_pred hccCC---CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC--------CCCCEEEECCCCccch
Confidence 44655 78999999999999988877 5666787788874 3433333332 6899999999999888
Q ss_pred HHHHH-hCCCEEEEeecCC--CCCCCHHHHHHHHhc---cCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEE
Q psy7357 96 PASAQ-MAGMSVEPVSVRK--DGTIDFSDLETKVKK---NKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVY 166 (302)
Q Consensus 96 ~~~~~-~~g~~v~~i~~~~--~g~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~lli 166 (302)
...+. ..|++++.+|++. +..+|++++++++.+ ...++++|+++|| ||+|.+- +.+++|.++|+++|+++|
T Consensus 157 ~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI 236 (496)
T PLN02376 157 DRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLV 236 (496)
T ss_pred HHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 77665 5899999999963 457899999877532 1257899999999 5999873 257888999999999999
Q ss_pred EecCCcccc-cc--cCCC----Ccc-----CCc--EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 167 LDGANMNAQ-VG--LCRP----GDY-----GSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 167 vD~a~~~~~-~~--~~~p----~~~-----gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
.|.++.... .. ..+. .+. ..| +++.+.+|+|+.| |.|+|++++.+
T Consensus 237 ~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glp----GlRvG~li~~~ 295 (496)
T PLN02376 237 VDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLP----GFRVGIVYSFN 295 (496)
T ss_pred EEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCC----cceEEEEEECC
Confidence 999874221 11 1110 000 113 2356778888755 89999999853
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=148.81 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=132.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--eeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
+-|.+ ++|..++++.+.+.+.+..|.+ ..++..++|++ +...++.++. .++||.|++++|.|+.+..
T Consensus 109 ~~Y~~---~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-------~~~gD~Vlv~~P~y~~y~~ 178 (481)
T PTZ00377 109 GAYTD---SAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLI-------GDPSDGVMIPIPQYPLYSA 178 (481)
T ss_pred cCcCc---ccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-------cCCCCEEEECCCCchhHHH
Confidence 34554 6899999999998888776754 45777777874 3433333321 1479999999999988888
Q ss_pred HHHhCCCEEEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEec
Q psy7357 98 SAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~ 169 (302)
.++..|.+++.+|++++ ..+|+++|++++++. .+++++|+++|| |+||.+- +.+++|+++|+++|+++|.|.
T Consensus 179 ~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 179 AITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred HHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeh
Confidence 88999999999998753 478999999999731 127899999999 6999873 258999999999999999999
Q ss_pred CCcc-cc-c--ccCCC----CccC------CcE-EEeCCCcccCCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 170 ANMN-AQ-V--GLCRP----GDYG------SDV-SHLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 170 a~~~-~~-~--~~~~p----~~~g------aDi-v~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
++.- .. . ...+. ..+. ..+ ++.+.+|+|. ++.|+|+||+.+ ++++++.+
T Consensus 259 ~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~---~~~GlRiG~~~~~~~p~~li~~l 325 (481)
T PTZ00377 259 VYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGII---GECGRRGGYFELTNIPPEVREQI 325 (481)
T ss_pred hhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccc---cCCcCceEEEEEeCCCHHHHHHH
Confidence 8631 11 1 01010 0111 124 4455677642 334999999987 66666554
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=144.06 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=129.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..+++.++.+.+.+..|. +.. ++..++|+ +|...++.++. +++|+|+++++.|+.+...++..|+
T Consensus 64 ~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~ 135 (387)
T PRK07683 64 NAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL--------EPGTEVILPAPIYPGYEPIIRLCGA 135 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC--------CCCCEEEEcCCCccchHHHHHHcCC
Confidence 478888888888888766675 344 56666665 44433332222 5789999999998888888889999
Q ss_pred EEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-ccc-c
Q psy7357 105 SVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVG-L 178 (302)
Q Consensus 105 ~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~-~ 178 (302)
+++.++.+++ ..+|++++++.++ +++++|++++| |++|... .++++|.++|+++|+++|+|.++..- ... .
T Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 212 (387)
T PRK07683 136 KPVFIDTRSTGFRLTAEALENAIT---EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPH 212 (387)
T ss_pred EEEEeecCcccCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCc
Confidence 9999998754 4679999999987 67899999999 5999862 25899999999999999999986411 111 0
Q ss_pred CCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+.. ..+-.+++.+..|.|+.| |.|+|++++++++++.+.
T Consensus 213 ~~~~~~~~~~~~vi~~~s~SK~~~~p----GlRiG~i~~~~~l~~~~~ 256 (387)
T PRK07683 213 TSIAHFPEMREKTIVINGLSKSHSMT----GWRIGFLFAPSYLAKHIL 256 (387)
T ss_pred CChhhccCCcCCeEEEeeccccccCc----cceeEEEEcCHHHHHHHH
Confidence 0111 112246677777777655 899999999987766654
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=148.10 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=134.8
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee--------eEeeCchHHHHHHHHHHHHHHHHh-hcC--CCCCEEEEcCCCCccc
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI--------SFQPNSGAQGEYAGLRAIQCYHQA-QDA--HHRNVCLIPVSAHGTN 95 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~--------~~~~~~Ga~a~~a~l~a~~~~~~~-~g~--~~~d~Vlv~~~~hg~~ 95 (302)
+.+.+..++-.++.+++++++|++.. -+..++|++|++.++.+.|..... .+. .++-.|++|+..|.+.
T Consensus 163 ~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv 242 (539)
T PLN02590 163 LTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSF 242 (539)
T ss_pred ccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHH
Confidence 56788888999999999999999852 344566777777777777653321 111 1233677788899887
Q ss_pred HHHHHhCCC---EEEEeecCC--CCCCCHHHHHHHHhccC---CCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEE
Q psy7357 96 PASAQMAGM---SVEPVSVRK--DGTIDFSDLETKVKKNK---ETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 96 ~~~~~~~g~---~v~~i~~~~--~g~iD~~~l~~~i~~~~---~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~lli 166 (302)
...+...|+ .++.||+|. ++.+|+++|+++|++.. -.+.+|+.+-.+ .+|.++ |+++|+++|+++|+|+|
T Consensus 243 ~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD-pl~~Ia~i~~~~g~WlH 321 (539)
T PLN02590 243 RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD-PLVPLGNIAKKYGIWLH 321 (539)
T ss_pred HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCeEE
Confidence 788888888 599999984 57899999999997421 134566666654 689999 79999999999999999
Q ss_pred EecCCcccccccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 167 LDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 167 vD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
||+|+.-+...... .+-..+|-++.+.|||+..|+ ..|++++++
T Consensus 322 VDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~-----~cg~llvr~ 370 (539)
T PLN02590 322 VDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQ-----TCSPLWVKD 370 (539)
T ss_pred EecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCc-----CEEEEEecC
Confidence 99986322211110 123458999999999999875 567888885
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-15 Score=142.46 Aligned_cols=245 Identities=18% Similarity=0.218 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC--
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~-- 113 (302)
+.++++.+++++|.+.+ +.+.+|+.|+..+++++. ++||.| ++++.+.++.......|.+++.+++++
T Consensus 55 ~~~Leeaia~~~g~~~v-v~t~~Gt~Al~la~~al~--------~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~ 124 (431)
T cd00617 55 FYDLEDAVQDLFGFKHI-IPTHQGRGAENILFSILL--------KPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAH 124 (431)
T ss_pred HHHHHHHHHHHHCCCeE-EEcCCHHHHHHHHHHHhC--------CCCCEE-ccCCcccchHHHHHhCCCEeEEEeccccc
Confidence 35777888999999875 456677787755555543 689976 677777777778889999999999863
Q ss_pred --------CCCCCHHHHHHHHhcc-CCCeEEEEEecCC-Cc-eecc--ccHHHHHHHHHHhCCEEEEecCCccc--cc--
Q psy7357 114 --------DGTIDFSDLETKVKKN-KETLSCLMITYPS-TF-GVFE--ENITDVCELIHEHGGQVYLDGANMNA--QV-- 176 (302)
Q Consensus 114 --------~g~iD~~~l~~~i~~~-~~~t~~V~i~~Pn-~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~~--~~-- 176 (302)
.|.+|+++|+++|+++ .+++++|++++|| ++ |..- +++++|+++|+++|+++|.|+++... ..
T Consensus 125 ~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~ 204 (431)
T cd00617 125 DAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIK 204 (431)
T ss_pred ccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhh
Confidence 3569999999999843 2348889999985 55 7652 25889999999999999999996532 11
Q ss_pred ----cc--CCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCccc-C--------CCCcch
Q psy7357 177 ----GL--CRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPLS-S--------IDSSIG 234 (302)
Q Consensus 177 ----~~--~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~~-~--------~~~~l~ 234 (302)
+. .++.+ -..|.++.+++|.+.. |-+|++++++ ++++++....+. . +...+.
T Consensus 205 ~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~------~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~ 278 (431)
T cd00617 205 EREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLV------NIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDME 278 (431)
T ss_pred cccccccCCCHHHHHHHhhccCCEEEEEeecCCCC------ccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHH
Confidence 11 11211 1478889888887764 4468999986 476665432211 0 111111
Q ss_pred hhhHHHHhh--Hh-hHHH-H-HHHHH-HHh-cccccccccCCCcceeEEEEEEecccccc---CCCCHHHHHHHhhc
Q psy7357 235 AVSAAHYGS--AS-ILPI-S-WAYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKS---ANIEAVDIAKRLMD 301 (302)
Q Consensus 235 ~~~a~~~~~--~~-~~~~-~-~~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~---~g~~~~~~~~~l~~ 301 (302)
+++.+..-. .. +..+ . ..|+. .|. .|++++.+ .. .|-+.+|.+.+... .+.+..++++.|+.
T Consensus 279 A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~G~~v~~P-~G----gh~v~~d~~~~~~~~~~~~~~~~~la~~L~~ 350 (431)
T cd00617 279 ALAQGLREAVEEDYLRHRVEQVRYLGDRLDEAGVPIVEP-AG----GHAVFIDAREFLPHIPQEQFPAQALAAELYL 350 (431)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCCccCC-Cc----ceEEEEEhHHhcCCCCcccCcHHHHHHHHHH
Confidence 221111110 00 0000 0 03443 566 58887643 34 79999998865221 12457777777753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-15 Score=141.02 Aligned_cols=166 Identities=18% Similarity=0.191 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
...++++.+++++|.+.. +..++|+.|...++.++. .++||+|+++++.|..+...+...|++++.+++++
T Consensus 30 ~~~~le~~la~~~g~~~~-v~~~sgt~al~~~l~al~-------~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~ 101 (380)
T TIGR03588 30 TVPAFEEALAEYVGAKYA-VAFNSATSALHIACLALG-------VGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPD 101 (380)
T ss_pred hHHHHHHHHHHHHCCCeE-EEEcCHHHHHHHHHHHcC-------CCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCC
Confidence 467899999999999875 445677776644444431 15799999999998777777788999999999965
Q ss_pred CCCCCHHHHHHHHhccC-CCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC----cE
Q psy7357 114 DGTIDFSDLETKVKKNK-ETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS----DV 188 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga----Di 188 (302)
++.+|++++++.+++++ ++|++|+++++ +|... |+++|+++|+++|+++|+|++|..+.. + .....|. |+
T Consensus 102 ~~~~d~~~l~~~i~~~~~~~t~~v~~~~~--~G~~~-~~~~i~~l~~~~~~~lI~D~a~a~g~~-~-~~~~~g~~~~~d~ 176 (380)
T TIGR03588 102 TGNIDEDALEKKLAAAKGKLPKAIVPVDF--AGKSV-DMQAIAALAKKHGLKIIEDASHALGAE-Y-GGKPVGNCRYADA 176 (380)
T ss_pred cCCcCHHHHHHHhhcccCCCceEEEEeCC--CCccC-CHHHHHHHHHHcCCEEEEECCCcccCc-c-CCEeCCCccccce
Confidence 57899999999997321 36888888764 68888 799999999999999999999865432 1 1122233 99
Q ss_pred EEeCCC--cccCCCCCCCCCcceeEEEe-CCCCC
Q psy7357 189 SHLNLH--KTFCIPHGGGGPGMGPIGVK-SHLAP 219 (302)
Q Consensus 189 v~~~~h--K~l~~p~~~gGp~~G~l~~~-~~l~~ 219 (302)
.++|+| |++.. +.+|+++++ +++.+
T Consensus 177 ~~~S~~~~K~~~~------~~GG~v~~~~~~~~~ 204 (380)
T TIGR03588 177 TVFSFHPVKIITT------AEGGAVTTNDEELAE 204 (380)
T ss_pred EEEecCCCCcccc------cCceEEEECCHHHHH
Confidence 999988 66652 345777765 34433
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=133.50 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR- 112 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~- 112 (302)
.+..+-+.+++++|||.+. ++.|+ .+-++++.++. +++|-|++...+|-+....++..|.+|..+|-.
T Consensus 62 pI~~F~~dlaeFlg~D~~R--~t~GARe~KfavMhal~--------~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg 131 (382)
T COG1103 62 PIKDFLEDLAEFLGMDEVR--VTAGAREAKFAVMHALC--------KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTG 131 (382)
T ss_pred cHHHHHHHHHHHhCCceee--ecccchhhHHHHHHHhc--------cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCC
Confidence 5677778899999999865 45677 66667777765 689999999899876667788999999999954
Q ss_pred -CCCCCCHHHHHHHHhccC----CCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 113 -KDGTIDFSDLETKVKKNK----ETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 113 -~~g~iD~~~l~~~i~~~~----~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
++..++++...+.|++.. +.+++.++++|. .+|.+. |.+.++++|+++|+++++.+|+.++.+.. +-.+.|+
T Consensus 132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~-Dakkva~ic~e~gvPlllN~AYt~Grmpv-s~ke~g~ 209 (382)
T COG1103 132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLA-DAKKVAKICREYGVPLLLNCAYTVGRMPV-SGKEIGA 209 (382)
T ss_pred CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCch-hhHHHHHHHHHcCCceEeecceeeccccc-cccccCC
Confidence 256789999888886432 347888899985 789999 89999999999999999999998777764 5567899
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|++++|.||++... | .+|++..++++.+.+
T Consensus 210 DFiVgSGHKsmAAs----~-PiGvl~~~eE~ae~V 239 (382)
T COG1103 210 DFIVGSGHKSMAAS----A-PIGVLAMSEEWAEIV 239 (382)
T ss_pred CEEEecCccchhcc----C-CeeEEeehhHHHHHH
Confidence 99999999998753 3 489999999887754
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=142.81 Aligned_cols=170 Identities=17% Similarity=0.178 Sum_probs=123.0
Q ss_pred cccHHHHHHHHHHHHHHHhC--------CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITG--------YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--------~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
.+|..++++.+.+.+.+.++ ++..++..++|+ ++...++.++. +++|+|++++|.|..+...+
T Consensus 74 ~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~vlv~~P~y~~~~~~~ 145 (412)
T PTZ00433 74 TVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC--------DEGDNILVPAPGFPHYETVC 145 (412)
T ss_pred CCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCcccHHHHH
Confidence 57888888888877776543 445567777776 44433333322 68899999999998888888
Q ss_pred HhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 100 QMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 100 ~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
+..|++++.+|.++ ++.+|++++++.++ +++++|+++|| |++|..- +++++|.++|+++|+++++|.++.--
T Consensus 146 ~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~ 222 (412)
T PTZ00433 146 KAYGIEMRFYNCRPEKDWEADLDEIRRLVD---DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGM 222 (412)
T ss_pred HHcCCEEEEEecCccccCcCCHHHHHHHhc---cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 99999999999864 45799999999987 67899999999 5899752 26889999999999999999986311
Q ss_pred -ccc--cCCCCcc---CCcEEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 175 -QVG--LCRPGDY---GSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 175 -~~~--~~~p~~~---gaDiv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
... ..+...+ ..-|++.+..|+|+.| |.|+|++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRlG~~i~ 263 (412)
T PTZ00433 223 VFNGATFTSVADFDTTVPRVILGGTAKNLVVP----GWRLGWLLL 263 (412)
T ss_pred ccCCCCccchhhccCCCceEEEccchhhcCCC----CeeEEEEEE
Confidence 111 0010111 1125566667776654 899999997
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=143.97 Aligned_cols=169 Identities=16% Similarity=0.136 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~ 110 (302)
...++++.++++.|.+. .+...+|..|..+++.++. ++||+|+++++.|+.+... ++..|++++.++
T Consensus 84 t~~~Le~~lA~leg~~~-~iv~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~ 154 (427)
T PRK07049 84 NSEIVEDRLAVYEGAES-AALFSSGMSAIATTLLAFV--------RPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFA 154 (427)
T ss_pred CHHHHHHHHHHHhCCCc-EEEEccHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEe
Confidence 35789999999999875 4556778776655555544 6899999999999877554 356788877776
Q ss_pred cCCCCCCCHHHHHHHHhcc--CCCeEEEEEecC-CCceeccccHHHHHHHHHH------hCCEEEEecCCcccccccCCC
Q psy7357 111 VRKDGTIDFSDLETKVKKN--KETLSCLMITYP-STFGVFEENITDVCELIHE------HGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~--~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~------~g~llivD~a~~~~~~~~~~p 181 (302)
. + .|++++++++++. ++++++|++++| |++|.+. |+++|.+++++ +++++++|.+.... ....|
T Consensus 155 ~---~-~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~-d~~~l~~la~~~~~~~~~~~~vvvDety~~~--~~~~p 227 (427)
T PRK07049 155 D---G-LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLV-DVAAVRRVADAIEARQGHRPIIACDNTLLGP--VFQKP 227 (427)
T ss_pred C---C-CCHHHHHHHHHhhccCCCceEEEEECCCCCCCccc-CHHHHHHHHHHhhhcccCCCEEEEECCcccc--ccCCc
Confidence 2 2 5788888877532 257899999999 5999998 79999999988 78999999874211 12346
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.++++|+++.|++|+++. .+|.++|+++.++++++++.
T Consensus 228 l~~g~divv~S~SK~~gG---~~glr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 228 LEHGADLSVYSLTKYVGG---HSDLVAGAVLGRKALIRQVR 265 (427)
T ss_pred cccCCCEEEEcCceeecC---CCCcEEEEEECCHHHHHHHH
Confidence 677899999999999883 35789999998877766553
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=140.56 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD- 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~- 114 (302)
..++++.+++.++++..++..++|++. +...+++.+ .+++ ++++.|.|..+...++..|.+++.+|.+++
T Consensus 57 ~~~lr~~ia~~~~~~~~~i~it~Ga~~--~l~~~~~~l------~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 57 YRHLHQALARHHQVPASWILAGNGETE--SIFAVVSGL------KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHHhCcChhhEEECCCHHH--HHHHHHHHh------CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEeccccc
Confidence 468888899999998878888888742 222223322 3455 466677776666778899999999998653
Q ss_pred C-CCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCc-ccccc---cCCCCccC
Q psy7357 115 G-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANM-NAQVG---LCRPGDYG 185 (302)
Q Consensus 115 g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~-~~~~~---~~~p~~~g 185 (302)
+ .+| +++++.+. +++++|+++|| |+||... + +++|+++|+++++++|+|.++. ..... ........
T Consensus 128 ~~~~~-~~~~~~~~---~~~k~v~l~~p~NPTG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 202 (356)
T PRK08056 128 GWQLT-DAILEALT---PDLDCLFLCTPNNPTGLLP-ERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNP 202 (356)
T ss_pred CCCcc-HHHHHhcc---CCCCEEEEeCCcCCCCCCC-CHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCC
Confidence 3 445 45666665 78899999999 5999875 4 8889999999999999999852 11000 00011233
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
..+++.|.+|+|+.| |.|+|+++++ +++++.+.
T Consensus 203 ~~i~~~S~SK~~~~~----G~RiG~~v~~~~~~~~~l~ 236 (356)
T PRK08056 203 HLWVLRSLTKFYAIP----GLRLGYLVNSDDAAVARMR 236 (356)
T ss_pred CEEEEEechhhccCc----chhheeeecCCHHHHHHHH
Confidence 468888889988866 8999999985 45544443
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=144.67 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=127.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCC----ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCE--EEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD----KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNV--CLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~----~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~--Vlv~~~~hg~~~~~~~ 100 (302)
.+|..++++.+.+.+.+.+|.+ .. ++..++|++ +...++.++. ++||. |++++|.|..+...++
T Consensus 63 ~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~--------~~gd~~~vlv~~P~y~~~~~~~~ 134 (393)
T TIGR03538 63 TKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI--------NPGQAPLVVMPNPFYQIYEGAAL 134 (393)
T ss_pred CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc--------CCCCcceEEecCCCCcchHHHHH
Confidence 6888888888888888876653 33 577777874 3323322222 56764 9999999888888888
Q ss_pred hCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-c
Q psy7357 101 MAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-A 174 (302)
Q Consensus 101 ~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~ 174 (302)
..|.+++.+|++++ ..+|++++++++. +++++|+++|| ||||.+- +.+++|.++|+++|+++|.|.++.. .
T Consensus 135 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 211 (393)
T TIGR03538 135 LAGAEPYFLNCTAENGFLPDFDAVPESVW---RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY 211 (393)
T ss_pred hcCCeEEEeeccccCCCCCCHHHHHHHHh---hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence 99999999999643 3689999999987 67899999999 5999873 1489999999999999999998631 1
Q ss_pred ccc-cCCC------CccCC----c-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 QVG-LCRP------GDYGS----D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~~~-~~~p------~~~ga----D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
... ...+ ...+. . |++.|..|.|+.| |.|+|++++++++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~----GlRvG~~i~~~~l~~~~ 266 (393)
T TIGR03538 212 FDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLP----GLRSGFVAGDAEILKAF 266 (393)
T ss_pred cCCCCCCcCHHHhcccccccccccEEEEecchhhcCCc----ccceEEEecCHHHHHHH
Confidence 110 0000 11111 1 5666666766544 89999999988776654
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=143.66 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=129.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.. .. ++..++|++ +....+.++. ++||+|+++++.|+.+...++..|.
T Consensus 66 ~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 137 (395)
T PRK08175 66 SRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL--------DHGDTVLVPNPSYPIHIYGAVIAGA 137 (395)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCC
Confidence 6788888888888888776753 33 577778874 3322222222 6899999999999888777788999
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-ccccc--
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVGL-- 178 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~~-- 178 (302)
+++.+|.++++ .++++++++++++.+++++|++++| |++|.+-+ .+++|.++|+++|+++|+|.++.. .....
T Consensus 138 ~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~ 216 (395)
T PRK08175 138 QVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA 216 (395)
T ss_pred eEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCC
Confidence 99999987643 3588999988754467899999998 59998741 358999999999999999998631 11110
Q ss_pred CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ ++..+..+++.+..|+|+.| |.|+|++++++++++.+.
T Consensus 217 ~~~~~~~~~~~~~i~~~S~SK~~g~p----GlRiG~~~~~~~l~~~~~ 260 (395)
T PRK08175 217 PSIMQVPGAKDVAVEFFTLSKSYNMA----GWRIGFMVGNPELVSALA 260 (395)
T ss_pred cchhcCCCcccCEEEEeeccccccCc----chhheeeeCCHHHHHHHH
Confidence 01 11112225567777777654 889999999887777654
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=142.83 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
.-..++++.++++.+ ...+...+|+.|+.+++.++. ++||+||++++.|+.+... .+..|++++.+
T Consensus 51 p~~~~Le~~lA~l~~--~~~v~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v 120 (366)
T PRK07582 51 PTWRALEAALGELEG--AEALVFPSGMAAITAVLRALL--------RPGDTVVVPADGYYQVRALAREYLAPLGVTVREA 120 (366)
T ss_pred ccHHHHHHHHHHHcC--CCEEEECCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEE
Confidence 346788889999883 345567788876645554442 6899999998887665443 34579999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.++++ + .+. +++++|++++|| ++|.+. |+++|+++||++|+++++|+++....+ ..|.++++|+
T Consensus 121 ~~~~~~-------~-~~~---~~t~lV~le~p~NPtg~v~-di~~I~~~a~~~g~~lvVD~t~~~~~~--~~p~~~g~Di 186 (366)
T PRK07582 121 PTAGMA-------E-AAL---AGADLVLAETPSNPGLDVC-DLAALAAAAHAAGALLVVDNTTATPLG--QRPLELGADL 186 (366)
T ss_pred CCCChH-------H-Hhc---cCceEEEEECCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCCCCccc--cCchhcCCcE
Confidence 875321 1 233 678999999995 888788 899999999999999999998643322 3466789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
++.++||+++.| +|.++|+++++ +++.+++.
T Consensus 187 vv~S~sK~l~G~---~g~~~G~v~~~~~~l~~~l~ 218 (366)
T PRK07582 187 VVASDTKALTGH---SDLLLGYVAGRDPELMAAVE 218 (366)
T ss_pred EEecccccccCC---CCeeEEEEEcCcHHHHHHHH
Confidence 999999998743 24457999885 55555543
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=144.79 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=130.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+++.+|.+ ..++..++|+ +|...++.++. ++||.|+++++.|+.+.......+.+
T Consensus 69 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~vl~~~p~y~~y~~~~~~~~~~ 140 (402)
T PRK06107 69 VNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL--------EAGDEVIIPAPYWVSYPDMVLANDGT 140 (402)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCCCcCHHHHHHHcCCE
Confidence 5788899999999999888874 3467777776 54433333322 68999999999988888777788888
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHh-CCEEEEecCCcc-cccc-
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEH-GGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~-g~llivD~a~~~-~~~~- 177 (302)
++.++.+. ++.+|+++++++++ +++++|++++| |++|... +++++|+++|+++ |+++|+|.++.. ....
T Consensus 141 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~ 217 (402)
T PRK06107 141 PVIVACPEEQGFKLTPEALEAAIT---PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE 217 (402)
T ss_pred EEEecCCcccCCCCCHHHHHhhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC
Confidence 88888863 34689999999987 68899999999 5999773 1578889999998 999999987631 1111
Q ss_pred -cCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -LCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+ ++...--+++.+.+|+|+.| |.|+|++++++++.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~~~~~~~~~~~~ 264 (402)
T PRK06107 218 PTPHLLAAAPELRDRVLVTNGVSKTYAMT----GWRIGYAAGPADLIAAIN 264 (402)
T ss_pred CCCCHHHhCcCccCCEEEEeccchhhcCc----ccceeeeecCHHHHHHHH
Confidence 111 11111135556668888765 789999999887766554
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-15 Score=141.27 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=122.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|++ +. .++++.+. +++|.|++++|.|+.+...++..|.+
T Consensus 73 ~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~v~v~~P~y~~~~~~~~~~g~~ 144 (409)
T PLN00143 73 TGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAA---EIIIKVLA-----RPEANILLPRPGFPDVETYAIFHHLE 144 (409)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHH---HHHHHHHc-----CCCCEEEEcCCCCcCHHHHHHHcCCE
Confidence 578888888888887776554 445677777774 33 22333322 68999999999998888888899999
Q ss_pred EEEeecCC-C-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccccc-
Q psy7357 106 VEPVSVRK-D-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGL- 178 (302)
Q Consensus 106 v~~i~~~~-~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~- 178 (302)
++.++.++ + ..+|+++|+++++ +++++++++|| |+||.+- +.+++|.++|+++++++|.|.++.- .....
T Consensus 145 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~ 221 (409)
T PLN00143 145 IRHFDLLPEKGWEVDLDAVEAIAD---ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKP 221 (409)
T ss_pred EEEEeccCCCCCcCCHHHHHHhcc---cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCC
Confidence 99999853 3 4689999999887 67899999999 5999873 2588899999999999999998731 11111
Q ss_pred CCC-CccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 179 CRP-GDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 179 ~~p-~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..| ..+. .. |++.+.+|+|+. .|.|+||++++
T Consensus 222 ~~~~~~~~~~~~vi~~~SfSK~f~~----pGlRvG~~v~~ 257 (409)
T PLN00143 222 FVPMGLFASIVPVITLGSISKRWMI----PGWGLGWLVTC 257 (409)
T ss_pred CcchhhhcccCcEEEEccchhhcCC----CccceEEEEee
Confidence 011 1111 12 455555666554 49999999984
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=144.30 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+.+ +.+++|+.|+.+++.++. .+++.|+++...|.+....+...|.+++.++
T Consensus 99 ~~~~~le~~la~~~g~~~~-~~~~sG~~An~~~l~~l~--------~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~--- 166 (407)
T PRK07179 99 SPKPQFEKKLAAFTGFESC-LLCQSGWAANVGLLQTIA--------DPNTPVYIDFFAHMSLWEGVRAAGAQAHPFR--- 166 (407)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEECCcCHHHHHHHHHCCCeEEEec---
Confidence 5778889999999999876 557788887766655543 5688999988887766656667788776554
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC------CCC-ccC
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC------RPG-DYG 185 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~------~p~-~~g 185 (302)
..|+++|++++++ .++++|++.+| |++|.+. |+++|.++|+++|+++|+|++|..+..+.. ..+ ..+
T Consensus 167 --~~d~~~l~~~l~~--~~~~lV~v~~v~n~tG~i~-pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~ 241 (407)
T PRK07179 167 --HNDVDHLRRQIER--HGPGIIVVDSVYSTTGTIA-PLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSR 241 (407)
T ss_pred --CCCHHHHHHHHHh--cCCeEEEECCCCCCCCccc-cHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCC
Confidence 2699999999973 24678888887 5899999 799999999999999999999864332110 111 124
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++.+.||+++ +++|++++++++++.+
T Consensus 242 vdi~~~S~sK~~g-------~~~G~l~~~~~~~~~~ 270 (407)
T PRK07179 242 VHFITASLAKAFA-------GRAGIITCPRELAEYV 270 (407)
T ss_pred CCEEEeechHhhh-------ccCeEEEeCHHHHHHH
Confidence 6999999999885 3589999988776555
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=145.03 Aligned_cols=175 Identities=15% Similarity=0.047 Sum_probs=120.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
.+|..++++.+.+++.+-.+ +..++..++|++ +...++.++. ++||.|++++|.|+.+...++..|++++
T Consensus 120 ~~g~~~lr~~ia~~~~~~~~-~~~~Iiit~G~~~al~~~~~~l~--------~pgd~Vlv~~P~y~~~~~~~~~~g~~~~ 190 (431)
T PRK15481 120 APVSPELHAWAARWLRDDCP-VAFEIDLTSGAIDAIERLLCAHL--------LPGDSVAVEDPCFLSSINMLRYAGFSAS 190 (431)
T ss_pred cCCCHHHHHHHHHHHhhccC-CcCeEEEecCcHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCeEE
Confidence 35555555544444433222 223566677774 3323333322 6899999999999888888999999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEe-cC-CCceeccc--cHHHHHHHHHHh-CCEEEEecCCc-ccccccCCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMIT-YP-STFGVFEE--NITDVCELIHEH-GGQVYLDGANM-NAQVGLCRP 181 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~-~P-n~~G~~~~--di~~I~~ia~~~-g~llivD~a~~-~~~~~~~~p 181 (302)
.+|++++| +|+++|+++++ +++++++++ || ||||..-+ ..++|.++|+++ +++++.|.++. .......++
T Consensus 191 ~v~~~~~g-~~~~~l~~~~~---~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~ 266 (431)
T PRK15481 191 PVSVDAEG-MQPEKLERALA---QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSV 266 (431)
T ss_pred eeccCCCC-CCHHHHHHHHh---cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCC
Confidence 99997665 89999999997 577888887 88 59998741 346999999999 99999998763 111111111
Q ss_pred C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 182 G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 182 ~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. ...--|++.|.+|+|+ | |.|+||+++++++.+.+
T Consensus 267 ~~~~~~~vi~~~SfSK~~~-~----GlRiG~~i~~~~~~~~~ 303 (431)
T PRK15481 267 IPQTTQRWALIRSVSKALG-P----DLRLAFVASDSATSARL 303 (431)
T ss_pred CcCCCCCEEEEeeeccccC-C----CceeEEEeCCHHHHHHH
Confidence 1 1111266666777776 5 89999999988776665
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-15 Score=138.77 Aligned_cols=162 Identities=17% Similarity=0.144 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH---hC-CCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ---MA-GMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~---~~-g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|..|..+++ .+. ++||+||++...||....... .. ++++.
T Consensus 54 p~~~~le~~lA~leg~~~~-v~~~sG~aAi~~~l-~~l--------~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~-- 121 (364)
T PRK07269 54 PTRAKLEETLAAIESADYA-LATSSGMSAIVLAF-SVF--------PVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFT-- 121 (364)
T ss_pred ccHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHH-HHh--------CCCCEEEEecCCcCchHHHHHHHHhcCcEEEE--
Confidence 4578999999999998765 34566766553333 222 689999999998876655322 11 22221
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
...|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|++..... ..+|-..|+|+
T Consensus 122 -----~~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~-di~~I~~la~~~gi~vvvD~t~~~~~--~~~pl~~gaDi 190 (364)
T PRK07269 122 -----YANTEEELIAAIE---EDTDIVYIETPTNPLMVEF-DIEKVAKLAHAKGAKVIVDNTFYSPI--YQRPIELGADI 190 (364)
T ss_pred -----ecCCHHHHHHhcC---cCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCcE
Confidence 2258999999998 88999999999 5899888 89999999999999999999853222 34677789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|.+|+++.+- ..-.|+++++ +++.+++
T Consensus 191 vv~S~tK~l~g~~---d~~gG~v~~~~~~l~~~~ 221 (364)
T PRK07269 191 VLHSATKYLSGHN---DVLAGVVVTNDLELYEKL 221 (364)
T ss_pred EEecCceeccCCC---cccceEEEeCcHHHHHHH
Confidence 9999999998431 1225778876 4555544
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=145.94 Aligned_cols=180 Identities=12% Similarity=0.180 Sum_probs=123.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhC--CCeeeEe--eCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITG--YDKISFQ--PNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~~~~--~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
+.|.| ++|..++++.+.+++.+..+ .+..++. ...|+ .|...++++++.+. ++||+|++++|.|+.+
T Consensus 66 ~~Y~~---~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-----~~Gd~Vlv~~P~y~~~ 137 (404)
T PTZ00376 66 KEYLP---IEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-----PAGTTVYVSNPTWPNH 137 (404)
T ss_pred CCCCC---CCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-----CCCCEEEEcCCCchhH
Confidence 44555 68998888888887755433 2333444 23444 44434444333332 6899999999999989
Q ss_pred HHHHHhCCCEEEEeecC-C-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecC
Q psy7357 96 PASAQMAGMSVEPVSVR-K-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~-~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a 170 (302)
...++..|.+++.+|.. + +..+|++.+++++.+++++++++++++| ||||..- +++++|.++|+++|++++.|.+
T Consensus 138 ~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~ 217 (404)
T PTZ00376 138 VNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMA 217 (404)
T ss_pred HHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehh
Confidence 88999999999999983 2 4679999999999754355677888999 6999872 2688999999999999999998
Q ss_pred Cc-ccccc-------cCCCCccCCc-EEEeCCCcccCCCCCCCCCcceeEE
Q psy7357 171 NM-NAQVG-------LCRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIG 212 (302)
Q Consensus 171 ~~-~~~~~-------~~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~ 212 (302)
+. ..... +........+ |++.|.+|+|+.| |.|+|++.
T Consensus 218 Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~----GlRvG~~~ 264 (404)
T PTZ00376 218 YQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLY----GERIGALH 264 (404)
T ss_pred hcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccc----ccccceEE
Confidence 62 11110 0000111113 5555566766654 99999984
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=137.11 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
..++++.+++.+|++..++..++|++. +..++++.+. .++ ++|+++++.|+.+...++..|.+++.+|.+.
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~--~l~~~~~~~~-----~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 133 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDE--AIDLLVRALC-----VPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDG 133 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHH--HHHHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCC
Confidence 468888999999998878888888742 2222233221 456 7899999988777777788999999999842
Q ss_pred -CC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCc-ccccc-cCCCCccCC
Q psy7357 114 -DG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANM-NAQVG-LCRPGDYGS 186 (302)
Q Consensus 114 -~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~-~~~~~-~~~p~~~ga 186 (302)
++ .+|++++.+.+.+ +++++|++++| |+||.+. +.+++.++++. +++++|+|.++. ..... .....+...
T Consensus 134 ~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~ 210 (364)
T PRK04781 134 ADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAI-ALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYD 210 (364)
T ss_pred ccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCC
Confidence 33 5799998766532 67899999999 5999987 67777777764 478999999863 11100 000111122
Q ss_pred cE-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 187 DV-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 187 Di-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++ ++.+..|+|+ +.|.|+||+++++++++.+..
T Consensus 211 ~vi~~~SfSK~~g----l~GlRvGy~v~~~~l~~~l~~ 244 (364)
T PRK04781 211 NLAVLRTLSKAHA----LAAARIGSLIANAELIAVLRR 244 (364)
T ss_pred CEEEEecChhhcc----cccceeeeeeCCHHHHHHHHh
Confidence 34 4444555554 459999999999877766543
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-15 Score=137.78 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 30 RGYEQLIGELETDLCEITGY--DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
+|..++++.+.+++.+..|. +..++..++|++.. ..++++.+. +++|.|+++.|.|..+...++..|.+++
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~--l~~~~~~~~-----~~gd~v~v~~P~y~~~~~~~~~~g~~~~ 137 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEI--LQQLLQAFG-----GPGRTALGFVPSYSMHPIIARGTHTEWV 137 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHH--HHHHHHHhc-----CCCCEEEEeCCChHHHHHHHHhcCCeeE
Confidence 35556666666666665554 45678888887422 222233222 6899999999998888888888999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccccCCCC---
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVGLCRPG--- 182 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~p~--- 182 (302)
.++.+++..+|++++++++++ .++++|++++| |++|.+. +.+++.++++..++++|+|.++.. ...+.....
T Consensus 138 ~~~~~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~ 214 (368)
T PRK03317 138 EGPRAADFTLDVDAAVAAIAE--HRPDVVFLTSPNNPTGTAL-PLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL 214 (368)
T ss_pred EcccCCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence 998766678999999999974 35678899999 5899998 699999999988999999998741 111111100
Q ss_pred ccCCcE-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 DYGSDV-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 ~~gaDi-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
....++ ++.+.+|.|+. .|.|+|++++++++++.+.
T Consensus 215 ~~~~~~i~~~SfSK~~g~----~GlRiG~~~~~~~~~~~l~ 251 (368)
T PRK03317 215 PEYPRLVVSRTMSKAFAF----AGGRLGYLAAAPAVVDALR 251 (368)
T ss_pred HhCCCEEEEEechhhhcc----chhhhhhhhCCHHHHHHHH
Confidence 111244 44455666654 4899999999887766554
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=141.54 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..| .+..++..++|+ +|...++.++. +++|.|+++++.|+.+...++..|.+
T Consensus 69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 140 (398)
T PRK08363 69 SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------DPGDEILIPGPSYPPYTGLVKFYGGV 140 (398)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCCE
Confidence 46777777777777766556 344566666665 44433333332 68999999999998888888889999
Q ss_pred EEEe-ecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPV-SVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i-~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.+ +.+++ ..+|+++++++++ +++++|++++| |++|... .++++|.++|+++|+++|+|.++.. .... .
T Consensus 141 ~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~ 217 (398)
T PRK08363 141 PVEYRTIEEEGWQPDIDDIRKKIT---EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKH 217 (398)
T ss_pred EEEeccccccCCcCCHHHHHhhCC---cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcc
Confidence 8888 55544 4689999999997 78899999998 5899874 1489999999999999999998631 1111 0
Q ss_pred CCCCcc--CCcE-EEeCCCcccCCCCCCCCCcceeEEE--eCCCC
Q psy7357 179 CRPGDY--GSDV-SHLNLHKTFCIPHGGGGPGMGPIGV--KSHLA 218 (302)
Q Consensus 179 ~~p~~~--gaDi-v~~~~hK~l~~p~~~gGp~~G~l~~--~~~l~ 218 (302)
...... ...+ ++.+.+|+|+.| |.|+|++++ +++++
T Consensus 218 ~~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~ 258 (398)
T PRK08363 218 VSPGSLTKDVPVIVMNGLSKVYFAT----GWRLGYIYFVDPEGKL 258 (398)
T ss_pred cCHHHcCcCCcEEEEecchhccCCc----cceEEEEEEeCcHHHH
Confidence 010111 1134 455667776654 899999998 44443
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=138.36 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=126.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..|..+...++++.++++++.+. .+..++|+++.++++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 56 ~~g~~~~~~~l~~~la~~~~~~~-~i~~~~G~~~~~~~l~~~~--------~~gd~v~~~~~~~~~~~~~~~~~g~~~~~ 126 (360)
T TIGR00858 56 VSGNSPLHEELEEELAEWKGTEA-ALLFSSGYLANVGVISALV--------GKGDLILSDALNHASLIDGCRLSGARVRR 126 (360)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCC-EEEECchHHHHHHHHHHhC--------CCCCEEEEEccccHHHHHHHHhcCCceEE
Confidence 35656778889999999999654 5667778765544333322 67899999999988887778888999988
Q ss_pred eecCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-C-----
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC-R----- 180 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-~----- 180 (302)
++. +|++++++.++++. +++++|++.++ |++|... |+++|.++|+++|+++|+|+++........ .
T Consensus 127 ~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 200 (360)
T TIGR00858 127 YRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIA-PLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEH 200 (360)
T ss_pred ecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCc-CHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHh
Confidence 774 68999999997532 35788888877 4789888 799999999999999999999753221110 0
Q ss_pred --CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 181 --PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 181 --p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....+.||++.+.+|+|+. ++ |++++++++.+.+
T Consensus 201 ~~~~~~~~~i~i~s~sK~~~~------~g-G~~~~~~~~~~~~ 236 (360)
T TIGR00858 201 FGLKPEPVDIQVGTLSKALGS------YG-AYVAGSQALIDYL 236 (360)
T ss_pred cCCCccCCcEEEEechhhhhc------cC-cEEEcCHHHHHHH
Confidence 0123568999999998863 22 8888887766554
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-14 Score=134.83 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=119.6
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+.. .| ++..++..++|+ ++...++.++. ++||+|+++++.|+.+...++..|.+
T Consensus 65 ~~g~~~lr~~ia~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 135 (397)
T PRK07568 65 SQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMMAIC--------DPGDEILVPEPFYANYNGFATSAGVK 135 (397)
T ss_pred CCCCHHHHHHHHHHHHH-hCCCCCcceEEEcCChHHHHHHHHHHhc--------CCCCEEEEecCCCccHHHHHHHcCCE
Confidence 46766666666655542 33 455566666665 44423332222 67899999999888777777889999
Q ss_pred EEEeecCC-CCC--CCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-
Q psy7357 106 VEPVSVRK-DGT--IDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 106 v~~i~~~~-~g~--iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~- 177 (302)
++.++.+. +|. .|+++++++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|.++.- ....
T Consensus 136 ~~~v~~~~~~g~~~~~~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~ 212 (397)
T PRK07568 136 IVPVTTKIEEGFHLPSKEEIEKLIT---PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL 212 (397)
T ss_pred EEEeecCcccCCCCCCHHHHHHhcC---ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC
Confidence 99999863 442 36899999987 68899999999 58998742 589999999999999999998631 1111
Q ss_pred -cCCCCcc---CCc-EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCC
Q psy7357 178 -LCRPGDY---GSD-VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPF 220 (302)
Q Consensus 178 -~~~p~~~---gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~ 220 (302)
..+...+ ..+ +++.|.+|+|+.| |.|+|+++++ +++++.
T Consensus 213 ~~~s~~~~~~~~~~~i~~~S~SK~~~~~----G~R~G~~~~~~~~~~~~ 257 (397)
T PRK07568 213 KYTSALSLEGLEDRVIIIDSVSKRYSAC----GARIGCLISKNKELIAA 257 (397)
T ss_pred CccChhhcCCCcCCEEEEecchhhccCC----CcceEEEecCCHHHHHH
Confidence 1111111 112 6666677777654 8999999985 455543
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=136.84 Aligned_cols=166 Identities=19% Similarity=0.179 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~ 108 (302)
-.....+++.+++|.|.+.+.+ ..||..|..++++++. ++||+|++++..|+..... ....|+++.+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~-~~SGmaAi~~~l~~ll--------~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~ 124 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALL-FSSGMAAISAALLALL--------KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTF 124 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-ESSHHHHHHHHHHHHS---------TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEE
T ss_pred cccHHHHHHHHHHhhcccceee-ccchHHHHHHHHHhhc--------ccCCceEecCCccCcchhhhhhhhcccCcEEEE
Confidence 3678899999999999977654 4678776656666554 6799999999888765543 4468999998
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC-CEEEEecCCcccccccCCCCccCC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG-GQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g-~llivD~a~~~~~~~~~~p~~~ga 186 (302)
++. .|+++++++++ ++|++|+++.| |++.-+. |+++|+++||++| ++++||.. ++.....+|-++|+
T Consensus 125 ~d~-----~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~-Dl~~i~~~a~~~g~~~~vVDnT--~atp~~~~pL~~Ga 193 (386)
T PF01053_consen 125 VDP-----TDLEALEAALR---PNTKLVFLESPSNPTLEVP-DLEAIAKLAKEHGDILVVVDNT--FATPYNQNPLELGA 193 (386)
T ss_dssp EST-----TSHHHHHHHHC---TTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECT--TTHTTTC-GGGGT-
T ss_pred eCc-----hhHHHHHhhcc---ccceEEEEEcCCCcccccc-cHHHHHHHHHHhCCceEEeecc--ccceeeeccCcCCc
Confidence 875 48999999999 89999999999 6876777 8999999999999 99999964 55555567889999
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeC--CCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKS--HLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~--~l~~~l 221 (302)
||++.|+.|.+++. +.--+|.+++++ ++.+++
T Consensus 194 Divv~S~TKyl~Gh---sdv~~G~vv~~~~~~~~~~l 227 (386)
T PF01053_consen 194 DIVVHSATKYLSGH---SDVMGGAVVVNGSSELYDRL 227 (386)
T ss_dssp SEEEEETTTTTTTS---SSE-EEEEEESSHHHHHHHH
T ss_pred eEEEeeccccccCC---cceeeEEEEECchhhhhhhh
Confidence 99999999999732 122378888875 454443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=142.91 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhCCCe-eeEeeCchHHH-HHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 37 GELETDLCEITGYDK-ISFQPNSGAQG-EYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~-~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.++++.+++.+|.+. .++..++|++. ...+..++. ++||+|+++++.|..+...++..|++++.+|.+++
T Consensus 66 ~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~--------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~ 137 (356)
T PRK04870 66 AALKAALRAAMGVPAGADVLLGNGSDELIQLLALACA--------KPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD 137 (356)
T ss_pred HHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCC
Confidence 577888889999864 36777888753 322222222 67999999999988777788899999999999877
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCc-ccccc-cCCCCccCCcEEEe
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANM-NAQVG-LCRPGDYGSDVSHL 191 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~-~~~~~-~~~p~~~gaDiv~~ 191 (302)
+.+|+++|++++++ .++++|++++| |++|.+. +.+++.++++..+.++|+|.++. ..... ........--+++.
T Consensus 138 ~~~d~~~l~~~~~~--~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~ 214 (356)
T PRK04870 138 FTLDLPAMLAAIAE--HRPALVFLAYPNNPTGNLF-DDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMR 214 (356)
T ss_pred CCCCHHHHHHHhhc--CCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEe
Confidence 88999999999963 47888999999 5999987 68888888776688999999863 11101 11111222225555
Q ss_pred CCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.+| ++ +.|.|+|++++++++++.+..
T Consensus 215 S~SK-~~----~~GlRiG~~i~~~~~i~~~~~ 241 (356)
T PRK04870 215 TVSK-LG----LAGLRLGYLAGHPAWIAELDK 241 (356)
T ss_pred cchh-hh----hHHHhhhhhhCCHHHHHHHHH
Confidence 5556 44 448999999998877665543
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=135.54 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++++|.+..++..++|++..+..+..+ + .++ +|+++++.|..+...++..|++++.++
T Consensus 50 ~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~--l------~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~------ 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL--L------APG-RVLVLAPTYSEYARAWRAAGHEVVELP------ 114 (330)
T ss_pred HHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH--h------CCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC------
Confidence 6888889999998877777778875332332221 1 455 688889988877778889999998887
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccccccCCC----CccCCcEE
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQVGLCRP----GDYGSDVS 189 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~~~~~p----~~~gaDiv 189 (302)
|++++++.++ ++++|++++| |++|.+.+ .+++|+++|+++|+++|+|.++...... .+. ...+.+++
T Consensus 115 -d~~~l~~~~~----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~i~ 188 (330)
T TIGR01140 115 -DLDRLPAALE----ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD-ASLAPQAARFPGLVV 188 (330)
T ss_pred -CHHHHHhhcc----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc-cchhhHhccCCCEEE
Confidence 8899998885 4568889999 59998851 3777888899999999999987311111 111 11244688
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.+.+|+|+.| |.|+|++++++++++.+..
T Consensus 189 ~~S~SK~~g~~----G~R~G~i~~~~~~~~~l~~ 218 (330)
T TIGR01140 189 LRSLTKFFGLA----GLRLGFVVAHPALLARLRE 218 (330)
T ss_pred EEecchhhcCc----hhhhhheeCCHHHHHHHHh
Confidence 88899988755 7889999999877666543
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-15 Score=146.54 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=129.5
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++.+.+.+.+..|. +..++..++|++ |...++.++. ..++|.|+++.|.|+.+...++..|.+
T Consensus 167 s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~-------~~~gd~Vli~~P~Y~~y~~~~~~~g~~ 239 (534)
T PLN02231 167 SQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RSEKDGILCPIPQYPLYSASIALHGGT 239 (534)
T ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc-------cCCCCEEEEeCCCChhHHHHHHHcCCE
Confidence 799999999999999887674 446777788874 3433333322 136899999999999888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccC---CCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCcc-cc-
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANMN-AQ- 175 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~~-~~- 175 (302)
++.++++++ ..+|+++|++++++.+ .++++|+++|| |+||.+ .+++++|.++|+++|+++|.|.++.- ..
T Consensus 240 ~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~ 319 (534)
T PLN02231 240 LVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYV 319 (534)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence 999999753 4799999999997421 26899999999 699987 22689999999999999999998631 11
Q ss_pred cc--cCC-------CCc--cCCcEE-EeCCCcccCCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 176 VG--LCR-------PGD--YGSDVS-HLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 176 ~~--~~~-------p~~--~gaDiv-~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
.. ..+ ++. ....++ +.|..|+|. ++.|.|+||+.+ ++++.+.+
T Consensus 320 ~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~---g~pGlRiGy~~~~~~~~~l~~~l 377 (534)
T PLN02231 320 PDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYY---GECGKRGGYMEVTGFTSDVREQI 377 (534)
T ss_pred CCCCcccHHHHHhhhccccCCceEEEEeccCcccc---cCCccceEEEEEecCCHHHHHHH
Confidence 00 001 010 011244 445667652 234899999986 44555443
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=140.82 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=125.0
Q ss_pred cccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-hC
Q psy7357 29 ARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-MA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-~~ 102 (302)
.+|..++++++.+.+.+.+| ++..++..++|++ +....+.++. ++||.|++++|.|+.+...+. ..
T Consensus 85 ~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~--------~pGd~Vlv~~P~Y~~~~~~~~~~~ 156 (468)
T PLN02450 85 YHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA--------EPGDAFLLPTPYYPGFDRDLKWRT 156 (468)
T ss_pred CCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC--------CCCCEEEECCCCCCchHHHHhhcC
Confidence 57888888888888887766 3555777888874 3333333332 689999999999988866666 58
Q ss_pred CCEEEEeecCC--CCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 103 GMSVEPVSVRK--DGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 103 g~~v~~i~~~~--~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
|.+++.+|+++ +..+|++++++++++. ..++++|+++|| ||||.+- +.+++|.++|+++|+++|.|.++...
T Consensus 157 g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~ 236 (468)
T PLN02450 157 GVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGT 236 (468)
T ss_pred CcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcccccc
Confidence 99999999863 3467999999988631 237899999999 5999862 25888999999999999999987421
Q ss_pred -ccc--cCCC----Cc-------cCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 175 -QVG--LCRP----GD-------YGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 175 -~~~--~~~p----~~-------~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
... ..+. .. ..-. +++.+..|+|+. .|.|+|+++++++
T Consensus 237 ~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l----~GlRiG~li~~~~ 289 (468)
T PLN02450 237 VFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGL----PGFRVGAIYSNDE 289 (468)
T ss_pred ccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCC----CCccEEEEEECCH
Confidence 111 1010 00 0112 455556666654 4999999999754
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=140.07 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=127.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|..+++.++++++++++|.+. .+..++|+++.++++.++. +++|.|+++++.|+++...+...|.+++.
T Consensus 73 ~~g~~~l~~~l~~~l~~~~g~~~-~i~~~sG~~a~~~a~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~g~~~~~ 143 (385)
T TIGR01825 73 IAGTLRLHEELEEKLAKFKKTEA-ALVFQSGFNTNQGVLSALL--------RKGDIVLSDELNHASIIDGLRLTKATKKI 143 (385)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHhC--------CCCCEEEEEccccHHHHHHHHhcCCceEE
Confidence 67889999999999999999765 4667788876644444432 68899999999988776666677888776
Q ss_pred eecCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc------C-
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL------C- 179 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~------~- 179 (302)
++ .+|++++++.+.++. +++++|++.++ |++|.+. |+++|.++|+++|+++++|+++....... .
T Consensus 144 ~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR01825 144 YK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA-PLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHH 217 (385)
T ss_pred eC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhh
Confidence 54 478999999887432 36788877765 6889998 79999999999999999999974321110 0
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.....+.|+++.+.+|+|+. + +|++++++++++.+
T Consensus 218 ~~~~~~~~i~~~s~sK~~~~------~-gG~~~~~~~~~~~~ 252 (385)
T TIGR01825 218 FGLEDKVDIQVGTLSKAIGV------V-GGYAAGHKELIEYL 252 (385)
T ss_pred cCCCcCCcEEEEeccHHhhc------C-CCEEecCHHHHHHH
Confidence 01124578889999998863 2 28888887766654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=139.82 Aligned_cols=191 Identities=23% Similarity=0.257 Sum_probs=133.8
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhC--CCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITG--YDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
.+-|.| ++|..++.+++.+.+.+-.| .+.. ++.+++|+.+....+..+.. .+++++|++++|.|+.+.
T Consensus 37 ~~~Y~~---~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~------~~~~~~vlv~~P~y~~~~ 107 (363)
T PF00155_consen 37 FLGYPP---PQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK------INPGDTVLVPDPCYPSYI 107 (363)
T ss_dssp CTSSTC---TTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH------SSTTSEEEEEESSSTHHH
T ss_pred cccCCC---chhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc------ccccccceecCCcccccc
Confidence 344544 56777777776666664444 4445 77888888644333322221 157899999999999888
Q ss_pred HHHHhCCCEEEEeecC--CCCCCCHHHHHHHHhccCC---CeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEe
Q psy7357 97 ASAQMAGMSVEPVSVR--KDGTIDFSDLETKVKKNKE---TLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~--~~g~iD~~~l~~~i~~~~~---~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD 168 (302)
..++..|.+++.+|++ .++.+|+++|++.+++.+. ++++|++++| |+||..- +++++|.++|+++|+++++|
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~D 187 (363)
T PF00155_consen 108 EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVD 187 (363)
T ss_dssp HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEE
T ss_pred ccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeee
Confidence 8999999999999975 4678999999999984311 5689999999 5899763 25777777799999999999
Q ss_pred cCCcccccccCC-----C-CccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 169 GANMNAQVGLCR-----P-GDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 169 ~a~~~~~~~~~~-----p-~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.++......-.. . .+.+.+ +++.|++|+|+.| |.|+|++++++++.+.+..
T Consensus 188 e~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~----GlRvG~i~~~~~~~~~l~~ 245 (363)
T PF00155_consen 188 EAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLP----GLRVGYIVAPPELIERLRR 245 (363)
T ss_dssp ETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSG----GGTEEEEEEEHHHHHHHHH
T ss_pred eceeccccCCCccCcccccccccccceeeeecccccccc----ccccccccchhhhhhhhhh
Confidence 987422211000 0 112234 7777777877655 8899999998877776643
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=135.99 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=116.3
Q ss_pred ccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCC-EEEEcCCCCcccHHHHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRN-VCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d-~Vlv~~~~hg~~~~~~~~~g 103 (302)
+|..++++.+.+.+.+.++ ++..++..++|++ +...++.++. .+++ +|++++|.|+.+...++..|
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~--------~~g~~~Vlv~~P~y~~~~~~~~~~g 137 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC--------LGGEGSILVAEPTFSMYGILAQTLG 137 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc--------CCCCCeEEEcCCChHHHHHHHHHcC
Confidence 4655555555554443321 5556788888875 3322222222 3454 89999999988888889999
Q ss_pred CEEEEeecCCC-CCCCHHHHHHHHhcc-CCCeEEEEEecC-CCceeccccHHHHHHHHH-HhCCEEEEecCCcccccccC
Q psy7357 104 MSVEPVSVRKD-GTIDFSDLETKVKKN-KETLSCLMITYP-STFGVFEENITDVCELIH-EHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 104 ~~v~~i~~~~~-g~iD~~~l~~~i~~~-~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~-~~g~llivD~a~~~~~~~~~ 179 (302)
.+++.+|.+++ ..+|+++|++++++. .+++++|+++|| ||||..- +.+++.++++ .+++++|.|.++.- +....
T Consensus 138 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~~~~~iI~De~Y~~-~~~~~ 215 (374)
T PRK02610 138 IPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLPEDILVVIDEAYFE-FSQTT 215 (374)
T ss_pred CEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhccCCcEEEEeccccc-cCccc
Confidence 99999998653 679999999998731 147899999999 5999885 3444444432 14899999998631 11100
Q ss_pred CCC--ccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPG--DYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~--~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+. ....+ |++.|..|+|+.| |.|+||+++++++++.+
T Consensus 216 ~~~~~~~~~~~ivi~SfSK~~g~~----GlRiG~~v~~~~l~~~l 256 (374)
T PRK02610 216 LVGELAQHPNWVILRTFSKAFRLA----AHRVGYAIGHPELIAVL 256 (374)
T ss_pred hHHHHhcCCCEEEEEecchhccCc----ccceeeeecCHHHHHHH
Confidence 010 11123 5556666766554 89999999987776655
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=143.55 Aligned_cols=164 Identities=15% Similarity=0.076 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCe--eeE-eeCchHHHHHHHHHHHHHHHHhhcCC-CCCEEEEcCCCCcccHHH--HHhCCC
Q psy7357 31 GYEQLIGELETDLCEITGYDK--ISF-QPNSGAQGEYAGLRAIQCYHQAQDAH-HRNVCLIPVSAHGTNPAS--AQMAGM 104 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~--~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~-~~d~Vlv~~~~hg~~~~~--~~~~g~ 104 (302)
-+.+.+++.++.+++++|++. ..+ ..++|+.+..+++.++. + +++.|++ ...|+..... ++..|+
T Consensus 45 ~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~--------~~~~~~vi~-~g~f~~~~~~~~~~~~g~ 115 (378)
T PRK03080 45 PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--------GARRVDHLA-WESFGSKWATDVVKQLKL 115 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC--------CCCcceEEE-eCHHHHHHHHHHHhhcCC
Confidence 367899999999999999842 233 33577777656655542 3 3445444 5678776442 356799
Q ss_pred -EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 105 -SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 105 -~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
+++.++.++++.+|++++ + . ++.|.+++ .|.+|++. |+++|++ |++|+++++|++|.++...+ +..
T Consensus 116 ~~v~~~~~~~g~~~d~~~i----~---~-~~~V~~~h~~t~tG~~~-pi~~I~~--~~~g~~~vVDa~qs~G~~pi-dv~ 183 (378)
T PRK03080 116 EDPRVLEADYGSLPDLSAV----D---F-DRDVVFTWNGTTTGVRV-PVARWIG--ADREGLTICDATSAAFALPL-DWS 183 (378)
T ss_pred CCceEeccCCCCCCCHhhc----C---C-CCCEEEEecCCccceec-cchhhcc--ccCCCeEEEecccccccCCC-CHH
Confidence 999999887778888763 3 1 23455555 46899999 7999999 88999999999986666554 333
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+ +|++++++||||+.| ||+|++++++++.+++.
T Consensus 184 ~--iD~~~~s~~K~l~~P-----~G~g~l~v~~~~~~~~~ 216 (378)
T PRK03080 184 K--LDVYTFSWQKVLGGE-----GGHGMAILSPRAVERLE 216 (378)
T ss_pred H--CcEEEEehhhhCCCC-----CceEEEEECHHHHHhhh
Confidence 3 799999999999854 68999999987766553
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=152.30 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=128.3
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCee--eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHh
Q psy7357 28 QARGYEQLIGELETDLCEITGYDKI--SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQM 101 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~ 101 (302)
.++-..+.+++.++.+++++|++.. .+..++|+ .|+ .+.+..+ ..+++|+|+++...|.+.... ++.
T Consensus 72 ~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~al---nlva~~l----~~~~gd~Iv~t~~eH~svl~~~~~a~~ 144 (805)
T PLN02724 72 SSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAAL---KLVGETF----PWSSESHFCYTLENHNSVLGIREYALE 144 (805)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHH---HHHHHHC----CCCCCCeEEEeeccccchHHHHHHHHH
Confidence 3455678899999999999999653 34555554 433 2223322 015789999998888776543 456
Q ss_pred CCCEEEEeecC--------CCCCCCH--HHHHHHHhc-------cCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--
Q psy7357 102 AGMSVEPVSVR--------KDGTIDF--SDLETKVKK-------NKETLSCLMITYP-STFGVFEENITDVCELIHEH-- 161 (302)
Q Consensus 102 ~g~~v~~i~~~--------~~g~iD~--~~l~~~i~~-------~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~-- 161 (302)
.|+++..++++ ..+.+|+ ++|++.+++ ..++|++|.+++- |.+|.+. |+++|.++++..
T Consensus 145 ~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~-pi~~i~~~~~~~~~ 223 (805)
T PLN02724 145 KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKF-PLDLVKLIKDNQHS 223 (805)
T ss_pred cCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcC-CHHHHHHHHHhccc
Confidence 79999999986 3445554 667776420 1245678888774 7899999 799876655532
Q ss_pred ------CCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCCCC
Q psy7357 162 ------GGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 162 ------g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lpg~ 224 (302)
++++++|++|..+...+ +..++++|++++++||+|+ || |+|++++++++.+.++..
T Consensus 224 ~~~~~g~~~v~vDaaQ~~g~~pi-Dv~~~~~Dfl~~S~HK~~G------gP~G~G~L~vr~~~~~~l~p~ 286 (805)
T PLN02724 224 NFSKSGRWMVLLDAAKGCGTSPP-DLSRYPADFVVVSFYKIFG------YPTGLGALLVRRDAAKLLKKK 286 (805)
T ss_pred ccccCcceEEEeehhhhcCCCCC-ChhhcCCCEEEEecceecc------CCCCceEEEEehhhhhhhcCC
Confidence 35789999997777654 5567899999999999886 45 799999998876665433
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=139.22 Aligned_cols=174 Identities=21% Similarity=0.293 Sum_probs=129.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc---HHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN---PASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~---~~~~~~~g~~v 106 (302)
-|..+...++++.++++||.+.+. ...+|+.|+..+++++. ++++.|++.++.|... .......|+++
T Consensus 25 Yg~D~~~~~l~~~i~~l~g~e~a~-f~~sGT~An~~al~~~~--------~~~~~vi~~~~aHi~~~E~ga~~~~~G~~~ 95 (290)
T PF01212_consen 25 YGEDPTTARLEERIAELFGKEAAL-FVPSGTMANQLALRAHL--------RPGESVICADTAHIHFDETGAIEELSGAKL 95 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHTSSEEE-EESSHHHHHHHHHHHHH--------HTTEEEEEETTEHHHHSSTTHHHHHTTCEE
T ss_pred cCCChhHHHHHHHHHHHcCCCEEE-EeCCCChHHHHHHHHHH--------hcCCceeccccceeeeeccchhhHhcCcEE
Confidence 355688999999999999999875 55679888756555544 4678889988876422 33456799999
Q ss_pred EEeecCCCCCCCHHHHHHHHhc---cCCCeEEEEEecCCCc--eec--cccHHHHHHHHHHhCCEEEEecCCccc-cccc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKK---NKETLSCLMITYPSTF--GVF--EENITDVCELIHEHGGQVYLDGANMNA-QVGL 178 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~---~~~~t~~V~i~~Pn~~--G~~--~~di~~I~~ia~~~g~llivD~a~~~~-~~~~ 178 (302)
+.++.+++|.+|+++|++.+++ |.+++++|.+++|+.. |.+ .+++++|+++||++|+.+++|+|-.+- ...+
T Consensus 96 ~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~ 175 (290)
T PF01212_consen 96 IPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAAL 175 (290)
T ss_dssp EEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHH
T ss_pred EECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcc
Confidence 9999855599999999999986 4468999999999876 764 226999999999999999999985311 1100
Q ss_pred -CCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 179 -CRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 179 -~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
.++. ..++|++.+++.|.++ .|..++++.+++++
T Consensus 176 ~~~~~e~~~~~D~v~~~~tK~~g------~~~Gavl~~~~~~i 212 (290)
T PF01212_consen 176 GVSLAEIAAGADSVSFGGTKNGG------APGGAVLAGNKEFI 212 (290)
T ss_dssp HHHHHHHHTTSSEEEEETTSTT-------SSSEEEEEESHHHH
T ss_pred cccHHHHhhhCCEEEEEEEcccc------cccceEEEechHHH
Confidence 1121 2468999999999765 56779999998743
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=143.12 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..++++.+++.+|++..++..++|++ +. ...++.+. +++ |+|++++|.|+.+...++..|++++.+|+++
T Consensus 62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i---~~~~~~~~-----~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~ 133 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQILTSRGADEAI---ELLIRAFC-----EPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA 133 (354)
T ss_pred HHHHHHHHHHHhCcCHHHEEEeCCHHHHH---HHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC
Confidence 36888899999999988888888884 33 22233221 456 8999999998877777889999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh-CCEEEEecCCcccccccCCC---CccCCc-
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH-GGQVYLDGANMNAQVGLCRP---GDYGSD- 187 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~-g~llivD~a~~~~~~~~~~p---~~~gaD- 187 (302)
++.+|++.+++ + +++++|+++|| |+||.+. +.+++.++++.. ++++++|+++.- +...... .....+
T Consensus 134 ~~~~~~~~l~~-~----~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~~~~vivDeay~~-~~~~~s~~~~~~~~~~~ 206 (354)
T PRK04635 134 DYQLPLDYIEQ-L----DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTPDAIVVVDEAYIE-FCPEYSVADLLASYPNL 206 (354)
T ss_pred CCCCCHHHHHh-c----cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCCCcEEEEeCchHh-hccCcchHHHHhhCCCE
Confidence 77899998873 3 47899999999 5999998 688888888763 689999998621 1100010 011123
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.+.+|+|+. .|.|+|++++++++++.+.
T Consensus 207 iv~~S~SK~~~l----~GlRlG~~i~~~~~~~~l~ 237 (354)
T PRK04635 207 VVLRTLSKAFAL----AGARCGFTLANEELIEILM 237 (354)
T ss_pred EEEechHHHhhh----hHHHHhhhhCCHHHHHHHH
Confidence 455556776654 4899999999987776654
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=137.78 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=118.1
Q ss_pred cccHHHHHHHHHHHHHHHh--CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 29 ARGYEQLIGELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~--g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
.+|..++++.+.+.+.+.. +++..++..++|++.. ...+++.++ ++||+|+++++.|+.+...++..|.++
T Consensus 71 ~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~--l~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 143 (404)
T PRK09265 71 SKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSEL--IVMAMQALL-----NNGDEVLVPAPDYPLWTAAVSLSGGKP 143 (404)
T ss_pred CCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHH--HHHHHHHhC-----CCCCEEEEeCCCCcChHHHHHHcCCEE
Confidence 5676665555555543221 5666677777777431 122333221 678999999999998888888889999
Q ss_pred EEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc--c
Q psy7357 107 EPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG--L 178 (302)
Q Consensus 107 ~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~--~ 178 (302)
+.++.+. ++.+|++++++.++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|.++.- .... .
T Consensus 144 v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 220 (404)
T PRK09265 144 VHYLCDEEAGWFPDLDDIRSKIT---PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVH 220 (404)
T ss_pred EEEecccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCc
Confidence 9998764 35689999999987 78899999999 59998751 389999999999999999987631 1111 0
Q ss_pred CCCCcc--CCcEE-EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 179 CRPGDY--GSDVS-HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 179 ~~p~~~--gaDiv-~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.+.... ...++ +.+..|+|+.| |.|+|++++.
T Consensus 221 ~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~ 255 (404)
T PRK09265 221 ISIASLAPDLLCVTFNGLSKAYRVA----GFRVGWMVLS 255 (404)
T ss_pred CCHHHcCCCceEEEEecchhhccCc----ccceEEEEEe
Confidence 111111 12344 45556777654 8999999974
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=137.07 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=125.4
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..+++..+.+.+.+..+. +..++..++|+ ++...++.++. .++|.|+++++.|+.+...++..|++
T Consensus 72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vli~~p~~~~~~~~~~~~g~~ 143 (394)
T PRK06836 72 NAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL--------NPGDEVIVFAPYFVEYRFYVDNHGGK 143 (394)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCE
Confidence 467767777776666655443 44556666665 44433333332 57899999999998888888889999
Q ss_pred EEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHH------hCCEEEEecCCccc-
Q psy7357 106 VEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHE------HGGQVYLDGANMNA- 174 (302)
Q Consensus 106 v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~------~g~llivD~a~~~~- 174 (302)
++.+|.+++ +.+|+++++++++ +++++|++++| |++|... .++++|.++|++ +|+++++|.++...
T Consensus 144 v~~v~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~ 220 (394)
T PRK06836 144 LVVVPTDTDTFQPDLDALEAAIT---PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV 220 (394)
T ss_pred EEEEecCCccCcCCHHHHHhhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc
Confidence 999999775 6899999999997 78999999998 5899874 157888888998 89999999986311
Q ss_pred ccc--cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 175 QVG--LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 175 ~~~--~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
..+ ... ...+.-.+++.|.+|+|+.| |.|+|++++++++.
T Consensus 221 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~p----GlRiG~~~~~~~~~ 263 (394)
T PRK06836 221 YDGAEVPYIFKYYDNSIVVYSFSKSLSLP----GERIGYIAVNPEME 263 (394)
T ss_pred cCCCCCCChHHccCcEEEEecchhhccCc----ceeeEEEecCHHHh
Confidence 111 101 11222357777778888755 78999999987653
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-14 Score=134.52 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
..+...++++.+++++|.+. .+..++|++++..++.++.. ..+++.|+++...|++....++..|.++..++.
T Consensus 89 ~~~~~~~Le~~la~~~g~~~-~i~~~sG~~a~~~~i~~l~~------~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~ 161 (410)
T PRK13392 89 TSHPHVLLERELADLHGKES-ALLFTSGYVSNDAALSTLGK------LLPGCVILSDALNHASMIEGIRRSGAEKQVFRH 161 (410)
T ss_pred ChHHHHHHHHHHHHHhCCCC-EEEECcHHHHHHHHHHHHhc------CCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC
Confidence 44467789999999999764 56677898776555544321 035788888777887776667788988877763
Q ss_pred CCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC------CCC-
Q psy7357 112 RKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC------RPG- 182 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~------~p~- 182 (302)
.|.+++++.+++.. +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+..+-. .++
T Consensus 162 -----~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~ 235 (410)
T PRK13392 162 -----NDLADLEEQLASVDPDRPKLIAFESVYSMDGDIA-PIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGL 235 (410)
T ss_pred -----CCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccC
Confidence 26667777775432 57899999999 5899998 799999999999999999999864332110 011
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
....|+++.+++|+|+.+ | |++++++++++.
T Consensus 236 ~~~~div~~tlsK~~g~~------G-G~~~~~~~~~~~ 266 (410)
T PRK13392 236 MDRIDMIQGTLAKAFGCL------G-GYIAASADLIDF 266 (410)
T ss_pred CCCCcEEEEEChHhhhcc------c-chhhcCHHHHHH
Confidence 124689988889988743 3 788877766653
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=138.74 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=123.5
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeE--eeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 22 PFIPQDQARGYEQLIGELETDLCEITGY--DKISF--QPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 22 py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~--~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
.|+| ++|..++++.+.+++.+..+. +..++ ..++|+ +|...++.++... ++||+|++++|.|+.+.
T Consensus 64 ~Y~~---~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~------~pGd~Vlv~~P~y~~~~ 134 (396)
T PRK09257 64 NYLP---IEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRA------FPDAKVWVSDPTWPNHR 134 (396)
T ss_pred CcCC---CCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHh------CCCCeEEECCCCcccHH
Confidence 4555 689988888888887665432 33343 566676 4443333222211 58999999999999998
Q ss_pred HHHHhCCCEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|++++.+|. ++ ++.+|++++++.++++++++.++++.+| ||||.. .+.+++|.++|+++|+++|.|.++
T Consensus 135 ~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y 214 (396)
T PRK09257 135 AIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAY 214 (396)
T ss_pred HHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc
Confidence 899999999999997 33 4679999999998755455667777888 699976 226899999999999999999876
Q ss_pred cc-ccc-c--cCC---CCccCCc-EEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 172 MN-AQV-G--LCR---PGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 172 ~~-~~~-~--~~~---p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
.- ... . ... ....+-+ |++.|.+|+|+.| |.|+||+++
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~----GlRiG~~~~ 260 (396)
T PRK09257 215 QGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLY----GERVGALSV 260 (396)
T ss_pred cccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccc----cccceeEEE
Confidence 21 110 0 000 0111223 5566667777644 899999984
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=139.36 Aligned_cols=184 Identities=11% Similarity=0.025 Sum_probs=125.4
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
.+.|.+ .+|..++++.+.+.+++.+| ++..++..++|++..+. ..++.++ . .+++|.|+++.|.|+.+..
T Consensus 53 ~~~Y~~---~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~--~~~~~~~--~-~~~gd~vlv~~P~y~~~~~ 124 (374)
T PRK05839 53 LNKYPK---SAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF--NFPQFVL--F-DKQNPTIAYPNPFYQIYEG 124 (374)
T ss_pred cCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH--HHHHHHh--c-CCCCCEEEECCCCchhhHH
Confidence 344555 67888999999999998888 45678888888853211 1112111 0 1367899999999988888
Q ss_pred HHHhCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 98 SAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~ 172 (302)
.++..|++++.+|.+++ ..+|+++. .+ +++++|+++|| ||||.+- +++++|.++|+++|+++++|.++.
T Consensus 125 ~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~----~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~ 198 (374)
T PRK05839 125 AAIASRAKVLLMPLTKENDFTPSLNEK--EL----QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYS 198 (374)
T ss_pred HHHhcCCEEEEeecccccCCcCCcchh--hh----ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchh
Confidence 88899999999999754 34555433 22 36889999999 5999872 258888899999999999999863
Q ss_pred ccc-c-ccCCCC-------c-cCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 173 NAQ-V-GLCRPG-------D-YGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 173 ~~~-~-~~~~p~-------~-~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
--. . ...+.. . ..-. |++.+..|+|+. .|.|+|++.+++++++.+
T Consensus 199 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~----~GlRiG~ii~~~~~~~~~ 254 (374)
T PRK05839 199 EIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSA----PGLRSGFIAGDASILKKY 254 (374)
T ss_pred hcccCCCCCCHhhhhcccCccccCcEEEEeccccccCC----ccceeEEEecCHHHHHHH
Confidence 111 0 010100 0 0013 555556666654 489999999987766654
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=137.18 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=118.6
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+. + ++..++..++|+ ++...++.++. +++|+|+++++.|+.+...++..|++
T Consensus 72 ~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~v~i~~P~y~~~~~~~~~~g~~ 142 (401)
T TIGR01264 72 TVGALSAREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALA--------NAGQNILVPRPGFPLYETLAESMGIE 142 (401)
T ss_pred CCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhC--------CCCCEEEEeCCCChhHHHHHHHcCCE
Confidence 467766666666655542 3 344466666676 44423333322 57899999999988888888899999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-- 177 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-- 177 (302)
++.++++. ++.+|++++++.++ +++++|++++| |++|... +++++|.++|+++|+++++|.++.- ....
T Consensus 143 v~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 219 (401)
T TIGR01264 143 VKLYNLLPDKSWEIDLKQLESLID---EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGAT 219 (401)
T ss_pred EEEeecCCccCCCCCHHHHHHHhc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcc
Confidence 99998864 45799999999887 67889999999 5899873 2589999999999999999998631 1111
Q ss_pred cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 178 LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 178 ~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
..+...+. .+ |++.+.+|+|+.| |.|+|++++++
T Consensus 220 ~~~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~iv~~~ 256 (401)
T TIGR01264 220 FEPLASLSSTVPILSCGGLAKRWLVP----GWRLGWIIIHD 256 (401)
T ss_pred cccHHHcCCCCcEEEEccCcccCCCc----cceEEEEEecC
Confidence 11101111 12 4556566666544 89999999874
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=132.03 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.+|.+..++..++|++.. ..++++ +. ++++ |++++|.|+.+...++..|.+++.+|++. .
T Consensus 42 ~~~lr~~ia~~~~~~~~~I~it~Gs~~~--l~~~~~-~~-----~~~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~-~ 111 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKIKVLIGPGLTHF--IYRLLS-YI-----NVGN-IIIVEPNFNEYKGYAFTHGIRISALPFNL-I 111 (332)
T ss_pred HHHHHHHHHHHhCCCcceEEECCCHHHH--HHHHHH-Hh-----CCCc-EEEeCCChHHHHHHHHHcCCeEEEEeCCc-c
Confidence 6789999999999998888888888522 222222 21 3554 66668988888889999999999999865 3
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccccCC----CCccCCc
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGLCR----PGDYGSD 187 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~----p~~~gaD 187 (302)
..|.+.+++ .++++|+++|| ||||.+- +++++|.++|+++|+++|+|.++.- ......+ .... -.
T Consensus 112 ~~~~~~l~~------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~-~~ 184 (332)
T PRK06425 112 NNNPEILNN------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSY-GN 184 (332)
T ss_pred cCcHHHHhh------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccC-CC
Confidence 346554432 46788999999 5999863 1578888889999999999998631 1111001 0111 23
Q ss_pred EEE-eCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 188 VSH-LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 188 iv~-~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+++ .+..|+|+ +.|.|+||+++++++++.+..
T Consensus 185 vi~~~SfSK~~~----l~GlRiGy~v~~~~li~~l~~ 217 (332)
T PRK06425 185 VIIGRSLTKILG----IPSLRIGYIATDDYNMKISRK 217 (332)
T ss_pred EEEEeecHHhcC----CchhhheeeecCHHHHHHHHH
Confidence 444 44555555 449999999999887766543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=137.96 Aligned_cols=188 Identities=13% Similarity=0.184 Sum_probs=131.6
Q ss_pred CccCCCCCCCcccccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCC
Q psy7357 17 LTNMHPFIPQDQARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSA 91 (302)
Q Consensus 17 ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~ 91 (302)
|...+-|++ ++|..+++.++.+.+.+.+| .+..++..++|++ +......++. ++||.|+++.|.
T Consensus 85 ~~~~~~y~~---~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~--------~pGD~Vlv~~P~ 153 (447)
T PLN02607 85 FRENALFQD---YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA--------DPGDALLVPTPY 153 (447)
T ss_pred cchhhccCC---CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCC
Confidence 434445665 68999999999999988776 4455677777874 3333333322 689999999999
Q ss_pred CcccHHHHH-hCCCEEEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhC
Q psy7357 92 HGTNPASAQ-MAGMSVEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHG 162 (302)
Q Consensus 92 hg~~~~~~~-~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g 162 (302)
|+.+..... ..|++++.++++++ ..+|++++++++++. ..++++|+++|| ||+|.+- +.+++|.++|+++|
T Consensus 154 Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~ 233 (447)
T PLN02607 154 YPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKN 233 (447)
T ss_pred CcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence 988766554 57999999998743 468999999998631 247899999999 6999863 25889999999999
Q ss_pred CEEEEecCCcccccc---cCCCC----cc-----CCc-EEEeCCCcccCCCCCCCCCcceeEEE-eCCCCC
Q psy7357 163 GQVYLDGANMNAQVG---LCRPG----DY-----GSD-VSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAP 219 (302)
Q Consensus 163 ~llivD~a~~~~~~~---~~~p~----~~-----gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~ 219 (302)
+.+|+|.++..+... ..+.. .. .-. +++.+..|.|+.| |.|+|++++ ++++.+
T Consensus 234 i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~----GlRvG~ivs~n~~l~~ 300 (447)
T PLN02607 234 IHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP----GFRVGTIYSYNDKVVT 300 (447)
T ss_pred CEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC----cceEEEEEEcCHHHHH
Confidence 999999987432111 11100 01 112 4555667777655 899999998 444433
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-14 Score=137.64 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=125.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
..|.| .+|..++++.+.+++.+..|. +..++..++|++ +. ..+.++. ++||.|++++|.|+.+..
T Consensus 67 ~~Y~~---~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al-~~~~~l~--------~~Gd~Vlv~~P~Y~~~~~ 134 (433)
T PRK06855 67 YGYCP---TKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI-AKIYGLL--------RREARVIGPSPAYSTHSS 134 (433)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH-HHHHHhc--------CCCCeEEEeCCCCchHHH
Confidence 34555 689989999999988887675 445777788874 33 2222221 689999999999887654
Q ss_pred H-HHhCCCEEEEeecCC-C-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCC
Q psy7357 98 S-AQMAGMSVEPVSVRK-D-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 98 ~-~~~~g~~v~~i~~~~-~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~ 171 (302)
. ....|++++.+|+++ + ..+|+++|+++++++ ++++++++++| ||||.+- +.+++|.++|+++|+++|.|.++
T Consensus 135 ~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y 213 (433)
T PRK06855 135 AEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN-PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIY 213 (433)
T ss_pred HHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC-CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 3 335689999999874 3 368999999999632 46788999999 6999873 25888999999999999999986
Q ss_pred cc-cccc--cCCCCcc---CCcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 172 MN-AQVG--LCRPGDY---GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 172 ~~-~~~~--~~~p~~~---gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.- .... ..+.... +--|++.|..|+|+.| |.|+||++++
T Consensus 214 ~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~p----GlRiG~ii~p 258 (433)
T PRK06855 214 NNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWP----GSRCGWIEVY 258 (433)
T ss_pred cccccCCCCCCCHHHHcCcCCeEEEecCccccCCC----cceEEEEEEe
Confidence 31 1111 1111111 1237778788888766 8999999984
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-14 Score=132.65 Aligned_cols=171 Identities=21% Similarity=0.224 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|..+...++++.+++++|.+. .+..++|++|+.+++.++..+ .+++.|+.....|++....+...|.++..++
T Consensus 87 g~~~~~~~Le~~la~~~g~~~-~l~~~sG~~an~~ai~~l~~~------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~ 159 (402)
T TIGR01821 87 GTNIPHVELEAELADLHGKES-ALVFTSGYVANDATLATLAKI------IPGCVIFSDELNHASMIEGIRHSGAEKFIFR 159 (402)
T ss_pred CCcHHHHHHHHHHHHHhCCCe-EEEECchHHHHHHHHHHhhCC------CCCCEEEEcchHhHHHHHHHHHcCCeEEEEC
Confidence 445678899999999999765 466788988776666554411 2566766666677666556667788876665
Q ss_pred cCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-c-----CCCC
Q psy7357 111 VRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-L-----CRPG 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~-----~~p~ 182 (302)
. .|++++++.++...+ ++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+..+ . ..++
T Consensus 160 ~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~ 233 (402)
T TIGR01821 160 H-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA-PIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDG 233 (402)
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhcc
Confidence 3 378888888874433 6889999998 5899998 7999999999999999999998644321 1 0111
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...+|+++.+.+|.|+. +| |++++++++++.+
T Consensus 234 ~~~~~div~~t~sKa~g~------~G-G~i~~~~~~~~~l 266 (402)
T TIGR01821 234 LMHRIDIIEGTLAKAFGV------VG-GYIAASRKLIDAI 266 (402)
T ss_pred CCCCCeEEEEechhhhcc------CC-ceeecCHHHHHHH
Confidence 12368888888888863 22 7888887766554
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=138.91 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=116.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eee-----EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHh
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KIS-----FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQM 101 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~-----~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~ 101 (302)
++|..++++.+.+++.+..+.+ ..+ +..++|+.+. +.++...+ .+||+|++++|.|+.+...++.
T Consensus 90 ~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l---~~~~~~~~-----~pGd~Vlv~~P~y~~y~~~~~~ 161 (423)
T PLN02397 90 IEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRL---GAEFLARF-----YPGSTIYIPNPTWGNHHNIFRD 161 (423)
T ss_pred cCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHH---HHHHHHHh-----CCCCEEEEeCCCchhHHHHHHH
Confidence 7899998888888775543321 111 2333344322 22222211 5899999999999999999999
Q ss_pred CCCEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccc
Q psy7357 102 AGMSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQ 175 (302)
Q Consensus 102 ~g~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~ 175 (302)
.|.+++.+|. ++ +..+|++.+++.+.++.++++++++.+| ||||.+- +++++|.++|+++|+++|.|.++. ...
T Consensus 162 ~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~ 241 (423)
T PLN02397 162 AGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241 (423)
T ss_pred cCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccC
Confidence 9999999997 33 4579999999988754467888888888 6999872 268889999999999999999862 111
Q ss_pred cc----cCCCC---ccCCcE-EEeCCCcccCCCCCCCCCcceeEE
Q psy7357 176 VG----LCRPG---DYGSDV-SHLNLHKTFCIPHGGGGPGMGPIG 212 (302)
Q Consensus 176 ~~----~~~p~---~~gaDi-v~~~~hK~l~~p~~~gGp~~G~l~ 212 (302)
.. ..... ..+.++ ++.|..|+|+. .|+|+||++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~----~G~RvG~~v 282 (423)
T PLN02397 242 GDLDADAQSVRMFVEDGHEILVAQSYAKNMGL----YGERVGALS 282 (423)
T ss_pred CchhhhhHHHHHHHhcCCcEEEEEECcccCCC----ccccceEEE
Confidence 11 00000 112234 45555666654 499999985
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=131.68 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
..+.++++++.|-|--.. +...||-.|...++..+. ..||.|+.+...||.... ..+..|++++++.
T Consensus 63 T~~vlE~RiAaLEGG~aa-~a~aSG~AA~~~ai~~la--------~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd 133 (426)
T COG2873 63 TTDVLEERIAALEGGVAA-LAVASGQAAITYAILNLA--------GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVD 133 (426)
T ss_pred hHHHHHHHHHHhhcchhh-hhhccchHHHHHHHHHhc--------cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeC
Confidence 456777888888764332 334556554433333332 689999998888875533 3578899999998
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|++.++++|+ ++|++|+++. .||-+.+. |+++|+++||++|++++||. .++..-+.+|-++|+|||
T Consensus 134 ~-----~d~~~~~~aI~---~nTkavf~EtigNP~~~v~-Die~ia~iAh~~gvpliVDN--T~atpyl~rP~~hGADIV 202 (426)
T COG2873 134 P-----DDPENFEAAID---ENTKAVFAETIGNPGLDVL-DIEAIAEIAHRHGVPLIVDN--TFATPYLCRPIEHGADIV 202 (426)
T ss_pred C-----CCHHHHHHHhC---cccceEEEEeccCCCcccc-CHHHHHHHHHHcCCcEEEec--CCCcceecchhhcCCCEE
Confidence 6 37999999999 9999999987 47877777 89999999999999999995 455556689999999999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+-|+.|+++.. |-.+|=+++.
T Consensus 203 vHS~TK~igGh----Gt~iGG~iVD 223 (426)
T COG2873 203 VHSATKYIGGH----GTAIGGVIVD 223 (426)
T ss_pred EEeecccccCC----ccccceEEEe
Confidence 99999999843 4444444443
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=138.07 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.++++..++..++|++..+..+ ++.+. ++||.|+++++.|+.+...+...|.+++.+|.+.++
T Consensus 69 ~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~--~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~ 141 (369)
T PRK08153 69 NHDLRHALAAHHGVAPENIMVGEGIDGLLGLI--VRLYV-----EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDR 141 (369)
T ss_pred cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHH--HHHhc-----CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCC
Confidence 45788889999998877888888885332222 22221 689999999999887777777889999999986654
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcc-cccc-cCCCCccCCc-EE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMN-AQVG-LCRPGDYGSD-VS 189 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~-~~~~-~~~p~~~gaD-iv 189 (302)
+|++++++.+.+ +++++|++++| |++|.+- +.+++.++++. +++++|+|.++.. ...+ .........+ |+
T Consensus 142 -~~~~~l~~~~~~--~~~~~i~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~ 217 (369)
T PRK08153 142 -EDLDALLDAARR--ENAPLVYLANPDNPMGSWH-PAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIR 217 (369)
T ss_pred -CCHHHHHHHhcc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEE
Confidence 899999887752 57888999999 5899986 46666666654 3899999998631 1111 1111111224 44
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+.+.+|+|+ +.|.|+|++++++++++.+
T Consensus 218 ~~SfSK~~g----~~GlRiG~~v~~~~~~~~l 245 (369)
T PRK08153 218 MRTFSKAYG----LAGARVGYAIGAPGTIKAF 245 (369)
T ss_pred EecchHhcc----CcchheeeeecCHHHHHHH
Confidence 554555554 4589999999987766544
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=136.44 Aligned_cols=166 Identities=18% Similarity=0.120 Sum_probs=118.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc---CCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP---VSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~---~~~hg~~~~~~~~~g~~ 105 (302)
.|..++..++++.+++++|.+..++. .++|.+++.+++.++. +++|+|+++ .+.|.++...++..|.+
T Consensus 50 ~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--------~~gd~Vli~~~d~p~~~s~~~~~~l~ga~ 121 (346)
T TIGR03576 50 VGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--------PPGRKVVHYLPEKPAHPSIPRSCKLAGAE 121 (346)
T ss_pred cCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--------CCCCEEEECCCCCCCchhHHHHHHHcCCE
Confidence 36778899999999999999554443 4455576756555554 689999875 35777776778888887
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceec---cccHHHHHHHHHHhCCEEEEecCCcccccc---cC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF---EENITDVCELIHEHGGQVYLDGANMNAQVG---LC 179 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~---~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~ 179 (302)
++.. .|+++++. . +++++|+++..|.+|.+ . |+++|+++|+++|+++++|.||.....+ ..
T Consensus 122 ~~~~-------~~l~~l~~--~---~~~~lIiitg~s~~G~v~~~~-~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~ 188 (346)
T TIGR03576 122 YFES-------DELSELKK--I---DGTSLVVITGSTMDLKVVSEE-DLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP 188 (346)
T ss_pred Eecc-------CCHHHHhh--C---cCceEEEEECCCCCCcccCHH-HHHHHHHHHHHcCCEEEEECCccccccccCCCC
Confidence 6432 24555432 2 46788888766777876 5 7999999999999999999998543211 11
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
....+++|+++.+++|++ +|+++|++++++++++.+.
T Consensus 189 ~~~~~~~divv~s~SKal------aG~r~G~v~~~~~li~~l~ 225 (346)
T TIGR03576 189 PALDLGADLVVTSTDKLM------DGPRGGLLAGRKELVDKIK 225 (346)
T ss_pred CHHHcCCcEEEeccchhc------cccceEEEEeCHHHHHHHH
Confidence 112346799999888844 4799999999988776653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=144.94 Aligned_cols=168 Identities=15% Similarity=0.114 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH-HHhCCCEEEEeecCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS-AQMAGMSVEPVSVRK 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~-~~~~g~~v~~i~~~~ 113 (302)
.+.|.|+.++++||++.+.+.++++|.++.++++++. ++||+||+.+..|-+.... ..+.|+++++++...
T Consensus 175 ~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~--------~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~ 246 (720)
T PRK13578 175 AAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL--------TPGDLVLFDRNNHKSNHHGALIQAGATPVYLETAR 246 (720)
T ss_pred HHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccc
Confidence 5899999999999999988888777788888888765 7899999999999887664 778999999997643
Q ss_pred --C---CCCCHHH-----HHHHHhccCCC-------eEEEEEecCCCceeccccHHHHHHH-HHHhCCEEEEecCCcccc
Q psy7357 114 --D---GTIDFSD-----LETKVKKNKET-------LSCLMITYPSTFGVFEENITDVCEL-IHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 114 --~---g~iD~~~-----l~~~i~~~~~~-------t~~V~i~~Pn~~G~~~~di~~I~~i-a~~~g~llivD~a~~~~~ 175 (302)
. |.++.+. |+++|+++.++ .+++++++|++.|++- |+++|.++ +|+++ ++++|+|+....
T Consensus 247 n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~y-di~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 247 NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIY-NARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceee-cHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 2 3456544 99999876322 6899999999999999 89999998 68888 888999873211
Q ss_pred --cc----cC-CCCccCCc----EEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 176 --VG----LC-RPGDYGSD----VSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 176 --~~----~~-~p~~~gaD----iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.. +. ...+.|+| +++-|+||+|+.- -+..+|-++...
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~al-----TQaS~LHvk~~~ 372 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGF-----SQTSQIHKKDNH 372 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchhh-----hhHhhhhcCCcc
Confidence 11 11 12467899 9999999999731 145666665443
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=136.12 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=122.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|......++++.+++++|.+. .+.+++|+.+.++++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 79 ~~g~~~~~~~l~~~la~~~~~~~-~i~~~~g~~~~~~~l~~~~--------~~gd~V~~~~~~~~~~~~~~~~~g~~~~~ 149 (385)
T PRK05958 79 VTGNSPAHEALEEELAEWFGAER-ALLFSSGYAANLAVLTALA--------GKGDLIVSDKLNHASLIDGARLSRARVRR 149 (385)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHhC--------CCCCEEEEeCccCHHHHHHHHhcCCceEE
Confidence 45667788999999999999653 4666778765544333321 68899999999998887777888999988
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-----C---
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-----C--- 179 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-----~--- 179 (302)
+|. .|++++++.+++.+++++++++.++ |++|... ++++|+++|+++|+++|+|+++..+..+. .
T Consensus 150 ~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~-~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~ 223 (385)
T PRK05958 150 YPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLA-PLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEA 223 (385)
T ss_pred eCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcC-CHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhh
Confidence 875 4899999999743224566666555 4789888 79999999999999999999984332110 0
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.......++++.++||+|+. +| |++++++++.+.+
T Consensus 224 ~~~~~~~~i~~~s~sK~~~~------~G-g~~~~~~~~~~~~ 258 (385)
T PRK05958 224 GLAGEPDVILVGTLGKALGS------SG-AAVLGSETLIDYL 258 (385)
T ss_pred CCCCCCceEEEEechhhccc------CC-cEEEcCHHHHHHH
Confidence 11112234778888998863 22 7888887665543
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=142.42 Aligned_cols=178 Identities=9% Similarity=0.042 Sum_probs=118.2
Q ss_pred cccHHHHHHHHHH-HHHHHhCC---Cee--eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHh
Q psy7357 29 ARGYEQLIGELET-DLCEITGY---DKI--SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQM 101 (302)
Q Consensus 29 sqG~l~~~~e~~~-~l~~l~g~---~~~--~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~ 101 (302)
.+|.++.++++.. .+.+.++. +.. ++..++|+ +|...++.++... .. -++||+|++++|.|+.+...+..
T Consensus 127 p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~--~l-l~pGD~Vlv~~P~y~~y~~~~~l 203 (521)
T TIGR03801 127 PDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKAN--EL-LKKGDKIALMTPIFTPYLEIPEL 203 (521)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHh--hc-CCCCCEEEEeCCCcHHHHHHHHH
Confidence 3677777777764 44444332 222 56667776 4443333332100 00 16899999999998888776654
Q ss_pred --CCCEEEEeecCC--C-----CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHh--CCEEEE
Q psy7357 102 --AGMSVEPVSVRK--D-----GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEH--GGQVYL 167 (302)
Q Consensus 102 --~g~~v~~i~~~~--~-----g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~--g~lliv 167 (302)
.|++++.++.++ + ..+|+++++++++ +++++|+++|| ||||.+- +++++|.++|+++ ++++|.
T Consensus 204 ~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~ 280 (521)
T TIGR03801 204 PRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD---PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILT 280 (521)
T ss_pred hcCCcEEEEeecccccccccccCCCCHHHHHHhcC---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 478888888753 1 5689999999887 78999999999 5999873 2588889999986 899999
Q ss_pred ecCCcccccccCCCCccCC-c-EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 168 DGANMNAQVGLCRPGDYGS-D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 168 D~a~~~~~~~~~~p~~~ga-D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
|.++..-.....+...... . |++.|.+|+|+. .|+|+|+++++++
T Consensus 281 DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~----~G~RlG~i~~~~~ 327 (521)
T TIGR03801 281 DDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGA----TGWRLGTIALHKD 327 (521)
T ss_pred CCCchhhcccccchhhhCCCCEEEEEcchhhccC----chhhhhhhhcCch
Confidence 9986310001111111111 2 566666776665 4999999999865
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=141.01 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=126.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.|..+...++++.+++++|.+.+ +..++|..++.+++.++. ++||.|+++++.|.+....++..|++++.+
T Consensus 142 ~g~~~~~~ele~~lA~~~g~~~a-i~~~~G~~an~~~i~al~--------~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~ 212 (489)
T PLN02483 142 GGTTKLHRELEELVARFVGKPAA-IVFGMGYATNSTIIPALI--------GKGGLIISDSLNHNSIVNGARGSGATIRVF 212 (489)
T ss_pred cCCcHHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEcchhhHHHHHHHHHcCCeEEEE
Confidence 46678899999999999997664 455677766644444443 689999999999988887888999999999
Q ss_pred ecCCCCCCCHHHHHHHHhcc----CCCe-----EEEEEecC--CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-
Q psy7357 110 SVRKDGTIDFSDLETKVKKN----KETL-----SCLMITYP--STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG- 177 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~----~~~t-----~~V~i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~- 177 (302)
+.+ |++++++.+++. .++| +.++++++ |..|.+. ++++|.++|+++|+++++|+++..+..+
T Consensus 213 ~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~-~l~~I~~la~~~~~~livDEa~s~g~~G~ 286 (489)
T PLN02483 213 QHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC-KLPEIVAVCKKYKAYVYLDEAHSIGAVGK 286 (489)
T ss_pred eCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc-CHHHHHHHHHHcCCEEEEECcCccCccCC
Confidence 853 677777766521 1333 55666654 5679898 7999999999999999999998543211
Q ss_pred -------cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -------LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -------~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+......+.||++++.+|+|+. .+|++++++++++.+.
T Consensus 287 ~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-------~GG~i~~~~~li~~l~ 331 (489)
T PLN02483 287 TGRGVCELLGVDPADVDIMMGTFTKSFGS-------CGGYIAGSKELIQYLK 331 (489)
T ss_pred CCCchHHhcCCCcccCcEEEEecchhccc-------CceEEEcCHHHHHHHH
Confidence 0111123579999999998863 2389998887776654
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-14 Score=133.00 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=117.2
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+++.+..-.|. +..++..++|+ +|...++.++. .+||+|+++++.|+.+...+...|++
T Consensus 72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 143 (403)
T TIGR01265 72 SVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA--------NPGANILVPRPGFPLYDTRAAFSGLE 143 (403)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 467666666555555443333 33455555565 44433333332 57899999999988777778889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-- 177 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-- 177 (302)
++.++.++ ++.+|+++++++++ +++++|++++| |++|.+. +++++|.++|+++|+++|+|.++.- ....
T Consensus 144 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 220 (403)
T TIGR01265 144 VRLYDLLPEKDWEIDLDGLEALAD---EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAP 220 (403)
T ss_pred EEEecCCcccCCccCHHHHHHHhC---cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCC
Confidence 99998754 45799999999987 67899999999 5899874 1589999999999999999998631 1111
Q ss_pred cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 178 LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 178 ~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..+...+. .+ |++.|..|+|+.| |.|+|++++.
T Consensus 221 ~~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~ 256 (403)
T TIGR01265 221 FIPMASFASIVPVLSLGGISKRWVVP----GWRLGWIIIH 256 (403)
T ss_pred ccchhhhccCCcEEEEeecccccCCC----cceEEEEEEe
Confidence 11111111 12 4555667776655 8999999985
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=136.77 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=122.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
-|......++++++++++|.+.+ +...+|..++.+++.++. +++|+|++++..|++....+...+++++++
T Consensus 39 yg~~~~~~~LE~~lA~~~g~e~a-l~~~sG~~a~~~~i~~l~--------~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~ 109 (392)
T PLN03227 39 YGTIDAHLELEQCMAEFLGTESA-ILYSDGASTTSSTVAAFA--------KRGDLLVVDRGVNEALLVGVSLSRANVRWF 109 (392)
T ss_pred cCChHHHHHHHHHHHHHhCCCcE-EEecCcHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHHcCCeEEEe
Confidence 45556899999999999999854 556678766655555543 789999999999987766666777888877
Q ss_pred ecCCCCCCCHHHHHH---HHhcc--------CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 110 SVRKDGTIDFSDLET---KVKKN--------KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~---~i~~~--------~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
+.. |++++++ .+... +++++.|++.++ |++|.+. |+++|.++|+++|+++|+|.++.++..+
T Consensus 110 ~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~-~l~~i~~l~~~~g~~livDe~~~~g~~g 183 (392)
T PLN03227 110 RHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA-PLKELVALKEEFHYRLILDESFSFGTLG 183 (392)
T ss_pred CCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc-CHHHHHHHHHHcCCEEEEECcccccccC
Confidence 753 3444444 44311 246788888887 5789998 7999999999999999999998533221
Q ss_pred c----------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 178 L----------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 178 ~----------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
. ..| ..++|+++.+.+|.+ ||.+|++++++++++.
T Consensus 184 ~~G~g~~~~~g~~p-~~~~Div~~slsk~~-------g~~gg~v~~~~~~~~~ 228 (392)
T PLN03227 184 KSGRGSLEHAGLKP-MVHAEIVTFSLENAF-------GSVGGMTVGSEEVVDH 228 (392)
T ss_pred CCCCcHHHHcCCCC-CCCceEEEeechhhh-------hccCcEEecCHHHHHH
Confidence 1 112 246799999877755 3777888888776543
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=142.72 Aligned_cols=182 Identities=11% Similarity=0.099 Sum_probs=121.3
Q ss_pred cccHHHHHHHHHHHHH-HHhCC---C--eeeEeeCchH-HHHHHHHHHHH--HHHHhhcCCCCCEEEEcCCCCcccHHHH
Q psy7357 29 ARGYEQLIGELETDLC-EITGY---D--KISFQPNSGA-QGEYAGLRAIQ--CYHQAQDAHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~-~l~g~---~--~~~~~~~~Ga-~a~~a~l~a~~--~~~~~~g~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
..|.+++++++.+.+. +..+. + ..++..++|+ +|...++.++. .++ ++||+|++++|.|+.+...+
T Consensus 133 ~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll-----~pGD~Vlv~~P~y~~Y~~~~ 207 (527)
T PRK09275 133 PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL-----KAGDKIALMTPIFTPYLEIP 207 (527)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcC-----CCCCEEEEeCCChHHHHHHH
Confidence 6899999998887443 32222 1 2256666676 44433333321 111 68999999999988887776
Q ss_pred HhC--CCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHH--hCCEEEEecC
Q psy7357 100 QMA--GMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHE--HGGQVYLDGA 170 (302)
Q Consensus 100 ~~~--g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~--~g~llivD~a 170 (302)
+.. +.+++.++.++ +..+|+++|+++++ +++++|+++|| ||+|.+- +.+++|+++|++ +++++|.|.+
T Consensus 208 ~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEv 284 (527)
T PRK09275 208 ELPRYDLEVVHINADEENEWQYPDSELEKLRD---PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDV 284 (527)
T ss_pred HHcCCCeEEEEeecCcccCCCCCHHHHHhhcC---CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 665 45666666543 35789999999887 88999999999 5999873 258889999954 5999999998
Q ss_pred CcccccccCCCCc-cC-CcEEEeCCCcccCCCCCCCCCcceeEEEeCC-----CCCCCC
Q psy7357 171 NMNAQVGLCRPGD-YG-SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH-----LAPFLP 222 (302)
Q Consensus 171 ~~~~~~~~~~p~~-~g-aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~-----l~~~lp 222 (302)
+..-.....+... .. --|++.|.+|+|++ .|+|+|+++++++ +++.+|
T Consensus 285 Y~~f~~~~~s~~~~~~~~~I~v~SfSK~f~m----tG~RlG~i~~~~~~v~~~~i~~l~ 339 (527)
T PRK09275 285 YGTFVDDFRSLFAVLPYNTILVYSFSKYFGA----TGWRLGVIALHEDNVFDKLIAKLP 339 (527)
T ss_pred ChhhcccccCHHHhCCCCEEEEeehhhhccC----cHhHHhhhhcCchhHHHHHHHhcc
Confidence 6311011111111 11 12556666676664 4999999999876 555553
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-14 Score=130.62 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=118.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|.+ ..++..++|++..+..+..+.. + +++|.|+++++.|+.+...++..|++
T Consensus 61 ~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~-~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~ 134 (364)
T PRK07865 61 TAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLG-L-----GPGDVVVIPELAYPTYEVGARLAGAT 134 (364)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHc-C-----CCCCEEEECCCCcccHHHHHHhcCCE
Confidence 5788888888888888877644 5678888887532122211110 1 57899999999998888888889999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--c-
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG--L- 178 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~--~- 178 (302)
++.++ ++++++ . +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++.. .... .
T Consensus 135 ~~~~~-------~~~~l~---~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 201 (364)
T PRK07865 135 VVRAD-------SLTELG---P---QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVS 201 (364)
T ss_pred EEecC-------ChhhCC---c---ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCc
Confidence 88775 223322 1 56789999999 5899763 1578899999999999999998641 1100 0
Q ss_pred -CCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 -CRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 -~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+ ++..-.+++.+.+|.|+.| |.|+|++++++++++.+.
T Consensus 202 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~i~~~~~~~~~~~ 246 (364)
T PRK07865 202 ILDPRVCGGDHTGLLAVHSLSKQSNLA----GYRAGFVAGDPALVAELL 246 (364)
T ss_pred cccccccCCccceEEEEeechhccCCC----ceeeEEEecCHHHHHHHH
Confidence 001 1111237777778877655 899999999887766553
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=134.87 Aligned_cols=165 Identities=20% Similarity=0.240 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|.+..++..++|++.. ..+.++. -++|+|+++.+.|+.+...++..|.+++.++.++++.
T Consensus 58 ~~lr~~ia~~~~~~~~~I~~t~G~~~~--l~~~~~~-------~~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~ 128 (337)
T PRK03967 58 DPLREAIAEFYGLDAENIAVGNGSDEL--ISYLVKL-------FEGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFT 128 (337)
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHH--HHHHHHH-------hCCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCC
Confidence 567777888888888888888887532 1222221 1578999999998877777788999999999987778
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc--cCCCCccCCc-EEEeC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG--LCRPGDYGSD-VSHLN 192 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~--~~~p~~~gaD-iv~~~ 192 (302)
+|++++++.+ ++++++++++| |+||.+. +.++|.++++ +++++|+|.++.- +.. .........+ |++.|
T Consensus 129 ~d~~~l~~~~----~~~~~v~~~~P~NPtG~~~-~~~~l~~i~~-~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~l~S 201 (337)
T PRK03967 129 IDGERIAEKA----KNASAVFICSPNNPTGNLQ-PEEEILKVLE-TGKPVVLDEAYAE-FSGKSLIGLIDEYPNLILLRT 201 (337)
T ss_pred cCHHHHHHhc----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHh-cCCEEEEECchhh-hcccchHHHHhhCCCEEEEec
Confidence 9999998864 46778889999 5999988 6899999995 6999999998631 110 0000011123 45565
Q ss_pred CCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..|+|+.| |.|+|++++++++++.+
T Consensus 202 ~SK~~~l~----GlRiG~iv~~~~~i~~~ 226 (337)
T PRK03967 202 FSKAFGLA----GIRAGYAIANEEIIDAL 226 (337)
T ss_pred chHhhcch----hhhheeeecCHHHHHHH
Confidence 66666544 89999999987766554
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=129.30 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|..+...++++.+++++|.+. .+..++|++++.+++..+..+ .+++.|+.....|++....+...+.++..++
T Consensus 88 g~~~~~~~l~~~la~~~g~~~-~~~~~sG~~an~~ai~~l~~~------~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~ 160 (407)
T PRK09064 88 GTNHYHVELERELADLHGKEA-ALVFTSGYVSNDATLSTLAKL------IPDCVIFSDELNHASMIEGIRRSRCEKHIFR 160 (407)
T ss_pred cCHHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHHhCC------CCCCEEEEeCcchHHHHHHHHHcCCcEEEEC
Confidence 556788999999999999754 466778887765665554311 2456655555556555455566677776555
Q ss_pred cCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccc-cccC-----CCC
Q psy7357 111 VRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQ-VGLC-----RPG 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~-~~~~-----~p~ 182 (302)
. .|++++++.++... +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+. +... ..+
T Consensus 161 ~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~-~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~ 234 (407)
T PRK09064 161 H-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA-PIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDG 234 (407)
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcC
Confidence 3 48899999886432 46889999998 5889998 79999999999999999999986442 2110 011
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....|+++.+++|.|+.+ +|++++++++++.+
T Consensus 235 ~~~~~div~~t~sKa~g~~-------GG~~~~~~~~~~~l 267 (407)
T PRK09064 235 LMDRIDIIEGTLAKAFGVM-------GGYIAGSAALVDAV 267 (407)
T ss_pred CCCCCeEEEEecchhhhcc-------CceEecCHHHHHHH
Confidence 123589988888988632 28888887765543
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=130.85 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +.+.||+.|..+++.++. ++||+||++...|+... ..+...|++++++
T Consensus 64 P~~~~lE~~la~leg~~~a-v~~sSG~aAi~~al~all--------~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fv 134 (384)
T PRK06434 64 PTVQAFEEKYAVLENAEHA-LSFSSGMGAITSAILSLI--------KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYI 134 (384)
T ss_pred hhHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEE
Confidence 6788999999999999875 567788877656666553 68999999887766543 2355789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
++++...++ ++ .+++++|++..| |+++.+. |+++|+++||++| +++|+++... ...+|-..|+|+
T Consensus 135 d~~~~~~~~-------l~--~~~tklv~~e~~snpt~~v~-Di~~I~~la~~~~--lvVD~t~~s~--~~~~pl~~gaDi 200 (384)
T PRK06434 135 DTDRLNSLD-------FD--PSNYDLIYAESITNPTLKVP-DIKNVSSFCHEND--VIVDATFASP--YNQNPLDLGADV 200 (384)
T ss_pred CCCChhhee-------ec--CCCeeEEEEEcCCCCCceee-cHHHHHHHHHHcC--eEEECCCCCc--ccCCchhcCCCE
Confidence 985423222 33 147899999998 5888888 8999999999998 4579885322 234577789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC-CCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPF 220 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~ 220 (302)
++.|.||+++++- +--+|.+++++ ++.++
T Consensus 201 vv~S~tK~i~G~~---d~~gG~vv~~~~~~~~~ 230 (384)
T PRK06434 201 VIHSATKYISGHS---DVVMGVAGTNNKSIFNN 230 (384)
T ss_pred EEeecccccCCCC---CceEEEEecCcHHHHHH
Confidence 9999999998431 11267887753 44443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=141.47 Aligned_cols=179 Identities=12% Similarity=0.163 Sum_probs=125.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee---eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI---SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~---~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
.|..+...++++++++.+|++.. ++..++|+++.+. .+++.+. ++||.|++++|.|+.+...++..|.++
T Consensus 730 ~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~--lll~aLl-----~pGD~VLVp~PtY~~Y~~~a~~~Ga~v 802 (1082)
T PLN02672 730 ESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFN--KLVLCCV-----QEGGTLCFPAGSNGTYVSAAKFLKANF 802 (1082)
T ss_pred CCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHH--HHHHHHc-----CCCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 34456678889999998898764 6777888753321 2223222 689999999999998888999999999
Q ss_pred EEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC--CCceec--cccHHHHHHHHHHhCCEEEEecCCc-ccccccC
Q psy7357 107 EPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP--STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQVGLC 179 (302)
Q Consensus 107 ~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~~~~ 179 (302)
+.+|+++ +..+|+++|++++++ .+.+.|+++|| ||||.+ .+++++|.++|+++|+++|+|.++. .....-.
T Consensus 803 v~Vpl~~e~gf~lD~d~Le~al~~--~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~ 880 (1082)
T PLN02672 803 RRIPTKSSDGFKLTAKTLASTLET--VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSG 880 (1082)
T ss_pred EEEecccccCCCCCHHHHHHHhcc--CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCC
Confidence 9999974 357899999999972 13457889998 599987 2268999999999999999999873 1111100
Q ss_pred ------CC-C-ccC-----CcEEE-eCCCcccCCCCCCCCCcceeEEEeCC-CCCCC
Q psy7357 180 ------RP-G-DYG-----SDVSH-LNLHKTFCIPHGGGGPGMGPIGVKSH-LAPFL 221 (302)
Q Consensus 180 ------~p-~-~~g-----aDiv~-~~~hK~l~~p~~~gGp~~G~l~~~~~-l~~~l 221 (302)
.+ . .+. ..+++ .+..|.++ ++|.|+||++++++ +++.+
T Consensus 881 ~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~----lpGLRIGylIap~~eLi~~l 933 (1082)
T PLN02672 881 WGGWDLKSILSRLKSSNPSFAVALLGGLSTELL----SGGHEFGFLALNDSVLIDAF 933 (1082)
T ss_pred CcccchhhHHHHhccccCCceEEEEeCcHHhhc----cHHHHheeEEeCCHHHHHHH
Confidence 00 0 010 12444 44555555 55999999999654 66555
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=131.66 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~ 108 (302)
-.....+++.++++.|.+.+.+ ..||-.|..+++..+. +.+++|+..+..|+....+ ....|++...
T Consensus 76 nPt~~~le~~iaal~ga~~~l~-fsSGmaA~~~al~~L~--------~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALL-FSSGMAAITVALLHLL--------PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEE-ecccHHHHHHHHHHhc--------CCCCcEEEeCCCcccHHHHHHHHHHHhCceeee
Confidence 3567889999999999987544 4567654544444433 6788888888877665443 3477888888
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+..+ |+++++++++ ++|++|++++| ||+..+. ||++|+++||++|++++||.. ++-....+|-.+|||
T Consensus 147 vd~~-----~~~~~~~~i~---~~t~~V~~ESPsNPll~v~-DI~~l~~la~~~g~~vvVDnT--f~~p~~~~pL~lGAD 215 (409)
T KOG0053|consen 147 VDVD-----DLKKILKAIK---ENTKAVFLESPSNPLLKVP-DIEKLARLAHKYGFLVVVDNT--FGSPYNQDPLPLGAD 215 (409)
T ss_pred echh-----hHHHHHHhhc---cCceEEEEECCCCCccccc-cHHHHHHHHhhCCCEEEEeCC--cCcccccChhhcCCC
Confidence 8763 7889999998 78999999999 7988888 899999999999999999963 555556788899999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLPVH 224 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lpg~ 224 (302)
||+.|..|+|++... --.|.++.+ +++++++...
T Consensus 216 IV~hSaTKyi~Ghsd---vi~G~iv~n~~~~~~~l~~~ 250 (409)
T KOG0053|consen 216 IVVHSATKYIGGHSD---VIGGSVVLNSEELASRLKFL 250 (409)
T ss_pred EEEEeeeeeecCCcc---eeeeEEecCcHHHHHHHHHH
Confidence 999999999985422 246788887 6777766543
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=131.21 Aligned_cols=228 Identities=16% Similarity=0.216 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccHHHHHhCCCEEEEeecC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~~~~~~~g~~v~~i~~~ 112 (302)
..+.++++.+++++|++.+ +.+.+|+.|+.. +.++. -++||+| +.+.| .+........|...+.++.+
T Consensus 71 ~s~~~lE~~va~~~G~~~a-v~v~sGT~Al~l-l~~l~-------l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~d 139 (450)
T TIGR02618 71 RNFYHLERTVRELYGFKYV-VPTHQGRGAENL-LSQIA-------IKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIID 139 (450)
T ss_pred CcHHHHHHHHHHHHCCCeE-EEcCCHHHHHHH-HHHhC-------CCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecc
Confidence 3578999999999999985 456788877633 22221 2678875 55555 33344457788877777543
Q ss_pred ----------CCCCCCHHHHHHHHhcc-CCCeEEEEEecC-CCc-eec---cccHHHHHHHHHHhCCEEEEecCCcc--c
Q psy7357 113 ----------KDGTIDFSDLETKVKKN-KETLSCLMITYP-STF-GVF---EENITDVCELIHEHGGQVYLDGANMN--A 174 (302)
Q Consensus 113 ----------~~g~iD~~~l~~~i~~~-~~~t~~V~i~~P-n~~-G~~---~~di~~I~~ia~~~g~llivD~a~~~--~ 174 (302)
.+|.+|+++|+++|+++ .++++.|.+.++ |.. |.. . ++++|.++|+++|+.+|.|+|+.. +
T Consensus 140 ea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~-~l~~I~elA~~~Gl~vi~DaAR~~gNA 218 (450)
T TIGR02618 140 EAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMA-NMREVRELCEAHGIKVFYDATRCVENA 218 (450)
T ss_pred cccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHH-HHHHHHHHHHHcCCEEEEEccchhhCh
Confidence 35889999999999843 224556677666 444 565 4 799999999999999999999865 2
Q ss_pred cc------cc-CCCC-------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCCCCcc---cC-CCCcch-
Q psy7357 175 QV------GL-CRPG-------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLPVHPL---SS-IDSSIG- 234 (302)
Q Consensus 175 ~~------~~-~~p~-------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lpg~~~---~~-~~~~l~- 234 (302)
.. +. ..+- -..+|.+++|++|+++. |-+|+++++ +++.+++....+ |. +...|.
T Consensus 219 ~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~------~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~ 292 (450)
T TIGR02618 219 YFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLV------NIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAG 292 (450)
T ss_pred hhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCC------CCceEEEeCCHHHHHHHHHHhhhcCCccccCchhh
Confidence 21 01 1111 11589999999998874 556889876 466666544321 11 122221
Q ss_pred -hhhHHHHhhHhhHHHHH--------HHHH-HHh-cccccccccCCCcceeEEEEEEeccc
Q psy7357 235 -AVSAAHYGSASILPISW--------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDF 284 (302)
Q Consensus 235 -~~~a~~~~~~~~~~~~~--------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~ 284 (302)
.+.|..++--....+.| .|+. +|. .|++++. ++. .|.+.||...+
T Consensus 293 r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~Gvpv~~-p~g----gh~V~vda~~~ 348 (450)
T TIGR02618 293 RDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAAGVPIVE-PVG----GHAVFLDARRF 348 (450)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCcccC-CCC----cceEEEEhHHh
Confidence 12211111111111111 3444 665 5898864 345 79999997754
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=128.55 Aligned_cols=167 Identities=22% Similarity=0.188 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~ 108 (302)
-.-.+.+++.+++|-|.+.+.. ..||-.|..++++++. ++||+|++++..||.... ..+..|+++.+
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~a-fsSGmaAI~~~~l~ll--------~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~ 132 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFA-FSSGMAAISTALLALL--------KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTF 132 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEE-ecCcHHHHHHHHHHhc--------CCCCEEEecCCccchHHHHHHHHHHhcCeEEEE
Confidence 3567899999999999887644 4577666644455544 679999999998886654 34578888888
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++. .|.+++++++.+ ++|++|+++.| |++--+. ||++|+++||++|++++||. .++...+.+|-++|+|
T Consensus 133 ~d~-----~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~-DI~~i~~~A~~~g~~vvVDN--TfatP~~q~PL~~GaD 202 (396)
T COG0626 133 VDP-----GDDEALEAAIKE--PNTKLVFLETPSNPLLEVP-DIPAIARLAKAYGALVVVDN--TFATPVLQRPLELGAD 202 (396)
T ss_pred ECC-----CChHHHHHHhcc--cCceEEEEeCCCCcccccc-cHHHHHHHHHhcCCEEEEEC--CcccccccChhhcCCC
Confidence 875 355566666662 58999999999 6877778 89999999999999999994 5677677899999999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
|++-|+.|.+++... --.|.++++ +++.+++
T Consensus 203 IVvhSaTKyl~GHsD---vl~G~v~~~~~~~~~~~ 234 (396)
T COG0626 203 IVVHSATKYLGGHSD---VLGGVVLTPNEELYELL 234 (396)
T ss_pred EEEEeccccccCCcc---eeeeEEecChHHHHHHH
Confidence 999999999985422 235666655 4555544
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=128.67 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=114.1
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
+...|..+.++++++.+++++|.+.+ +..++|+.++.+....+. +++|.|++....|++.....+......
T Consensus 49 ~~~~g~~~~~~~~e~~la~~~~~~~~-l~~~sG~~a~~~~~~~~~--------~~~d~ii~d~~~H~sv~~~~~~~~~~~ 119 (370)
T PRK05937 49 RAILGPSSLLDDLEHKIAHFHGAPEA-FIVPSGYMANLGLCAHLS--------SVTDYVLWDEQVHISVVYSLSVISGWH 119 (370)
T ss_pred CcccCChHHHHHHHHHHHHHhCCCeE-EEECChHHHHHHHHHHhC--------CCCCEEEEEhhhhHHHHHHHHHcCCce
Confidence 66678889999999999999999765 667888876633222211 467888887888877766554432222
Q ss_pred EEeecCCCCCCCHHHHHHHHhccC---CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC-
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP- 181 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p- 181 (302)
+.+ +..|+++|++.+++.+ +++.+|+++++ |++|.+. |+++|+++|+++|+++++|++|..+..+..--
T Consensus 120 ~~~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~-pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g 193 (370)
T PRK05937 120 QSF-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLA-PLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG 193 (370)
T ss_pred EEe-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 233 3479999999997432 34667778887 4889999 79999999999999999999996554332100
Q ss_pred --CccC---CcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 182 --GDYG---SDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 182 --~~~g---aDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..++ .++++.+.+|.++ ++|+|+++.+
T Consensus 194 ~~~~~~~~~~~~~~~tlsK~~g------~~G~~vl~~~ 225 (370)
T PRK05937 194 FCHSLGYENFYAVLVTYSKALG------SMGAALLSSS 225 (370)
T ss_pred hHHhhCCCCCcEEEEechhhhh------cCceEEEcCH
Confidence 0233 2355666667664 3356666543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-14 Score=132.85 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=117.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE-
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS- 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~- 105 (302)
.+|..++++.+.+.+.+..|+ +..++..++|++..+..+..+ + +++|+|++++|.|+.+...++..|.+
T Consensus 75 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~---~-----~~gd~V~v~~P~Y~~~~~~~~~~g~~~ 146 (409)
T PRK07590 75 EQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDI---F-----GPDNTIAVTDPVYPVYVDTNVMAGRTG 146 (409)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHh---c-----CCCCEEEEeCCCCcchHHHHHHcCCcc
Confidence 578888888888877666654 556788888885321222222 1 58899999999999888888888886
Q ss_pred ----------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 106 ----------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 106 ----------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~ 172 (302)
++.+|+++++...++ +.+ +++++|+++|| ||||.+- +.+++|.++|+++|+++|.|.++.
T Consensus 147 ~~~~~~~~~~~~~v~~~~~~~~~~d-----~~~--~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~ 219 (409)
T PRK07590 147 EANEDGRYSGIVYLPCTAENNFVPE-----LPE--EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYE 219 (409)
T ss_pred cccccccccceeEeecccccCCccc-----Ccc--cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccch
Confidence 899998754322222 111 57889999999 6999872 258889999999999999999863
Q ss_pred c-cccc-cCCC-Ccc-C-Cc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 173 N-AQVG-LCRP-GDY-G-SD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 173 ~-~~~~-~~~p-~~~-g-aD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
- .... ...+ ... + .+ |++.|.+|+|+.| |.|+|++++++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p----GlRiG~~i~~~~li~ 269 (409)
T PRK07590 220 AFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT----GTRCAYTVVPKELKG 269 (409)
T ss_pred hhccCCCCCcchhhCCCcccceEEEecCccccCCc----CceeEEEEcCHHHhh
Confidence 1 1111 1011 111 1 12 4456667777654 899999999987776
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=126.87 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.++++..++..++|++. +..+.++.+ .+++.|++++|.|+.+...++..|.+++.+|.+.++.
T Consensus 60 ~~Lr~aia~~~~v~~~~I~it~G~~~--~i~~~~~~l------~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~ 131 (360)
T PRK07392 60 RELRLALAQHHQLPPEWILPGNGAAE--LLTWAGREL------AQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQP 131 (360)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHH--HHHHHHHHh------CCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccC
Confidence 36777788888988888888888852 222233322 3567999999999888888889999999999975543
Q ss_pred -----CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccc-cCCC---CccC
Q psy7357 117 -----IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVG-LCRP---GDYG 185 (302)
Q Consensus 117 -----iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~-~~~p---~~~g 185 (302)
.|++++++.. +++++++++|| ||||.+- +.++|.+++++++. +|+|.++.- .... ..+. ....
T Consensus 132 ~~~~~~~~~~~~~~~----~~~~~~~l~nP~NPTG~~~-~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~ 205 (360)
T PRK07392 132 SPGLTLRLQTLPPQL----TPNDGLLLNNPHNPTGKLW-SREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEY 205 (360)
T ss_pred CcccccCHHHHHHhc----cCCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcC
Confidence 3566655442 46788999999 5999987 68899999999985 567998631 1111 0010 0111
Q ss_pred Cc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 186 SD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 186 aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.. |++.|..|+|+.| |.|+|++++++++++.+.
T Consensus 206 ~~vi~i~S~SK~~~l~----GlRiG~~v~~~~~~~~~~ 239 (360)
T PRK07392 206 PNLIILRSLTKFYSLP----GLRLGYAIAHPDRLQRWQ 239 (360)
T ss_pred CCEEEEEechhhhcCC----chheeeeeCCHHHHHHHH
Confidence 12 5555666766654 899999999877766553
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-13 Score=122.39 Aligned_cols=247 Identities=19% Similarity=0.216 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHhCCCe--eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 32 YEQLIGELETDLCEITGYDK--ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..++.+.++.+.++-.+.+. ..+....|- .+. .++++.+ .++||.|++..|.|+......+..|-+++.
T Consensus 62 ~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi---~~~I~~~-----T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~ 133 (388)
T COG1168 62 SDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI---SLAIRAL-----TKPGDGVVIQTPVYPPFYNAIKLNGRKVIE 133 (388)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhH---HHHHHHh-----CcCCCeeEecCCCchHHHHHHhhcCcEEEe
Confidence 35688899999999887653 455444453 434 3334433 168999999999987677778888999999
Q ss_pred eecCC-CC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc-ccccc----
Q psy7357 109 VSVRK-DG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQVG---- 177 (302)
Q Consensus 109 i~~~~-~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~~---- 177 (302)
.|+.. ++ .+|+++||+++.+ +++++.++||| ||+|.+ .+++.+|+++|.+||+++|.|+.|. .-+.+
T Consensus 134 ~pL~~~~~~y~iD~~~LE~~~~~--~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~ 211 (388)
T COG1168 134 NPLVEDDGRYEIDFDALEKAFVD--ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHI 211 (388)
T ss_pred ccccccCCcEEecHHHHHHHHhc--CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCcc
Confidence 99863 44 5799999999983 66799999999 799987 2379999999999999999999762 11111
Q ss_pred -cCCCCccCCc--EEEeCCCcccCCCCCCCCCcceeEEEeC-C----CCCCCCCCcccCCCCcchhhh--HHH-----Hh
Q psy7357 178 -LCRPGDYGSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKS-H----LAPFLPVHPLSSIDSSIGAVS--AAH-----YG 242 (302)
Q Consensus 178 -~~~p~~~gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~-~----l~~~lpg~~~~~~~~~l~~~~--a~~-----~~ 242 (302)
........+| +.+.+..|||..+ |-..++++... + +.++|+....+ ....++-+| |+. |+
T Consensus 212 ~~a~ls~~~a~~~it~~saSKtFNla----GL~~a~~Ii~n~~lr~~~~~~l~~~~~~-~~n~lg~~A~~aAY~~G~~WL 286 (388)
T COG1168 212 PFASLSERFADNSITLTSASKTFNLA----GLKCAYIIISNRELRAKFLKRLKRNGLH-GPSALGIIATEAAYNQGEPWL 286 (388)
T ss_pred chhhcChhhhcceEEEeeccccccch----hhhheeEEecCHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHhchHHH
Confidence 1111222234 6667779999865 77778777763 3 34444422211 112222221 111 11
Q ss_pred hHh--hHHHHHHHHH-HHh---cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhcC
Q psy7357 243 SAS--ILPISWAYIR-RLE---SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302 (302)
Q Consensus 243 ~~~--~~~~~~~y~~-~l~---~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~~ 302 (302)
..+ .++.++.|++ .|. .++++.- |.| +-..=+|++. +|++.+++++.|+|.
T Consensus 287 d~L~~yl~~N~~~~~~~l~~~~P~v~v~~--p~g---TYL~WLD~r~----l~l~d~~l~~~ll~~ 343 (388)
T COG1168 287 DELLEYLKDNRDYVADFLNKHLPGVKVTE--PQG---TYLAWLDCRE----LGLDDSELAEFLLEE 343 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEec--CCC---ceeeeeeccc----cCCChHHHHHHHHHh
Confidence 111 1233335555 343 4677643 332 5677789885 578889999998863
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-14 Score=133.77 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=121.0
Q ss_pred ccccHHHHHHHHHHHHHHHhCCC--e-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHH-HHHhC
Q psy7357 28 QARGYEQLIGELETDLCEITGYD--K-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPA-SAQMA 102 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~-~~~~~ 102 (302)
.+.-+.++++++++.+++++|.+ . +.+..++|+.+.++++..+. .+++++++. ...|+.+.. .++.+
T Consensus 42 r~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~--------~~g~~~l~i~~G~fg~r~~~~a~~~ 113 (360)
T PRK05355 42 RSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL--------GGGKKADYVDTGSWSKKAIKEAKKY 113 (360)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHh
Confidence 35556799999999999999973 2 34556777787778877765 455554444 445554433 66777
Q ss_pred CCEEEEeecCC-CCCCCHHHHHH-HHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 103 GMSVEPVSVRK-DGTIDFSDLET-KVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 103 g~~v~~i~~~~-~g~iD~~~l~~-~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
|.. ..++.++ .|..+..++++ .++ +++++|.+++ .|++|++++|+++| +|++++||+++.++...+
T Consensus 114 g~~-~~~~~~~~~g~~~~~~~~~~~l~---~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~i- 182 (360)
T PRK05355 114 GEV-NVAASSEDDGFTYIPPLDEWQLS---DDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPI- 182 (360)
T ss_pred CCc-eEEecccccCCCCCCChhhccCC---CCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccC-
Confidence 865 6666654 56666666666 676 5677777776 56899997457766 799999999986655443
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+..++ |++++++||+|+ | ||+|+++++++++++++.
T Consensus 183 dv~~~--d~~~~ssqK~lg-P-----~Glg~l~~s~~~l~~~~~ 218 (360)
T PRK05355 183 DVSKF--GLIYAGAQKNIG-P-----AGLTIVIVREDLLGRALP 218 (360)
T ss_pred CHHHc--cEEEEecccccc-C-----CceEEEEECHHHHhhccc
Confidence 34444 799999999886 5 689999999988877654
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=132.73 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.+.|.|+..+++||.+...++.+++|.|+.++.+++. ++||+||++++.|-+......+.|+..+++....+
T Consensus 71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~--------~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~n 142 (557)
T COG1982 71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVL--------TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRN 142 (557)
T ss_pred cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhc--------CCCCEEEecCCccHHHHHHHHHcCCceEEecCCCC
Confidence 4899999999999999998888888888888888876 79999999999998887778889999998875432
Q ss_pred ------CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc---CC-CCcc
Q psy7357 115 ------GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL---CR-PGDY 184 (302)
Q Consensus 115 ------g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~---~~-p~~~ 184 (302)
|.|+.+.+++.+.++++.-++++++||+++|+.- |+++|.+.++..++++.+|.+++.-.... .. ..+.
T Consensus 143 p~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~-n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 143 PLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCY-NLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred ccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEee-cHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 5799999999997663333899999999999998 89999999999999999999986433221 11 1236
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
++|+++-|.||+++. .-...+|-++..
T Consensus 222 ~~~~~tqS~HK~l~a-----lSQaS~iHv~~~ 248 (557)
T COG1982 222 GADFVTQSTHKLLAA-----LSQASMIHVKDG 248 (557)
T ss_pred CceEEEechhhhhhh-----hhhhHHHhhCCC
Confidence 899999999999872 235566666643
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-13 Score=128.63 Aligned_cols=228 Identities=16% Similarity=0.186 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-HHHHHhCCCEEEEeec-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-PASAQMAGMSVEPVSV- 111 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~~~~~~~g~~v~~i~~- 111 (302)
..+.++++.+++++|.+.+ +.+.+|+.|+.. +.++. -++||+| +...|-.. .......|...+.+..
T Consensus 78 ~s~~~LE~~vAe~lG~e~a-V~v~sGTaAl~l-l~~l~-------v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d 146 (460)
T PRK13237 78 RNFYHLEETVQEYYGFKHV-VPTHQGRGAENL-LSRIA-------IKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIID 146 (460)
T ss_pred CcHHHHHHHHHHHHCCCeE-EEeCCHHHHHHH-HHHhC-------CCCcCEE--CCccchHhhHHHHHhCCcEEEeeecc
Confidence 3467999999999999984 456788877633 22221 2578864 44444333 3335667776555531
Q ss_pred ---------CCCCCCCHHHHHHHHhcc-CCCeEEEEEecC-CCc-eecc--ccHHHHHHHHHHhCCEEEEecCCccccc-
Q psy7357 112 ---------RKDGTIDFSDLETKVKKN-KETLSCLMITYP-STF-GVFE--ENITDVCELIHEHGGQVYLDGANMNAQV- 176 (302)
Q Consensus 112 ---------~~~g~iD~~~l~~~i~~~-~~~t~~V~i~~P-n~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~- 176 (302)
..+|.+|+++|+++|+++ .++++.|.+.++ |.. |... .++++|.++|+++|+.+|.|+|+...-.
T Consensus 147 ~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~ 226 (460)
T PRK13237 147 EAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAY 226 (460)
T ss_pred cccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChh
Confidence 136899999999999853 234444555544 455 4431 2799999999999999999999864411
Q ss_pred -------cc--CCCC------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCcc---cC-CCCcc-h-
Q psy7357 177 -------GL--CRPG------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPL---SS-IDSSI-G- 234 (302)
Q Consensus 177 -------~~--~~p~------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~---~~-~~~~l-~- 234 (302)
+. .+.+ --.+|++++|+||++..+ -+|++++++ ++.+++....+ |- ++.++ +
T Consensus 227 fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~------~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~gr 300 (460)
T PRK13237 227 FIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN------IGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGR 300 (460)
T ss_pred hhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC------CceEEEECCHHHHHHHHHhccccCCCcCCCChhhh
Confidence 11 1111 124799999999988753 458999984 66666654422 11 44444 2
Q ss_pred hhhHHHHhhHh-hHHHHH--------HHHH-HHh-cccccccccCCCcceeEEEEEEeccc
Q psy7357 235 AVSAAHYGSAS-ILPISW--------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDF 284 (302)
Q Consensus 235 ~~~a~~~~~~~-~~~~~~--------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~ 284 (302)
.+.| ....+. .....| .|+. +|. .|++++.+ +. -|.+.||...+
T Consensus 301 d~~a-lAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~Gvpv~~p-~g----gH~v~vda~~~ 355 (460)
T PRK13237 301 DMEA-MAIGIEESVQYEYIEHRVGQVRYLGEKLLAAGVPIVEP-VG----GHAVFLDARRF 355 (460)
T ss_pred HHHH-HHhHHHhhchHHHHHHHHHHHHHHHHHHHHCCCceecC-CC----ceEEEEEhHHh
Confidence 2332 222221 111111 3444 676 69999763 44 69999997654
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=127.86 Aligned_cols=172 Identities=18% Similarity=0.248 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc-cHHH-HHhC-CCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT-NPAS-AQMA-GMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~-~~~~-~~~~-g~~v~~i~ 110 (302)
....++++.+++++|.+.+. ...+|+.++...+.++. .++|+|+++.+.|.. +... +... +.+++.++
T Consensus 34 ~~~~~L~~~la~~~g~~~~~-v~~~g~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (333)
T PRK10534 34 PTVNALQDYAAELSGKEAAL-FLPTGTQANLVALLSHC--------ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPID 104 (333)
T ss_pred HHHHHHHHHHHHHhCCCeEE-EeCchHHHHHHHHHHhc--------CCCCeeEEechhhhhHhcCCchHHhcCceEEeec
Confidence 35678899999999998875 44556666644444432 578998988776642 2111 2233 37888888
Q ss_pred cCCCCCCCHHHHHHHHhccC---CCeEEEEEecCCCceecc--ccHHHHHHHHHHhCCEEEEecCCccccc-cc-CCCC-
Q psy7357 111 VRKDGTIDFSDLETKVKKNK---ETLSCLMITYPSTFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQV-GL-CRPG- 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~---~~t~~V~i~~Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~-~~-~~p~- 182 (302)
.++++.+|+++|+++++++. +++++|+++||++ |.+. +++++|.++|+++|+++++|+++..... .. ....
T Consensus 105 ~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~-G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~ 183 (333)
T PRK10534 105 AAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN-GKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE 183 (333)
T ss_pred CCCCCCCCHHHHHHhhcccCcCcccceEEEEecCCC-CeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH
Confidence 87788999999999996210 1688999999874 8874 1456667888999999999997542110 00 0110
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcce-eEEEeCCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMG-PIGVKSHLAPFLP 222 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G-~l~~~~~l~~~lp 222 (302)
....|.++.+++|.++. + +| +++.++++++.+.
T Consensus 184 ~~~~~~~~~~s~SK~~~~------~-~G~~~~~~~~~i~~~~ 218 (333)
T PRK10534 184 ITQYCDSFTICLSKGLGT------P-VGSLLVGNRDYIKRAR 218 (333)
T ss_pred HHhcCCEEEEEeEcCCCC------c-ccceEEcCHHHHHHHH
Confidence 11346555566776653 3 45 6777887776664
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-14 Score=130.91 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC--
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-- 113 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~-- 113 (302)
.++++.+++.++++..++..++|++ +...+ ++.+. ++||.|++++|.|+.+...+...|.+++.+|++.
T Consensus 68 ~~lr~~ia~~~~~~~~~I~it~G~~~al~~~---~~~~~-----~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~ 139 (357)
T PRK14809 68 ADLTAALADRWDVSPEQVWLANGGDGALDYL---ARAML-----DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD 139 (357)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHHHHH---HHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCc
Confidence 4677888888899888888888874 33222 23222 6899999999998777777788899999999864
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCC--C-ccCCc
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRP--G-DYGSD 187 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p--~-~~gaD 187 (302)
+..+|++++++.. +++++|+++|| |+||..- +.+++.++++.. +.++|+|.++.. +..-.++ . +..-+
T Consensus 140 ~~~~~~~~~~~~~----~~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~~~~iI~De~y~~-~~~~~~~~~~~~~~~~ 213 (357)
T PRK14809 140 DFEQTADTVLDAY----DGERIVYLTSPHNPTGSEI-PLDEVEALAERTDEETLVVVDEAYGE-FAERPSAVALVEERDD 213 (357)
T ss_pred CCCcCHHHHHHhh----cCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCccCcEEEEechhhh-ccCCchhHHHHhhCCC
Confidence 2467888777764 35688999999 5999986 466666665543 789999998631 1100010 0 11113
Q ss_pred -EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 -VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 -iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.+..|+|+.| |.|+|++++++++++++.
T Consensus 214 vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~~~ 245 (357)
T PRK14809 214 VAVLRTFSKAYGLA----GLRLGYAVVPEEWADAYA 245 (357)
T ss_pred EEEEecchhHhcCc----chhheeeecCHHHHHHHH
Confidence 4455566766654 899999999987766654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=132.80 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=134.2
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHH-----hhcC---------------------
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQ-----AQDA--------------------- 79 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~-----~~g~--------------------- 79 (302)
|.|.++.++-.++-+++|+++|.+.. -.++.+|+.|++.++.+.|.... ....
T Consensus 116 e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~ 195 (608)
T TIGR03811 116 ESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIM 195 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccc
Confidence 67888989999999999999998753 34567788888777777764310 0000
Q ss_pred ------------------------CCCCEEEEcCCCCcccHHHHHhCCC---EEEEeecCCCCCCCHHHHHHHHhcc---
Q psy7357 80 ------------------------HHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKN--- 129 (302)
Q Consensus 80 ------------------------~~~d~Vlv~~~~hg~~~~~~~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~--- 129 (302)
.+..++++|...|.+....+...|+ .++.||+|+++++|+++|++.|++.
T Consensus 196 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~ 275 (608)
T TIGR03811 196 DLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAE 275 (608)
T ss_pred ccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhc
Confidence 0001689999899888888888888 5999999999999999999999642
Q ss_pred CCCeEEEEEecCC-CceeccccHHHHHHHH---HHhCC--EEEEecCCcccc-cccCC----------------------
Q psy7357 130 KETLSCLMITYPS-TFGVFEENITDVCELI---HEHGG--QVYLDGANMNAQ-VGLCR---------------------- 180 (302)
Q Consensus 130 ~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia---~~~g~--llivD~a~~~~~-~~~~~---------------------- 180 (302)
+..+.+|+.+-++ .+|.++ |+++|+++| +++|+ ++|||+|..-.. ..+.+
T Consensus 276 g~p~~~VVataGTT~~GaiD-pl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~ 354 (608)
T TIGR03811 276 KTPILGVVGVVGSTEEGAVD-GIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFT 354 (608)
T ss_pred CCCeEEEEEEcCCcCCcccC-CHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccc
Confidence 2235566666554 789999 799999999 66887 699999863211 11111
Q ss_pred -------C-------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 181 -------P-------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 181 -------p-------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+ +-..+|-++.+.||++..|+ ..|.+++|+
T Consensus 355 ~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py-----~~G~ll~Rd 398 (608)
T TIGR03811 355 EKKEYISREVYNAYKAISEAESVTIDPHKMGYIPY-----SAGGIVIQD 398 (608)
T ss_pred cccccccHhHHHHHhcCcCceEEEeCcccccccCC-----CeEEEEEeC
Confidence 0 12468999999999999885 456777774
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=136.86 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.+.|.|+.++++||++.+.+.++++|.++.++++++. ++||+||+++..|-+....+.+.|+++++++...+
T Consensus 196 ~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn 267 (714)
T PRK15400 196 PHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRN 267 (714)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEeccccc
Confidence 5899999999999999988877777788878877765 78999999999998877778899999999976532
Q ss_pred -----CCCC-----HHHHHHHHhccCCCeE---EEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccc--ccc-c
Q psy7357 115 -----GTID-----FSDLETKVKKNKETLS---CLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNA--QVG-L 178 (302)
Q Consensus 115 -----g~iD-----~~~l~~~i~~~~~~t~---~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~--~~~-~ 178 (302)
|.++ .+.|++.|++++ +.+ ++++++|++.|++- |+++|.+++|.++ +++|+|+... +.. +
T Consensus 268 ~~Gi~g~I~~~~~~~e~i~~~i~~~p-~ak~p~~~vit~pTYdG~~y-d~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 268 AYGILGGIPQSEFQHATIAKRVKETP-NATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred ccCCccCCCccccCHHHHHHHHHhCc-cccCccEEEEECCCCccEec-CHHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 3456 899999998763 333 79999999999999 8999999999888 4689986321 111 1
Q ss_pred --CCCCccCC---c--EEEeCCCcccC
Q psy7357 179 --CRPGDYGS---D--VSHLNLHKTFC 198 (302)
Q Consensus 179 --~~p~~~ga---D--iv~~~~hK~l~ 198 (302)
..+-..|+ | +++.|+||+|+
T Consensus 344 ~~~sam~~ga~~~~~i~vtQStHKtL~ 370 (714)
T PRK15400 344 EGKCGMSGGRVEGKVIYETQSTHKLLA 370 (714)
T ss_pred CCcChhhcCCCCCCceEEEEchhhccc
Confidence 12223455 5 99999999997
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-13 Score=124.49 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++.+|++. .++..++|++.....+.. .+ ++++ |++++|.|+.+...++..|.+++.+|.++
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~---~~-----~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~-- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA---LL-----PRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA-- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH---hc-----CCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--
Confidence 689999999999974 678888888532222221 11 4555 78899998888888899999999888643
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc--cccCCCCccCCc-EE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ--VGLCRPGDYGSD-VS 189 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~--~~~~~p~~~gaD-iv 189 (302)
+ .+. +.++.++++|| ||||.+-+ +++++++.+.+++.++|+|.++.--. ..+....+ ..+ ++
T Consensus 125 ----~----~~~---~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~-~~~vi~ 192 (339)
T PRK06959 125 ----D----TLP---AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTD-RPGLVV 192 (339)
T ss_pred ----h----hcc---ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccC-CCCEEE
Confidence 1 222 34567999999 59998741 34555555667899999999863111 01111011 123 44
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.+..|.| ++.|.|+||+++++++++.+..
T Consensus 193 l~SfSK~~----gl~GlRiGy~v~~~~li~~l~~ 222 (339)
T PRK06959 193 LRSVGKFF----GLAGVRAGFVLAAPALLAALRD 222 (339)
T ss_pred EecChhhc----CCcchheEEEecCHHHHHHHHH
Confidence 44445554 4559999999999887766543
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=129.37 Aligned_cols=171 Identities=22% Similarity=0.261 Sum_probs=122.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|..+...++++.+++++|.+.+ +..++|++|+++++.++.. ..+++.|+..+..|++.....+..|.+++.++
T Consensus 87 ~~~~~~~~le~~la~~~g~~~~-~~~~SG~~An~~ai~~l~~------~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~ 159 (406)
T PRK13393 87 GTNHYHVLLEAELADLHGKEAA-LLFTSGYVSNWAALSTLGS------RLPGCVILSDELNHASMIEGIRHSRAEKRIFR 159 (406)
T ss_pred CChHHHHHHHHHHHHHhCCCcE-EEeCCcHHHHHHHHHHhhc------CCCCCEEEEccchhHHHHHHHHHcCCeEEEeC
Confidence 4456789999999999998654 5667888777666654431 02567777777888877766677788887776
Q ss_pred cCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-c-----CCCC
Q psy7357 111 VRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-L-----CRPG 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~-----~~p~ 182 (302)
. .|++++++.++... +++++|+++++ |++|.+. |+++|.++|+++|+++++|++|..+..+ . ..++
T Consensus 160 ~-----~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~ 233 (406)
T PRK13393 160 H-----NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIA-PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREG 233 (406)
T ss_pred C-----CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcC
Confidence 4 47888888886432 36788889887 5889999 7999999999999999999998644421 1 0111
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....|+++.+..|.|+. +| |++++++++.+.+
T Consensus 234 ~~~~~~i~~~tlsKa~g~------~G-G~~~~~~~~~~~l 266 (406)
T PRK13393 234 LADRLTIIEGTLAKAFGV------MG-GYITGSAALCDFI 266 (406)
T ss_pred CCCCCeEEEEeCchhhcc------cC-ceeeCCHHHHHHH
Confidence 11258888777887763 22 7888776655443
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=129.22 Aligned_cols=170 Identities=18% Similarity=0.161 Sum_probs=115.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++.+.+.+..|.+ ..++..++|++ +... +++.+. .++||.|+++++.|+.+...++..|.
T Consensus 55 ~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~---~~~~l~----~~~gd~Vl~~~p~y~~~~~~~~~~g~ 127 (357)
T TIGR03539 55 TWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW---LPTLLG----LGPGDTVVIPELAYPTYEVGALLAGA 127 (357)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH---HHHHHc----CCCCCEEEECCCCcHHHHHHHHhcCC
Confidence 5788888888888888776654 45777778874 3322 222110 15899999999999888777788899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--c
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG--L 178 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~--~ 178 (302)
+++.++ |+++++ . +++++|++++| |++|..- +++++|.++|+++|+++|+|.++.. .... .
T Consensus 128 ~~~~v~-------~~~~l~---~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 194 (357)
T TIGR03539 128 TPVAAD-------DPTELD---P---VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPV 194 (357)
T ss_pred EEeccC-------ChhhcC---c---cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCc
Confidence 888764 233222 2 57889999999 5999863 1578899999999999999998631 1111 0
Q ss_pred --CCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 --CRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 --~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+ +...--+++.+.+|.|+. .|.|+|++++++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~vi~~~S~SK~~~~----~G~R~G~~i~~~~~~~~~~ 240 (357)
T TIGR03539 195 SILDPRVCGGDHTGLLAVHSLSKRSNL----AGYRAGFVAGDPALVAELL 240 (357)
T ss_pred cceecccCCCccccEEEEeccccccCC----CceeEEEEecCHHHHHHHH
Confidence 011 111113666666776654 4899999998877766553
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=127.32 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|.+ ++..++|++..+.. .++ . .++|+|++++|.|+.+...++..|++++.+|.+
T Consensus 52 ~~Lr~~ia~~~~~~--~I~it~Gs~~al~~--~~~-~------~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~---- 116 (330)
T PRK05664 52 DGLEAAARAYYGAP--QLLPVAGSQAAIQA--LPR-L------RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA---- 116 (330)
T ss_pred HHHHHHHHHHhCCC--CEEECcCHHHHHHH--HHH-c------cCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----
Confidence 67889999999975 56677787422121 222 1 578999999999988888899999999999863
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc--cccCCCCccCCc-EEE
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ--VGLCRPGDYGSD-VSH 190 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~--~~~~~p~~~gaD-iv~ 190 (302)
++++.++ ++++++++|| ||||.+- .++++|.++|+++|+++|+|.++.-.. ..+..... ..+ +++
T Consensus 117 ----~~~~~~~----~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~-~~~vi~~ 187 (330)
T PRK05664 117 ----EVEAALD----SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAH-RPGLIVL 187 (330)
T ss_pred ----hHhhhhc----CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCccccccccc-CCCEEEE
Confidence 4555554 5667899999 5999873 157777778889999999999863111 01111111 123 455
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+.+|+|+ +.|.|+||+++++++++.+.
T Consensus 188 ~SfSK~~g----l~GlRiG~~v~~~~l~~~~~ 215 (330)
T PRK05664 188 RSFGKFFG----LAGARLGFVLAEPALLRALA 215 (330)
T ss_pred eecccccc----CCCcceEEEEeCHHHHHHHH
Confidence 55556555 44999999999887766654
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=122.83 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=145.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHH-hCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQ-MAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~-~~g~~v 106 (302)
-|..+...++++++++++|. .+.++..+|++++..++.+.. +++..|++.+..|-.... ..+ ..+...
T Consensus 31 YG~D~~~~~~e~~~ae~~g~-~a~~Fv~sGT~aN~lal~~~~--------~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~ 101 (342)
T COG2008 31 YGEDPTTNALEQRIAELFGK-EAALFVPSGTQANQLALAAHC--------QPGESVICHETAHIYTDECGAPEFFGGGQK 101 (342)
T ss_pred CCCCHHHHHHHHHHHHHhCC-ceEEEecCccHHHHHHHHHhc--------CCCCeEEEeccccceecccCcHHHHcCCce
Confidence 36678999999999999999 555667789988866655543 678888998888864432 222 333333
Q ss_pred EEeecCCCCCCCHHHHHHHHhc----cCCCeEEEEEecCCCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKK----NKETLSCLMITYPSTFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGLC 179 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~----~~~~t~~V~i~~Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~~ 179 (302)
..+.-.++|.+++++|++.+.. |.+...++.+++++..|.+- +.+++|.++||++|+.+++|+|-.+ +...+.
T Consensus 102 ~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg 181 (342)
T COG2008 102 LPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG 181 (342)
T ss_pred eccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC
Confidence 3333346899999999998863 22334445555567778762 1589999999999999999998642 222222
Q ss_pred CC-C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC------CCCcccCCCCcchhhhHHHHhhHh--hHH
Q psy7357 180 RP-G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL------PVHPLSSIDSSIGAVSAAHYGSAS--ILP 248 (302)
Q Consensus 180 ~p-~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l------pg~~~~~~~~~l~~~~a~~~~~~~--~~~ 248 (302)
.+ . ..++|++++.+.|.++ .|...+++.+.++++++ -|..+- ...-++|.+-..+. ++.
T Consensus 182 ~~~~~~~~~~D~v~~~~tK~g~------~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~----k~r~laA~~~~~l~~~~~~ 251 (342)
T COG2008 182 VALKTIKSYVDSVSFCLTKGGG------APVGAIVFGNRDFAKRARRWRKRAGGLMR----KARFLAAQGLYALEDDVWR 251 (342)
T ss_pred CCHHHHHhhCCEEEEecccCCc------ceeeeEEEcCHHHHHHHHHHHHHhcccHh----hhhHHHHHHHHHHhccHHH
Confidence 11 1 2378999998888554 45667777777665544 333321 11223322222221 211
Q ss_pred -HHH-HH--HHHHh------cccccccccCCCcceeEEEEEEecc
Q psy7357 249 -ISW-AY--IRRLE------SHYKTLFRSSRSGLVAHEFVIDVRD 283 (302)
Q Consensus 249 -~~~-~y--~~~l~------~g~~~~~~~~~~~~~~he~~~~~~~ 283 (302)
.+. .. +++|. .|+++.++ +. .|++-+++++
T Consensus 252 ~~~~Han~mA~~La~~~~~~~G~~~~~~-~~----tN~vf~~l~~ 291 (342)
T COG2008 252 LAADHANAMAARLAEGLEAKPGVKLAFP-VE----TNMVFVRLPE 291 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCceeccC-Cc----ccEEEEECCh
Confidence 111 22 33333 37888775 55 8999999884
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-12 Score=116.61 Aligned_cols=170 Identities=25% Similarity=0.350 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-------hCCC-
Q psy7357 34 QLIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-------MAGM- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-------~~g~- 104 (302)
+...++.+.|+++++ ++. .++.+||++|+++++...|.|.. +.++...|-..+..||-.....+ ..++
T Consensus 84 ~~~~~la~~L~~~s~~~d~-vff~NSGaEA~EaAiKlARk~~~--~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~ 160 (404)
T COG4992 84 EPQAELAEKLVELSPFADR-VFFCNSGAEANEAALKLARKYTG--DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG 160 (404)
T ss_pred hHHHHHHHHHHhhCccccE-EEEcCCcHHHHHHHHHHHHHHcC--CCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence 456788889999997 555 46789999999999999998742 11233344444567776544322 1122
Q ss_pred ----EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 105 ----SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 105 ----~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
.+..+|+ -|+++++++|+ ++|++|++.-- ...|++.+ -+++++++|++||+++|+|++|. ++
T Consensus 161 Pl~~g~~~vpf-----nDi~al~~ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt-G~- 230 (404)
T COG4992 161 PLLPGFRHVPF-----NDIEALEAAID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQT-GL- 230 (404)
T ss_pred CCCCCceecCC-----CCHHHHHHHhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEecccc-CC-
Confidence 2334444 49999999999 79999999862 46787743 48999999999999999999873 22
Q ss_pred ccCCCCcc--------CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC-CCCc
Q psy7357 177 GLCRPGDY--------GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL-PVHP 225 (302)
Q Consensus 177 ~~~~p~~~--------gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l-pg~~ 225 (302)
.+.|++ .+||++. .|.|+ ||-.+|.+++++.+.+.+ ||..
T Consensus 231 --GRTGk~fA~e~~gV~PDI~tl--aK~Lg-----GG~PigA~la~~~~~~~~~~G~H 279 (404)
T COG4992 231 --GRTGKLFAYEHYGVEPDILTL--AKALG-----GGFPIGAMLATEEIASAFTPGDH 279 (404)
T ss_pred --CccchHHHHHHhCCCCCEEEe--ecccc-----CCccceeeEEchhhhhcCCCCcc
Confidence 233332 3699998 58886 467788888886656544 4443
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=127.71 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=114.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC----
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM---- 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~---- 104 (302)
.+|..++++++.+.+.+ .+++..++..++|++..+..+..+ + .++|+|++++|.|+.+...++..|.
T Consensus 74 ~~g~~~lr~aia~~~~~-~~~~~d~I~it~Ga~~al~~l~~l---~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 144 (402)
T TIGR03542 74 EQGYPFLREAIAENDYR-GRIDPEEIFISDGAKCDVFRLQSL---F-----GSDNTVAVQDPVYPAYVDSNVMAGRAGVL 144 (402)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCHHHEEECCCcHHHHHHHHHh---c-----CCCCEEEEeCCCCcchHHHHHHcCCcccc
Confidence 46776766666665432 156667788888875322222222 1 5789999999999988888888999
Q ss_pred -------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-
Q psy7357 105 -------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN- 173 (302)
Q Consensus 105 -------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~- 173 (302)
+++.+|.++++..+++ +++ . +++++|+++|| ||||..- .++++|.++|+++|+++|+|.++.-
T Consensus 145 ~~~~~~~~~~~v~~~~~~~~~~~-~~~--~---~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~ 218 (402)
T TIGR03542 145 DDDGRYSKITYLPCTKENNFIPD-LPE--E---PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAF 218 (402)
T ss_pred ccccccceEEEeecchhhCCCCC-ccc--c---CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhh
Confidence 9999998653322222 111 1 57899999999 5999873 2589999999999999999998631
Q ss_pred cccc-cCCC-Ccc----CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 174 AQVG-LCRP-GDY----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 174 ~~~~-~~~p-~~~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
.... ...+ ... .--|++.|..|.|+.| |.|+|+++++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p----GlRiG~~i~~~~l~ 265 (402)
T TIGR03542 219 ISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT----GVRLGWTVVPKELT 265 (402)
T ss_pred ccCCCCCcchhhCCCCcccEEEEecCccccCCC----CcceEEEEecHHHh
Confidence 1111 1111 011 1124466667777655 89999999987765
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=118.20 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcC-CCCCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDA-HHRNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~-~~~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++++++++.+.+ +..+||++|+++++..++.+... .|. ..+++|+.. ...||.........+-
T Consensus 82 ~~~~~l~~~l~~~~~~~~~-~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~ 160 (396)
T PRK04073 82 DQLGPWYEKVAKLTGKDMV-LPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRG 160 (396)
T ss_pred HHHHHHHHHHHhcCCCCeE-EEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccC
Confidence 4456788899998887654 56789999988888888766321 121 123555555 4578877554432221
Q ss_pred ------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 105 ------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 105 ------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.+..+|. -|++++++.++ +++++|+++.| |++|.+.++ +++|.++|+++|+++|+|+++. +
T Consensus 161 ~~~~~~~~~~~~~-----~d~~~l~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g 231 (396)
T PRK04073 161 FGPMLPGIKKIPY-----GDLEALKAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-G 231 (396)
T ss_pred CCCCCCCceEeCC-----CCHHHHHHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-C
Confidence 1223332 28899999997 78888888887 688987532 8999999999999999999874 2
Q ss_pred ccc----c-CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVG----L-CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~----~-~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. . .......+|++++ +|+++ +||.++|++++++++++.+.
T Consensus 232 ~g~~g~~~~~~~~~~~pdi~~~--sK~lg----~gg~~ig~~~~~~~i~~~~~ 278 (396)
T PRK04073 232 LGRTGKLFACDWDNVTPDMYIL--GKALG----GGVFPISCVAANRDILGVFT 278 (396)
T ss_pred CCcCcHHHHhhhcCCCCCEEEe--ccccc----CCCCcceEEEEcHHHHhhhc
Confidence 221 0 0111234688876 47664 56788999999988777663
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-13 Score=124.47 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD- 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~- 114 (302)
..++++.+++.++++..++..++|++.. ...+++.+ .+ +.|++++|.|+.+...++..|.+++.+|.+.+
T Consensus 56 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~--l~~~~~~~------~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~ 126 (354)
T PRK06358 56 YLELRKRIASFEQLDLENVILGNGATEL--IFNIVKVT------KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEET 126 (354)
T ss_pred HHHHHHHHHHHhCCChhhEEECCCHHHH--HHHHHHHh------CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCcccc
Confidence 3578888999999988888888888522 22223322 23 57889999988887788899999999998753
Q ss_pred -CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccccc-CCC---CccC
Q psy7357 115 -GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGL-CRP---GDYG 185 (302)
Q Consensus 115 -g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~-~~p---~~~g 185 (302)
..+| +++.+.+. +++++|++++| |+||..- +.+++|.++|+++|+++++|.++.- ..... .++ ....
T Consensus 127 ~~~~d-~~~~~~~~---~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~ 202 (354)
T PRK06358 127 NFAAN-EIVLEEIK---EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENF 202 (354)
T ss_pred CCCcc-HHHHHhhc---cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCC
Confidence 3688 66666665 56888999999 5999873 1588999999999999999998631 11110 000 0111
Q ss_pred Cc-EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 186 SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 186 aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
.. |++.|..|+|+. .|.|+||++++ +.+.+.+
T Consensus 203 ~~vi~~~S~SK~~gl----~G~RiG~lv~~~~~~~~~~ 236 (354)
T PRK06358 203 KNLIIIRAFTKFFAI----PGLRLGYGLTSNKNLAEKL 236 (354)
T ss_pred CCEEEEEechhhccC----cchhheeeecCCHHHHHHH
Confidence 23 455555666654 49999999985 4554433
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=121.25 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..+++.+++.+|. ++..++|++ +. ..+..+ . .++|+|++++|.|+.+...++..|.+++.++
T Consensus 43 ~~l~~~ia~~~~~---~I~vt~G~~~al-~~~~~~--~------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~----- 105 (311)
T PRK08354 43 EWLEEEFSKLFGE---PIVITAGITEAL-YLIGIL--A------LRDRKVIIPRHTYGEYERVARFFAARIIKGP----- 105 (311)
T ss_pred HHHHHHHHHHHCC---CEEECCCHHHHH-HHHHHh--h------CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC-----
Confidence 4567788888884 456677764 33 222221 1 4689999999999988888999999997764
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeC
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLN 192 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~ 192 (302)
+|++.+++.++ +++.++++|| ||||.+- +++++|.++|+++|+++|+|.++.--...-..+ ...--+++.+
T Consensus 106 -~d~~~l~~~~~----~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~-~~~~vi~~~S 179 (311)
T PRK08354 106 -NDPEKLEELVE----RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP-EGENIIKLRT 179 (311)
T ss_pred -CCHHHHHHhhc----CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc-CCCcEEEEec
Confidence 57899988875 3567899999 5999873 257888888999999999999862111010111 1222355666
Q ss_pred CCcccCCCCCCCCCcceeEEE
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~ 213 (302)
..|+|+.| |.|+|++++
T Consensus 180 ~SK~~~l~----GlRiG~~v~ 196 (311)
T PRK08354 180 FTKSYGLP----GIRVGYVKG 196 (311)
T ss_pred cHhhcCCc----cceeeeeee
Confidence 67777655 899999998
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=127.61 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=117.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccH-HHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNP-ASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~-~~~~~~g 103 (302)
+.-+.+.++++++.++++++.+. +.+..+||+.|.++++..+. .+++++++. ...||.+. ..++..|
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~--------~~~~~~l~i~~G~fg~r~~~~a~~~g 103 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL--------AEGKVADYIVTGAWSKKAAKEAKKYG 103 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhC
Confidence 44566999999999999999732 34555678888777776654 356665544 34555443 3677889
Q ss_pred CEEEEeecCC----CCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 104 MSVEPVSVRK----DGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 104 ~~v~~i~~~~----~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
. +..+..++ ...+|+++++ ++ ++++.|.+++ .|++|+.. + ++++.++++++||+++..+...+
T Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~v~~th~ETstGv~~-~-----~l~~~~~~l~iVDavss~g~~~i 171 (349)
T TIGR01364 104 V-VNVVASGKEGNYTKIPDPSTWE--IS---EDAAYVHYCANETIHGVEF-R-----ELPDVKNAPLVADMSSNILSRPI 171 (349)
T ss_pred C-cEEEeccccCCCCCCCCHHhcC--CC---CCCCEEEEcCCCCcccEec-c-----eecccCCCeEEEEccccccCccC
Confidence 8 77777542 2346776655 23 5677787776 46899987 3 56667899999999986555543
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+..+ .|++++++||+|+ | ||+|+++++++++++++.
T Consensus 172 -d~~~--~d~~~~ssqK~lg-P-----~Glg~l~~s~~~~~~~~~ 207 (349)
T TIGR01364 172 -DVSK--FGLIYAGAQKNIG-P-----AGLTVVIVRKDLLGRASR 207 (349)
T ss_pred -CHHH--ccEEEEecccccC-C-----CceEEEEECHHHHhhccc
Confidence 3334 4699999999886 5 789999999887766643
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.8e-13 Score=129.52 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=120.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
-|..+...++++.++++++.+.. +...+|..++.+++.++. +++|.|++.+..|++....+...+.+++.+
T Consensus 150 yg~~~~~~~Lee~La~~~~~~~~-i~~s~G~~a~~sai~a~~--------~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~ 220 (481)
T PLN02822 150 YGTIDVHLDCETKIAKFLGTPDS-ILYSYGLSTIFSVIPAFC--------KKGDIIVADEGVHWGIQNGLYLSRSTIVYF 220 (481)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCE-EEECCHHHHHHHHHHHhC--------CCCCEEEEeCCccHHHHHHHHHcCCeEEEE
Confidence 36678899999999999998754 444456555545544432 688999988888877666677778899998
Q ss_pred ecCCCCCCCHHHHHHHHhcc------CCCe-EEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc---
Q psy7357 110 SVRKDGTIDFSDLETKVKKN------KETL-SCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL--- 178 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~------~~~t-~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~--- 178 (302)
+.+ |.++++..+++. ++++ ++|++..+ +++|.+. |+++|.++|++||+++++|+++..+..+-
T Consensus 221 ~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~-~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~ 294 (481)
T PLN02822 221 KHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIA-PLDEIVRLKEKYRFRVLLDESNSFGVLGKSGR 294 (481)
T ss_pred CCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCC
Confidence 864 566666665431 1334 67777766 4789999 79999999999999999999986433210
Q ss_pred ---CCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 ---CRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ---~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...+ ...+|+++++.+|+|+.+ | |++++++++++.+
T Consensus 295 G~~e~~~v~~~~~dii~~s~sKalg~~----G---G~i~g~~~ii~~~ 335 (481)
T PLN02822 295 GLSEHFGVPIEKIDIITAAMGHALATE----G---GFCTGSARVVDHQ 335 (481)
T ss_pred ChHHHcCCCCCCCeEEEecchhhhhhC----C---eEEEcCHHHHHHH
Confidence 0001 124689999888988632 2 8999988776654
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-13 Score=124.37 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|.+..++..++|++. +...+++ + .++ .+++..|.|..+...++..|.+++.+|.++++.
T Consensus 61 ~~lr~aia~~~~~~~~~I~it~Ga~~--al~~~~~-l------~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~ 130 (349)
T PRK07908 61 RRARAAVAARHGRTPDEVLLLAGAAE--GFALLAR-L------RPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDPPFR 130 (349)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHH--HHHHHHh-c------CCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCcccC
Confidence 45667777788988888888888752 2222222 2 344 556677777666667788999999999987677
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccccCCCCccC-Cc-EEEeC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVGLCRPGDYG-SD-VSHLN 192 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~p~~~g-aD-iv~~~ 192 (302)
+|++++ + +++++++++|| |+||.+. +.++|.++|++ +.++|+|.++.- ..+...+..... .+ +++.+
T Consensus 131 ~d~~~l----~---~~~~~i~l~np~NPTG~~~-~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S 201 (349)
T PRK07908 131 LDPAAV----P---DDADLVVIGNPTNPTSVLH-PAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRS 201 (349)
T ss_pred cChhHh----c---cCCCEEEEcCCCCCCCCCc-CHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEee
Confidence 888754 3 56788999999 5999998 68999999964 778889998631 111111111111 24 44457
Q ss_pred CCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+|+|+.| |.|+|++++++++++.+.
T Consensus 202 ~SK~~~l~----GlRiG~~~~~~~~~~~~~ 227 (349)
T PRK07908 202 LTKTWSLA----GLRVGYALGAPDVLARLT 227 (349)
T ss_pred cccccCCc----cceeeeeecCHHHHHHHH
Confidence 78877654 899999999887776654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=130.91 Aligned_cols=164 Identities=14% Similarity=-0.008 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
.+.+.|+.++++||++.+.+.++++|.++.++++++. ++||+||+++..|-+....+.+.|+++++++...
T Consensus 196 ~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n 267 (713)
T PRK15399 196 PHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAA--------PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRN 267 (713)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeeEEeccccc
Confidence 5889999999999999988877777788878887765 7899999999999887778889999999997543
Q ss_pred -C---CCCCH-----HHHHHHHhccCC--CeEEEEEecCCCceeccccHHHHHHHHHHhCCEE-EEecCCccc--ccc-c
Q psy7357 114 -D---GTIDF-----SDLETKVKKNKE--TLSCLMITYPSTFGVFEENITDVCELIHEHGGQV-YLDGANMNA--QVG-L 178 (302)
Q Consensus 114 -~---g~iD~-----~~l~~~i~~~~~--~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~ll-ivD~a~~~~--~~~-~ 178 (302)
. |.++. +.++++|+++++ +++++++++|++.|++- |+++|.+++ |+.+ ++|+|+... +.. +
T Consensus 268 ~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~y-d~~~I~~~~---g~~~ilvDEAhgah~~F~p~~ 343 (713)
T PRK15399 268 ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLY-NTDWIKQTL---DVPSIHFDSAWVPYTHFHPIY 343 (713)
T ss_pred ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceee-CHHHHHHHh---CCCEEEEeccchhhhhcCccc
Confidence 2 34566 999999987642 23689999999999999 899999998 6665 699987321 111 1
Q ss_pred C--CCCcc--CCcEE---EeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 179 C--RPGDY--GSDVS---HLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 179 ~--~p~~~--gaDiv---~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
. .+... ++|.+ +.|+||+|+.- -+..+|-++.
T Consensus 344 ~~~sam~~~~~aD~~i~~tQStHKtL~al-----TQaS~iHvk~ 382 (713)
T PRK15399 344 QGKSGMSGERVPGKVIFETQSTHKMLAAF-----SQASLIHIKG 382 (713)
T ss_pred CCcChhhCCCCCCeeeeeeeehhcccccc-----chheeeeecC
Confidence 1 11112 57887 99999999732 1456665544
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=122.11 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=117.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhC-CCe---eeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITG-YDK---ISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g-~~~---~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
..|.| .+|..+++..+.+.+.+..+ .+. .++..++|++ +... .++.+. +++|+|++++|.|+.+
T Consensus 38 ~~Y~~---~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~---~~~~l~-----~~gd~Vlv~~P~y~~~ 106 (388)
T PRK08637 38 FPYAP---PQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSL---VADLFV-----DQGDTVLLPDHNWGNY 106 (388)
T ss_pred cCCCC---CCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHH---HHHHhc-----CCCCEEEEcCCCCccH
Confidence 44544 68988888888777765432 221 3456677764 3322 222221 6899999999999888
Q ss_pred HHHH-HhCCCEEEEeecC-CCCCCCHHHHHHHHhc-cCCCeEEEEEecC-CCceecc--ccHHHHHHHHHH-----hCCE
Q psy7357 96 PASA-QMAGMSVEPVSVR-KDGTIDFSDLETKVKK-NKETLSCLMITYP-STFGVFE--ENITDVCELIHE-----HGGQ 164 (302)
Q Consensus 96 ~~~~-~~~g~~v~~i~~~-~~g~iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~-----~g~l 164 (302)
.... ...|.+++.+|.+ +++.+|++++++.++. .++.+.+++++|| ||||..- ..+++|.++|++ ++++
T Consensus 107 ~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~ 186 (388)
T PRK08637 107 KLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVV 186 (388)
T ss_pred HHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 7754 4689999999984 4556899999998861 1244566778888 6999762 257888887775 8999
Q ss_pred EEEecCCc-cccccc-CCC--C---ccCCcEE---EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 165 VYLDGANM-NAQVGL-CRP--G---DYGSDVS---HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 165 livD~a~~-~~~~~~-~~p--~---~~gaDiv---~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+|.|.++. .....- ..+ . +..-+++ +.++.|.++.| |.|+||+.+.
T Consensus 187 iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~p----GlRlG~~~~~ 242 (388)
T PRK08637 187 AVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVW----GFRVGFITFG 242 (388)
T ss_pred EEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCc----ccceEEEEEc
Confidence 99999863 111110 000 0 1111332 23667877765 8999999865
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-12 Score=122.35 Aligned_cols=178 Identities=20% Similarity=0.165 Sum_probs=128.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+....|... .++..++|++ |... .++.+. ++||.|++-+|.|.......+..|++
T Consensus 131 ~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l---~~~~l~-----~pGd~v~vE~PtY~~~~~~~~~~g~~ 202 (459)
T COG1167 131 TAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDL---LLRLLL-----DPGDTVLVEDPTYPGALQALEALGAR 202 (459)
T ss_pred CCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHH---HHHHhC-----CCCCEEEEcCCCcHHHHHHHHHcCCc
Confidence 68999999999999987777654 4788888885 3322 222221 68999999999987667788899999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec--CCCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccccCC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY--PSTFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGLCR 180 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~ 180 (302)
++.||+|++| +|+|+|++.+.++ ++++++++. -||+|..- +.-++|.++|+++++++|=|..+.. .......
T Consensus 203 ~~~vp~d~~G-~~~e~le~~~~~~--~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~ 279 (459)
T COG1167 203 VIPVPVDEDG-IDPEALEEALAQW--KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPP 279 (459)
T ss_pred EEecCCCCCC-CCHHHHHHHHhhc--CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCC
Confidence 9999998655 8999999999864 455565543 26888762 2568999999999999998876521 1111111
Q ss_pred C--C---ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 181 P--G---DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 181 p--~---~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
| . ..+-=|.++++.|+++ | |-|+||+++++++++++-
T Consensus 280 ~~l~~ld~~~rViy~gSFSK~l~-P----glRlG~vv~p~~~~~~~~ 321 (459)
T COG1167 280 PPLKALDAPGRVIYLGSFSKTLA-P----GLRLGYVVAPPELIEKLL 321 (459)
T ss_pred CChHhhCCCCCEEEEeeehhhcc-c----ccceeeeeCCHHHHHHHH
Confidence 1 1 1122367777888887 3 669999999988776653
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-13 Score=126.91 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=117.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~ 97 (302)
.-|.+ .+|..++++.+.+.+.+..|. +..++..++|++. +...++..+....+.+++|.|++ .+|.|+.+..
T Consensus 68 ~~Y~~---~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~--al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~ 142 (416)
T PRK09440 68 GNYDG---PQGKDELIEALAALLNERYGWNISPQNIALTNGSQS--AFFYLFNLFAGRRADGSLKKILFPLAPEYIGYAD 142 (416)
T ss_pred ccCCC---CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHH--HHHHHHHHHhccccCCCCCeEEEecCCCchhhHH
Confidence 34555 688888999999988887775 4457888888852 21222222211001125789999 5898877766
Q ss_pred HHHhCC----CEEEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEE
Q psy7357 98 SAQMAG----MSVEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 98 ~~~~~g----~~v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~lliv 167 (302)
.+...+ ..+..++++.+ ..+|+++|+ ++ +++++++++|| ||||.+- ..+++|.++|+++++++|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 217 (416)
T PRK09440 143 AGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID---EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLI 217 (416)
T ss_pred HhhccCceeecccccccccccccccCCCHHHcc--cC---CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEE
Confidence 443222 22233344332 368999987 34 67899999999 5999873 2588999999999999999
Q ss_pred ecCCccccccc----CCCCccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 168 DGANMNAQVGL----CRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 168 D~a~~~~~~~~----~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|.++....... ..+. +.-. |++.|.+|+ + +.|.|+|++++++++++.+.
T Consensus 218 De~Y~~~~~~~~~~~~~~~-~~~~vI~~~SfSK~-~----~pGlRiG~~i~~~~l~~~~~ 271 (416)
T PRK09440 218 DNAYGPPFPGIIFSEATPL-WNPNIILCMSLSKL-G----LPGVRCGIVIADEEIIEALS 271 (416)
T ss_pred eCCccccCCCcchhhcCcc-ccCCeEEEeccccc-C----CCcceEEEEeCCHHHHHHHH
Confidence 99873111000 0111 1113 445555663 4 45899999999887766553
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-13 Score=126.67 Aligned_cols=165 Identities=10% Similarity=0.047 Sum_probs=113.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHHhC--
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQMA-- 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~~~-- 102 (302)
+.-+.+.+++.++.+++++|++. ..+. +++|+.+..+++.++. .+ +.+++....|++... .++..
T Consensus 36 ~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--------~~-~~l~i~~G~~~~~~~~~a~~~~~ 106 (361)
T TIGR01366 36 QAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--------EK-KSLHLSFGEFSSKFAKAVKLAPW 106 (361)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--------cc-cccEEecCHHHHHHHHHHHhhhc
Confidence 44567899999999999999843 2333 4667777656555542 22 344555677776544 33331
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
..++..++.++...+|. .++ ++++.|.+++ .|.+|++. |+++| +|++|+++++|+++..+...+ +.
T Consensus 107 ~~~~~~~~~~~~~~~~~-----~~~---~~~~lV~~~h~et~tG~~~-pi~~I---~~~~g~~~iVDavqs~g~~~i-dv 173 (361)
T TIGR01366 107 LGEPIIVTADPGSAPEP-----QAD---PGVDVIAWAHNETSTGVAV-PVRRP---EGSDDALVVIDATSGAGGLPV-DI 173 (361)
T ss_pred cCCceEEecCCCCCCCC-----ccC---CCCCEEEEcccCCccceec-ccccc---cccCCCeEEEEcCccccCCCC-CH
Confidence 23777788766544444 233 6888888777 57899999 79887 589999999999986655544 23
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. .+|++++++||+|+.| ||++++++++++++++.
T Consensus 174 ~--~~D~~~~s~~K~lg~~-----~Gl~~~~~s~~~~~~~~ 207 (361)
T TIGR01366 174 A--ETDVYYFAPQKNFASD-----GGLWLAIMSPAALERIE 207 (361)
T ss_pred H--HCCEEEEEchhhcCCC-----CceEEEEECHHHHhhhh
Confidence 3 2899999999999754 46888888887766554
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-12 Score=119.49 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcCC-CCCEEE-EcCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDAH-HRNVCL-IPVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~~-~~d~Vl-v~~~~hg~~~~~~~~~g------- 103 (302)
+...++++.+++++|.+. .+..+||++|+++++.+++.+... .|.. .+++|+ .....||.........+
T Consensus 83 ~~~~~l~~~l~~~~~~~~-~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~ 161 (401)
T PRK00854 83 DQLAPLYEELAALTGSHK-VLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGG 161 (401)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccccc
Confidence 456789999999999865 456789999988888888765321 1211 234544 45567877654332111
Q ss_pred -----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 -----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 -----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
..+..+|. .|+++|++.+. +++++|++++| |++|.+.+ .+++|+++|+++|+++|+|+++. +
T Consensus 162 ~~~~~~~~~~~~~-----~d~~~le~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g 232 (401)
T PRK00854 162 FGPFTPGFRVVPF-----GDAEALEAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-G 232 (401)
T ss_pred CCCCCCCeEEeCC-----CCHHHHHHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C
Confidence 12333332 48999999997 78999999998 58898752 29999999999999999999984 2
Q ss_pred ccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++... ......+|+++.+ |+|++ |.+++|++++++++++.+.
T Consensus 233 ~g~~g~~~~~~~~g~~~D~~~~~--K~l~g----g~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 233 LGRTGKLLAEEHEGIEADVTLIG--KALSG----GFYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred CCCCchHhHHhhcCCCCCEEEec--ccccC----CccCeEEEEEcHHHHhccc
Confidence 32110 0111246998874 88863 3468999999988777664
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=117.19 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCCEEEE---e
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGMSVEP---V 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~~v~~---i 109 (302)
+...++.++++++++.+. .+...+|++|+++++.+++.+....|...+++|++.++ .||.........+..... .
T Consensus 73 ~~~~~la~~l~~~~~~~~-v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 151 (389)
T PRK01278 73 PEQERLAERLVENSFADK-VFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFG 151 (389)
T ss_pred hHHHHHHHHHHhhCCCCE-EEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCC
Confidence 455678889999887664 45678899998888888887644333233457777766 555554443333321111 1
Q ss_pred ecCCCC----CCCHHHHHHHHhccCCCeEEEEEecCC-Ccee-c--cccHHHHHHHHHHhCCEEEEecCCcccccccCC-
Q psy7357 110 SVRKDG----TIDFSDLETKVKKNKETLSCLMITYPS-TFGV-F--EENITDVCELIHEHGGQVYLDGANMNAQVGLCR- 180 (302)
Q Consensus 110 ~~~~~g----~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~-~--~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~- 180 (302)
|..++. ..|+++++++++ +++++|+++.++ +.|. . .+++++|+++|+++|+++|+|+++. +++....
T Consensus 152 ~~~~~~~~~~~~d~~~l~~~l~---~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~ 227 (389)
T PRK01278 152 PLVPGFDQVPFGDIEALKAAIT---PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKL 227 (389)
T ss_pred CCCCCceEeCCCCHHHHHHhhC---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcc
Confidence 111111 258999999997 689999988654 5663 2 2269999999999999999999874 2211100
Q ss_pred -C-C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 181 -P-G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 181 -p-~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+ . ....|++++ .|+++ +|.++|++++++++++.+.
T Consensus 228 ~~~~~~~~~pdi~t~--sK~l~-----~G~~ig~~~~~~~~~~~~~ 266 (389)
T PRK01278 228 FAHEWAGVTPDIMAV--AKGIG-----GGFPLGACLATEEAAKGMT 266 (389)
T ss_pred eeecccCCCCCEEEE--ehhcc-----CCcceEEEEEcHHHHhccC
Confidence 0 1 123577766 58776 4688999999988777664
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-13 Score=126.03 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCC-ee--eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYD-KI--SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~-~~--~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~~~g~~ 105 (302)
.-+.+.++++++.+++++|++ .. .+..+||+.+..++..++. . .+ +++++|++ ..++.+.. .++..|++
T Consensus 40 ~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~---~-~~-~~~~~i~~--g~~~~~~~~~a~~~g~~ 112 (355)
T cd00611 40 KDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLL---G-DK-GTADYVVT--GAWSAKAAKEAKRYGGV 112 (355)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC---C-CC-CeEEEEEC--CHHHHHHHHHHHhcCCC
Confidence 566789999999999999973 22 3333446666545555442 1 11 24555444 23332322 56788999
Q ss_pred EEEeecCCCCCC-C-HHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 106 VEPVSVRKDGTI-D-FSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 106 v~~i~~~~~g~i-D-~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++.++.+++|.. | ++..+..++ ++++.|.+++ .|.+|+..+ ++++.+|++++||+++..+...+ +..
T Consensus 113 ~~~~~~~~~g~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG~~~~------~i~~~~g~~~~VDa~qs~g~~~i-dv~ 182 (355)
T cd00611 113 VVIVAAKEEGKYTKIPDVETWDLA---PDAAYVHYCSNETIHGVEFD------EVPDTGGVPLVADMSSNILSRPI-DVS 182 (355)
T ss_pred cEEEecccccCCCCCCCHhhcCCC---CCCCEEEEeCCcccccEEcc------eecccCCCeEEEEccccccCCCC-CHH
Confidence 999998655433 4 222223344 7788888777 467898742 34455999999999986666554 344
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++ |+++.++||+|+ | ||+|++++++++.++++.
T Consensus 183 ~~--~~~~ss~~K~lG-P-----~G~g~l~~~~~~~~~~~~ 215 (355)
T cd00611 183 KF--GVIYAGAQKNLG-P-----AGVTVVIVRKDLLGKARK 215 (355)
T ss_pred Hh--CEEEeecccccC-C-----CceEEEEECHHHHhhccc
Confidence 44 466666799775 5 689999999877766543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-13 Score=124.91 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=123.4
Q ss_pred cccccHHHHHHHHHHHHHHHhCCC--e-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-H-HHHHh
Q psy7357 27 DQARGYEQLIGELETDLCEITGYD--K-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-P-ASAQM 101 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~-~~~~~ 101 (302)
-.++-+.+++.++++.++++++.+ . +.+.++||+.+.++++..+.. ++++++++.. .||.. . ..++.
T Consensus 32 HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-------~~g~~vLv~g-~FG~r~~~eia~~ 103 (374)
T TIGR01365 32 HRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-------CRGVDVLAWE-SFGKGWVTDVTKQ 103 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-------CCCCeEEEEC-HHHHHHHHHHHHh
Confidence 346678899999999999999974 2 345678888887788777641 3677888865 67765 3 57788
Q ss_pred CCC-EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCC
Q psy7357 102 AGM-SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180 (302)
Q Consensus 102 ~g~-~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~ 180 (302)
+|+ ++..+..++...+|+++++. + .. .+++.|-+++|+.. |+++|.+.. ++++++||++..++...+ +
T Consensus 104 ~g~~~v~~l~~~~g~~~~~~~ve~--~---~~--v~~vhnETSTGv~n-pv~~i~~~~--~~~lliVDavSs~g~~~l-~ 172 (374)
T TIGR01365 104 LKLPDVRVLEAEYGKLPDLKKVDF--K---ND--VVFTWNGTTSGVRV-PNGDFIPAD--REGLTICDATSAAFAQDL-D 172 (374)
T ss_pred cCCCCcEEEcCCCCCCCCHHHcCC--C---CC--EEEecCCCchheec-ccccccccc--CCCcEEEEccchhcCCCC-C
Confidence 999 58888877777889999873 2 22 23444446899999 787766432 489999999754333332 2
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. ++|+++.+++|+|+.| ||+++++++++.++++
T Consensus 173 ~d--~iDv~~tgsQK~L~~p-----pGls~v~vs~~Al~~~ 206 (374)
T TIGR01365 173 YH--KLDVVTFSWQKVLGGE-----GAHGMLILSPRAVARL 206 (374)
T ss_pred hh--HCcEEEEechhccCCC-----CceEEEEECHHHHHHH
Confidence 22 4999999999999976 7999999998766543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=117.49 Aligned_cols=175 Identities=19% Similarity=0.183 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhC-------
Q psy7357 32 YEQLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMA------- 102 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~------- 102 (302)
..+...++++.+++++|.+. ..+..++|++|+++++.+++.+ .++++|++.++ .|+.........
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 150 (413)
T cd00610 77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY------TGRKKIISFEGAYHGRTLGALSLTGSKKYRG 150 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHH------cCCCeEEEECCCcCCccHHHHHhcCCccccc
Confidence 45678899999999999433 2445678888887777776654 45778888775 566555443322
Q ss_pred -----CCEEEEeecCCC------CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEE
Q psy7357 103 -----GMSVEPVSVRKD------GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVY 166 (302)
Q Consensus 103 -----g~~v~~i~~~~~------g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~lli 166 (302)
..+++.+|.++. ...|+++|++.++++++++++|++... +++|.+. + +++|.++|+++|+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li 229 (413)
T cd00610 151 GFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIV-PPPGYLKALRELCRKHGILLI 229 (413)
T ss_pred cCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEEE
Confidence 224667776521 234899999999855446666665543 3568765 3 9999999999999999
Q ss_pred EecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 167 LDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 167 vD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++. +++... ......+|++++ .|+|+ +|.++|++++++++++.+
T Consensus 230 ~Dev~~-g~g~~g~~~~~~~~~~~~d~~t~--sK~l~-----~g~~~g~~~~~~~~~~~~ 281 (413)
T cd00610 230 ADEVQT-GFGRTGKMFAFEHFGVEPDIVTL--GKGLG-----GGLPLGAVLGREEIMDAF 281 (413)
T ss_pred Eecccc-CCCcCcchhhHhhcCCCCCeEEE--ccccc-----CccccEEEEEcHHHHHhh
Confidence 999874 221110 001123577766 48776 246799999998887775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=117.27 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM-------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~-------- 104 (302)
+...+++++|+++++.+. .+..+||++|+++++..++.|...++...+++|+.. ...||.+....+..+.
T Consensus 77 ~~~~~la~~L~~~~~~~~-~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~ 155 (397)
T TIGR03246 77 EPVLRLAKKLVDATFADK-VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFA 155 (397)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCC
Confidence 456789999999988764 456789999988999988877433221234455554 4678877654443332
Q ss_pred ----EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecc---ccHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 105 ----SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFE---ENITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 105 ----~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~---~di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
.+..+|. .|++++++.++ +++++|+++.++ ..|++. ..+++|+++|+++|+++|+|+++ .+++
T Consensus 156 ~~~~~~~~~~~-----~d~~~l~~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~G 226 (397)
T TIGR03246 156 PLPGGIKHAPY-----NDLAAAKALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVG 226 (397)
T ss_pred CCCCceEEeCC-----CCHHHHHHHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCC
Confidence 2223332 38999999997 789999988654 556542 25999999999999999999997 3332
Q ss_pred ccC---CCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 177 GLC---RPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 177 ~~~---~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
... .... ..+|+++. .|.++ ||..+|++++++++++.+.
T Consensus 227 r~G~~~a~~~~gv~pDi~t~--~K~lg-----gG~pigav~~~~~i~~~~~ 270 (397)
T TIGR03246 227 RTGELYAYMHYGVTPDILTS--AKALG-----GGFPIGAMLTTTEIAAHLK 270 (397)
T ss_pred ccccchhhhhcCCCCCEEEe--ehhhh-----CCcceeEEEEcHHHHHhcc
Confidence 110 1111 23688866 47664 4688999999988877664
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=119.71 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 37 GELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 37 ~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
.++++.+++.++ .+..++..++|++. +...+++.+ |.|++++|.|..+...++..|.+++.+|.++
T Consensus 59 ~~Lr~aia~~~~~~~~~~~~i~it~Ga~~--~i~~~~~~~---------d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~ 127 (335)
T PRK14808 59 EELIEKILSYLDTDFLSKNNVSVGNGADE--IIYVMMLMF---------DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK 127 (335)
T ss_pred HHHHHHHHHHhCCCCCCcceEEEcCCHHH--HHHHHHHHh---------CcEEECCCCHHHHHHHHHHcCCeEEEecCCC
Confidence 455666666666 67778888888742 223333321 4689999998888888999999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCccCCc-EEE
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDYGSD-VSH 190 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~gaD-iv~ 190 (302)
++.+|... + .++++|+++|| ||||..- +.+++.+++ ++++++++|.++.--.. ...+....... |++
T Consensus 128 ~~~~~~~~----~----~~~~~i~i~nP~NPTG~~~-s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~ 197 (335)
T PRK14808 128 DLRIPEVN----V----GEGDVVFIPNPNNPTGHVF-EREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVI 197 (335)
T ss_pred cCCCChhH----c----cCCCEEEEeCCCCCCCCCc-CHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEE
Confidence 77665432 2 24578999999 5999987 688888888 57999999998631101 01011111123 444
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+..|+|+ +.|.|+|++++++++++.+.
T Consensus 198 ~S~SK~~~----l~GlRvG~~v~~~~~~~~l~ 225 (335)
T PRK14808 198 RTFSKAFS----LAAQRIGYVVSSEKFIDAYN 225 (335)
T ss_pred Eechhhcc----CcccceEEEEeCHHHHHHHH
Confidence 55556555 44999999999987776653
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=116.26 Aligned_cols=178 Identities=18% Similarity=0.189 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE----EEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV----EPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v----~~i 109 (302)
+...++++.+++++|.+. .+...+|+++++.++.+++.+....+ .++++|+++++.|..+...+...+... ...
T Consensus 69 ~~~~~l~~~la~~~g~~~-~~~~~sg~~a~~~a~~~~~~~~~~~~-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~ 146 (379)
T TIGR00707 69 EPQEELAEKLVEHSGADR-VFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFE 146 (379)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHHhhccC-CCCCeEEEECCCcCCccHHHHHhcCChhhhccCC
Confidence 457788999999999884 45567788887677776654421111 136888888876544433222222211 112
Q ss_pred ecCCCCC----CCHHHHHHHHhccCCCeEEEEEecCC-Cceecc---ccHHHHHHHHHHhCCEEEEecCCc-cccccc-C
Q psy7357 110 SVRKDGT----IDFSDLETKVKKNKETLSCLMITYPS-TFGVFE---ENITDVCELIHEHGGQVYLDGANM-NAQVGL-C 179 (302)
Q Consensus 110 ~~~~~g~----iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~---~di~~I~~ia~~~g~llivD~a~~-~~~~~~-~ 179 (302)
+...+.. .|++++++.++ +++++|+++.+| ++|... +++++|.++|+++|+++++|+++. .+..+. .
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~ 223 (379)
T TIGR00707 147 PLVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFF 223 (379)
T ss_pred CCCCCceeeCCCCHHHHHHHhh---hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh
Confidence 2222211 28999999998 678889886554 556532 158999999999999999999874 211110 0
Q ss_pred CCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 180 RPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 180 ~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
... ....|++++ +|+|+ +|.++|++++++++++.+..
T Consensus 224 ~~~~~~~~~d~~t~--sK~~~-----~G~riG~~~~~~~~~~~~~~ 262 (379)
T TIGR00707 224 AYEHYGIEPDIITL--AKGLG-----GGVPIGATLAKEEVAEAFTP 262 (379)
T ss_pred hHHhcCCCCCEEEE--ccccc-----CCcccEEEEEcHHHHhhhcC
Confidence 001 123577765 58776 37899999999888776643
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=114.99 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhCC-CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC--C-------
Q psy7357 36 IGELETDLCEITGY-DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG--M------- 104 (302)
Q Consensus 36 ~~e~~~~l~~l~g~-~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g--~------- 104 (302)
--++.+.++++++. +... +.+||++|.++++...|+| ..||+|+.-+. .||.+....-..| .
T Consensus 95 Ei~~Aell~~~~p~~e~vr-fvnSGTEAtmsAiRlARa~------TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~ 167 (432)
T COG0001 95 EVELAELLIERVPSIEKVR-FVNSGTEATMSAIRLARAY------TGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPS 167 (432)
T ss_pred HHHHHHHHHHhcCcccEEE-EecchhHHHHHHHHHHHHh------hCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCC
Confidence 34566788888886 5554 4689999988888888887 67787777665 6666544332211 1
Q ss_pred ----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccc---cHHHHHHHHHHhCCEEEEecC
Q psy7357 105 ----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEE---NITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 105 ----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~---di~~I~~ia~~~g~llivD~a 170 (302)
.++.+|+ -|++.+++++++.++++++|++.- ....|++.| -+++++++|+++|+++|+|++
T Consensus 168 s~Gvp~~~a~~ti~~~y-----ND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 168 SPGVPADVAKHTLVLPY-----NDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCCChhhhccEEEecC-----CCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 2333343 499999999998888999998875 245677643 488999999999999999997
Q ss_pred Cc---ccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 171 NM---NAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 171 ~~---~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. +++++...--...+|+.+. .|-++ ||-.+|.+..++++++++
T Consensus 243 iTGFR~~~gGaq~~~gi~PDlttl--GKiIG-----GGlP~ga~gGr~eiM~~~ 289 (432)
T COG0001 243 ITGFRVALGGAQGYYGVEPDLTTL--GKIIG-----GGLPIGAFGGRAEIMEQL 289 (432)
T ss_pred hhhcccCCcccccccCcCcchhhh--hhhhc-----CCcceeeeccHHHHHhhh
Confidence 53 2333322211223688887 58776 577899999999999866
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=110.00 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=122.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHH-HHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHH----HHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEY-AGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPAS----AQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~-a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~----~~~~g 103 (302)
+.+..+-+.+-.+++-|.|....++...+++..+. -++.+.. + ..++++||+++.. +++.... +...+
T Consensus 72 ~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aal-----r-~~~~r~vIv~E~~~fpTdly~a~g~~~~~~ 145 (407)
T COG3844 72 ADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAAL-----R-PQEGRRVIVSEGDNFPTDLYIAEGLADLLG 145 (407)
T ss_pred CchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHh-----c-cCCCceEEeecCCCCCcchhhhcchhhhhc
Confidence 45556667778899999998765555555554332 2222222 1 1457788888763 4443322 22333
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
. ..+-.+.+++++++++++ ++++.|++++-| .||.+- |+.+|.+++|++|++++.|=+|..+...+ ...
T Consensus 146 ~-----~~~~~~~~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~-dm~aiT~~AH~~galv~wDLAHsaGavp~-~Lh 215 (407)
T COG3844 146 I-----GYDLEGVIAPRALEEAIT---DDVAVVLLSHVNYKTGQLL-DMRAITALAHQHGALVGWDLAHSAGAVPV-DLH 215 (407)
T ss_pred c-----cccceeeeChHHHHHhhc---cceEEEEecccccccccee-eHHHHHHHHHhcCceEEeehhcccCCcce-eec
Confidence 2 233356788999999999 899999999888 589998 89999999999999999999886655543 456
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCc-ceeEEEeCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAPFL 221 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~~l 221 (302)
.+|+|+.++.++|.|. |||| .+++++.++..+..
T Consensus 216 ~~gaDfaigcsyKYLN-----gGPGapa~l~v~~~h~e~~ 250 (407)
T COG3844 216 AAGADFAIGCSYKYLN-----GGPGAPAGLFVAPRHRERS 250 (407)
T ss_pred ccCCCeeeeeeceecc-----CCCCCceeEEecccccccc
Confidence 7899999999999996 6884 78888876655543
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-11 Score=113.36 Aligned_cols=163 Identities=22% Similarity=0.245 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCC---------
Q psy7357 37 GELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGM--------- 104 (302)
Q Consensus 37 ~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~--------- 104 (302)
.++.++++++++.+ ...+...+|++|+++++.+++.. .+++|+..+ ..||.........|.
T Consensus 88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~-------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (398)
T PRK03244 88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP 160 (398)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHH-------CCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence 47888999998854 23455677888877777665532 234555554 456655444433332
Q ss_pred ---EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 105 ---SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 105 ---~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
++..+|. .|++++++.++ +++++|+++.+ |++|.+.++ +++|.++|+++|+++|+|+++. +++.
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr 231 (398)
T PRK03244 161 LPGGVEHVPY-----GDVDALAAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-GIGR 231 (398)
T ss_pred CCCCceEeCC-----CCHHHHHHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCcc
Confidence 2233332 38999999986 68999999876 688987633 8999999999999999999874 2221
Q ss_pred cC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 LC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.. .......|++++ +|+|+ +|.++|++++++++++.+.
T Consensus 232 ~g~~~~~~~~~~~pDi~t~--sK~l~-----~G~~ig~~~~~~~~~~~~~ 274 (398)
T PRK03244 232 TGAWFAHQHDGVTPDVVTL--AKGLG-----GGLPIGACLAFGPAADLLT 274 (398)
T ss_pred cchHHhhhhhCCCCCEEEE--chhhh-----CCcccEEEEEcHHHHhhcc
Confidence 00 111234688877 48886 3678999999987766654
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=117.17 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=123.7
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHH---H---hhcCCCCCEEEEcCCCCcccHHHHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYH---Q---AQDAHHRNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~---~---~~g~~~~d~Vlv~~~~hg~~~~~~~ 100 (302)
...-|..++..++++.|++++|.+.+.+ ..+|-.|+++++.++.... . ....++++.|+.....|.+-...++
T Consensus 140 rl~~G~~~~h~~LE~~LA~f~g~e~all-~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ 218 (476)
T PLN02955 140 ALICGYTTYHRLLESSLADLKKKEDCLV-CPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR 218 (476)
T ss_pred CccccChHHHHHHHHHHHHHHCCCcEEE-ECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH
Confidence 3456888899999999999999988644 5678888867666652110 0 0001345666766667766555554
Q ss_pred hC----CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 101 MA----GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 101 ~~----g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
.. +.++..++. .|+++|++++++++++.+.|++.. -+..|.+. |+++|.++|+++|+++++|.+|..+.
T Consensus 219 ls~~~~~a~~~~f~H-----ND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia-pL~eL~~L~~~~ga~LiVDEAH~~Gv 292 (476)
T PLN02955 219 LAERQGNVEVFVYRH-----CDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA-PMEELSQLRKKYGFLLVIDDAHGTFV 292 (476)
T ss_pred hccccCCceEEEeCC-----CCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCcEEEEcccccCce
Confidence 43 567777664 599999999976655555555443 25778888 79999999999999999999986443
Q ss_pred ccc---CCCCcc----CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 176 VGL---CRPGDY----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 176 ~~~---~~p~~~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+. .....+ ..||+++++.|.|+ -.+|++++++++++.+
T Consensus 293 ~G~~G~G~~e~~g~~~di~ii~~TLsKA~G-------~~GGfi~gs~~~~~~l 338 (476)
T PLN02955 293 CGENGGGVAEEFNCEADVDLCVGTLSKAAG-------CHGGFIACSKKWKQLI 338 (476)
T ss_pred ecCCCCcHHHHhCCCCCCcEEEEeCccchh-------ccCceeecHHHHHHHH
Confidence 221 001112 46899998888765 3458899987665544
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=111.99 Aligned_cols=196 Identities=18% Similarity=0.147 Sum_probs=122.8
Q ss_pred ccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeE--eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE
Q psy7357 9 MIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISF--QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86 (302)
Q Consensus 9 ~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~--~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl 86 (302)
+.-.+...|...|-|.-.+ .-++.+++-.++.||.+.+-+ +..||+.|.-.++.++. ++||+++
T Consensus 35 ~~~vs~~hf~~tTGYGY~D------~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~L--------rpGD~ll 100 (403)
T PF06838_consen 35 ENRVSDSHFAGTTGYGYDD------IGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVL--------RPGDELL 100 (403)
T ss_dssp HTT--GGGCS---TT-TT-------HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH----------TT-EEE
T ss_pred HcCCChhhcCCCCcCCCCC------ccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcC--------CCCCeEE
Confidence 4445666776667776522 346778888999999998644 56699988766666665 6899977
Q ss_pred EcC-CCCcccHH----------HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C----ceecccc
Q psy7357 87 IPV-SAHGTNPA----------SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T----FGVFEEN 150 (302)
Q Consensus 87 v~~-~~hg~~~~----------~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~----~G~~~~d 150 (302)
... ..|-+-.. +.+..|++...+|+.+||.+|.+.++++++ ++|++|+++-.. + .=.++ +
T Consensus 101 ~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~R~sl~i~-~ 176 (403)
T PF06838_consen 101 SITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK---PNTKMVLIQRSRGYSWRPSLTIE-E 176 (403)
T ss_dssp ESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH---TTEEEEEEE-S-TTSSS----HH-H
T ss_pred EcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc---cCceEEEEecCCCCCCCCCCCHH-H
Confidence 432 23333222 234678999999999999999999999999 899999999632 1 11335 6
Q ss_pred HHHHHHHHHHh--CCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 151 ITDVCELIHEH--GGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 151 i~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
|+++.+++|+. +++++||..+-. +....-|.+.|+|++.+|+=|-.+.-. -|..||++.+++++++..-|+.
T Consensus 177 I~~~i~~vk~~~p~~iifVDNCYGE-FvE~~EP~~vGADl~aGSLIKNpGGgi---AptGGYIaGr~~lVe~~a~RLT 250 (403)
T PF06838_consen 177 IKEIIKFVKEINPDVIIFVDNCYGE-FVETQEPTEVGADLMAGSLIKNPGGGI---APTGGYIAGRKDLVERAAYRLT 250 (403)
T ss_dssp HHHHHHHHHHH-TTSEEEEE-TTTT-TTSSS-GGGGT-SEEEEETTSGGGTTT----SS-EEEEESHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCeEEEEeCCcce-eccccCccccchhheeccceeCCCCCc---cCcCCEEechHHHHHHHHhhhc
Confidence 88888888875 679999965421 111245788999999999888665211 1789999999999988755553
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=114.73 Aligned_cols=179 Identities=20% Similarity=0.196 Sum_probs=129.4
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
..--|+.+...++++.+++++|.+.+- ..+||=.|+.+++.++. +++|.|+.....|-+-...++..+.++
T Consensus 77 R~i~G~~~~h~~LE~~lA~f~g~e~al-~f~SGy~AN~~~i~~l~--------~~~dli~~D~lnHASiidG~rls~a~~ 147 (388)
T COG0156 77 RLISGTSDLHVELEEELADFLGAEAAL-LFSSGFVANLGLLSALL--------KKGDLIFSDELNHASIIDGIRLSRAEV 147 (388)
T ss_pred CcccCCcHHHHHHHHHHHHHhCCCcEE-EEcccchhHHHHHHHhc--------CCCcEEEEechhhhhHHHHHHhCCCcE
Confidence 344688899999999999999998764 45678777877777665 578887777778877666777888888
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCC---CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc----
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKE---TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL---- 178 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~---~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~---- 178 (302)
+..+- .|+++||+.+.+.+. +-+.|++..- +-.|.+- |+++|.+++++||++++||.+|.++..+-
T Consensus 148 ~~f~H-----nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA-pL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG 221 (388)
T COG0156 148 RRFKH-----NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA-PLPELVELAEKYGALLYVDEAHAVGVLGPNGRG 221 (388)
T ss_pred EEecC-----CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC-CHHHHHHHHHHhCcEEEEEccccccccCCCCcc
Confidence 87774 699999999985321 1233444332 4578888 79999999999999999999997655431
Q ss_pred --CCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC----CCCccc
Q psy7357 179 --CRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL----PVHPLS 227 (302)
Q Consensus 179 --~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l----pg~~~~ 227 (302)
...+- ...||++++..|.|+ -.+|+++++..+.+.+ ++.++.
T Consensus 222 ~~e~~g~~~~~vdi~~gTlsKAlG-------s~Gg~v~g~~~~~d~L~~~ar~~ifS 271 (388)
T COG0156 222 LAEHFGLEPEEVDIIVGTLGKALG-------SSGGYIAGSAALIDYLRNRARPFIFS 271 (388)
T ss_pred HHHHhCCCCccceEEEEEchhhhc-------ccCceeeCcHHHHHHHHHhCCceecc
Confidence 01111 124899998888886 2348888887655543 555653
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=111.11 Aligned_cols=176 Identities=15% Similarity=0.246 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhh-cC-CCCCEEEEcCCC-CcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQ-DA-HHRNVCLIPVSA-HGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~-g~-~~~d~Vlv~~~~-hg~~~~~~~~~g------- 103 (302)
+...++++++++++|.+. .+..+||++|+++++..++.+.... +. +.+++|+..+.. ||.........+
T Consensus 79 ~~~~~l~~~l~~~~~~~~-~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~ 157 (401)
T TIGR01885 79 DVFGEFAEYVTKLFGYDK-VLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTN 157 (401)
T ss_pred HHHHHHHHHHHhhcCCCE-EEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccc
Confidence 566789999999998764 4567899999889988877653211 11 224566655544 665544433322
Q ss_pred -----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 -----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 -----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
..+..+|. .|+++|+++++++.+++++|++..+ +++|.+.+ .+++|.++|+++|+++++|+++ .+
T Consensus 158 ~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~-~g 231 (401)
T TIGR01885 158 FGPYVPGFKKIPY-----NNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQ-TG 231 (401)
T ss_pred cCCCCCCceEeCC-----CCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hC
Confidence 12333332 3799999999765567888888764 57788752 2999999999999999999997 34
Q ss_pred cc--cc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QV--GL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~--~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++ +. .....+.+|+++++ |.|+ .||.++|++++++++++.+.
T Consensus 232 ~g~~G~~~~~~~~~~~~di~~~g--K~l~----~g~~~ig~v~~~~~i~~~~~ 278 (401)
T TIGR01885 232 LGRTGKLLCVDHENVKPDIVLLG--KALS----GGVYPVSAVLADDDVMLTIK 278 (401)
T ss_pred CCccchhhHHhhcCCCCCEEEee--cccc----CCCCCcEEEEEcHHHHhhcc
Confidence 32 11 00112457888864 8775 35678999999987766553
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=111.08 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcC-CCCCEEEEcC-CCCcccHHHHHhCCCEEE---
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDA-HHRNVCLIPV-SAHGTNPASAQMAGMSVE--- 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~-~~~d~Vlv~~-~~hg~~~~~~~~~g~~v~--- 107 (302)
+...++++.++++++++.+ +..+||+.|+++++..++.+... +|. ..+++|++.+ ..||.........+-...
T Consensus 73 ~~~~~~~~~l~~~~~~~~~-~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~ 151 (400)
T PTZ00125 73 DVLGLAEKYITDLFGYDKV-LPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNN 151 (400)
T ss_pred HHHHHHHHHHHhCCCCCEE-EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhcc
Confidence 4678889999999988754 56789999988888877654221 111 1245555555 467766554432221110
Q ss_pred EeecCCC----CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccccc--c
Q psy7357 108 PVSVRKD----GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQV--G 177 (302)
Q Consensus 108 ~i~~~~~----g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~--~ 177 (302)
..+..++ ...|++++++.++ .+++++|+++.+ |++|.+.++ +++|.++|+++|+++|+|+++. +++ +
T Consensus 152 ~~~~~~~~~~~~~~d~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~g~~G 228 (400)
T PTZ00125 152 FGPFVPGFELVDYNDVEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GLGRTG 228 (400)
T ss_pred CCCCCCCceEeCCCCHHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccc
Confidence 0111000 1238999999996 257899988765 688987622 9999999999999999999873 232 1
Q ss_pred c-CCC--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 L-CRP--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~-~~p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. ... ....+|+++++ |+|+ .|++++|++++++++.+.+.
T Consensus 229 ~~~~~~~~~~~pd~~~~s--K~l~----~g~~~ig~v~~~~~~~~~~~ 270 (400)
T PTZ00125 229 KLLAHDHEGVKPDIVLLG--KALS----GGLYPISAVLANDDVMLVIK 270 (400)
T ss_pred hhhHHHhcCCCCCEEEEc--cccc----CCCcCcEEEEEcHHHHhhcc
Confidence 0 011 11236888874 8886 24568999999988777654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-10 Score=107.82 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCC-------
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGM------- 104 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~------- 104 (302)
.+...++.+++++.++.+. .+...+|++|+++++..++.+ ..+++|++.+ ..||.........+.
T Consensus 70 ~~~~~~la~~l~~~~~~~~-~~~~~sG~~a~~~A~~~a~~~------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~ 142 (377)
T PRK02936 70 NSLQEEVASLLAENSAGDL-VFFCNSGAEANEAALKLARKH------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGF 142 (377)
T ss_pred CHHHHHHHHHHHhcCCCCE-EEEeCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCCcHHhhhccCCccccccC
Confidence 3566777788887776654 456788999887887765543 3445666665 467766554432221
Q ss_pred -----EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 105 -----SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 105 -----~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
++..+|. -|++++++.++ +++++|+++.+ +..|...+ .+++|.++|+++|+++|+|.++. ++
T Consensus 143 ~~~~~~~~~~~~-----~d~~~l~~~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~ 213 (377)
T PRK02936 143 GPLLPGFTHVPF-----NDIKALKEVMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-GI 213 (377)
T ss_pred CCCCCCceEeCC-----CCHHHHHHhcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CC
Confidence 1122222 28999999997 78899988775 35555531 49999999999999999999873 33
Q ss_pred cccCCC---Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+....+ ..+ ..|++++ +|+|+ +|.++|++++++++.+.+.
T Consensus 214 g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~ig~v~~~~~~~~~~~ 258 (377)
T PRK02936 214 GRTGTLFAYEQFGLDPDIVTV--AKGLG-----NGIPVGAMIGKKELGTAFG 258 (377)
T ss_pred CcCchhhHHHhhCCCCcEEEE--ccccc-----CCCccEEEEEcHHHHhhcc
Confidence 211001 112 3577765 58776 3678999999988877664
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-11 Score=113.06 Aligned_cols=175 Identities=17% Similarity=0.160 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHh--CCCEEEEeec
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQM--AGMSVEPVSV 111 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~--~g~~v~~i~~ 111 (302)
...++.++|++++.-....+..++|++|++++++.++.+ ..+++|+..++ .||........ .+......|.
T Consensus 89 ~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~------~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~ 162 (423)
T TIGR00713 89 AEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGY------TGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPT 162 (423)
T ss_pred HHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEEcCCCCCChhhhhccccCcccccCCCC
Confidence 345677777777654334566788999988888887766 34577777766 55543322211 1111111111
Q ss_pred CC--------C----CCCCHHHHHHHHhccCCCeEEEEEe-cCCCceecccc---HHHHHHHHHHhCCEEEEecCCc-cc
Q psy7357 112 RK--------D----GTIDFSDLETKVKKNKETLSCLMIT-YPSTFGVFEEN---ITDVCELIHEHGGQVYLDGANM-NA 174 (302)
Q Consensus 112 ~~--------~----g~iD~~~l~~~i~~~~~~t~~V~i~-~Pn~~G~~~~d---i~~I~~ia~~~g~llivD~a~~-~~ 174 (302)
.+ + -..|++++++.++++.+++++|++. .|+.+|.+.++ +++|.++|+++|+++|+|+++. +.
T Consensus 163 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r 242 (423)
T TIGR00713 163 SPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFR 242 (423)
T ss_pred CCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccc
Confidence 00 0 0128999999998655678888886 56667877532 8999999999999999999873 11
Q ss_pred ccccCCC--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVGLCRP--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~~~~p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+..... .....|++++ .|+++ +|.++|++++++++++.+.
T Consensus 243 ~g~~~~~~~~~~~pDi~t~--sK~l~-----~G~pig~v~~~~~i~~~~~ 285 (423)
T TIGR00713 243 VALGGAQEYFGVEPDLTTL--GKIIG-----GGLPVGAFGGRREIMERLA 285 (423)
T ss_pred cCcchhHHHhCCCcchhhh--hhhhc-----CCCceeeeeEHHHHHHhhC
Confidence 1100000 1123576654 46665 4688999999988877664
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=109.93 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCC---------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAG--------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g--------- 103 (302)
+...++.++++++++.+. .+..+||++|+++++..++.+...++...+++|+ +....||.+....+..+
T Consensus 82 ~~~~~l~~~l~~~~~~~~-~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~ 160 (403)
T PRK05093 82 EPALRLAKKLIDATFAER-VFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFG 160 (403)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCC
Confidence 344588899999887664 4567899999888888877764222111234444 44567887654332211
Q ss_pred ---CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCc-eecc---ccHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 104 ---MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTF-GVFE---ENITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 104 ---~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~-G~~~---~di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
.+++.+|. -|++++++.++ +++++|+++..+++ |.+. ..+++|.++|++||+++|+|.++. +++
T Consensus 161 ~~~~~~~~~~~-----~d~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g 231 (403)
T PRK05093 161 PKPADITHVPF-----NDLAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMG 231 (403)
T ss_pred CCCCCcEEeCC-----CCHHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCC
Confidence 12333332 28999999997 68899988854544 4442 149999999999999999999874 232
Q ss_pred ccC---CCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 177 GLC---RPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 177 ~~~---~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
-.. .... ...|+.++ .|+++ +|.++|++++++++++.+..
T Consensus 232 ~~g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~vv~~~~i~~~l~~ 276 (403)
T PRK05093 232 RTGDLFAYMHYGVTPDILTS--AKALG-----GGFPIGAMLTTAEIASHFKV 276 (403)
T ss_pred CCccchhhhhcCCCCCEEEe--ccccc-----CCcceEEEEEcHHHHhhcCC
Confidence 111 1111 23577665 48776 37899999999888777654
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-11 Score=111.94 Aligned_cols=166 Identities=24% Similarity=0.321 Sum_probs=111.5
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-----CCcccHHHHHhCCCEEEEeecC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-----AHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-----~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
++.+.++.++|.+.+.+ .+..+.|.+.++.++ .++++|+++.. .|...+..++..|++++++..
T Consensus 72 ~~~~~~~~~~~aea~~i-vnnn~aAVll~~~al---------~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~- 140 (395)
T COG1921 72 ELAELLCGLTGAEAAAI-VNNNAAAVLLTLNAL---------AEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGT- 140 (395)
T ss_pred HHHHHHhcccchhheee-ECCcHHHHHHHHhhh---------ccCCeEEEEccccccCCCCChhHHHHHcCCEEEEecc-
Confidence 33444555555544433 444554443433332 23556666642 333446788999999998874
Q ss_pred CCCCCCHHHHHHHHhccCCCeEEEE-EecCCC--ceeccccHHHHHHHHHHhCCEEEEecCCccc---ccccCCCCccCC
Q psy7357 113 KDGTIDFSDLETKVKKNKETLSCLM-ITYPST--FGVFEENITDVCELIHEHGGQVYLDGANMNA---QVGLCRPGDYGS 186 (302)
Q Consensus 113 ~~g~iD~~~l~~~i~~~~~~t~~V~-i~~Pn~--~G~~~~di~~I~~ia~~~g~llivD~a~~~~---~~~~~~p~~~ga 186 (302)
.+.....+++.+|. ++|++++ +.++|+ ++.+ +.+++.++||++|+++++|.+.-.- ...+...-..|+
T Consensus 141 -tn~t~~~d~~~AIn---e~ta~llkV~s~~~~f~~~l--~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~Ga 214 (395)
T COG1921 141 -TNRTHLKDYELAIN---ENTALLLKVHSSNYGFTGML--SEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGA 214 (395)
T ss_pred -cCcCCHHHHHHHhc---cCCeeEEEEeeccccccccc--cHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCC
Confidence 35678999999999 7888777 444553 3334 4788999999999999999764111 111111235689
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
|+|++|++|-|+ ||+.|+|+.++++++++...-.
T Consensus 215 DLV~~SgdKllg------GPqaGii~GkKelI~~lq~~~l 248 (395)
T COG1921 215 DLVSFSGDKLLG------GPQAGIIVGKKELIEKLQSHPL 248 (395)
T ss_pred CEEEEecchhcC------CCccceEechHHHHHHHHhhhh
Confidence 999999999775 8999999999999988765444
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-10 Score=108.79 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcCCC-CCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDAHH-RNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~~~-~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++++++++.+.+ +..++|++|+++++...+.|... +|..+ +.+|+.. ...||.........+-
T Consensus 117 ~~~~~la~~L~~~~~~~~~-~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 195 (474)
T PLN02624 117 DKFPEFAEYLTSMFGYDMV-LPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRG 195 (474)
T ss_pred HHHHHHHHHHHhhcCCCeE-EEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcccccc
Confidence 4556788899999987754 55789999988888877765321 22111 2244443 3467765554332221
Q ss_pred ------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc-cc--HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 105 ------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE-EN--ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 105 ------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~-~d--i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.+..+|. -|++.+++.++++.+++++|+++.+ +++|.+. ++ +++|.++|++||+++|+|+++. +
T Consensus 196 ~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G 269 (474)
T PLN02624 196 FGPLLPGHLKVDF-----GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-G 269 (474)
T ss_pred CCCCCCCceEeCC-----CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C
Confidence 1223332 2789999999765578999999886 5788764 22 9999999999999999999984 3
Q ss_pred ccc----cC-CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 QVG----LC-RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~~~----~~-~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++. +. .-....+|++++ .|.|+ .|+.++|++++++++++.+
T Consensus 270 ~GrtG~~~a~~~~~i~pDiv~l--sK~lg----gG~~pigav~~~~~i~~~~ 315 (474)
T PLN02624 270 LARTGKMLACDWEEVRPDVVIL--GKALG----GGVIPVSAVLADKDVMLCI 315 (474)
T ss_pred cCcCcchhhHHhcCCCCCEEEe--ccccc----CCCCcceeeeecHHHHhHh
Confidence 321 10 001234688887 47665 4557899999987766544
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-10 Score=106.87 Aligned_cols=172 Identities=19% Similarity=0.241 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCCE-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGMS------- 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~~------- 105 (302)
+...++.++++++++.+. .+..+||++|+++++..++.+...++..++++|+..+ ..||.........+..
T Consensus 81 ~~~~~la~~l~~~~~~~~-v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 159 (406)
T PRK12381 81 EPVLRLAKKLIDATFADR-VFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFA 159 (406)
T ss_pred HHHHHHHHHHHhhCCCCe-EEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCC
Confidence 345688899999888764 4567899999889999888764333222455666554 5777765444333311
Q ss_pred -----EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCc-eec---cccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 106 -----VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STF-GVF---EENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 106 -----v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~-G~~---~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
++.+| ..|++++++.++ +++++|++. | +.. |++ ...+++|.++|++||+++|+|.++ .++
T Consensus 160 ~~~~~~~~~~-----~~d~~~l~~~l~---~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~ 229 (406)
T PRK12381 160 PLPPDIRHAA-----YNDLNSASALID---DQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGV 229 (406)
T ss_pred CCCCCeeEeC-----CCCHHHHHHhcc---CCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCC
Confidence 22222 248999999997 688888885 5 443 443 226899999999999999999987 233
Q ss_pred cccCCC---Cc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 176 VGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 176 ~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+-.... .. ..+|+++. .|+++ ||.++|++++++++++.+..
T Consensus 230 gr~G~~~~~~~~~v~pDi~t~--sK~l~-----gG~~ig~~~~~~~~~~~~~~ 275 (406)
T PRK12381 230 GRTGELYAYMHYGVTPDVLTT--AKALG-----GGFPIGAMLTTEKCASVMTV 275 (406)
T ss_pred CCCcchhhhHhhCCCCCEEEe--hhhhh-----CCCceEEEEEcHHHHhhcCC
Confidence 211001 11 23577665 47775 46889999999888776643
|
|
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-11 Score=108.67 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=117.0
Q ss_pred hCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHH
Q psy7357 47 TGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETK 125 (302)
Q Consensus 47 ~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~ 125 (302)
-++..+++-.+-|+.-. .-..+|..+ .+| ++|+..+|.|+.|...++..+++|+.+|.+++..+|.|++.+.
T Consensus 82 kpLt~dnic~GvGsDE~--ID~iiR~~c-----~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~ev 154 (375)
T KOG0633|consen 82 KPLTSDNICVGVGSDEL--IDLIIRCVC-----DPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEV 154 (375)
T ss_pred CCCCccceEEecCcHHH--HHHHHhhee-----cCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHH
Confidence 35556688888888522 122233322 344 8899999999988888888999999999999999999999999
Q ss_pred HhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH-hCCEEEEecCCc--ccccccCCCCccCCcEEEeCCCcccCCCC
Q psy7357 126 VKKNKETLSCLMITYP-STFGVFEENITDVCELIHE-HGGQVYLDGANM--NAQVGLCRPGDYGSDVSHLNLHKTFCIPH 201 (302)
Q Consensus 126 i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~-~g~llivD~a~~--~~~~~~~~p~~~gaDiv~~~~hK~l~~p~ 201 (302)
++.. ..++++++++| |++|.+. -...|.++..- -|.++++|+|+. .+............++++. |||++..
T Consensus 155 l~~d-s~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivl---qTlSKsf 229 (375)
T KOG0633|consen 155 LELD-SKIKCIFLTSPGNPTGSII-KEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVL---QTLSKSF 229 (375)
T ss_pred Hhcc-ccceEEEEcCCCCCCcccc-cHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeeh---hhhhhhc
Confidence 9742 47899999999 6999764 24444444433 378888999873 2211111111223577775 6888888
Q ss_pred CCCCCcceeEEEeCCCCCCCCC
Q psy7357 202 GGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 202 ~~gGp~~G~l~~~~~l~~~lpg 223 (302)
|..|-|+|+-+++.++++.|..
T Consensus 230 GLAGiRvG~~~~~~~ia~iln~ 251 (375)
T KOG0633|consen 230 GLAGIRVGYGAFPLSIAEILNR 251 (375)
T ss_pred CcceeEeecccccHHHHHHHHh
Confidence 8999999999999877766533
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=110.60 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH--HHhCCCEEEEe
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS--AQMAGMSVEPV 109 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~--~~~~g~~v~~i 109 (302)
..+...++++.+++++|. ..+..++|+.|+++++..++.... .+ ++++.|+.....|++.... ....+.+++.+
T Consensus 89 ~~~~~~~l~~~la~~~~~--~~~~~~sG~~a~~~ai~~~~~~~~-~~-~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~ 164 (402)
T PRK07505 89 RSQILKDLEEALSELFGA--SVLTFTSCSAAHLGILPLLASGHL-TG-GVPPHMVFDKNAHASLNILKGICADETEVETI 164 (402)
T ss_pred hhHHHHHHHHHHHHHhCC--CEEEECChHHHHHHHHHHHHhccc-CC-CCCCEEEEchhhhHhHHhhhhhhhcCCeEEEe
Confidence 457889999999999997 345566888777666654332110 00 1233444555677764321 12235678888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
|. .|+++++++++ ++++++++++| |++|.+. ++++|.++|+++|+++|+|+++.
T Consensus 165 ~~-----~d~~~l~~~~~---~~~~~~vl~~p~~~~G~~~-~~~~i~~l~~~~~~~li~DEa~~ 219 (402)
T PRK07505 165 DH-----NDLDALEDICK---TNKTVAYVADGVYSMGGIA-PVKELLRLQEKYGLFLYIDDAHG 219 (402)
T ss_pred CC-----CCHHHHHHHHh---cCCCEEEEEecccccCCcC-CHHHHHHHHHHcCCEEEEECccc
Confidence 76 48999999987 56678888888 4889888 69999999999999999999974
|
|
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-11 Score=105.59 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
.-..++++..++++|-+.. ++..||+.+++.++++-. ..++..|++.+..|-.... +....|..++.+.
T Consensus 56 ~tt~rLE~~vA~l~GKEAg-LFv~SGTmgNllaIm~Hc-------~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~ 127 (384)
T KOG1368|consen 56 PTTNRLEQRVAELFGKEAG-LFVPSGTMGNLLAIMVHC-------HQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVK 127 (384)
T ss_pred ccHHHHHHHHHHHhCccce-eeecccccccHHHHHHHh-------cCCCceEEeccchheeehhccChhhhccceeEeee
Confidence 3457888999999998775 445679887755544422 2578899999988754433 5668889999998
Q ss_pred cCCCCCCCHHHHHHHHhc-----cCCCeEEEEEecC-CCce-ec---cccHHHHHHHHHHhCCEEEEecCCccc-cccc-
Q psy7357 111 VRKDGTIDFSDLETKVKK-----NKETLSCLMITYP-STFG-VF---EENITDVCELIHEHGGQVYLDGANMNA-QVGL- 178 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~-----~~~~t~~V~i~~P-n~~G-~~---~~di~~I~~ia~~~g~llivD~a~~~~-~~~~- 178 (302)
..+||.+|+++||+++.. |.|.|++|.+.|. |.+| .. + .+.+|.++|+++|..+++|+|-.+- ....
T Consensus 128 ~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle-~~~~v~~lak~~glkLH~DGARi~NAavasg 206 (384)
T KOG1368|consen 128 NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLE-ELDRVKALAKRHGLKLHMDGARIFNAAVASG 206 (384)
T ss_pred eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHH-HHHHHHHHHhccCCeeecchhhhhhHHHHcC
Confidence 888999999999999973 3467899999996 4556 44 4 4778899999999999999986321 1111
Q ss_pred CCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 179 CRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 179 ~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
.+... ..+|-+..-++|.++. |=+.++..+++++++
T Consensus 207 V~vk~i~~~fDSVsiCLSKglgA------PVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 207 VPVKKICSAFDSVSICLSKGLGA------PVGSVIVGSKDFIDK 244 (384)
T ss_pred CCHHHHHHhhhhhhhhhhccCCC------CcccEEEccHHHHHH
Confidence 11111 1357776655676654 545667767666544
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=106.96 Aligned_cols=185 Identities=16% Similarity=0.212 Sum_probs=129.0
Q ss_pred CCccCCCCCCCcccccHHHHHHHHHHHHHHHhCC----CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q psy7357 16 QLTNMHPFIPQDQARGYEQLIGELETDLCEITGY----DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVS 90 (302)
Q Consensus 16 ~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~----~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~ 90 (302)
.|...--||+ +.|..+...++.+-+.+.-|- |..++...+|+ .++++....+. ++||.-|||.|
T Consensus 110 ~f~~la~fqd---y~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa--------dpgdafLvPtP 178 (471)
T KOG0256|consen 110 SFDELAMFQD---YHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA--------DPGDAFLVPTP 178 (471)
T ss_pred chhhHhhccc---ccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc--------CCCceeeecCC
Confidence 3455566666 678888888877777776663 34456556665 44534333332 79999999999
Q ss_pred CCcccHHH-HHhCCCEEEEeecCC-C-CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHh
Q psy7357 91 AHGTNPAS-AQMAGMSVEPVSVRK-D-GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEH 161 (302)
Q Consensus 91 ~hg~~~~~-~~~~g~~v~~i~~~~-~-g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~ 161 (302)
.||....- .-+.|++++.|.+.. + .+++++++|+++.+. .-++++|+++|| ||.|..- +.+..+...|.++
T Consensus 179 yY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k 258 (471)
T KOG0256|consen 179 YYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK 258 (471)
T ss_pred CCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc
Confidence 88766443 347799999999865 3 489999999999642 357899999999 6999862 2578888889999
Q ss_pred CCEEEEecCCcccccc---c-------CCCCccCCc--EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 162 GGQVYLDGANMNAQVG---L-------CRPGDYGSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 162 g~llivD~a~~~~~~~---~-------~~p~~~gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
|+-+|+|+.+..+... + ..+ ++..| -++-++.|-|+.| |-++|.|+...+
T Consensus 259 niHvI~DEIya~sVF~~~~F~Sv~ev~~~~-~~~~~rvHivyslSKD~Glp----GfRvGviYS~ne 320 (471)
T KOG0256|consen 259 NIHVISDEIYAGSVFDKSEFRSVLEVRKDP-HLDPDRVHIVYSLSKDFGLP----GFRVGVIYSNNE 320 (471)
T ss_pred ceEEEeehhhcccccCccCceEHHHHhhcc-ccCCCcEEEEEEeccccCCC----ceEEEEEEecCh
Confidence 9999999976433221 1 111 11122 2445568999888 889999998753
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-12 Score=117.37 Aligned_cols=167 Identities=25% Similarity=0.308 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC---c-c--cHHHHHhCCCEEEEee
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH---G-T--NPASAQMAGMSVEPVS 110 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h---g-~--~~~~~~~~g~~v~~i~ 110 (302)
..+++.+|+++|++.+.+ .++.+.|. ++++..+ .++.+|+++...- | + .+...+..|.++++|.
T Consensus 50 ~~v~~ll~~ltgAeaA~V-vNnnaAAv---~L~l~~l------a~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVG 119 (367)
T PF03841_consen 50 AHVEELLCELTGAEAALV-VNNNAAAV---LLALNTL------AKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVG 119 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-cccccccc---ccccccc------ccccccccccccccccccccccccccccccccccccc
Confidence 456778999999987644 34444433 3333222 2466788887532 2 2 2446677899999888
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C--ceec-cccHHHHHHHHHHhCCEEEEecCCc----cccccc----
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T--FGVF-EENITDVCELIHEHGGQVYLDGANM----NAQVGL---- 178 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~--~G~~-~~di~~I~~ia~~~g~llivD~a~~----~~~~~~---- 178 (302)
.. ....+++++++|+ ++|++++-.+++ + .|+- +++++++.+++|+||+++++|...- .+..++
T Consensus 120 tt--N~t~~~Dye~AI~---e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep 194 (367)
T PF03841_consen 120 TT--NRTHLSDYEKAIT---ENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEP 194 (367)
T ss_dssp ----------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------
T ss_pred cc--ccccccccccccc---ccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcccc
Confidence 63 3567889999999 899999877764 3 2433 3479999999999999999997641 111111
Q ss_pred --CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 179 --CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 179 --~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
...-..|+|+|++|+.|-|+ ||+.|+++.++++++++...
T Consensus 195 ~v~~~~~~GaDlV~fSGdKlLG------GPQaGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 195 TVQEYLAAGADLVTFSGDKLLG------GPQAGIIVGKKELIEKLKKH 236 (367)
T ss_dssp ----CCCCT-SEEEEETTSSSS------S-S-EEEEEEHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCcCC------CCCeEEEEeCHHHHHHHhhC
Confidence 11235689999999999775 89999999999999887643
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-10 Score=106.36 Aligned_cols=178 Identities=23% Similarity=0.304 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCCEEEE---
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGMSVEP--- 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~~v~~--- 108 (302)
.+...+++++++++.|.+.+ +..++|++|+++++.+++.+....+ ..+++|++.++ .||.........+.....
T Consensus 80 ~~~~~~la~~l~~~~~~~~v-~~~~gg~eA~~~al~~a~~~~~~~~-~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 157 (396)
T PRK02627 80 IEPQEELAEKLVELSGMDKV-FFCNSGAEANEAAIKLARKYGHKKG-IEKPEIITAENSFHGRTLATLSATGQPKYQEGF 157 (396)
T ss_pred CHHHHHHHHHHHhhcCCCEE-EECCCcHHHHHHHHHHHHHHhcccC-CCCCeEEEECCCcCcccHHHHHhcCCccccccC
Confidence 45677888999998888654 4567788887777777665421111 11266777665 455544433333322211
Q ss_pred eecCCCC----CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEecCCc-ccccc-c
Q psy7357 109 VSVRKDG----TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLDGANM-NAQVG-L 178 (302)
Q Consensus 109 i~~~~~g----~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD~a~~-~~~~~-~ 178 (302)
.+...+. ..|++++++++. +++++|+++.+ |++|... ..+++|.++|+++|+++|+|.++. ....+ .
T Consensus 158 ~~~~~~~~~~~~~d~~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~ 234 (396)
T PRK02627 158 EPLVEGFIYVPFNDIEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL 234 (396)
T ss_pred CCCCCCceEeCCCCHHHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce
Confidence 1211111 128999999996 78999999876 4667421 158999999999999999999874 11111 0
Q ss_pred CCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
...... ..|++++ .|+++ +|.++|++++++++++.+.
T Consensus 235 ~~~~~~~~~pdi~t~--sK~~~-----~G~rig~~~~~~~~~~~~~ 273 (396)
T PRK02627 235 FAYQHYGIEPDIMTL--AKGLG-----GGVPIGAVLAKEKVADVFT 273 (396)
T ss_pred eeehhcCCCCCEEEE--cchhh-----CCcccEEEEEcHHHHhccC
Confidence 011112 3577765 47765 3689999999988776664
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=103.92 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCCEE---EEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGMSV---EPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~~v---~~i 109 (302)
+...++.+++++..+.+. .++.+||++|+++++..++.+....+ ..+++|+..+ ..||.........+... ...
T Consensus 78 ~~~~~la~~l~~~~~~~~-v~f~~SGseA~e~Aik~ar~~~~~~~-~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~ 155 (395)
T PRK03715 78 EPMAKLAGLLTQHSCFDK-VFFANSGAEANEGAIKLARKWGRKHK-NGAYEIITFDHSFHGRTLATMSASGKPGWDTIFA 155 (395)
T ss_pred HHHHHHHHHHhhccCCCE-EEEeCCcHHHHHHHHHHHHHHhhccC-CCCcEEEEECCCcCCChHHHHhhcCCcccccCCC
Confidence 345566677776665554 45678999998899888886632111 2334555444 67887766554444221 111
Q ss_pred ecCCC----CCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecccc---HHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 110 SVRKD----GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 110 ~~~~~----g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|...+ ...|++++++.++ +++++|+++... ..|.+.++ +++|.++|+++|+++|+|+++. +++.....
T Consensus 156 ~~~~~~~~~~~~d~~~l~~~l~---~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~ 231 (395)
T PRK03715 156 PQVPGFPKAELNDIASVEKLIT---DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTL 231 (395)
T ss_pred CCCCCceeeCCchHHHHHHHcC---CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcch
Confidence 11111 1258999999997 678888887543 55766522 9999999999999999999875 33211110
Q ss_pred ---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 182 ---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 182 ---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
. ...+|+++. .|.|+. |-.+|.+++++++....++.+
T Consensus 232 ~a~~~~gv~PDi~t~--gK~lg~-----G~p~~av~~~~~i~~~~~~~~ 273 (395)
T PRK03715 232 FAYELSGIEPDIMTL--GKGIGG-----GVPLAALLAKAEVAVFEAGDQ 273 (395)
T ss_pred hhHhhcCCCCceeee--hhhhhC-----CcceEEEEEccccccccCCCc
Confidence 1 124698887 488862 334777788888765555543
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=103.09 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHh-------CCCE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQM-------AGMS 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~-------~g~~ 105 (302)
+...++.++++++++.+.+ +..+||++|+++++..++.+ +.+++|+..+ ..||........ .++.
T Consensus 66 ~~~~~la~~l~~~~~~~~v-~~~~SGseA~e~Alklar~~------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~ 138 (364)
T PRK04013 66 EEKEEMLEELSKWVNYEYV-YMGNSGTEAVEAALKFARLY------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFE 138 (364)
T ss_pred HHHHHHHHHHHhhcCCCEE-EEeCchHHHHHHHHHHHHHH------hCCCEEEEECCccccCchhhccCCCCcccccCCC
Confidence 4567788889999887754 55789999988888888765 3446666555 567766443331 1121
Q ss_pred -----EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 106 -----VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 106 -----v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
+..+|. -|++++++.+. +++++|++..- ...|.+.+| ++++.++|+++|+++|.|+++. +
T Consensus 139 p~~~~~~~~~~-----~d~~~l~~~i~---~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G-- 207 (364)
T PRK04013 139 PLVPGFKHIPF-----NDVEAAKEAIT---KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-G-- 207 (364)
T ss_pred CCCCCcEEecC-----CCHHHHHHHhc---CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c--
Confidence 223332 27889999997 78999988763 345666546 9999999999999999999874 1
Q ss_pred ccCCCC--------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 177 GLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 177 ~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+ +.| ...+|+++. .|.++. |-.+|.++.++++
T Consensus 208 -~-RtG~~~a~~~~gv~PDiv~~--gK~lgg-----G~P~~a~~~~~~~ 247 (364)
T PRK04013 208 -L-RTGKFLAIEHYKVEPDIVTM--GKGIGN-----GVPVSLTLTNFDV 247 (364)
T ss_pred -C-CCCchhHHHhcCCCCCEEEe--cccccC-----CceeEEEEecccc
Confidence 1 222 234799998 487762 4346667777665
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=104.93 Aligned_cols=175 Identities=19% Similarity=0.185 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHh-CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC--------C
Q psy7357 34 QLIGELETDLCEIT-GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG--------M 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~-g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g--------~ 104 (302)
+...++.++|++++ +.....++.+||++|+++++...+.+. ++.+.|.+....||.+.......+ +
T Consensus 86 ~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~t-----gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~ 160 (433)
T PRK08117 86 ESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVT-----KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYY 160 (433)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhc-----CCCeEEEECCCcCCcCHHHHhhcCCCccccccC
Confidence 45678888999988 322234567899999888888777651 233444455567887755432111 1
Q ss_pred -----EEEEeecCCCCC------------CCHHHHHHHHhc--cCCCeEEEEEecC-CCceecccc----HHHHHHHHHH
Q psy7357 105 -----SVEPVSVRKDGT------------IDFSDLETKVKK--NKETLSCLMITYP-STFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 -----~v~~i~~~~~g~------------iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..+|...... -|++++++.+++ .++++++|++..- +..|.+. + ++++.++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~-~~~~~l~~l~~lc~~ 239 (433)
T PRK08117 161 QPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIV-PPKSFLKKLREICDR 239 (433)
T ss_pred CCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCcc-CCHHHHHHHHHHHHH
Confidence 134444421111 267778888763 2356778777642 4557765 4 9999999999
Q ss_pred hCCEEEEecCCcccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
||+++|+|+++. +++..... ..+ .+|++++ .|+++ +|..+|++++++++++.+.
T Consensus 240 ~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi~t~--sK~lg-----~G~pigav~~~~~i~~~~~ 298 (433)
T PRK08117 240 HGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDIMTI--AKGIA-----SGLPLSAVVASKELMEQWP 298 (433)
T ss_pred cCCEEEEecchh-ccCccccchhHhhcCCCCCEeeh--hhhcc-----CCCcceeEEEcHHHHhhcc
Confidence 999999999875 33211111 122 2577655 57775 3567889999988776553
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-09 Score=100.91 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHh--------CC
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQM--------AG 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~--------~g 103 (302)
+..-++.++|.+++.-+ ...+..++||.|+++++...|.+- ++...|......||......+. .|
T Consensus 99 e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~T-----gr~~viaf~~afHG~T~galslT~~~~~~~~~ 173 (447)
T COG0160 99 EPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYT-----GRPGVIAFDGAFHGRTLGALSLTGSKPPYKAG 173 (447)
T ss_pred hhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHh-----CCCcEEEECCcccccchhhHHhccCccccccC
Confidence 56677888888887652 235667899999889999888762 2344555556678876554331 11
Q ss_pred -----CEEEEeecCCC--C----------CCCHHHHHHHHhc---cCCCeEEEEEecC-CCceeccc---cHHHHHHHHH
Q psy7357 104 -----MSVEPVSVRKD--G----------TIDFSDLETKVKK---NKETLSCLMITYP-STFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 -----~~v~~i~~~~~--g----------~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~ 159 (302)
-.|..+|.... + .-..+.+++.+.. ...+++++++..- ..-|++.+ -++++.++|+
T Consensus 174 ~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~ 253 (447)
T COG0160 174 FGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCR 253 (447)
T ss_pred CCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHH
Confidence 23777776431 1 1124446665532 2246788888753 46677743 3899999999
Q ss_pred HhCCEEEEecCCcccccccCCCCc------c--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRPGD------Y--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p~~------~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~ 227 (302)
+||+++|+|.+|. +.+ +.|. + .+||++.+ |.++ ||-.+|.+..+++++..-||...+
T Consensus 254 ~~gillI~DEVQt-G~G---RTG~~fa~E~~gv~PDivt~a--K~ig-----~G~Pl~avv~r~ei~~~~~g~~~~ 318 (447)
T COG0160 254 EHGILLIADEVQT-GFG---RTGKMFAFEHFGVEPDIVTLA--KSLG-----GGLPLSAVVGRAEIMDWPPGGHGG 318 (447)
T ss_pred HcCCEEEEecccc-CCC---ccccchhhhhcCCCCCEEEec--cccc-----CCCceeEEeccHHhcccCCcccCC
Confidence 9999999999983 221 2222 2 37999994 8886 366788899999998877776654
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.4e-10 Score=105.89 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. ++. .++.+||++|+++++...|.|...++...+.+||..+ ..||.+.......+
T Consensus 85 ~~~~~la~~l~~~~p~~~~~-v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 163 (423)
T PRK05964 85 EPAERLAQRLVALTPGGLDH-VFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHAL 163 (423)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccccc
Confidence 445678888888874 444 4557899999889999888876544433455655544 56776644332111
Q ss_pred -----CEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEec-C-CCceecc---ccHHHHHHHHHHhCCEEEEecCC
Q psy7357 104 -----MSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITY-P-STFGVFE---ENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 104 -----~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~---~di~~I~~ia~~~g~llivD~a~ 171 (302)
..+..+|+..+ ...+++++++.++++.+++++|++.. . +..|+.. +.+++|.++|+++|+++|+|+++
T Consensus 164 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 243 (423)
T PRK05964 164 YTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA 243 (423)
T ss_pred ccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 12334444221 11238889999976657888888764 2 3456542 14999999999999999999987
Q ss_pred cccccccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 172 MNAQVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 172 ~~~~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. +++..... ....+|+++. .|+|+ .|+-.+|.+++++++.+.+.
T Consensus 244 t-g~gr~G~~~a~~~~~v~pDi~~~--~K~l~----gG~~p~~av~~~~~i~~~~~ 292 (423)
T PRK05964 244 T-GFGRTGTLFACEQAGVSPDIMCL--SKGLT----GGYLPLAATLCTAEIFEAFY 292 (423)
T ss_pred h-CCCcCcchhHHHhcCCCCCeeee--ehhhh----cCcccceEEEEcHHHHHhhh
Confidence 3 23211011 1124688877 48885 22346888999988777653
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=102.40 Aligned_cols=168 Identities=23% Similarity=0.261 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCCE-------
Q psy7357 35 LIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGMS------- 105 (302)
Q Consensus 35 ~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~~------- 105 (302)
...++.++|++++. ++. .++.++|++|+++++...|.| ..+++|+. ....||.+.......+..
T Consensus 94 ~~~~la~~l~~~~p~~~~-v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 166 (428)
T PRK12389 94 LEIEFAKMLKEAIPSLEK-VRFVNSGTEAVMTTIRVARAY------TGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTP 166 (428)
T ss_pred HHHHHHHHHHHhCCCCcE-EEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCChHHHHHhcCCcccccCCC
Confidence 34567777777764 443 456789999988888888876 33455554 455788665544322211
Q ss_pred ------------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEe
Q psy7357 106 ------------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 106 ------------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD 168 (302)
+..+|. -|++.+++.++++++++++|+++.- +..|.+. + +++|.++|+++|+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~-p~~~yl~~l~~lc~~~g~llI~D 240 (428)
T PRK12389 167 DSAGVPKSIAQEVITVPF-----NDIEALKEALDKWGDEVAAVLVEPIVGNFGIVE-PKPGFLEAVNELAHEAGALVIYD 240 (428)
T ss_pred CCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEE
Confidence 111111 2789999999866677888888752 4567765 4 999999999999999999
Q ss_pred cCCccccccc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 169 GANMNAQVGL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 169 ~a~~~~~~~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.--..+. ..--...+|+++. .|.++ ||-.+|.+++++++++.+.
T Consensus 241 EV~tG~Rt~~~~a~~~~gv~PDivt~--gK~lg-----gG~Pi~av~~~~~i~~~~~ 290 (428)
T PRK12389 241 EVITAFRFMYGGAQDLLGVEPDLTAL--GKIIG-----GGLPIGAYGGRKDIMEQVA 290 (428)
T ss_pred ccccccccCcchhhHHhCCCCCeeee--chhhc-----CCCceeEEeEHHHHHhhhc
Confidence 9874111110 0001124799887 48775 2444677788888877663
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=108.06 Aligned_cols=166 Identities=15% Similarity=0.119 Sum_probs=109.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccH-HHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNP-ASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~-~~~~~~g 103 (302)
+.-+.+++.++++.|+++++.+. +.+..++|+.+.+++.+.+. .+++++++.. ..||... ..++..|
T Consensus 47 s~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~--------~~~~~~l~~~~G~fg~r~~~~a~~~g 118 (365)
T PLN02452 47 GKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC--------KPGDKADFVVTGSWSKKAAKEAKKYC 118 (365)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhC
Confidence 45677899999999999999853 34455677777767777665 4566655554 3444332 2566777
Q ss_pred CEEEEeecCCCC---CCCHHHHHHHHhccCCCeEEEEEecC-CCcee-ccccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 104 MSVEPVSVRKDG---TIDFSDLETKVKKNKETLSCLMITYP-STFGV-FEENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 104 ~~v~~i~~~~~g---~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~-~~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
...+.....+.. ..|+++++. + ++.+.|.+++- +.+|+ +. |++++.+ +++++|+++.++...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~v~~~hnETstGv~~~-~~~~i~~------~~lvVDa~Ss~g~~pi 186 (365)
T PLN02452 119 KTNVIASGKDEKYTKIPSVSEWEL--T---PDAKFVHICANETIHGVEFK-DYPDVGN------VPLVADMSSNFLSKPV 186 (365)
T ss_pred CCcEEEecCCCCCCCCCChHHcCC--C---CCCcEEEECCCCCCCcEecC-cccccCC------CeEEEECCccccCccc
Confidence 644433222222 457766522 2 45666776663 47899 47 7888753 7899999875554443
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+..++++|+ .++||.|+ | ||+|+++++++++++++.
T Consensus 187 -dv~~~~v~~--~saqK~lG-P-----~Gl~~v~vr~~~l~~~~~ 222 (365)
T PLN02452 187 -DVSKYGVIY--AGAQKNVG-P-----SGVTIVIIRKDLIGNARP 222 (365)
T ss_pred -CHHHcCEEE--EecccccC-C-----CCeEEEEEcHHHHhhccc
Confidence 456676655 57799885 5 689999999988776643
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-09 Score=99.97 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++... ...++.+||++|+++++...+.+ +.+.+|+.. ...||.+.......+
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 156 (421)
T PRK09792 83 ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAH------TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKI 156 (421)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCCccccc
Confidence 34457777888876422 23456679999988888887765 344555544 457887654433221
Q ss_pred -C-----EEEEeecCC--CCC---CCHHHHHHHHhc--cCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEE
Q psy7357 104 -M-----SVEPVSVRK--DGT---IDFSDLETKVKK--NKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVY 166 (302)
Q Consensus 104 -~-----~v~~i~~~~--~g~---iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~lli 166 (302)
+ .+..+|+.. ++. -|++.+++.+++ ..+++++|+++-- ++.|+..++ +++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK09792 157 GFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI 236 (421)
T ss_pred CCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 1 134444422 121 245788888864 2356788877642 466764324 8999999999999999
Q ss_pred EecCCc-cccccc-CCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 167 LDGANM-NAQVGL-CRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 167 vD~a~~-~~~~~~-~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|.++. ++..+. ..... ...|++++ .|+++ ||.++|++++++++++.+.
T Consensus 237 ~DEv~tg~gr~G~~~a~~~~~~~pDi~t~--gK~l~-----~G~pigav~~~~~i~~~~~ 289 (421)
T PRK09792 237 ADEVQSGFARTGKLFAMDHYADKPDLMTM--AKSLA-----GGMPLSGVVGNANIMDAPA 289 (421)
T ss_pred EeccccCCCCCCchhHHHhcCCCCcEEEe--ehhhc-----CCCceEEEEEcHHHHhccC
Confidence 999864 111110 00011 24688877 58886 3578999999988776654
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=102.73 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------C
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------M 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------~ 104 (302)
+...++.++++++++-+ ...++.+|||+|+++++...+.++..++...+.+|+.. ...||.+.......| +
T Consensus 97 ~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~ 176 (453)
T PRK06943 97 EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAY 176 (453)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhccc
Confidence 34567888888888643 23456789999988888887776544443334555554 457887654332221 1
Q ss_pred -----EEEEeecCCC-C-----------CCCHHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHHHHHHhC
Q psy7357 105 -----SVEPVSVRKD-G-----------TIDFSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 105 -----~v~~i~~~~~-g-----------~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
.+..+|.... + .-|++++++.++++.+++++|+++- . ...|++.+ -++++.++|+++|
T Consensus 177 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~g 256 (453)
T PRK06943 177 DPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYG 256 (453)
T ss_pred ccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcC
Confidence 1333443211 1 0146788888876667899999875 2 34566532 4899999999999
Q ss_pred CEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. +++-.... . ...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 257 illI~DEV~T-G~GRtG~~fa~~~~gv~PDivt~--gKgl~-----gG~~Pi~av~~~~ei~~~~ 313 (453)
T PRK06943 257 VHLIADEIAV-GCGRTGTFFACEQAGVWPDFLCL--SKGIS-----GGYLPLSLVLSRDAIFAAF 313 (453)
T ss_pred CEEEeechhh-CCCCCcchhHHHhCCCCCCeEee--ehhhc-----cCcccceEEEEcHHHHHhh
Confidence 9999999863 22211000 1 123799999 48876 35 2478888888877655
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-09 Score=99.11 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcC-CCCCEEEEc-CCCCcccHHHHHhCCCE------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDA-HHRNVCLIP-VSAHGTNPASAQMAGMS------ 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~-~~~d~Vlv~-~~~hg~~~~~~~~~g~~------ 105 (302)
+...++.++|+++++.....++.+|||+|+++++...+.|....|. .++++|+.- ...||.+.......+-.
T Consensus 82 ~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~ 161 (408)
T PRK04612 82 APPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGY 161 (408)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCC
Confidence 3455778888887753233566889999988999988887644432 124455544 45788765544322211
Q ss_pred ------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc---cHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 106 ------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 106 ------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
+..+|. -|++.+++.++. +++++|++.-.+ ..|++.+ -+++|.++|+++|+++|+|+++. ++
T Consensus 162 ~~~~~~~~~~~~-----~d~~~l~~~~~~--~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~ 233 (408)
T PRK04612 162 EPLPGGFRYVDF-----NDVEALEAAMAG--GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GM 233 (408)
T ss_pred CCCCCCceEcCC-----CCHHHHHHhhCC--CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CC
Confidence 122222 388999998862 455555554323 3445542 38999999999999999999874 22
Q ss_pred cccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.... ....-+|++++ .|+++ ||.++|++++++++.+.+.
T Consensus 234 gr~G~~~a~~~~~~~pdi~t~--~K~l~-----~G~piga~~~~~~~~~~~~ 278 (408)
T PRK04612 234 GRTGTLFAHWQEQVTPDIVTL--AKALG-----GGFPIGAMLAGPKVAETMQ 278 (408)
T ss_pred CcCCchhhhhhcCCCCCEEEE--cchhc-----CCCceEEEEECHHHHhhhc
Confidence 21100 01123577777 48776 3678999998877665543
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=103.79 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHh-CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC----------
Q psy7357 36 IGELETDLCEIT-GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG---------- 103 (302)
Q Consensus 36 ~~e~~~~l~~l~-g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g---------- 103 (302)
..++.+++++++ +.+. .+..++|++|+++++..++.+ ..+++|+..+. .||.........|
T Consensus 92 ~~~la~~L~~~~~~~~~-v~~~~sGseA~e~Aik~a~~~------~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 164 (426)
T PRK00062 92 EVELAELVIELVPSIEM-VRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPD 164 (426)
T ss_pred HHHHHHHHHHhCCCCCE-EEEecCHHHHHHHHHHHHHHH------hCCCeEEEEcCccCCchhhhhhccCccccccCCCC
Confidence 346777888776 4544 456789999988888887765 23566666655 5665432222111
Q ss_pred --CEEE-----EeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceecccc----HHHHHHHHHHhCCEEEEecCC
Q psy7357 104 --MSVE-----PVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEEN----ITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 104 --~~v~-----~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~d----i~~I~~ia~~~g~llivD~a~ 171 (302)
.... .+.+ -..|++++++.++++.+++++|++.. ++..|.+. + +++|.++|+++|+++|+|+++
T Consensus 165 ~~~~~~~~~~~~~~~---~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~-~~~~~l~~l~~l~~~~~~llI~DEv~ 240 (426)
T PRK00062 165 SPGVPEDFAKHTLTA---PYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVP-PKPGFLEGLRELCDEHGALLIFDEVM 240 (426)
T ss_pred CCCCCcccccceEEc---CCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeech
Confidence 0000 0111 01389999999975556788888874 45678775 4 899999999999999999997
Q ss_pred cccc--cccCCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 172 MNAQ--VGLCRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 172 ~~~~--~~~~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. ++ +.......+ ..|++++ +|.|+ +|+.+|++++++++++.+.
T Consensus 241 ~-G~r~g~~~~~~~~~~~pDi~~~--gK~l~-----~G~p~ga~~~~~~i~~~~~ 287 (426)
T PRK00062 241 T-GFRVALGGAQGYYGVTPDLTTL--GKIIG-----GGLPVGAFGGRREIMEQLA 287 (426)
T ss_pred h-ccccCCccHHHHhCCCcchHhh--hhHhh-----CCCcceeeeEHHHHHHhhc
Confidence 4 22 111111112 2576655 58775 3566888898988877663
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.9e-09 Score=100.15 Aligned_cols=180 Identities=15% Similarity=0.154 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~------- 104 (302)
+...++.+++++++..+. ..++.+||++|+++++...+.+....|...+.+|+. ....||.+.......|.
T Consensus 95 ~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 174 (460)
T PRK06541 95 PPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPF 174 (460)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhcccc
Confidence 455677888888865322 245678999998899988887754333223455554 45678877554332211
Q ss_pred -----EEEEeecCCC-----CCCC--------HHHHHHHHhcc-CCCeEEEEEec-CCCceecccc----HHHHHHHHHH
Q psy7357 105 -----SVEPVSVRKD-----GTID--------FSDLETKVKKN-KETLSCLMITY-PSTFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 -----~v~~i~~~~~-----g~iD--------~~~l~~~i~~~-~~~t~~V~i~~-Pn~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..+|.+.. ..-| ++.+++.++++ ++++++|++.. .+..|.+. + +++|.++|++
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~-~~~~yl~~l~~lc~~ 253 (460)
T PRK06541 175 EPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFP-PPPGYFERVREICDR 253 (460)
T ss_pred CCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCcc-CCHHHHHHHHHHHHH
Confidence 1333443210 0012 36788888643 34566666543 25667775 4 9999999999
Q ss_pred hCCEEEEecCCc-cccccc-CCCC--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVGL-CRPG--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~~-~~p~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+|+++|+|+++. ++..+. .... ...+|+++. .|.++ ||. .+|.+++++++++.+
T Consensus 254 ~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~--gK~l~-----~G~~pigav~~~~~i~~~~ 312 (460)
T PRK06541 254 YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITC--AKGIT-----SGYSPLGAMIASDRLFEPF 312 (460)
T ss_pred cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEe--ccccc-----CCccceeEEEEcHHHHHHh
Confidence 999999999872 221110 0011 123699986 48776 354 588888887776544
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=100.51 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=98.9
Q ss_pred eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCCEEE------EeecCCCC-CCCHHHHHH
Q psy7357 53 SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGMSVE------PVSVRKDG-TIDFSDLET 124 (302)
Q Consensus 53 ~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~~v~------~i~~~~~g-~iD~~~l~~ 124 (302)
.++++||++|+++++..++.+ .++++|++. ...||+........+.+.. .++..... ..|++++++
T Consensus 87 ~~~~~SGseA~~~Al~~ar~~------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~ 160 (375)
T PRK04260 87 AFFCNSGAEANEAAIKIARKA------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKA 160 (375)
T ss_pred EEEcCccHHHHHHHHHHHHHh------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHH
Confidence 456788988887887777654 345566665 4578766554432222110 00000001 248999999
Q ss_pred HHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccccccCCC---Cc--cCCcEEEeCCCc
Q psy7357 125 KVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVGLCRP---GD--YGSDVSHLNLHK 195 (302)
Q Consensus 125 ~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK 195 (302)
.++ +++++|+++.+ +++|++.++ ++++.++|+++|+++++|+++. +++.-..+ .. ...|++++ +|
T Consensus 161 ~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~t~--sK 234 (375)
T PRK04260 161 LVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIFTL--AK 234 (375)
T ss_pred hcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEEEe--cc
Confidence 886 67889999887 477887533 8999999999999999999873 33211111 11 23677765 58
Q ss_pred ccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 196 TFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 196 ~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+ +|.++|++++++++.+.+.
T Consensus 235 ~l~-----~G~~ig~~~~~~~~~~~~~ 256 (375)
T PRK04260 235 GLA-----NGVPVGAMLAKSSLGGAFG 256 (375)
T ss_pred ccc-----CCcceEEEEEcHHHHhhcC
Confidence 775 2567999999988776653
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=99.34 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCCE----
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGMS---- 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~~---- 105 (302)
..+...++.++|+++++.+ ...+..+||++|+++++..++.|....|.+++.+|+. ....||......+..|.+
T Consensus 96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~ 175 (460)
T PRK12403 96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE 175 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence 3466788999999998733 2345678999998899998888754333222333333 345688765544332221
Q ss_pred -------EEEeecCCC----CC--------CCHHHHHHHHh-ccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHh
Q psy7357 106 -------VEPVSVRKD----GT--------IDFSDLETKVK-KNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEH 161 (302)
Q Consensus 106 -------v~~i~~~~~----g~--------iD~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~ 161 (302)
+..+|.... .. .+++++++.+. +.++++++|+++.- +.-|.+.++ ++++.++|+++
T Consensus 176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~ 255 (460)
T PRK12403 176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY 255 (460)
T ss_pred cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 333432110 00 12456766663 33357788887642 455776522 99999999999
Q ss_pred CCEEEEecCCcccccccCCC---Cc--cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.... .. ..+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 256 g~lLI~DEV~t-GfGRtG~~~a~e~~gv~PDiv~~--gK~lg-----gG~~Piga~v~~~~i~~~~ 313 (460)
T PRK12403 256 DVLLCADEVIG-GFGRTGEWFAHEHFGFEPDTLSI--AKGLT-----SGYVPMGGLVLSKRIAEAL 313 (460)
T ss_pred CCEEEEecccc-CCCcCchhhhhhhcCCCCCeEEE--ccccc-----ccccceEEEEECHHHHHHH
Confidence 99999999873 22211000 11 23699987 58876 342 355555777766554
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-09 Score=101.46 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHH-Hh-C--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASA-QM-A-------- 102 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~-~~-~-------- 102 (302)
+...++.++++++++++.+ .+.+||++|+++++...|.+ +.+++|+.-+ ..||.+.... .. .
T Consensus 115 ~~~~~lAe~l~~~~~~~~v-~F~nSGtEA~e~AlrlAR~~------TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~ 187 (453)
T PRK07046 115 EDAAWVGEELARRFGLPYW-QVATTATDANRFVLRWARAV------TGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPG 187 (453)
T ss_pred HHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHHHHHh------hCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCC
Confidence 3455678888888887654 46789999988888888876 4556666544 5778653322 10 0
Q ss_pred --CC------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecC
Q psy7357 103 --GM------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 103 --g~------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a 170 (302)
|. .+..+|. -|++++++.+. ++++++|+++-- ...|.+.++ ++++.++|+++|+++|+|++
T Consensus 188 ~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV 260 (453)
T PRK07046 188 LLGQVHDLTATTRVVEF-----NDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDET 260 (453)
T ss_pred CCCCCccccCceEeeCC-----CCHHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcc
Confidence 11 1122222 38999999995 367888888642 345666433 89999999999999999999
Q ss_pred Cc--ccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 171 NM--NAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 171 ~~--~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+. .+.++...--...+|+++. .|.++ ||-.+|.++.++++++.+
T Consensus 261 ~tfr~g~Gg~~~~~gv~PDi~t~--gK~lg-----gG~Pi~av~g~~~i~~~~ 306 (453)
T PRK07046 261 HTISSGPGGYTRAHGLEPDFLVV--GKPIA-----GGVPCAVYGFSAELAERA 306 (453)
T ss_pred ccCccCCcchhHHhCCCccceee--hhhhc-----CCCcceeeeehHHHHHHH
Confidence 75 2444321111224799987 58776 344488888898877655
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.07 E-value=8e-09 Score=100.66 Aligned_cols=168 Identities=16% Similarity=0.209 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHH--hCCC------
Q psy7357 35 LIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQ--MAGM------ 104 (302)
Q Consensus 35 ~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~--~~g~------ 104 (302)
...++.+++++++. ++. ..+.+||++|+++++...|.| +.+++|+.- ...||.+..... ..+.
T Consensus 140 ~~~~lAe~l~~~~p~~~~-v~f~~SGsEA~e~AlklAR~~------tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~ 212 (474)
T PLN02482 140 LENVLAEMVIDAVPSVEM-VRFVNSGTEACMGVLRLARAY------TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLP 212 (474)
T ss_pred HHHHHHHHHHHhCCCCCE-EEEeCChHHHHHHHHHHHHHh------cCCCEEEEECCccCCCcchhhhhcCCCccccCCC
Confidence 44577788888774 444 446789999988888888876 445565554 457775532111 1110
Q ss_pred -----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEec
Q psy7357 105 -----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 -----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~ 169 (302)
++..+|. -|++++++.++++++++++|++..- +..|.+.+ -++++.++|+++|+++|+|+
T Consensus 213 ~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DE 287 (474)
T PLN02482 213 DSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDE 287 (474)
T ss_pred CCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111221 2899999999876677888877652 45576642 26789999999999999999
Q ss_pred CCcccc-ccc-CCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 170 ANMNAQ-VGL-CRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~~~~-~~~-~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. ++ .+. .....+ .+|++++ .|.++ ||-.+|.+++++++++.+.
T Consensus 288 V~t-GfR~g~~ga~~~~gv~PDi~t~--gK~lg-----gG~Pigav~g~~ei~~~~~ 336 (474)
T PLN02482 288 VMT-GFRIAYGGAQEYFGITPDLTTL--GKVIG-----GGLPVGAYGGRREIMEMVA 336 (474)
T ss_pred ccc-CeecCcchHhHHhCCCCCEEEe--cchhh-----CCCceEEEEEcHHHHHhhc
Confidence 873 22 110 001112 3699877 48776 3444677788888877663
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.2e-09 Score=100.09 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. ++. .++.+|||+|+++++...+.|...+|...+.+||.- ...||.+.......|
T Consensus 94 ~~~~~lAe~L~~~~p~~~~~-v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~ 172 (461)
T PRK07482 94 EASITLSKRIIDRAPAGMSK-VYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQH 172 (461)
T ss_pred HHHHHHHHHHHHhCCCCcCE-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhc
Confidence 556778888888874 444 456789999988999888877543443335565654 457886543322111
Q ss_pred -----CEEEEeecCC--C----C-------CCCHHHHHHHHhc-cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHH
Q psy7357 104 -----MSVEPVSVRK--D----G-------TIDFSDLETKVKK-NKETLSCLMITYP-STFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 -----~~v~~i~~~~--~----g-------~iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~ 160 (302)
-.+..++.+. . + .-|++++++.+++ .++++++|+++-- ...|++.+ -+++|+++|++
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~ 252 (461)
T PRK07482 173 FDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKK 252 (461)
T ss_pred cCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence 1123333221 1 1 0156888888853 3467888888742 34466532 48999999999
Q ss_pred hCCEEEEecCCcccccccCC---C--CccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLCR---P--GDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~---p--~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+|+++|+|+++. +++-... - -...+|+++. .|.++ || ..+|.+++++++++.+
T Consensus 253 ~giLlI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~~i~~~~ 311 (461)
T PRK07482 253 YDILLIADEVVT-GFGRLGSMFGSDHYGIEPDLITV--AKGLT-----SAYAPLSGSIVGEKVWDVL 311 (461)
T ss_pred hCCEEEEecccc-CCCcCcchhhHHhcCCCCCEEEE--ccccc-----cCccccceeeecHHHHHHH
Confidence 999999999863 2211100 0 1124799998 58886 34 3467777787766544
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=98.54 Aligned_cols=176 Identities=17% Similarity=0.154 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|+++++.. ...++.+|||+|+++++...+.| ..+.+|+.- ...||.+.......+.
T Consensus 84 ~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 157 (443)
T PRK08360 84 VEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAY------TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRAL 157 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHh------cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccC
Confidence 45668888898888653 23556789999988998888876 345555554 4678876543332221
Q ss_pred -----EEEEeecCCCC-----C-------CCHHHHHHHHhc--cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHh
Q psy7357 105 -----SVEPVSVRKDG-----T-------IDFSDLETKVKK--NKETLSCLMITYP-STFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 105 -----~v~~i~~~~~g-----~-------iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~ 161 (302)
.+..+|..... . -+++.+++.+++ +.+++++|+++-- +++|.+.+ -+++|.++|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~ 237 (443)
T PRK08360 158 VGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH 237 (443)
T ss_pred CCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 24444442210 0 234567777753 2367888888732 57786532 389999999999
Q ss_pred CCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 162 GGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 162 g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|+++|+|.++. ++..+ ..... ....|+++. .|+++ +|.++|++++++++++.+.
T Consensus 238 g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~-----~G~pigav~~~~~i~~~~~ 295 (443)
T PRK08360 238 GILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLG-----GGLPISATIGRAEIMDSLP 295 (443)
T ss_pred CCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--ccccc-----CCceeEEEEEcHHHHhhhc
Confidence 99999999874 11111 10111 123688876 58776 3678999999988777664
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=96.01 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCC-------CCEEE-EcCCCCcccHHHHHhCCC-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHH-------RNVCL-IPVSAHGTNPASAQMAGM- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~-------~d~Vl-v~~~~hg~~~~~~~~~g~- 104 (302)
+...++.++++++++.+. .+..+||++|+++++...+.+...++..+ +.+|+ +....||.+.......+-
T Consensus 57 ~~~~~la~~l~~~~~~~~-v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~ 135 (382)
T PLN00144 57 IPQVELAKRLVASSFADR-VFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKE 135 (382)
T ss_pred HHHHHHHHHHHhcCCCCe-EEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCc
Confidence 345678888888876654 45678999998899888887743222111 34444 445678877554432221
Q ss_pred -----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceecc-cc--HHHHHHHHHHhCCEEEEec
Q psy7357 105 -----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFE-EN--ITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 -----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~-~d--i~~I~~ia~~~g~llivD~ 169 (302)
.+..+|. -|++++++.+.. +++++|+++- .|+.|++. ++ +++|.++|+++|+++|.|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DE 208 (382)
T PLN00144 136 QYRTPFEPLMPGVTFVEY-----GNLEAARKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDE 208 (382)
T ss_pred cccccCCCCCCCeEEeCC-----CCHHHHHHhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1233332 279999998862 5677777653 14545552 25 8999999999999999999
Q ss_pred CCc-ccccc-cCC--CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 170 ANM-NAQVG-LCR--PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~-~~~~~-~~~--p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. .+..+ ... .....+|++++ .|+++ +|-++|++++++++++.+.
T Consensus 209 v~tg~gr~g~~~~~~~~~~~PDi~t~--sK~l~-----~G~pig~v~~~~~~~~~~~ 258 (382)
T PLN00144 209 VQCGLGRTGYLWAHEAYGVEPDIMTL--AKPLA-----GGLPIGAVLVTEKVASAIN 258 (382)
T ss_pred hhhCCCccchHhhhhhcCCCCCEEEe--ccccc-----CCcceEEEEEcHHHHhccC
Confidence 863 11111 100 11234688887 58886 3567999999988887664
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=98.61 Aligned_cols=182 Identities=17% Similarity=0.210 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM-------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~-------- 104 (302)
+...++.++|+++++.....++.+||++|+++++...|.|...+|...+.+|+.- ...||.+.......+.
T Consensus 89 ~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~ 168 (451)
T PRK07678 89 EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYE 168 (451)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccC
Confidence 3456788889998865544567789999988999988887644442234555554 4578876554332221
Q ss_pred ----EEEEeecCCCCC---------CC---HHHHHHHHh-ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCC
Q psy7357 105 ----SVEPVSVRKDGT---------ID---FSDLETKVK-KNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGG 163 (302)
Q Consensus 105 ----~v~~i~~~~~g~---------iD---~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~ 163 (302)
.+..+|.+.... .| ++.+++.++ ++.+++++|+++-- ...|.+.+ -+++++++|+++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~ 248 (451)
T PRK07678 169 PLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGA 248 (451)
T ss_pred CCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 123333221110 11 234666775 33467888888752 34566642 28999999999999
Q ss_pred EEEEecCCc-ccccc----cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 164 QVYLDGANM-NAQVG----LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 164 llivD~a~~-~~~~~----~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+|+++. ++..+ ... -...+|+++. .|.+++ |+-.+|.+++++++++.+.
T Consensus 249 llI~DEV~tGfGRtG~~~~~~~-~gv~PDivt~--gK~lgg----G~~Pi~av~~~~~i~~~~~ 305 (451)
T PRK07678 249 LLISDEVICGFGRTGKAFGFMN-YGVKPDIITM--AKGITS----AYLPLSATAVKKEIYEAFK 305 (451)
T ss_pred EEEEeehhhcCCcCchhHHHHh-cCCCCCEEEe--eccccc----CCcceeEEEEcHHHHHHHh
Confidence 999999863 22211 111 1123799998 487762 3234888888888776553
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-08 Score=96.68 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++.-. ...++.++|++|+++++...|.+ ..+.+|+ .....||.+.......+
T Consensus 76 ~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 149 (420)
T TIGR00700 76 EGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSY------TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKS 149 (420)
T ss_pred hHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh------cCCCcEEEECCCcCCCcHHHHHhcCCCccccc
Confidence 34567778888887421 23566789999988888887776 2344444 55568887755443211
Q ss_pred -C-----EEEEeecCCCCC-----------CCHHHHHHHHh--ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHH
Q psy7357 104 -M-----SVEPVSVRKDGT-----------IDFSDLETKVK--KNKETLSCLMITYP-STFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 -~-----~v~~i~~~~~g~-----------iD~~~l~~~i~--~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~ 160 (302)
+ .+..+|...... -+++.+++.+. .+++++++|+++-- ...|.+.+ .+++|.++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~ 229 (420)
T TIGR00700 150 GFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE 229 (420)
T ss_pred CCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence 1 233344321000 12567777763 34578888888642 35566531 28999999999
Q ss_pred hCCEEEEecCCc-ccccc-cC--CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVG-LC--RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~-~~--~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|.|.++. .+..+ .. ......+|++++ .|+++ +|.++|++++++++++.+.
T Consensus 230 ~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~l--sK~l~-----~G~pig~v~~~~~i~~~~~ 288 (420)
T TIGR00700 230 HGIVFIADEVQTGFARTGAMFACEHEGPEPDLITT--AKSLA-----DGLPLSGVTGRAEIMDAPA 288 (420)
T ss_pred cCCEEEEEecccCCcccchhHHHhhcCCCCCEEEe--ecccc-----CCcceEEEEecHHHHhhcC
Confidence 999999999863 11111 10 111224798886 48776 4789999999988877664
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=97.67 Aligned_cols=173 Identities=14% Similarity=0.157 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhCC---CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCC------
Q psy7357 35 LIGELETDLCEITGY---DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~---~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~------ 104 (302)
...++.+++++++.. +. .++.+||++|+++++...+.+ ..+.+|+. ....||.+.......+.
T Consensus 84 ~~~~la~~l~~~~p~~~~~~-~~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 84 SYVTLAERINALAPIDGPAK-TAFFTTGAEAVENAVKIARAY------TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred HHHHHHHHHHHhCCCCCCce-EEEeCCcHHHHHHHHHHHHHh------hCCCeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 345677788887653 33 455789999988888887765 33445554 44678877654432221
Q ss_pred -------EEEEeecCCC--C---CCCHHHHHHHHhc--cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEE
Q psy7357 105 -------SVEPVSVRKD--G---TIDFSDLETKVKK--NKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVY 166 (302)
Q Consensus 105 -------~v~~i~~~~~--g---~iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~lli 166 (302)
.+..+|.... + ..|++.+++.+++ +++++++|++..- +..|+..+ .+++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK06777 157 GFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLI 236 (421)
T ss_pred CCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 1223332211 1 1247778888863 3467888877642 45565322 49999999999999999
Q ss_pred EecCCcccccccC---CCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 167 LDGANMNAQVGLC---RPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 167 vD~a~~~~~~~~~---~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++. +++-.. ....+ .+|+++. .|.++ ||.++|++++++++++.+.
T Consensus 237 ~DEv~t-g~gr~g~~~~~~~~~~~pDiv~~--sK~l~-----~G~pigav~~~~~i~~~~~ 289 (421)
T PRK06777 237 ADEVQT-GFARTGKLFAMEYYDVKPDLITM--AKSLG-----GGMPISAVVGRAEVMDAPA 289 (421)
T ss_pred Eechhh-CCccCCchhhhhhcCCCCCEEee--ehhhc-----CCCceEEEEEcHHHHhccC
Confidence 999874 222111 11122 3688865 47665 4688999999988777654
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-08 Score=97.30 Aligned_cols=175 Identities=19% Similarity=0.253 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++.-. ...++.+||++|+++++...|.+ ..+.+|+. ....||.+.......+
T Consensus 85 ~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~------tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~ 158 (445)
T PRK08593 85 EPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAY------TGRPYIISFTNAYHGSTYGSLSMSGISLNMRR 158 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCcHHHHhhcCCCccccc
Confidence 55677888899987532 23456789999988888887766 23445554 4567887755432222
Q ss_pred ------CEEEEeecCCC-----CCCC-------HHHHHHHHhcc--CCCeEEEEEecC-CCceeccc---cHHHHHHHHH
Q psy7357 104 ------MSVEPVSVRKD-----GTID-------FSDLETKVKKN--KETLSCLMITYP-STFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 ------~~v~~i~~~~~-----g~iD-------~~~l~~~i~~~--~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~ 159 (302)
..+..+|.... +..+ ++++++.++++ .+++++|+++.. +..|.+.+ -+++|.++|+
T Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~ 238 (445)
T PRK08593 159 KYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCR 238 (445)
T ss_pred CCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence 12344554221 1111 24555555432 367888888764 45576641 2999999999
Q ss_pred HhCCEEEEecCCcccccccCC---CCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCR---PGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~---p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++|+|+++. +++.... ... ..+|+++. .|.++ ||..+|++++++++++.+.
T Consensus 239 ~~g~llI~DEv~t-g~GrtG~~~a~~~~gv~pDi~t~--gK~l~-----~G~p~gav~~~~~i~~~~~ 298 (445)
T PRK08593 239 EHGILFAVDDIQQ-GLGRTGKWSSISHFNITPDLMSF--GKSLA-----GGMPMSAIVGRKEIMESLE 298 (445)
T ss_pred HcCCEEEEechhh-CCCcCchHHHHHhcCCCCCEeee--ccccc-----CCcccEEEEEcHHHHhhhc
Confidence 9999999999873 2211100 011 23688877 48775 3456888999988877664
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=102.04 Aligned_cols=174 Identities=19% Similarity=0.248 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 35 LIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 35 ~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
...++.++|+++.. ++.+ ++..|||.|++.++..++.|+..+|+.++.+++.- +..||.+....+..|
T Consensus 88 Pa~~LA~~L~~~aP~~~l~~v-Ff~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~ 166 (449)
T COG0161 88 PAIELAEKLAELAPEGGLDHV-FFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHA 166 (449)
T ss_pred hHHHHHHHHHHhCCCCCccEE-EEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhh
Confidence 37789999999988 5554 56789999988999999999999886555555544 357887655433222
Q ss_pred ------CEEEEeecCC------CCC------CCHHHHHHHHhccC-CCeEEEEEecC---CCceeccc---cHHHHHHHH
Q psy7357 104 ------MSVEPVSVRK------DGT------IDFSDLETKVKKNK-ETLSCLMITYP---STFGVFEE---NITDVCELI 158 (302)
Q Consensus 104 ------~~v~~i~~~~------~g~------iD~~~l~~~i~~~~-~~t~~V~i~~P---n~~G~~~~---di~~I~~ia 158 (302)
.++..+|... ++. -+.++|++.|.++. +++++++++ | ...|++.+ -++++.+||
T Consensus 167 ~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~E-Pv~g~agG~~~pp~~Yl~~vr~iC 245 (449)
T COG0161 167 FYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVE-PVVGGAGGMLVPPPGYLKRVREIC 245 (449)
T ss_pred hccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEec-ccccccCCcccCChHHHHHHHHHH
Confidence 1234444321 121 23678999998887 455555554 4 23677643 389999999
Q ss_pred HHhCCEEEEecCCcccccccCCCCcc--------CCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 159 HEHGGQVYLDGANMNAQVGLCRPGDY--------GSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 159 ~~~g~llivD~a~~~~~~~~~~p~~~--------gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
++||+++|.|++- .+++ +.|.+ -+|++|.+ |.|+. |- .+|.+++++++.+.+
T Consensus 246 ~ky~ILlI~DEV~-tGFG---RTG~~FA~e~~gi~PDi~~~a--KGLT~-----GY~Pl~a~l~~~~I~~~~ 306 (449)
T COG0161 246 DKYGILLIADEVA-TGFG---RTGKMFACEHAGIVPDILCLA--KGLTG-----GYLPLSAVLTSDRIYEAF 306 (449)
T ss_pred HHcCcEEEeecce-eCCC---cCchhhhhhhcCCCCCeeeec--ccccc-----cchhhHhHhhhHHHHHHH
Confidence 9999999999862 2322 23322 36999994 98873 42 466666776655543
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-08 Score=96.55 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|++++..+ ...++.+|||+|+++++...|.+... +.+.+|+.. ...||.+.......+-
T Consensus 117 ~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~ 193 (442)
T TIGR03372 117 PLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP---RGKFTFIAASGAFHGKSLGALSATAKPAFRKPF 193 (442)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhh---cCCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence 45567888898887543 23456789999988888888876421 123455544 4578877654433221
Q ss_pred -----EEEEeecCCCCCCCHHHHHHHHhc---cCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEecCC
Q psy7357 105 -----SVEPVSVRKDGTIDFSDLETKVKK---NKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 105 -----~v~~i~~~~~g~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD~a~ 171 (302)
.+..+|. -|.+++++.+++ +.+++++|++..- +.-|.+. + ++++.++|+++|+++|+|+++
T Consensus 194 ~p~~~~~~~~p~-----~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~-p~~~yl~~l~~lc~~~g~llI~DEV~ 267 (442)
T TIGR03372 194 MPLLPGFHHVAF-----GDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVIL-PPEGYLPAVRALCDEFGALLILDEVQ 267 (442)
T ss_pred CCCCCCCEEeCC-----CCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEeecc
Confidence 1233333 267888877753 3467888888652 4557765 4 899999999999999999998
Q ss_pred cccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 172 MNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
. +++..... ..+ .+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 268 t-G~GRtG~~~a~e~~gv~PDivt~--gK~lg-----~G~~Pigavv~~~~i~~~~ 315 (442)
T TIGR03372 268 T-GMGRTGKMFACEHEGVQPDILCL--AKALG-----GGVMPIGATIATEAVFSVL 315 (442)
T ss_pred c-CCCccccchhhhhcCCCCCeeee--hhhhc-----CCcccceEEEecHHHHHhh
Confidence 3 33211110 011 3699886 48775 34 2366677788877766
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=97.80 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++... ...++.+||++|+++++...|.+...+|.+.+.+|+.-+ ..||.+.......|
T Consensus 99 ~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~ 178 (460)
T PRK06916 99 VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVY 178 (460)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCccccccc
Confidence 34467778888887532 235678899999889998888775444433455655544 57786654433222
Q ss_pred ----CEEEEeecCC------CC------CCCHHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHHHHHHhC
Q psy7357 104 ----MSVEPVSVRK------DG------TIDFSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 104 ----~~v~~i~~~~------~g------~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
..+..+|... .+ .-|++++++.++++.+++++|+++- . ...|++.+ -++++.++|+++|
T Consensus 179 ~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g 258 (460)
T PRK06916 179 SSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYN 258 (460)
T ss_pred CCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 1233444321 00 1246778888876667899999875 2 34565532 3899999999999
Q ss_pred CEEEEecCCcccccccCCC-----CccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANMNAQVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. +++-.... ....+|+++. .|.++ || ..+|.+++++++++.+
T Consensus 259 ~llI~DEV~T-G~GRtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~Pi~av~~~~ei~~~~ 315 (460)
T PRK06916 259 VLFITDEVAT-GFGRTGKMFACEHENVTPDIMTA--GKGLT-----GGYLPIAITVTTDEIYNAF 315 (460)
T ss_pred CEEEeechhh-CCCcCchhhHHHhcCCCCCeeee--ehhhh-----cCccccceeeecHHHHHHh
Confidence 9999999863 33211000 1123799988 58775 35 3578888888776544
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-08 Score=94.68 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-----
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM----- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~----- 104 (302)
+...++.++|++++. ++ ..++.+|||+|+++++...+.+ ..+++|+.- ...||.+.......+.
T Consensus 97 ~~~~~lAe~L~~~~p~~~~~-~v~f~~SGsEA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~ 169 (441)
T PRK05769 97 EPAVELAERLVEIAPGGFEK-KVFFTNSGTESNEAAIKIARYH------TGRKYIIAFLGAFHGRTYGSLSLTASKPVQR 169 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCC-EEEECCchHHHHHHHHHHHHHH------hCCCeEEEECCCcCCccHHHHHhcCCCcccc
Confidence 455678888888875 23 3456789999988998888876 234555554 4578877554332211
Q ss_pred --------EEEEeecCCCCC-------------CCHHHHHH-HHhc--cCCCeEEEEEecC-CCceecccc----HHHHH
Q psy7357 105 --------SVEPVSVRKDGT-------------IDFSDLET-KVKK--NKETLSCLMITYP-STFGVFEEN----ITDVC 155 (302)
Q Consensus 105 --------~v~~i~~~~~g~-------------iD~~~l~~-~i~~--~~~~t~~V~i~~P-n~~G~~~~d----i~~I~ 155 (302)
.+..+|.+.... -+++.+++ .+++ +.+++++|++..- +..|.+. + +++|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~-~~~~~l~~l~ 248 (441)
T PRK05769 170 KGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVV-PPKNFFKELR 248 (441)
T ss_pred cCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcC-CCHHHHHHHH
Confidence 234444321000 12344666 3332 2367888877642 3557765 5 99999
Q ss_pred HHHHHhCCEEEEecCCcccccccC---CCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLC---RPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~---~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++|+++|+++|+|+++. +++... ....+ .+|++++ .|.++ ||..+|.++++++++..+++.
T Consensus 249 ~l~~~~g~lli~DEv~t-G~gr~G~~~a~~~~gv~pDivt~--~K~l~-----~G~p~gav~~~~~i~~~~~~~ 314 (441)
T PRK05769 249 KLADKYGILLIDDEVQT-GMGRTGKMFAIEHFGVEPDIITL--AKAIA-----GGLPLGAVIGRAELMFLPPGS 314 (441)
T ss_pred HHHHHcCCEEEEechhh-CCCcccceehhhccCCCCCEEEE--ccccc-----CCcccEEEEEehhhhhcCCCC
Confidence 99999999999999874 222110 11122 3589876 47765 356688899998887665543
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-09 Score=99.07 Aligned_cols=229 Identities=15% Similarity=0.139 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-------CCCcc-cHHHHHhCCCE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-------SAHGT-NPASAQMAGMS 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-------~~hg~-~~~~~~~~g~~ 105 (302)
....++++.++++||.+.+ +...+|..+|.....++. ..+++++.+.. ..|-. ....+...|+.
T Consensus 74 pSv~~Lee~vael~G~E~a-lpthqGRgaE~Il~~~~~-------~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~ 145 (467)
T TIGR02617 74 RSYYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLI-------KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT 145 (467)
T ss_pred chHHHHHHHHHHHhCCceE-EECCCCchHHHHHHHhhc-------ccccccccccccccccceEEEEecchHHHHHcCce
Confidence 4678999999999999985 344567666633333322 02455544322 22222 23466788888
Q ss_pred EEEeecC----------CCCCCCHHHHHHHHhccC-CCeEEEE--EecCCC-ceec---cccHHHHHHHHHHhCCEEEEe
Q psy7357 106 VEPVSVR----------KDGTIDFSDLETKVKKNK-ETLSCLM--ITYPST-FGVF---EENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 106 v~~i~~~----------~~g~iD~~~l~~~i~~~~-~~t~~V~--i~~Pn~-~G~~---~~di~~I~~ia~~~g~llivD 168 (302)
++.++.+ .+|.+|+++|+++|+++. ++...+. +++ |. -|.. + ++++++++|+++|+.+++|
T Consensus 146 ~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~-N~~GGqpvsle-nlr~V~~la~~~GIplhLD 223 (467)
T TIGR02617 146 ARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITC-NSAGGQPVSLA-NLKAVYEIAKKYDIPVVMD 223 (467)
T ss_pred eecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEE-ecCCCEEeCHH-HHHHHHHHHHHcCCcEEEE
Confidence 8876432 368999999999998542 2332222 233 42 3432 4 7999999999999999999
Q ss_pred cCCcc--cc-------ccc-CCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC----CCCCCCCCccc-
Q psy7357 169 GANMN--AQ-------VGL-CRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH----LAPFLPVHPLS- 227 (302)
Q Consensus 169 ~a~~~--~~-------~~~-~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~----l~~~lpg~~~~- 227 (302)
+|-.+ +. +.. .++.+ ..+|.++.++.|.++.| -+|+++.+++ +.+++..+.+.
T Consensus 224 gARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp------vGg~Lag~d~~~~~l~~~~~~~~i~~ 297 (467)
T TIGR02617 224 SARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP------MGGLLCFKDDSFFDVYTECRTLCVVQ 297 (467)
T ss_pred hHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc------ccceEEecchhHHHHHHHHHhhcccc
Confidence 97543 22 111 12221 35899999999977754 4578888854 44555554441
Q ss_pred --------CCCCcchhhhHHHHhhHh---hHH--HHHHHHH-HHh-cccccccccCCCcceeEEEEEEeccc
Q psy7357 228 --------SIDSSIGAVSAAHYGSAS---ILP--ISWAYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDF 284 (302)
Q Consensus 228 --------~~~~~l~~~~a~~~~~~~---~~~--~~~~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~ 284 (302)
.+...+.+++...+-..- +.. ..-.|+. +|. .|+.++. +. -|-+.||...|
T Consensus 298 EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~Gvpi~~--~G----ghav~iDa~~~ 363 (467)
T TIGR02617 298 EGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEIGVVCQQ--AG----GHAAFVDAGKL 363 (467)
T ss_pred cCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhCCCcEEe--cC----ccEEEEehhhh
Confidence 122233344422222211 111 1114655 777 6999875 45 68888886644
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-08 Score=94.22 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHh--C--CC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC----
Q psy7357 34 QLIGELETDLCEIT--G--YD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG---- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~--g--~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g---- 103 (302)
+...++.++|++++ + .+ .+.+..+|||+|+++++..+|.+ +.+++|+. ....||.+.......+
T Consensus 78 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~ 151 (412)
T TIGR02407 78 EAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKV------TGRSNVVSFTNAFHGMTLGSLSVTGNRFK 151 (412)
T ss_pred HHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhh------cCCCeEEEECCCcCCchHHHHHhcCCccc
Confidence 44566777777764 2 32 22333479999988988888766 33455554 4567887755433211
Q ss_pred --------CEEEEeecCCC---CCCCHHHHHHHHhccC---CCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEE
Q psy7357 104 --------MSVEPVSVRKD---GTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQV 165 (302)
Q Consensus 104 --------~~v~~i~~~~~---g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~ll 165 (302)
..+..+|.+.. ..-|++.+++.++++. +++++|++..- +..|++. .-+++|.++|+++|+++
T Consensus 152 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~ll 231 (412)
T TIGR02407 152 RQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILL 231 (412)
T ss_pred ccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 13444554211 1135778899887543 46788876542 4567642 25899999999999999
Q ss_pred EEecCCcccccc---c--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 166 YLDGANMNAQVG---L--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 166 ivD~a~~~~~~~---~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+|.++. +++- . .......+|+++. .|+++ .||-++|++++++++ +.+
T Consensus 232 I~DEV~t-G~GRtG~~~a~~~~~v~PDi~~~--~K~lg----~~G~pigav~~~~~~-~~~ 284 (412)
T TIGR02407 232 IVDDIQA-GCGRTGTFFSFEPAGIEPDIVCL--SKSIS----GYGLPLALTLIKPEL-DVW 284 (412)
T ss_pred EEechhh-CCCccchhHHhcccCCCCCEEEe--chhcc----CCccceeEEEEchhh-hcc
Confidence 9999874 2211 0 0111235799887 48775 225679999998776 443
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-09 Score=98.12 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=122.8
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHH--HH--HhhcC--CCCCEEEEcCCCCcccHHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQC--YH--QAQDA--HHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~--~~--~~~g~--~~~d~Vlv~~~~hg~~~~~ 98 (302)
|+..++--.-+++-.+++++.|-+. +.+..-+|+.+++-++.+.|- +. +..|. -|.-.+..|+-.|-+....
T Consensus 134 EiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~ka 213 (510)
T KOG0629|consen 134 EIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKA 213 (510)
T ss_pred EecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHH
Confidence 6666666666777888999999765 455544577665444444331 10 01110 1222344555566555566
Q ss_pred HHhCC---CEEEEeecCCCCCCCHHHHHHHHhccCCC---eEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCC
Q psy7357 99 AQMAG---MSVEPVSVRKDGTIDFSDLETKVKKNKET---LSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 99 ~~~~g---~~v~~i~~~~~g~iD~~~l~~~i~~~~~~---t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~ 171 (302)
+..+| ..++.|+.++.|.+++++||+.|-+.+.+ +..|-.+..+ .+|.++ |+..|+++|++|+.|++||+|
T Consensus 214 Aa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD-dL~~iadiC~k~~lWmHvDAA- 291 (510)
T KOG0629|consen 214 AAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD-DLNGIADICEKHKLWMHVDAA- 291 (510)
T ss_pred HHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC-cHHHHHHHHHhcCEEEEeecc-
Confidence 77777 68999999999999999999999765454 4444444443 689999 899999999999999999987
Q ss_pred cccccccCC-------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 172 MNAQVGLCR-------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 172 ~~~~~~~~~-------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
++.+.+-+ .+...+|-|+-+.||.++.|+ ..+.+.++.
T Consensus 292 -wGGglLmS~k~R~kl~Giera~SvtwnpHK~~gapl-----qCsa~l~r~ 336 (510)
T KOG0629|consen 292 -WGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPL-----QCSAFLTRE 336 (510)
T ss_pred -cccccccChhhHhhccCccccCceeecHHHhhcCcc-----hhhHHHHHH
Confidence 44433322 234568999999999998765 445566663
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-08 Score=94.49 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHh----CCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhC-----
Q psy7357 34 QLIGELETDLCEIT----GYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMA----- 102 (302)
Q Consensus 34 ~~~~e~~~~l~~l~----g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~----- 102 (302)
+...++.+++++++ +++ .+.+..+||++|+++++..+|.| +.+++||. ....||.+.......
T Consensus 82 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~ 155 (425)
T PRK09264 82 TAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKV------TGRTNIVAFTNGFHGMTLGSLAVTGNSHK 155 (425)
T ss_pred HHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEECCccCCccHHHHHhcCCccc
Confidence 34556777777765 233 22333479999988998888876 34455554 456788765433221
Q ss_pred ----C---CEEEEeecCCC---CCCCHHHHHHHHhccC---CCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEE
Q psy7357 103 ----G---MSVEPVSVRKD---GTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQV 165 (302)
Q Consensus 103 ----g---~~v~~i~~~~~---g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~ll 165 (302)
+ ..+..+|.... ..-|++++++.+++++ +++++|++..- +..|++. ..+++|+++|++||+++
T Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~ll 235 (425)
T PRK09264 156 RQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILL 235 (425)
T ss_pred ccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEE
Confidence 1 13555665321 1137888999997532 46788877642 3456542 15999999999999999
Q ss_pred EEecCCcccccc---c--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 166 YLDGANMNAQVG---L--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 166 ivD~a~~~~~~~---~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
|+|+++. +++. . ..-....+|++++ .|+|+ .+|-.+|++++++++.
T Consensus 236 I~DEV~t-G~GrtG~~~~~~~~~v~PDi~t~--~K~l~----~~G~pigav~~~~~i~ 286 (425)
T PRK09264 236 IVDDIQA-GCGRTGTFFSFERAGITPDIVTL--SKSIS----GYGLPMALVLIKPELD 286 (425)
T ss_pred EEechhh-CCccccHHHHHhhcCCCCCEEEe--ccccC----CCccceEEEEEchhhh
Confidence 9999874 2221 0 0011234688887 48775 2255679999987764
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-08 Score=96.56 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHhC-------CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-
Q psy7357 34 QLIGELETDLCEITG-------YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g-------~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~- 104 (302)
+...++.+++++++. ++. .++.+|||+|+++++..+|.|...+|...+.+||.- ...||.+.......+-
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~~~~~-v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~ 185 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGRAPLSK-VFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIP 185 (472)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCCE-EEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCc
Confidence 345677778888764 233 466789999988999988887654443334555554 4578876544332221
Q ss_pred -----------EEEEeecCCC-----C-------CCCHHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHH
Q psy7357 105 -----------SVEPVSVRKD-----G-------TIDFSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCE 156 (302)
Q Consensus 105 -----------~v~~i~~~~~-----g-------~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ 156 (302)
.+..+|.... + ..+++.+++.++++.+++++|+++- . +..|++.+ -++++++
T Consensus 186 ~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~ 265 (472)
T PRK08742 186 LYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARE 265 (472)
T ss_pred ccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHH
Confidence 2333443210 1 1146788888875557889988875 1 34566422 4899999
Q ss_pred HHHHhCCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 157 LIHEHGGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 157 ia~~~g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+|+++|+++|+|+++. ++..+ +..-. ...+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 266 lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~-----gG~~Plaav~~~~ei~~~~ 328 (472)
T PRK08742 266 LCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL--SKGLT-----GGFLPLSAVLATQQLYDAF 328 (472)
T ss_pred HHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE--ccccc-----CCCCCcceeeccHHHHHHh
Confidence 9999999999999863 22111 10001 123799999 48886 352 477788887776544
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=98.52 Aligned_cols=179 Identities=18% Similarity=0.256 Sum_probs=128.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEe--eCchHHHHHHHHHHHHHHHHhhcC---CCCCEEEEcCCCCcc
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQ--PNSGAQGEYAGLRAIQCYHQAQDA---HHRNVCLIPVSAHGT 94 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~--~~~Ga~a~~a~l~a~~~~~~~~g~---~~~d~Vlv~~~~hg~ 94 (302)
++|-.+ +..++..+.-.|.-.++|.|++.+.+.+- +.+|++ +.+++.+.|...+-. -....|+++...|..
T Consensus 107 ~N~l~~-d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Se---s~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a 182 (491)
T KOG1383|consen 107 FNPLHP-DEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSE---SGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAA 182 (491)
T ss_pred cCccCc-cccchhHHHHHHHHHHHHHHhcCCccccCccccccch---HHHHHHHHHHHHHHhccCCCCccccchHHHHHH
Confidence 356666 78899999999999999999998754221 122233 556665555332211 123456676666665
Q ss_pred cHHHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHH-hCCEEEEecCC
Q psy7357 95 NPASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHE-HGGQVYLDGAN 171 (302)
Q Consensus 95 ~~~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~-~g~llivD~a~ 171 (302)
...+++..++++..+|+++ +..+|+.++.+.++ ++|.+|+..-|| ++|.++ |+++|.++.-+ +++.+++|++-
T Consensus 183 ~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~---eNti~lv~~~~~~p~G~~e-~ve~l~~l~~e~w~ipiHvDa~~ 258 (491)
T KOG1383|consen 183 FEKAARYFEVELREVPLDEGDYRVDPGKVVRMID---ENTIMLVGSLPNFPTGEIE-DVEKLADLLLEIWDIPIHVDACL 258 (491)
T ss_pred HHHHHhhEEEEEEeeeccccceEecHHHHHHHhc---cceEEEEEEcCCCCccchh-hHHHHHHHHHHHhCCceeecccC
Confidence 6667788899999999985 67899999999999 899999999898 899999 89999999999 99999999763
Q ss_pred cccccccCCC------CccC-----CcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 172 MNAQVGLCRP------GDYG-----SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 172 ~~~~~~~~~p------~~~g-----aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+++..| ..|+ .--+..++||.=..| +|+|++..+.
T Consensus 259 ----GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~-----~G~~~vl~r~ 304 (491)
T KOG1383|consen 259 ----GGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAP-----AGSSWVLYRN 304 (491)
T ss_pred ----ccccccccccCccccccCCCCceeEeeccceeeeee-----cCcEEEEEcc
Confidence 222222 2232 334666779954433 5888888873
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=98.84 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++|++++. .+. .++.++||+|+++++...+.|+..++...+.+|+.- ...||.+.......+-
T Consensus 90 ~~~~~lae~L~~~~p~~~~~-v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~ 168 (466)
T PRK07030 90 EPVIELSERLVKITPPGLSR-CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTET 168 (466)
T ss_pred HHHHHHHHHHHHhCCCCcCE-EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCcccccc
Confidence 455677788888774 333 456789999988998888877554553344555544 4578876554332221
Q ss_pred ------EEEEeecCCC-----C-------CCCHHHHHHHHhccCCCeEEEEEec--CCCceeccc---cHHHHHHHHHHh
Q psy7357 105 ------SVEPVSVRKD-----G-------TIDFSDLETKVKKNKETLSCLMITY--PSTFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 105 ------~v~~i~~~~~-----g-------~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~~---di~~I~~ia~~~ 161 (302)
.+..+|.... + .-|++++++.++++.+++++|+++- ....|++.+ -+++++++|+++
T Consensus 169 ~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~ 248 (466)
T PRK07030 169 YKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY 248 (466)
T ss_pred CCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc
Confidence 2333443211 1 1136778888876667899998875 234466532 389999999999
Q ss_pred CCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.. .--...+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 249 g~llI~DEV~T-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~ei~~~~ 306 (466)
T PRK07030 249 GVHLIHDEIAV-GFGRTGTMFACEQAGIRPDFLCL--SKALT-----GGYLPLAAVLTTDTVYQAF 306 (466)
T ss_pred CCEEEEeehhh-CcCccccchHHHhcCCCCCEEee--ehhcc-----CCcccceEEEecHHHHHHH
Confidence 99999999863 222110 001123799999 58876 452 578888888876654
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-08 Score=94.34 Aligned_cols=175 Identities=15% Similarity=0.207 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++.-+ ...++.+|||+|+++++...+.+ +.+.+|+ .....||.+.......+
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 156 (425)
T PRK07495 83 ENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAA------TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKV 156 (425)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCccHHHhhhcCCCccccc
Confidence 45667888888887532 23567889999988988887766 2344555 45567887654332111
Q ss_pred -C-----EEEEeecCC--CCC---CCHHHHHHHHhc--cCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEE
Q psy7357 104 -M-----SVEPVSVRK--DGT---IDFSDLETKVKK--NKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVY 166 (302)
Q Consensus 104 -~-----~v~~i~~~~--~g~---iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~lli 166 (302)
+ .+..+|++. ++. -+++++++.+++ .++++++|+++.- ...|.+. .-+++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI 236 (425)
T PRK07495 157 GFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLI 236 (425)
T ss_pred CCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 1 344555532 221 125566777753 2356888877642 2456542 148999999999999999
Q ss_pred EecCCcccccccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 167 LDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 167 vD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|.++. +++.... .....+|++++ .|.++ ||-.+|++++++++++.+.
T Consensus 237 ~DEv~t-G~gr~G~~~a~~~~gv~pDi~tl--sK~l~-----~G~pigav~~~~~i~~~~~ 289 (425)
T PRK07495 237 ADEVQT-GFARTGKLFAMEHHEVAADLTTM--AKGLA-----GGFPLAAVTGRAEIMDAPG 289 (425)
T ss_pred Eechhh-cCCcCCCceeecccCCCCCEEee--hhhhc-----CCccceEEEEcHHHHhccC
Confidence 999874 2221111 11124688887 48776 3567899999988877654
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=97.77 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. ++. .++.++||+|+++++..+|.|...+|...+++||.- ...||.+.......+
T Consensus 90 ~~~~~lae~L~~~~p~~~~~-v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~ 168 (459)
T PRK05965 90 EPAIRLAAKLAERAPGSLNH-VYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRG 168 (459)
T ss_pred HHHHHHHHHHHhhCCCCcCE-EEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcc
Confidence 445678888888874 333 455788999988999988887654443335555544 457887643222111
Q ss_pred C-----EEEEeecCC--CC--CCC--------HHHHHHHHhccC-CCeEEEEEecC-CCceeccc---cHHHHHHHHHHh
Q psy7357 104 M-----SVEPVSVRK--DG--TID--------FSDLETKVKKNK-ETLSCLMITYP-STFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 104 ~-----~v~~i~~~~--~g--~iD--------~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~ 161 (302)
+ .+..+|... .. .-| ++++++.++++. +++++|+++-- ...|++.+ -+++++++|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~ 248 (459)
T PRK05965 169 FDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL 248 (459)
T ss_pred cCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc
Confidence 1 123343321 00 123 367888887543 67888888752 34465532 379999999999
Q ss_pred CCEEEEecCCcccccccC---CCC--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLC---RPG--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~---~p~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.. ... ...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 249 gillI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~~i~~~~ 306 (459)
T PRK05965 249 GILFVADEVIT-GFGRTGPLFACEAEGVVPDLMTV--AKGLT-----SGYVPMGAVLMSDHVYQGI 306 (459)
T ss_pred CCEEEEechhc-cCccCchhhhHhhcCCCCCeEEe--chhhc-----cCCcceeEEEEcHHHHHHH
Confidence 99999999863 221110 001 124799999 48886 35 2578888888877655
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-09 Score=98.99 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..+..+|||+|+++++...+.|...+| +++.+|+.. ...||.+.......+
T Consensus 86 ~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g-~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~ 164 (428)
T PRK07986 86 PPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSL 164 (428)
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEECCCcCCCcHhhhcccCCchhhhhc
Confidence 445677788888875321 345678999998899988887754443 234555544 457776644332211
Q ss_pred -----CEEEEeecCCC------CCCCHHHHHHHHhccCCCeEEEEEecC-C-Cceeccc---cHHHHHHHHHHhCCEEEE
Q psy7357 104 -----MSVEPVSVRKD------GTIDFSDLETKVKKNKETLSCLMITYP-S-TFGVFEE---NITDVCELIHEHGGQVYL 167 (302)
Q Consensus 104 -----~~v~~i~~~~~------g~iD~~~l~~~i~~~~~~t~~V~i~~P-n-~~G~~~~---di~~I~~ia~~~g~lliv 167 (302)
-.+..+|.... ..-|++++++.++++.+++++|++..- . ..|++.+ .+++|+++|+++|+++|+
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~ 244 (428)
T PRK07986 165 YKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIA 244 (428)
T ss_pred cCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 01233332111 123678889988765567888888752 3 4455421 389999999999999999
Q ss_pred ecCCcccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 168 DGANMNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 168 D~a~~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
|+++ .+++..... ..+ .+|+++. .|.++ || -.+|.+++++++++.+.
T Consensus 245 DEv~-tG~GrtG~~fa~~~~gv~PDi~t~--gK~l~-----gG~~p~~av~~~~~i~~~~~ 297 (428)
T PRK07986 245 DEIA-TGFGRTGKLFACEHAGIAPDILCL--GKALT-----GGTMTLSATLTTREVAETIS 297 (428)
T ss_pred eccc-cCCccCCCeeeecccCCCCCEEEe--chhhh-----CCcccCcchhchHHHHHHhh
Confidence 9997 444211111 112 3688886 58774 45 35677777877766553
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=97.91 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.++++++++ ++. .++.+|||+|+++++...+.|...+|...+.+|+.. ...||.+.......+
T Consensus 83 ~~~~~lae~L~~~~p~~~~~-v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~ 161 (422)
T PRK05630 83 EPAIKLTRKLLNLTDNGLDH-VFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHS 161 (422)
T ss_pred HHHHHHHHHHHhhCCCCcCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccc
Confidence 345678888888874 343 456789999988999988887544443334555544 457886654433222
Q ss_pred ------CEEEEeecCCCCCCC-------HHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHHHHHHhCCEE
Q psy7357 104 ------MSVEPVSVRKDGTID-------FSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCELIHEHGGQV 165 (302)
Q Consensus 104 ------~~v~~i~~~~~g~iD-------~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ia~~~g~ll 165 (302)
..+..+|.......+ .+.+++.+. +++++|+++- . ...|++.+ .++++.++|+++|+++
T Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~ll 238 (422)
T PRK05630 162 LWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILL 238 (422)
T ss_pred cccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 122334432111112 245555565 6889998875 1 34465422 5899999999999999
Q ss_pred EEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 166 YLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 166 ivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
|+|+++ .+++..... . ...+|+++. .|.++ || +.+|.+++++++.+.+
T Consensus 239 I~DEv~-tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~-----gG~~p~~av~~~~~i~~~~ 292 (422)
T PRK05630 239 IADEIA-TGFGRTGELFATLAAGVTPDIMCV--GKALT-----GGFMSFAATLCTDKVAQLI 292 (422)
T ss_pred EEecce-eCCCcCchhhHHHhcCCCCCeeee--echhh-----cCccccceeeccHHHHHHH
Confidence 999987 333211000 0 123689987 58775 35 5678888888877655
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-08 Score=97.24 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCccc---HHHHHhCCC---EE
Q psy7357 35 LIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTN---PASAQMAGM---SV 106 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~---~~~~~~~g~---~v 106 (302)
...++.++|+++++.. ....+.+||++|+++++...|.+ +.+.+|+. ....||.+ .......+- ..
T Consensus 94 ~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~ 167 (433)
T PRK00615 94 QEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGI------TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTL 167 (433)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCCcccCcccccCCCCcCcC
Confidence 4567778888887653 23456789999988888888876 34455554 45578854 211111110 00
Q ss_pred EE-e---ecCCC----CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 107 EP-V---SVRKD----GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 107 ~~-i---~~~~~----g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.. . +...+ ..-|++++++.+.++.+++++|++..- +..|.+.++ +++|.++|+++|+++|+|+++. +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G 246 (433)
T PRK00615 168 THLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-G 246 (433)
T ss_pred CCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-c
Confidence 00 0 00000 113789999999766567787777653 345766421 5799999999999999999973 3
Q ss_pred c--cccCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 Q--VGLCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~--~~~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+ +...... ...+|++++ .|.++ ||-.+|++++++++++.+
T Consensus 247 ~R~G~~ga~~~~gv~PDi~~~--gK~lg-----gG~p~~av~~~~~i~~~~ 290 (433)
T PRK00615 247 FRVAQGGAAAIYHVKPDITVY--GKILG-----GGLPAAAVVAHKSIMDHL 290 (433)
T ss_pred ccccHhHHHHhcCCCCCeEEE--ccccc-----CCcceeeeeecHHHHhhh
Confidence 2 1110011 124689886 58775 243478888898887766
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-08 Score=94.89 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++... ...++.++|++|+++++...|.+ .++++|+..+ ..||.+.......+
T Consensus 99 ~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~ 172 (443)
T PRK06058 99 EGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSY------TGRQAVVVFDHAYHGRTNLTMALTAKSMPYKS 172 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh------hCCCeEEEECCCcCcChHHHHhhcCCCccccc
Confidence 56668888898887532 23566889999988888877766 3345666555 46776655433211
Q ss_pred -C-----EEEEeecCC--CC----CC--------CHHHHHHHHhccCCCeEEEEEecCC-Cceeccc---cHHHHHHHHH
Q psy7357 104 -M-----SVEPVSVRK--DG----TI--------DFSDLETKVKKNKETLSCLMITYPS-TFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 -~-----~v~~i~~~~--~g----~i--------D~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~---di~~I~~ia~ 159 (302)
+ .+..+|... +. .. .++.+++.+. .+++++|++.--. ..|++.+ -+++|.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~ 250 (443)
T PRK06058 173 GFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCR 250 (443)
T ss_pred ccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence 1 123333211 00 01 1222333332 3678888765322 4466531 3899999999
Q ss_pred HhCCEEEEecCCccccc--c-cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQV--G-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~--~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++|+|+++. +++ + ..... ...+|+++. .|.++ ||..+|.+++++++++.+.
T Consensus 251 ~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~--gK~l~-----~G~Pi~av~~~~~i~~~~~ 310 (443)
T PRK06058 251 ENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITT--AKGIA-----GGLPLSAVTGRAEIMDAPH 310 (443)
T ss_pred HcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEE--ccccc-----CCCccEEEEEcHHHHhhcc
Confidence 9999999999874 222 1 00001 123699988 48776 3567899999988877654
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-09 Score=99.18 Aligned_cols=166 Identities=10% Similarity=0.056 Sum_probs=106.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE--EcCCCCcccHH-HHHhC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL--IPVSAHGTNPA-SAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl--v~~~~hg~~~~-~~~~~ 102 (302)
+.-+.+++.++++.++++++.+. +-+..++|+.+.+++.+.+. .++++++ +....++.... .++..
T Consensus 44 s~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll--------~~g~~~~~~~~tG~fg~r~~~ea~~~ 115 (364)
T PRK12462 44 SSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS--------RPGAAAPEYVTTGYWSRKAIGEASRV 115 (364)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC--------CCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 45678899999999999999843 34445556666656666654 4667543 44444544332 45566
Q ss_pred CCEEEEeecCC----CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 103 GMSVEPVSVRK----DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 103 g~~v~~i~~~~----~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
| ++..+...+ ...+|++++ .++ ++.+.|.+++- +.+|+..+++ .+.+++++++|++..+..-.
T Consensus 116 g-~v~~~~~~~~~~~~~~p~~~~~--~~~---~d~~~v~~t~NETstGv~~~~~------~~~~~~llvvD~sS~~~s~p 183 (364)
T PRK12462 116 A-AMRVVWDGAASGYRTLPSLAEL--DWD---ARAPFRHYVSNETVEGLQFPDA------AGLPDSPLIADMSSDFMSRP 183 (364)
T ss_pred C-CceEecCcCCCCCCcCCCHHHh--ccC---CCCcEEEEccCCCCceEecCcc------cccCCCeEEEEcCchhhCCC
Confidence 6 555443211 234566665 222 45666777763 4689887433 23368999999875332222
Q ss_pred cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 178 LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 178 ~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+..+| |++..+++|.|+ | ||+++++++++++++.+.
T Consensus 184 -id~~~~--dvi~agsQKnlg-P-----~Gltvvivs~~al~~~~~ 220 (364)
T PRK12462 184 -FDVEAY--GMVYAHAQKNLG-P-----AGVTVAIIRRALLERVPD 220 (364)
T ss_pred -CChHHc--cEEEeeccccCC-C-----CceEEEEECHHHHhhccc
Confidence 233444 999999999997 5 799999999988776543
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-08 Score=96.23 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++. ++. .++.++||+|+++++...|.|...++...+.+|+.-. ..||.........+
T Consensus 87 ~~~~~lae~L~~~~p~~~~~-v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 165 (429)
T PRK06173 87 EPAVELAQKLLEILPPSLNK-IFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHG 165 (429)
T ss_pred HHHHHHHHHHHhhCCCCcCE-EEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhh
Confidence 345677778888764 343 4567899999889999888876544433345555544 57775443222111
Q ss_pred -C-----EEEEeecCCC------CCCCHHHHHHHHhccCCCeEEEEEec--CCCceeccc---cHHHHHHHHHHhCCEEE
Q psy7357 104 -M-----SVEPVSVRKD------GTIDFSDLETKVKKNKETLSCLMITY--PSTFGVFEE---NITDVCELIHEHGGQVY 166 (302)
Q Consensus 104 -~-----~v~~i~~~~~------g~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~~---di~~I~~ia~~~g~lli 166 (302)
+ .+..+|.... ..-+++.+++.++++.+++++|+++- ....|++.+ -+++++++|+++|+++|
T Consensus 166 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI 245 (429)
T PRK06173 166 LFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLI 245 (429)
T ss_pred cccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 1 1233443210 01257778888876667899998875 134465521 48999999999999999
Q ss_pred EecCCcccccccCCC---Cc--cCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 167 LDGANMNAQVGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 167 vD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+|+++ .+++..... .. ..+||+++ .|.|+ || ..++.+++++++++.+
T Consensus 246 ~DEv~-tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~p~~a~~~~~~i~~~~ 298 (429)
T PRK06173 246 FDEIA-TGFGRTGKLFALEHAGVVPDIMCI--GKALT-----GGYLTLSATITTEAIAQTI 298 (429)
T ss_pred ecchh-cCCCcCCcchHHHhcCCCCCEEEe--ehhhh-----CCccccceEEecHHHHHHH
Confidence 99998 444321111 11 23689986 58774 45 4567777787766654
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-08 Score=94.46 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|+++++.+ .-.++.+|||+|+++++...|.+ ..+.+|+.. ...||.+.......+
T Consensus 96 ~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 169 (457)
T PRK05639 96 ERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFS------TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRG 169 (457)
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHHHcCCCcccccC
Confidence 45567888888887643 23456789999988888887765 345555554 467887754333211
Q ss_pred C-----EEEEeecCCCCC--------CCH--------HHHHHHHhc---cCCCeEEEEEecC-CCceeccc---cHHHHH
Q psy7357 104 M-----SVEPVSVRKDGT--------IDF--------SDLETKVKK---NKETLSCLMITYP-STFGVFEE---NITDVC 155 (302)
Q Consensus 104 ~-----~v~~i~~~~~g~--------iD~--------~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~---di~~I~ 155 (302)
+ .++.+|...... -|. +.+++.+.+ .++++++|+++-- ...|++.+ -++++.
T Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~ 249 (457)
T PRK05639 170 FSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELK 249 (457)
T ss_pred CCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHH
Confidence 1 245555532110 122 235554421 2467888888642 34466532 389999
Q ss_pred HHHHHhCCEEEEecCCcccccccCC---CC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCR---PG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~---p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++|+++|+++|+|+++. +++-... .. ...+|++++ .|.++. |-.+|.+++++++++...+.
T Consensus 250 ~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~~--gK~l~g-----G~pi~av~~~~~i~~~~~~~ 315 (457)
T PRK05639 250 KLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEVKPDLIIF--GKGVAS-----GMGLSGVIGRKELMDLTSGS 315 (457)
T ss_pred HHHHHcCCEEEEechhh-ccCcCchHHHHHhcCCCCCEEEe--chhhcC-----CCcceeEEehHHHHhhcCCC
Confidence 99999999999999874 3321100 00 124799997 588762 44588899998887744443
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-08 Score=93.50 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhCCC----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-----
Q psy7357 34 QLIGELETDLCEITGYD----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG----- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g----- 103 (302)
+...++.++|++++.-. ...+..+|||+|+++++...+.| +.+.+|+. ....||.+.......+
T Consensus 82 ~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~ 155 (442)
T TIGR00709 82 PLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY------TGRTNVISFSGGFHGMTIGALAVTGNLFAK 155 (442)
T ss_pred HHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCchHHHHhhcCChhhh
Confidence 45667888898887532 22344579999988888888876 33445554 4567887655443222
Q ss_pred --C-----EEEEeecCCCCCC--------CH----HHHHHHHh---ccCCCeEEEEEecC-CCceeccc---cHHHHHHH
Q psy7357 104 --M-----SVEPVSVRKDGTI--------DF----SDLETKVK---KNKETLSCLMITYP-STFGVFEE---NITDVCEL 157 (302)
Q Consensus 104 --~-----~v~~i~~~~~g~i--------D~----~~l~~~i~---~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~i 157 (302)
. .+..+|....... +. +.+++.++ +..+++++|+++.. +..|.+.+ -+++|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~l 235 (442)
T TIGR00709 156 NAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREV 235 (442)
T ss_pred ccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence 1 2334443211111 11 22344443 12256888888763 45565421 48999999
Q ss_pred HHHhCCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 158 IHEHGGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 158 a~~~g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
|+++|+++|+|+++. ++..+ +.... ...+|+++. .|.++ ||..+|.+++++++
T Consensus 236 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~-----~G~Pigav~~~~~~ 292 (442)
T TIGR00709 236 TRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVG-----GGLPLAVLLIAPEF 292 (442)
T ss_pred HHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEE--ccccc-----CCcccEEEEEchHH
Confidence 999999999999873 22111 10101 123699997 58776 25779999998774
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-08 Score=96.35 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. .+. .++.+||++|+++++...+.|...++...+.+||. ....||.........|
T Consensus 92 ~~~~~la~~L~~~~p~~~~~-v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~ 170 (445)
T PRK09221 92 PLAFELAERLAELAPGGLDH-VFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKM 170 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhc
Confidence 445678888888874 344 45678999998899988887754333223445554 4557776544322111
Q ss_pred -----CEEEEeecCC---C---CC-------CCHHHHHHHHhccC-CCeEEEEEecC-CCceecccc----HHHHHHHHH
Q psy7357 104 -----MSVEPVSVRK---D---GT-------IDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEEN----ITDVCELIH 159 (302)
Q Consensus 104 -----~~v~~i~~~~---~---g~-------iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~ 159 (302)
..+..+|... . +. .+++++++.++++. +++++|++..- +..|.+. + ++++.++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~-~~~~yl~~l~~lc~ 249 (445)
T PRK09221 171 FGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLV-PPKGYLQRLREICD 249 (445)
T ss_pred cCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCccc-CCHHHHHHHHHHHH
Confidence 1233344321 0 00 12467888887543 67888888752 4567776 4 999999999
Q ss_pred HhCCEEEEecCCcccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|+++|+|+++. +++..... ..+ .+|+++. .|.++ .|...+|.+++++++++.+
T Consensus 250 ~~g~llI~DEV~t-G~GRtG~~~~~~~~gv~PDi~~~--gK~l~----gG~~Pi~av~~~~~i~~~~ 309 (445)
T PRK09221 250 KHGILLIFDEVIT-GFGRLGAAFAAERFGVTPDIITF--AKGLT----NGAIPMGAVIASDEIYDAF 309 (445)
T ss_pred HcCCEEEEeehhh-CCCcCchhhHHHhcCCCCCEEEe--ccccc----cCcccceeeEEcHHHHHhh
Confidence 9999999999873 33211011 112 3589888 48775 2223477788887766654
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-08 Score=96.17 Aligned_cols=184 Identities=16% Similarity=0.194 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhC-CCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCCE---
Q psy7357 32 YEQLIGELETDLCEITG-YDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGMS--- 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g-~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~~--- 105 (302)
..+...++.++|.+++. .+. ..++.++|++|+++++..++.|....|...+++||.. ...||.........|..
T Consensus 131 ~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~ 210 (504)
T PLN02760 131 TTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALH 210 (504)
T ss_pred CcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhc
Confidence 34567788888888853 322 2456789999988999988877543442234455544 46788765443322211
Q ss_pred ---------EEEeecCC-------CC------CCCHHHHHHHHh-ccCCCeEEEEEecC-CCceecccc---HHHHHHHH
Q psy7357 106 ---------VEPVSVRK-------DG------TIDFSDLETKVK-KNKETLSCLMITYP-STFGVFEEN---ITDVCELI 158 (302)
Q Consensus 106 ---------v~~i~~~~-------~g------~iD~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia 158 (302)
+..++.+. .. ....+++++++. ++++++++|+++.- ...|.+.++ +++|+++|
T Consensus 211 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc 290 (504)
T PLN02760 211 QKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVL 290 (504)
T ss_pred cCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 22233211 00 011356777774 33356778777642 355777622 99999999
Q ss_pred HHhCCEEEEecCCc-ccccc-cCCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 159 HEHGGQVYLDGANM-NAQVG-LCRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 159 ~~~g~llivD~a~~-~~~~~-~~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|+++|+|+++. ++..+ ...-.. ..+|++++ .|.++. |.-.+|.+++++++++.+
T Consensus 291 ~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~lgg----G~~PigAv~~~~~i~d~~ 351 (504)
T PLN02760 291 KKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSL--AKALSS----AYMPIGAVLVSPEISDVI 351 (504)
T ss_pred HHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEe--cccccC----CccccceEeecHHHHhhh
Confidence 99999999999872 22111 100011 23799888 487762 222366688888877765
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.9e-08 Score=92.68 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++.-. ...++.+||++|+++++...|.+ ..+++|+. ....||.+.......+
T Consensus 97 ~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 97 EPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKY------TKRQGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHH------hCCCcEEEECCCcCccchhhhhhcCCCccccc
Confidence 55678888899988532 23567889999988998888876 23444554 4567887755443222
Q ss_pred ------CEEEEeecCC-----CCCCC-------HHHHHHHHhc--cCCCeEEEEEecCC-Cceecc--c-cHHHHHHHHH
Q psy7357 104 ------MSVEPVSVRK-----DGTID-------FSDLETKVKK--NKETLSCLMITYPS-TFGVFE--E-NITDVCELIH 159 (302)
Q Consensus 104 ------~~v~~i~~~~-----~g~iD-------~~~l~~~i~~--~~~~t~~V~i~~Pn-~~G~~~--~-di~~I~~ia~ 159 (302)
-.+..+|... .+..+ ++.+++.+.+ ..+++++|+++--. ..|.+. + .+++|.++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~ 250 (451)
T PRK06918 171 GFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICS 250 (451)
T ss_pred cCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHH
Confidence 1133344321 11111 2334444421 23567777776422 346542 1 3899999999
Q ss_pred HhCCEEEEecCCc-ccccc-cCCCCccC--CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANM-NAQVG-LCRPGDYG--SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~-~~~~~-~~~p~~~g--aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++|.|.++. ++..+ ......++ +|++++ .|+++ +|.++|++++++++++.+.
T Consensus 251 ~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~--sK~l~-----~G~pig~v~~~~~i~~~~~ 310 (451)
T PRK06918 251 EHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITV--SKSLG-----AGVPISGVIGRKEIMDESA 310 (451)
T ss_pred HcCCEEEEeccccCcCccCceehhHhcCCCCCEEee--ehhhc-----CCCccEEEEEcHHHHhccC
Confidence 9999999999863 21111 11112233 787766 48776 3689999999988776653
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-08 Score=94.34 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++. ++. .++.+|||+|+++++...+.|...++...+.+||.- ...||.........|
T Consensus 89 ~~~~~la~~l~~~~p~~~~~-v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~ 167 (442)
T PRK13360 89 PKAFELANRIAEIAPGGLNH-VFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKA 167 (442)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhc
Confidence 445678888888873 444 456789999988999888877433332234555544 457786544322111
Q ss_pred -----CEEEEeecCCC---CCC----------CHHHHHHHHhcc-CCCeEEEEEecC-CCceecccc----HHHHHHHHH
Q psy7357 104 -----MSVEPVSVRKD---GTI----------DFSDLETKVKKN-KETLSCLMITYP-STFGVFEEN----ITDVCELIH 159 (302)
Q Consensus 104 -----~~v~~i~~~~~---g~i----------D~~~l~~~i~~~-~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~ 159 (302)
-.+..+|...+ ... +++++++.+..+ .+++++|++..- ...|.+. + +++|+++|+
T Consensus 168 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~-~~~~fl~~lr~lc~ 246 (442)
T PRK13360 168 FGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLI-PPKGYLQRLREICD 246 (442)
T ss_pred cCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCcc-CCHHHHHHHHHHHH
Confidence 12334443211 000 256888888643 356777777653 3557776 5 999999999
Q ss_pred HhCCEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|+++|+|+++. +++..... . ...+|++++ .|.++. |.-.+|.+++++++++.+
T Consensus 247 ~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDivt~--gK~l~g----G~~P~gav~~~~~i~~~~ 306 (442)
T PRK13360 247 KHGILLIFDEVIT-GFGRLGAPFAAQYFGVTPDLLTC--AKGLTN----GAIPMGAVFVSSEIHDAF 306 (442)
T ss_pred HcCCEEEEechhh-CCCCCccchhhhhcCCCCceeee--eecccc----CccceEEEEEcHHHHHHh
Confidence 9999999999873 22211111 1 123688887 487752 222366677787766544
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-08 Score=94.20 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..++.+||++|+++++..++.+...++...+.+||. ....||.+.......+
T Consensus 92 ~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~ 171 (460)
T PRK06105 92 GPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSF 171 (460)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCccccccc
Confidence 556778889999875432 245678999998899988776654444223455554 4567887654322111
Q ss_pred ----CEEEEeecCCC------CC-------CCHHHHHHHHhc-cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHh
Q psy7357 104 ----MSVEPVSVRKD------GT-------IDFSDLETKVKK-NKETLSCLMITYP-STFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 104 ----~~v~~i~~~~~------g~-------iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~ 161 (302)
..+..+|.... +. .+++++++++.+ ..+++++|++..- ...|.+.+ -+++++++|+++
T Consensus 172 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~ 251 (460)
T PRK06105 172 DLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY 251 (460)
T ss_pred CCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 11233332210 00 124678888753 2357888888752 35566641 289999999999
Q ss_pred CCEEEEecCCc-ccccc-c--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANM-NAQVG-L--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~-~~~~~-~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. ++..+ + ..--...+|+++. .|.++. |.-.+|.+++++++++.+
T Consensus 252 ~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~--gK~lgg----G~~P~~av~~~~~i~~~~ 309 (460)
T PRK06105 252 DILLVADEVICGFGRTGNMFGCETFGIKPDILVM--SKQLSS----SYQPLSAVLMNEKVYDPI 309 (460)
T ss_pred CCeEEEeccccCCCcCchhhhHHhcCCCCCeeee--eccccc----CcccceEEEEcHHHHHHH
Confidence 99999999873 22111 0 0001123799988 487762 222467777887776554
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=92.06 Aligned_cols=175 Identities=15% Similarity=0.080 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCE-EEEcCCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNV-CLIPVSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~-Vlv~~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|+++++-. ...++.++|++|+++++..++.+ ..+.+ |......||.+.......|-
T Consensus 113 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 186 (459)
T PRK06082 113 ETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHI------TGNFKVVSLWDSFHGASLDAISVGGEACFRQGM 186 (459)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHh------cCCCEEEEEeCCCcCccHHHHhhcCCcccccCC
Confidence 56678888999998632 23456889999988888877766 23344 44555678876543332221
Q ss_pred -----EEEEeecCCC-----CCC------CHHHHHHHHhccCCCeEEEEEecCCCceecccc---HHHHHHHHHHhCCEE
Q psy7357 105 -----SVEPVSVRKD-----GTI------DFSDLETKVKKNKETLSCLMITYPSTFGVFEEN---ITDVCELIHEHGGQV 165 (302)
Q Consensus 105 -----~v~~i~~~~~-----g~i------D~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~d---i~~I~~ia~~~g~ll 165 (302)
.+..+|.... ... +++++++.++++ +++++|+++.-...|.+.++ +++++++|+++|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~ll 265 (459)
T PRK06082 187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLL 265 (459)
T ss_pred CCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 1233332110 011 146688888643 57888877643222443334 899999999999999
Q ss_pred EEecCCcccccccCCC---Cc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 166 YLDGANMNAQVGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 166 ivD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|+|+++. +++-.... .. ..+|+++. .|.++ .|.-.+|.+++++++.....
T Consensus 266 I~DEV~t-G~GRtG~~fa~e~~gv~PDiv~~--gKgl~----gG~~P~~av~~~~~i~~~~~ 320 (459)
T PRK06082 266 IIDEIPN-GMGRTGEWFTHQAYGIEPDILCI--GKGLG----GGLVPIAAMITKDKYNTAAQ 320 (459)
T ss_pred EEechhh-CCCccchhhHhHhhCCCCCEEEe--ccccc----CCCCcceEEEEcHHHHhhcc
Confidence 9999874 22211000 11 23799987 58776 23224777777877665443
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.1e-08 Score=93.81 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCCEEEE---
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGMSVEP--- 108 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~~v~~--- 108 (302)
+...++.++|++++.-+. ..++.+|||+|+++++...|.+... +.+.+|+.. ...||.+.......+-....
T Consensus 124 ~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~ 200 (459)
T PRK11522 124 PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP---RGKFTFIATSGAFHGKSLGALSATAKSTFRKPF 200 (459)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhcc---CCCcEEEEecCCCCCCcHHHhhhcCCcccccCC
Confidence 456677888888875322 3456789999988998888876311 123455555 45788776544433211111
Q ss_pred eecCCCC----CCCHHHHHHHHhc---cCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 109 VSVRKDG----TIDFSDLETKVKK---NKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 109 i~~~~~g----~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
.|..++- .-|.+++++.+++ +.+++++|++..- +..|.+.++ ++++.++|+++|+++|+|+++. +++.
T Consensus 201 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G~GR 279 (459)
T PRK11522 201 MPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-GMGR 279 (459)
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-cCCc
Confidence 1111110 1278889888863 2356788887753 455776521 9999999999999999999983 3321
Q ss_pred cCC---CCcc--CCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 178 LCR---PGDY--GSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 178 ~~~---p~~~--gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
... ...+ .+|+++. .|.|+ || -.+|.+++++++++.+
T Consensus 280 tG~~~a~e~~gv~PDivt~--gK~lg-----gG~~Pigav~~~~~i~~~~ 322 (459)
T PRK11522 280 TGKMFACEHENVQPDILCL--AKALG-----GGVMPIGATIATEEVFSVL 322 (459)
T ss_pred cchhhhhhccCCCCCEEEe--chhhh-----CCCccceeEEEcHHHHHHh
Confidence 110 0112 3699887 48776 34 2366666776666544
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-07 Score=91.23 Aligned_cols=180 Identities=15% Similarity=0.115 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|++++.-. ...++.++||+|+++++...+.|+..++...+++|+.-+ ..||.+.......+.
T Consensus 74 ~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~ 153 (447)
T PRK06917 74 EPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRF 153 (447)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccC
Confidence 55668888999988543 234567899999889988888776545534456666554 578877554432221
Q ss_pred -----EEEEeecCC--C---CC-------CCHHHHHHHHhccC-CCeEEEEEecC-C-Cceeccc---cHHHHHHHHHHh
Q psy7357 105 -----SVEPVSVRK--D---GT-------IDFSDLETKVKKNK-ETLSCLMITYP-S-TFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 105 -----~v~~i~~~~--~---g~-------iD~~~l~~~i~~~~-~~t~~V~i~~P-n-~~G~~~~---di~~I~~ia~~~ 161 (302)
.+..+|... . +. -|++.+++.++++. +++++|+++-- . .-|++.+ -++++.++|+++
T Consensus 154 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~ 233 (447)
T PRK06917 154 VSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY 233 (447)
T ss_pred CCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc
Confidence 122222211 0 00 13567888887553 46888888742 2 3345422 389999999999
Q ss_pred CCEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.... . ...+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 234 g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~~--gK~l~-----~G~~Pi~a~~~~~~i~~~~ 291 (447)
T PRK06917 234 DILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMTL--GKGLG-----AGYTPIAATVVSDRVMEPI 291 (447)
T ss_pred CCEEEEechhh-CcCcccchhhHHhcCCCCCEEEe--eehhc-----cCCcceEEEEEcHHHHHHH
Confidence 99999999874 33211100 0 123699988 48776 342 377788887776654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-07 Score=87.25 Aligned_cols=183 Identities=19% Similarity=0.178 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhC--------
Q psy7357 33 EQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMA-------- 102 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~-------- 102 (302)
.+...++.++|+++++-... .+...||++|+++++..++.++..+..+.+.+|+... ..||.........
T Consensus 58 ~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~ 137 (339)
T PF00202_consen 58 HPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKG 137 (339)
T ss_dssp EHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTT
T ss_pred ccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccccc
Confidence 35677889999999943332 4457899999888888877554433324556666555 5677664432211
Q ss_pred ----CCEEEEeecCCCCC-----CCHHHHHHHHh-ccCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEe
Q psy7357 103 ----GMSVEPVSVRKDGT-----IDFSDLETKVK-KNKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 103 ----g~~v~~i~~~~~g~-----iD~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD 168 (302)
.-.+..+|.+.... ...+++++.+. .+.+++++|+++-- ...|.+. +-+++|.++|+++|+++|+|
T Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~D 217 (339)
T PF00202_consen 138 FGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIAD 217 (339)
T ss_dssp TCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEE
T ss_pred ccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecc
Confidence 12456677642110 01122333332 22367888888752 3445442 13799999999999999999
Q ss_pred cCCcccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 169 GANMNAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 169 ~a~~~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+++. +++-..... ...+|+++.+ |+|+ ||-.+|.+++++++.+.+..
T Consensus 218 EV~t-G~gRtG~~~a~~~~gv~PDiv~~g--K~l~-----gG~p~sav~~~~~i~~~~~~ 269 (339)
T PF00202_consen 218 EVQT-GFGRTGKFFASEHYGVDPDIVTFG--KGLG-----GGLPISAVLGSEEIMEAFQP 269 (339)
T ss_dssp ETTT-TTTTTSSSSGHHHHTSSSSEEEEE--GGGG-----TTSSEEEEEEEHHHHTTSCT
T ss_pred cccc-cccccCCccceecccccCcccccc--cchh-----hhhhcccccccchhhccccc
Confidence 9863 222111111 1247999994 9887 35778889999988877743
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-08 Score=92.45 Aligned_cols=174 Identities=15% Similarity=0.196 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC--------C-
Q psy7357 36 IGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG--------M- 104 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g--------~- 104 (302)
..++.++++++.+.+. ..+..+||++|+++++..++.+. ++++.|.+....||.........+ +
T Consensus 86 ~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~-----~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~ 160 (425)
T PRK08088 86 YLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG 160 (425)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHh-----CCCeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence 3477888888877532 45678899998878888777652 345566666668887755333211 1
Q ss_pred ------EEEEeecCCCCC-C--CHHHHHHHHhc--cCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEec
Q psy7357 105 ------SVEPVSVRKDGT-I--DFSDLETKVKK--NKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ------~v~~i~~~~~g~-i--D~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD~ 169 (302)
....+|.+.++. . +++++++++++ +.+++++|+++.. +..|.+. ..+++|.++|+++|+++|.|.
T Consensus 161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De 240 (425)
T PRK08088 161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE 240 (425)
T ss_pred CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 111123222221 1 15678888862 2356777776542 2334432 148999999999999999999
Q ss_pred CCccccc--c-cCCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 170 ANMNAQV--G-LCRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~~~~~--~-~~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. +++ + ....... -+|+.++ .|+++ +|.++|++++++++++.+.
T Consensus 241 v~~-g~g~~g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~v~~~~~~~~~~~ 290 (425)
T PRK08088 241 VQT-GAGRTGTLFAMEQMGVAADLTTF--AKSIA-----GGFPLAGVTGRAEVMDAIA 290 (425)
T ss_pred ccc-CCCcCcchhHHhhcCCCCCEEEE--ecccc-----CCCcceeeEecHHHHhhcC
Confidence 864 221 1 1010112 2566665 58886 3688999999988776654
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-08 Score=92.68 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++|++++. ++. .++.+|||+|+++++...|.+ ..+.+|+.. ...||.+.......+.
T Consensus 95 ~~~~~lae~L~~~~p~~~~~-v~f~~SGsEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~ 167 (451)
T PRK06062 95 DARSEAARLIAERAPGDLSK-VFFTNGGADANEHAVRMARLH------TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPN 167 (451)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEcCChHHHHHHHHHHHHHh------hCCceEEEEeCCCCCCCHHHHhhcCCcccccC
Confidence 445677888888874 333 456789999988888888876 334555544 4678877554432221
Q ss_pred -----EEEEeecCCCC------CCC-------HHHHHHHHhcc-CCCeEEEEEecC-CCceecccc----HHHHHHHHHH
Q psy7357 105 -----SVEPVSVRKDG------TID-------FSDLETKVKKN-KETLSCLMITYP-STFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 -----~v~~i~~~~~g------~iD-------~~~l~~~i~~~-~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..++.+... .-| +++++++++.+ .+++++|++..- ..-|.+. + ++++.++|++
T Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~-p~~~yl~~lr~lc~~ 246 (451)
T PRK06062 168 DTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILV-PPPGYLAGVRELCDR 246 (451)
T ss_pred CCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCccc-CCHHHHHHHHHHHHH
Confidence 12223221100 013 67888888643 256788887652 3457665 4 9999999999
Q ss_pred hCCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lp 222 (302)
+|+++|+|+++. +++... .--...+|++++ .|.++ ||- .+|.+++++++++.+.
T Consensus 247 ~g~lLI~DEV~t-GfGRtG~~~a~~~~gv~PDi~t~--gK~lg-----gG~~Pigav~~~~~i~~~~~ 306 (451)
T PRK06062 247 HGIVLIADEVMA-GFGRTGKWFAIEHFGVVPDLITF--AKGVN-----SGYVPLGGVAISEAIAATFA 306 (451)
T ss_pred cCCEEEeecccc-CCCcCcHHHHHHhcCCCCCeeee--chhhh-----cCCcCcEEEEEcHHHHHHhc
Confidence 999999999874 222110 001124799987 58776 342 3666777777766553
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-08 Score=93.21 Aligned_cols=179 Identities=18% Similarity=0.174 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC------
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------ 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------ 103 (302)
+...++.++|+++++ ++. .++.+|||+|+++++...|.|....|...+++|+.. ...||.+.......+
T Consensus 86 ~~~~~lae~L~~~~~~~~~~~-v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~ 164 (449)
T PRK07481 86 PRAIELSYELIDMFAPEGMRR-VFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRR 164 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCCE-EEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccccc
Confidence 455678888888873 343 456788999988999988887644443334555544 457886654332111
Q ss_pred ------CEEEEeecCCC-----CCCCHHH--------HHHHHh-ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHH
Q psy7357 104 ------MSVEPVSVRKD-----GTIDFSD--------LETKVK-KNKETLSCLMITYP-STFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 ------~~v~~i~~~~~-----g~iD~~~--------l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~ 159 (302)
..+..++.+.. +..|+++ +++.+. ++++++++|++.-- ...|++.+ -+++++++|+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~ 244 (449)
T PRK07481 165 NYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCD 244 (449)
T ss_pred ccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHH
Confidence 11233332110 0124444 344443 33467899888753 34566542 2899999999
Q ss_pred HhCCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
++|+++|+|+++. +++-.. .--...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 245 ~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~~i~~~~ 304 (449)
T PRK07481 245 RHGILLIADEVVT-GFGRTGSWFGSRGWGVKPDIMCL--AKGIT-----SGYVPLGATMVNARIADAF 304 (449)
T ss_pred HcCCEEEEeehhh-CcCcCchhhHhhhcCCCCCEEEE--eeccc-----CCCcCceEEEEcHHHHHHH
Confidence 9999999999863 221110 001123799998 48876 34 2477888888776655
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-07 Score=91.65 Aligned_cols=181 Identities=19% Similarity=0.224 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|++++..+. ..++.+||++|+++++..+|.|...+|...+++||.- ...||.+.......|.
T Consensus 94 ~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~ 173 (456)
T PRK07480 94 PPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQG 173 (456)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhccc
Confidence 566778888888875322 2456789999988999988887644443335555554 4578866443222111
Q ss_pred -----EEEEeecCCC--C--CCC--------HHHHHHHHh-ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhC
Q psy7357 105 -----SVEPVSVRKD--G--TID--------FSDLETKVK-KNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 105 -----~v~~i~~~~~--g--~iD--------~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
.+..++.+.. . ..+ ++.+++.+. ...+++++|+++.- ...|++.+ -+++++++|+++|
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g 253 (456)
T PRK07480 174 DLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYD 253 (456)
T ss_pred CCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1222332110 0 011 366666553 33467888888753 34566642 2899999999999
Q ss_pred CEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. ++..+ ...-. ...+|++++ .|.++ ||- .+|.+++++++++.+
T Consensus 254 ~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~Pi~av~~~~~i~~~~ 310 (456)
T PRK07480 254 ILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI--AKGLT-----SGYIPMGAVGVGDRVAEVL 310 (456)
T ss_pred CEEEEechhhCCCcCcchhhhhhcCCCCCeeee--ehhhc-----cCCccceEEEEcHHHHHHH
Confidence 9999999873 21111 00001 123699988 48776 342 367777787776655
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-08 Score=89.56 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
..+...+++..|++|.+-+.+-++ +|.=.|+-+.+..+... =++-+|...+.-|.+-..-.+..+++-.. +
T Consensus 214 ~s~~hv~LE~eLA~LHqK~aALlF-sSCfVANDstLftLak~------lpgcei~SD~gNHASMI~GIrns~v~K~I--F 284 (570)
T KOG1360|consen 214 HSKHHVRLEAELADLHQKEAALLF-SSCFVANDSTLFTLAKK------LPGCEIFSDEGNHASMIQGIRNSRVPKHI--F 284 (570)
T ss_pred CCchhhhHHHHHHHHhcCcceeee-eeeeeccchHHHHHHHH------CCCcEEeccccchHHHHHHhhhcCCccee--e
Confidence 334557788889999887765332 22323343444443321 24555443333332222222222322111 1
Q ss_pred CCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc------CCCCc
Q psy7357 112 RKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL------CRPGD 183 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~------~~p~~ 183 (302)
-.-|+++|++++.+..+ .++.|-++.- +-.|.+. |++||++++|++|++.++|++|..++-+- .++|-
T Consensus 285 ---rHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc-pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGv 360 (570)
T KOG1360|consen 285 ---RHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC-PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGV 360 (570)
T ss_pred ---ccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC-CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCc
Confidence 24599999999976433 3455666654 5679999 79999999999999999999987665332 11221
Q ss_pred -cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC----CCCCcccCCCCcc---hhhhHHHHhhHh---hH----H
Q psy7357 184 -YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF----LPVHPLSSIDSSI---GAVSAAHYGSAS---IL----P 248 (302)
Q Consensus 184 -~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~----lpg~~~~~~~~~l---~~~~a~~~~~~~---~~----~ 248 (302)
...||+++++.|.|+. -+|||+....+++. -+|.||..+-.+. +++.|--++--. .+ +
T Consensus 361 m~kvDiIsGTLgKafGc-------VGGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hq 433 (570)
T KOG1360|consen 361 MHKVDIISGTLGKAFGC-------VGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQ 433 (570)
T ss_pred chhhhhcccchhhhccc-------ccceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHH
Confidence 2479999988888863 24899988876654 3788875322211 233322222211 11 2
Q ss_pred HHHHHHHH-Hh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 249 ISWAYIRR-LE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 249 ~~~~y~~~-l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
++..|+++ |. .|++++-. | +|.+-+.+.+- --.+++.+.|+
T Consensus 434 rnv~~~kq~l~~~GiPVi~~-p-----SHIiPv~vgda-----~l~~~~sd~Li 476 (570)
T KOG1360|consen 434 RNVKYVKQLLMELGIPVIPN-P-----SHIIPVRVGDA-----ALAKQASDILI 476 (570)
T ss_pred HHHHHHHHHHHHcCCcccCC-C-----cceeeeeccCH-----HHHHHHHHHHH
Confidence 23357774 44 69998743 2 89988887642 12445555555
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=98.81 Aligned_cols=174 Identities=19% Similarity=0.263 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHh--CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhC-------CC
Q psy7357 34 QLIGELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMA-------GM 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~--g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~-------g~ 104 (302)
+...++.++|++++ +++. .++.+||++|+++++..++.+. ++++.|.+....||.+....... +.
T Consensus 624 ~~~~elae~L~~~~p~~~~~-v~f~~SGsEA~e~AlklAr~~t-----gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~ 697 (972)
T PRK06149 624 AAVAEFSERLAALAPDGLDT-VFLVNSGSEANDLAIRLAWAAS-----GRRDVVSVLEAYHGWTVATDAVSTSIADNPQA 697 (972)
T ss_pred HHHHHHHHHHHHhCCCCcCE-EEEeCCchHHHHHHHHHHHHhc-----CCCeEEEEeCCCCCcChhHhhhcCCccccccc
Confidence 45678889999988 4554 4567899999888888777662 23344445556788664321110 00
Q ss_pred ------EEEEeecCC--CC---CCC-----HHHHHHHHh---ccCCCeEEEEEecC-CCceecccc----HHHHHHHHHH
Q psy7357 105 ------SVEPVSVRK--DG---TID-----FSDLETKVK---KNKETLSCLMITYP-STFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 ------~v~~i~~~~--~g---~iD-----~~~l~~~i~---~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..++... .+ ..| .+++++.++ ++.+++++|+++.- ...|.+. + ++++.++|++
T Consensus 698 ~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~-~p~~yL~~l~~lc~~ 776 (972)
T PRK06149 698 LETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIA-LPPGYLQQVYAAVRA 776 (972)
T ss_pred cCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCccc-CCHHHHHHHHHHHHH
Confidence 123333221 11 112 345444443 23467888887642 4457665 4 9999999999
Q ss_pred hCCEEEEecCCcccccccCCC------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|+|+++. +++..... -...+||++. .|.++ ||-.+|.+++++++++.+.
T Consensus 777 ~g~llI~DEV~t-GfGRtG~~~~a~e~~gv~PDivt~--gK~lg-----~G~Pl~av~~~~~i~~~~~ 836 (972)
T PRK06149 777 RGGVCIADEVQV-GYGRLGHYFWGFEQQGVVPDIITM--AKGMG-----NGHPLGAVITRREIAEALE 836 (972)
T ss_pred cCCEEEEEeehh-cCCccCccchhhhhcCCCCCEEEe--ccccc-----CCeeeEEEEEcHHHHhhhc
Confidence 999999999872 33221110 0123799987 48775 2445788999988877664
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-07 Score=89.28 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++|++++. .+. .++.+|||+|+++++...|.|...+|...+.+|+. ....||.+.......|-
T Consensus 73 ~~~~~lae~L~~~~p~~~~~-v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~ 151 (443)
T PRK07483 73 EPAEALADRLVAAAPAGLEH-VYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREP 151 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccc
Confidence 455678888888874 444 45678999998899998888765444333455555 55688877554332211
Q ss_pred ------EEEEeecCCCC-CC------------CHHHHHHHHhc-cCCCeEEEEEecCC--Cceeccc---cHHHHHHHHH
Q psy7357 105 ------SVEPVSVRKDG-TI------------DFSDLETKVKK-NKETLSCLMITYPS--TFGVFEE---NITDVCELIH 159 (302)
Q Consensus 105 ------~v~~i~~~~~g-~i------------D~~~l~~~i~~-~~~~t~~V~i~~Pn--~~G~~~~---di~~I~~ia~ 159 (302)
.+..+|..... .. .++++++++.+ +.+++++|++..-- .-|.+.+ -+++++++|+
T Consensus 152 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~ 231 (443)
T PRK07483 152 FAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCD 231 (443)
T ss_pred cCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHH
Confidence 12333321100 00 13667776642 34678888887422 2365532 3899999999
Q ss_pred HhCCEEEEecCCcccccccCCCC--------ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lp 222 (302)
++|+++|+|+++. +++ +.| ...+|+++. .|.++ ||- .+|.+++++++++.+.
T Consensus 232 ~~gillI~DEV~t-GfG---RtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~Pi~av~~~~~i~~~~~ 292 (443)
T PRK07483 232 RYGVLLILDEVMC-GMG---RTGTLFACEEDGVAPDLVTI--AKGLG-----AGYQPIGAVLASDRIYDAIA 292 (443)
T ss_pred HhCCEEEEeccee-Ccc---cCcHHHHHhhcCCCCCeeee--hhhhc-----cCccccEEEEEcHHHHHHHh
Confidence 9999999999873 222 122 123799998 48876 352 4788888888776553
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=91.46 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCCC---------
Q psy7357 36 IGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAGM--------- 104 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g~--------- 104 (302)
..++.++++++++-+. ..+...+|++|+++++...+.+...++...+.+|| .....||.+.......+-
T Consensus 90 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~ 169 (427)
T TIGR00508 90 AIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYK 169 (427)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccccccccc
Confidence 4456666777765332 34567889999888888877765433322344444 445677766443332221
Q ss_pred ----EEEEeecCCC-C-----CCCHHHHHHHHhccCCCeEEEEEec--CCCceecc---ccHHHHHHHHHHhCCEEEEec
Q psy7357 105 ----SVEPVSVRKD-G-----TIDFSDLETKVKKNKETLSCLMITY--PSTFGVFE---ENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ----~v~~i~~~~~-g-----~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~---~di~~I~~ia~~~g~llivD~ 169 (302)
.+..+|.... . .-|++++++.+.++.+++++|++.. ....|... ..+++++++|+++|+++|+|+
T Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DE 249 (427)
T TIGR00508 170 GYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADE 249 (427)
T ss_pred ccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1122222111 0 1267888888876556788888774 22334421 269999999999999999999
Q ss_pred CCcccccccC---CCC--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 170 ANMNAQVGLC---RPG--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~~~~~~~~---~p~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
++ .+++... ... ...+|+++. .|.|+ || ..++.++.++++.+.+.
T Consensus 250 v~-tG~Gr~G~~~~~~~~~v~pDi~~~--gK~l~-----gG~~p~~a~~~~~~~~~~~~ 300 (427)
T TIGR00508 250 IA-TGFGRTGKLFACEHAGVVPDILCV--GKALT-----GGYMTLSATVTTDKVAQTIS 300 (427)
T ss_pred cc-cCCCcCCccchhhhcCCCCCEEEe--chhhh-----cCcccceEEEEcHHHHHHHh
Confidence 97 3332111 111 124788886 58874 45 35677888777665553
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-07 Score=91.42 Aligned_cols=181 Identities=16% Similarity=0.225 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..++.+|||+|+++++...+.+...+|...+.+|+.- ...||.+.......+
T Consensus 95 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~ 174 (466)
T PRK07036 95 APAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEF 174 (466)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccc
Confidence 455677778888764321 2456789999988888888877544443334565554 457886644332211
Q ss_pred ----CEEEEeecCC-----CCC-------CCHHHHHHHHhc-cCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhC
Q psy7357 104 ----MSVEPVSVRK-----DGT-------IDFSDLETKVKK-NKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHG 162 (302)
Q Consensus 104 ----~~v~~i~~~~-----~g~-------iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g 162 (302)
..+..+|... .+. ..++.+++.+.+ .++++++|+++.- ...|.+.++ ++++.++|+++|
T Consensus 175 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g 254 (466)
T PRK07036 175 DYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYD 254 (466)
T ss_pred cCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1133444321 011 013456666653 3467888888753 345766522 899999999999
Q ss_pred CEEEEecCCc-ccccc-cCCCC---ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANM-NAQVG-LCRPG---DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~-~~~~~-~~~p~---~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. ++..+ +.... ...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 255 ~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~--gK~l~-----gG~~Pi~av~~~~~i~~~~ 312 (466)
T PRK07036 255 ILYISDEVVTGFGRLGHFFASEAVFGIQPDIITF--AKGLT-----SGYQPLGAVIISERLLDVI 312 (466)
T ss_pred CEEEEeechhCCCcCchhhhhhhhcCCCCCEEEE--ccccc-----cCccccEEEEEcHHHHHHH
Confidence 9999999873 21211 10001 124699998 48876 35 2477788888876654
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-07 Score=88.10 Aligned_cols=167 Identities=18% Similarity=0.196 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhCCC-----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC----
Q psy7357 34 QLIGELETDLCEITGYD-----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG---- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g---- 103 (302)
+...++.+++++++.-+ ...+..+|||+|+++++...|.+ ..+++|+. ....||.+.......+
T Consensus 106 ~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~t~~~~~ 179 (464)
T PRK06938 106 PVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTA------TGRSTVLSFQGGYHGMSQGALSLMGNLGP 179 (464)
T ss_pred HHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHh------hCCCeEEEECCccCCccHHHHhhcCCccc
Confidence 34445666777765422 22222369999988888887765 33455554 4567887655433211
Q ss_pred --------CEEEEeecCCCCC------------CCHHHHHHHHhccC---CCeEEEEEecC-CCceeccc---cHHHHHH
Q psy7357 104 --------MSVEPVSVRKDGT------------IDFSDLETKVKKNK---ETLSCLMITYP-STFGVFEE---NITDVCE 156 (302)
Q Consensus 104 --------~~v~~i~~~~~g~------------iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~~---di~~I~~ 156 (302)
-.+..+|.+.... .+++.+++.+++.. +++++|++.-- ..-|++.+ -++++.+
T Consensus 180 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~ 259 (464)
T PRK06938 180 KKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRR 259 (464)
T ss_pred cccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHH
Confidence 1244555432110 13678888886422 36888887642 34466532 3899999
Q ss_pred HHHHhCCEEEEecCCcccccccCCCC--------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 157 LIHEHGGQVYLDGANMNAQVGLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 157 ia~~~g~llivD~a~~~~~~~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+|+++|+++|+|+++. +++ +.| ...+|+++. .|.++ ||-.+|.+++++++
T Consensus 260 lc~~~giLlI~DEV~t-GfG---RtG~~~a~e~~gv~PDiv~~--gKglg-----gG~PlsAv~~~~~~ 317 (464)
T PRK06938 260 ITEEAGIPLIVDEIQS-GFG---RTGKMFAFEHAGIIPDVVVL--SKAIG-----GSLPLAVVVYREWL 317 (464)
T ss_pred HHHHcCCEEEEecccc-CCC---cCcHHHHHHhcCCCCCEEEe--ecccc-----CCCceEEEeehhHh
Confidence 9999999999999863 221 112 123799998 48775 34457888888775
|
|
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-07 Score=83.93 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHH-hhcCCCCC-EEEEc-CCCCcccHHHH---------HhC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQ-AQDAHHRN-VCLIP-VSAHGTNPASA---------QMA 102 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~-~~g~~~~d-~Vlv~-~~~hg~~~~~~---------~~~ 102 (302)
..-++.+.+.++||.+.+ +.++.|++|.+.++..+|.|.- ..+..+.. +|+.. +..||...... +..
T Consensus 102 ~~~~f~~~vt~lf~~~kv-lpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~f 180 (427)
T KOG1402|consen 102 VLGEFAEYVTKLFGYDKV-LPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGF 180 (427)
T ss_pred hHHHHHHHHHHhcCccee-eecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhcc
Confidence 456777889999998875 4578899887788888886532 22211122 33333 34666543321 111
Q ss_pred C----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 103 G----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 103 g----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
| ..+..||+ -|.++|+.++++ ++.+++++.-- ..-|++.|| +++++++|.+|+.++|.|+.|. +
T Consensus 181 gp~~P~~~~~v~Y-----~d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQT-G 252 (427)
T KOG1402|consen 181 GPFLPGVVDKVPY-----GDAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQT-G 252 (427)
T ss_pred CCCCCCcceeecc-----CCHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhh-c
Confidence 1 12444554 389999999984 77888777642 367887433 8999999999999999999873 2
Q ss_pred ccccCCCCc--------cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCC-CCCCCc
Q psy7357 175 QVGLCRPGD--------YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAP-FLPVHP 225 (302)
Q Consensus 175 ~~~~~~p~~--------~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~-~lpg~~ 225 (302)
+ .+.|. ...|++.. .|.|+ ||- .+..++++++++- .=||..
T Consensus 253 l---~RTGk~la~d~env~PDivil--gKalS-----GG~~Pvsavl~~~~im~~~~pgeH 303 (427)
T KOG1402|consen 253 L---ARTGKLLACDYENVRPDIVIL--GKALS-----GGVYPVSAVLADDDIMLNIKPGEH 303 (427)
T ss_pred c---cccCcEEEeehhhcCCCeEEE--ecccc-----CCeeeeEEEEecHHHHhccCCCcc
Confidence 2 22332 34799998 59887 453 3444555555544 335543
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-07 Score=87.74 Aligned_cols=171 Identities=17% Similarity=0.240 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhCCC----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-----
Q psy7357 34 QLIGELETDLCEITGYD----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG----- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g----- 103 (302)
+...++.+++++++... ...+..+|||+|+++++...|.+ +.+++|+. ....||.+.......+
T Consensus 101 ~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~------tgr~~Ii~~~~~yHG~t~~als~t~~~~~~ 174 (459)
T PRK06931 101 PLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTY------TGRSNVISFSGGYHGMTHGALAVTGNLSPK 174 (459)
T ss_pred HHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCcccc
Confidence 45567888888887532 12344579999988888888876 34555554 4567887755442111
Q ss_pred -------CEEEEeecCCCC--------CCCHHHH----HHHHhc---cCCCeEEEEEecC-CCceeccc---cHHHHHHH
Q psy7357 104 -------MSVEPVSVRKDG--------TIDFSDL----ETKVKK---NKETLSCLMITYP-STFGVFEE---NITDVCEL 157 (302)
Q Consensus 104 -------~~v~~i~~~~~g--------~iD~~~l----~~~i~~---~~~~t~~V~i~~P-n~~G~~~~---di~~I~~i 157 (302)
-.+..+|..... .-|.+.+ ++.+++ ..+++++|++.-- ...|++.+ -++++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~l 254 (459)
T PRK06931 175 NAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREV 254 (459)
T ss_pred cCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHH
Confidence 123444442110 1123333 333331 2246888888642 34465532 38999999
Q ss_pred HHHhCCEEEEecCCc-ccccc-cCC--CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 158 IHEHGGQVYLDGANM-NAQVG-LCR--PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 158 a~~~g~llivD~a~~-~~~~~-~~~--p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
|+++|+++|+|+++. ++..+ +.. --...+|+++. .|.++ ||-.+|.++.++++
T Consensus 255 c~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~--gK~l~-----gG~Pi~av~~~~~~ 311 (459)
T PRK06931 255 TQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVM--SKAVG-----GGLPLAVLGIKKEF 311 (459)
T ss_pred HHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEe--ccccc-----CCcceeeeeeHHHH
Confidence 999999999999863 21111 000 01124799998 48876 34446777777654
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-08 Score=88.76 Aligned_cols=188 Identities=17% Similarity=0.290 Sum_probs=115.6
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcc
Q psy7357 18 TNMHPFIPQDQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGT 94 (302)
Q Consensus 18 t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~ 94 (302)
.+...|.. +||...+++.+..++.+-+|.+. .|+..+.||+..+ ...+..+...+.....++|+.| .|+|-.
T Consensus 65 e~~cnY~~---pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~f--FYlfNlF~G~~sdG~~k~illPLaPeYiG 139 (417)
T COG3977 65 EALCNYDG---PQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAF--FYLFNLFAGRRSDGTEKKILLPLAPEYIG 139 (417)
T ss_pred HHHhcCCC---CcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchH--HHHHHHhcCccCCCcceeEeeccChhhcc
Confidence 34455644 79999999999999999999764 5888889997431 1111111111111223466666 344433
Q ss_pred cHHHHH------hCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCE
Q psy7357 95 NPASAQ------MAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQ 164 (302)
Q Consensus 95 ~~~~~~------~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~l 164 (302)
|....- ...=++..+|... ...+|.++|. +. +++.+|+++-| |+||.+ ++++.++.++|++||+.
T Consensus 140 Y~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~---e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giP 214 (417)
T COG3977 140 YADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IG---ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIP 214 (417)
T ss_pred ccccccCccceeeccCCcccccccceeeccCHHHcc--cc---cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCc
Confidence 322110 0011122122100 2368888874 33 78999999988 799976 33689999999999999
Q ss_pred EEEecCCccccccc----CCCCccCCcE-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 165 VYLDGANMNAQVGL----CRPGDYGSDV-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 165 livD~a~~~~~~~~----~~p~~~gaDi-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|.|+...+.++ .+| -|+.++ .|.|++| ++.| |-|.|++.++++++..+
T Consensus 215 liIDnAYg~PFP~iifsd~~~-~w~~NiilC~SLSK-~GLP----G~R~GIiIane~viqai 270 (417)
T COG3977 215 LIIDNAYGVPFPGIIFSDATP-LWNENIILCMSLSK-LGLP----GSRCGIIIANEKVIQAI 270 (417)
T ss_pred EEEecccCCCCCceecccccc-cCCCCEEEEeehhh-cCCC----CcceeEEEccHHHHHHH
Confidence 99999875443332 112 355564 5566666 4444 77999999998765543
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.7e-07 Score=86.95 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC---------------------CCCEEEE-cC
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH---------------------HRNVCLI-PV 89 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~---------------------~~d~Vlv-~~ 89 (302)
++.+++.+++++++. ++. .++.+|||+|+++++..++.|....++. ++.+||. ..
T Consensus 105 ~la~~l~~~l~~~~p~~~~~-v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~ 183 (464)
T TIGR00699 105 DWAKILKEGILKVAPKGQDQ-VWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKG 183 (464)
T ss_pred HHHHHHHHhHHhhCCCCcCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECC
Confidence 344444444455653 333 4567899999889988887765322100 1224554 45
Q ss_pred CCCcccHHHHHhCC-----------CEEEEeecCCC----C----------CCCHHHHHHHHhccCCCeEEEEEecC-CC
Q psy7357 90 SAHGTNPASAQMAG-----------MSVEPVSVRKD----G----------TIDFSDLETKVKKNKETLSCLMITYP-ST 143 (302)
Q Consensus 90 ~~hg~~~~~~~~~g-----------~~v~~i~~~~~----g----------~iD~~~l~~~i~~~~~~t~~V~i~~P-n~ 143 (302)
..||.+.......+ ..+..+|.... + .-++++++++++++.+++++|+++.- ..
T Consensus 184 syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~ 263 (464)
T TIGR00699 184 AFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSE 263 (464)
T ss_pred CcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCC
Confidence 57887765443222 11223333210 0 12467788888766678999988753 34
Q ss_pred ceecccc----HHHHHHHHHHhCCEEEEecCCcccccccCCC---Ccc----CCcEEEeCCCcccC
Q psy7357 144 FGVFEEN----ITDVCELIHEHGGQVYLDGANMNAQVGLCRP---GDY----GSDVSHLNLHKTFC 198 (302)
Q Consensus 144 ~G~~~~d----i~~I~~ia~~~g~llivD~a~~~~~~~~~~p---~~~----gaDiv~~~~hK~l~ 198 (302)
.|.+. + +++++++|+++|+++|+|+++ .+++..... ..+ .+|+++. .|.++
T Consensus 264 ~G~~~-~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg 325 (464)
T TIGR00699 264 GGDNH-ASPDFFRKLRDITKKHNVAFIVDEVQ-TGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQ 325 (464)
T ss_pred CCCcC-CCHHHHHHHHHHHHHcCCEEEEeeee-eCCCCCcchhHHHhcCCCCCCCEEEe--hhhhc
Confidence 57665 4 999999999999999999987 333211100 011 2799888 48774
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=91.28 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=97.6
Q ss_pred HHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc--CCCCcccHHHH----HhCCCE-----
Q psy7357 38 ELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP--VSAHGTNPASA----QMAGMS----- 105 (302)
Q Consensus 38 e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~--~~~hg~~~~~~----~~~g~~----- 105 (302)
++.++|++++. .+. .++.+||++|+++++...|.| ..+.+|+.. ...|+.+..+. ...+..
T Consensus 92 ~la~~l~~~~p~~~~-v~f~~sGseA~e~AlklAr~~------tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~ 164 (431)
T PRK06209 92 DAAESFLELIDGADM-VKFCKNGSDATSAAVRLARAY------TGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSA 164 (431)
T ss_pred HHHHHHHHhCCccce-EEEecCHHHHHHHHHHHHHHH------hCCCeEEEeccCccccccccccccCCCCCCCChhHhc
Confidence 66778888774 333 456889999988998888876 345565554 23333111110 000110
Q ss_pred -EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceecc--ccHHHHHHHHHHhCCEEEEecCCcccccccC--C
Q psy7357 106 -VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGLC--R 180 (302)
Q Consensus 106 -v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~~--~ 180 (302)
+..++ .-|+++++++++++.+++++|++.. - .|... ..+++|.++|+++|+++|+|+++ .+..... .
T Consensus 165 ~~~~~~-----~~d~~~l~~~l~~~~~~~aavi~Ep-v-~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~ 236 (431)
T PRK06209 165 LTVTFR-----YNDIASLEALFEDHPGRIACVILEP-A-TADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGA 236 (431)
T ss_pred cccccC-----CCCHHHHHHHHHhCCCCEEEEEEcc-c-cCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchh
Confidence 11111 2389999999976555777777753 2 23321 14999999999999999999987 3332110 0
Q ss_pred C--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 181 P--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 181 p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
. -...+|+++. .|.++ ||-.+|.+++++++++.
T Consensus 237 ~~~~gv~PDi~t~--gK~lg-----gG~p~~av~~~~~i~~~ 271 (431)
T PRK06209 237 QKLYGIVPDLSCF--GKALG-----NGFAVSALAGKREYMEL 271 (431)
T ss_pred hHHhCCCcceeee--hhhhc-----CCcccEEEEEHHHHHhh
Confidence 0 0123688777 58776 24447788888776654
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-08 Score=88.85 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
+.+.++.+.|.+++--+. +.++.+||++|++.+++.++.|. +.-|.|-..+..||.....+...+.....-+++
T Consensus 92 ~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt-----~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~ 166 (442)
T KOG1404|consen 92 PPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYT-----GNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFP 166 (442)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhc-----CCceEEEeeccccCCchhhcccccCCcccccCC
Confidence 456777887777765443 46678999999889998888884 345666667778887776554333322222111
Q ss_pred -------------C-CC----C-----CC--HHHHHHHHhccCCCeEEEEEecC--CCceeccc---cHHHHHHHHHHhC
Q psy7357 113 -------------K-DG----T-----ID--FSDLETKVKKNKETLSCLMITYP--STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 113 -------------~-~g----~-----iD--~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~~g 162 (302)
+ .+ . .| .+++++.+....+.+.+-++..| ..-|++++ -+++..++|+++|
T Consensus 167 ~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~G 246 (442)
T KOG1404|consen 167 GVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRG 246 (442)
T ss_pred CCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcC
Confidence 0 01 0 11 24455555433344444455443 35677763 3899999999999
Q ss_pred CEEEEecCCcccccccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 163 GQVYLDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
.++|.|+++. +++.... --..-.||++.. |+++. |-.+|.+++.++++..+..+.
T Consensus 247 gl~IaDEVqt-GfGRtG~~wgfe~h~v~PDIvTmA--KgiGn-----G~Pl~AVvtt~EIa~v~~~~~ 306 (442)
T KOG1404|consen 247 GLFIADEVQT-GFGRTGHMWGFESHGVVPDIVTMA--KGIGN-----GFPLGAVVTTPEIADVLNQKS 306 (442)
T ss_pred CEEEehhhhh-ccccccccccccccCCCccHHHHH--hhccC-----CCcceeeecCHHHHHHHHhcc
Confidence 9999999873 2221111 011125898884 88873 467888888888877765554
|
|
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.6e-08 Score=88.90 Aligned_cols=138 Identities=19% Similarity=0.265 Sum_probs=107.5
Q ss_pred cccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 27 DQARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
..|||..-.++...+.+.+.=|. +..+++.++||. |. ..++.+. . ..+++-|++|-|-|+-|.+.....|
T Consensus 110 S~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai-~~il~l~--~----~~~~~GvliPiPQYPLYsAti~l~~ 182 (475)
T KOG0258|consen 110 SDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAI-RSILSLL--I----AGKKTGVLIPIPQYPLYSATISLLG 182 (475)
T ss_pred ccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHH-HHHHHHH--h----cCCCCceEeecCCCchhHHHHHHhC
Confidence 44999988888888888888774 335778888874 33 2233322 1 1467889999999998888888889
Q ss_pred CEEEEeecCC--CCCCCHHHHHHHHhccCC--CeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 104 MSVEPVSVRK--DGTIDFSDLETKVKKNKE--TLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 104 ~~v~~i~~~~--~g~iD~~~l~~~i~~~~~--~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
...+.+-+|+ +..+|.++|++.+++.++ +++++++-|| |+||.+ ++++++|..+|++.|..++.|.++
T Consensus 183 ~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVY 257 (475)
T KOG0258|consen 183 GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVY 257 (475)
T ss_pred CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHH
Confidence 8888888876 468999999999986543 5678888888 899976 348999999999999999999874
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=85.08 Aligned_cols=193 Identities=20% Similarity=0.154 Sum_probs=133.5
Q ss_pred cccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCee--eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE
Q psy7357 10 IPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKI--SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI 87 (302)
Q Consensus 10 ~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv 87 (302)
+-.+...|+..+-|.-.+.- ++.+++-.++.||.+.+ ..+..||+.|.-+++..++ +++|+++.
T Consensus 47 ~rvs~~hf~~stGYGydD~G------RdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~L--------RpgDell~ 112 (416)
T COG4100 47 HRVSESHFTGSTGYGYDDLG------RDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGIL--------RPGDELLY 112 (416)
T ss_pred cccchhccCCCCCCCccccc------hhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhcc--------CCCCeEEE
Confidence 34556677777777653332 44566678899999864 5677799988766666655 68888653
Q ss_pred c-CCCCcccHH----------HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-----CceeccccH
Q psy7357 88 P-VSAHGTNPA----------SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-----TFGVFEENI 151 (302)
Q Consensus 88 ~-~~~hg~~~~----------~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-----~~G~~~~di 151 (302)
- ...|-+-.. +.+..|++..-+|+..+|.+|.+.+++.++ ++|++|-++-.. +.=.+. +|
T Consensus 113 i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~---~~tkli~IQRS~GY~~RpS~~I~-eI 188 (416)
T COG4100 113 ITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS---DRTKLIGIQRSKGYAWRPSLSIA-EI 188 (416)
T ss_pred ecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcC---ccceEEEEEeccCcCCCCcccHH-HH
Confidence 2 222322221 345667888889998899999999999999 999999998532 111345 68
Q ss_pred HHHHHHHHHh--CCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCC--cceeEEEeCCCCCCCCCCcc
Q psy7357 152 TDVCELIHEH--GGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGP--GMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 152 ~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp--~~G~l~~~~~l~~~lpg~~~ 226 (302)
+++.+++++. +.+++||..+-. +..-..|-+.|+|++.+|+=|--+ ||- -.|+++.++++++...-|+.
T Consensus 189 ~~~i~~vk~inpn~ivFVDNCYGE-FvE~~EPt~vGaDliAGSLIKNpG-----GgiaktGGYiaGk~~~ve~~~yRlT 261 (416)
T COG4100 189 EEMITFVKEINPNVIVFVDNCYGE-FVEEKEPTHVGADLIAGSLIKNPG-----GGIAKTGGYIAGKAELVEAAAYRLT 261 (416)
T ss_pred HHHHHHHHhcCCCEEEEEeccchh-hhhccCccccchhhhccceeeCCC-----CceeeccceeechHHHHHhhceeee
Confidence 8888888875 678889965421 112245788899999998777332 332 57999999999887765554
|
|
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-08 Score=91.37 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=119.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
-|+.+...|+++..++++|.+.+ .++++-++ +.+.+-++. .++.-|+..+..|.+...-++..|+.++.
T Consensus 178 ~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~T--Ns~~~p~l~--------~~gsLIiSDelNHaSi~~GaRLSgAtiRV 247 (519)
T KOG1357|consen 178 AGTTEEHKELEELVARFLGVEDAIVFSMGFAT--NSMNIPSLL--------GKGSLIISDELNHASLITGARLSGATTRV 247 (519)
T ss_pred cccHHHHHHHHHHHHHhcCCcceEEEeccccc--cccCcceee--------cCCcceeeccccchheeccccccCceEEE
Confidence 58889999999999999999876 44444444 312222333 57777676667777776677888998888
Q ss_pred eecCCCCCCCHHHHHHHHhcc----CCCe-----EEEEEec-C-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKN----KETL-----SCLMITY-P-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~----~~~t-----~~V~i~~-P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
..-+ |+.+||+.|++. .|+| +.+++.. - +--|.+. +++++.++.+++.+++++|+||.++..+
T Consensus 248 fkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv-~Lp~vvalkkkykayl~lDEAHSiGA~g 321 (519)
T KOG1357|consen 248 FRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIV-DLPEVVALKKKYKAYLYLDEAHSIGAMG 321 (519)
T ss_pred EecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeec-ccHHHHHhhccccEEEEeeccccccccC
Confidence 8763 677777777532 2333 2333333 1 2357888 8999999999999999999999765542
Q ss_pred c--------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 L--------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~--------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
- ..++...+||+.+.+.|+|+ ..+|+++.++++++.+.
T Consensus 322 ~tGrgvce~~g~d~~dvDImMGtftKSfg-------a~GGyiagsk~lid~lr 367 (519)
T KOG1357|consen 322 ATGRGVCEYFGVDPEDVDIMMGTFTKSFG-------AAGGYIAGSKELIDYLR 367 (519)
T ss_pred CCCcceeeccCCCchhheeecceehhhcc-------cccceecCcHHHHhhhc
Confidence 1 12233457999998888775 45689999988877663
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-07 Score=86.10 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=94.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
++|..+++..+.+.....+..+. -.+..++|. .+.+-+++.+. +++|.|++-...|.+-....+..|+
T Consensus 99 s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~--------N~gd~vlie~~ty~~AL~s~~a~gv 170 (472)
T KOG0634|consen 99 SSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI--------NRGDHVLIEEYTYPSALQSMEALGV 170 (472)
T ss_pred ccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh--------cCCCceEEecccchHHHHhccccCc
Confidence 78888888887775554455443 145556665 55556666554 7899999998876655566778898
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCC------CeEEEEEecC---CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKE------TLSCLMITYP---STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~------~t~~V~i~~P---n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
+++.|+.|.+| +|+|.|++.++..++ +.. |+-+-| |+||.- .+--++|.++|++|+.++|-|..+
T Consensus 171 ~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~-vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpY 246 (472)
T KOG0634|consen 171 KIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPH-VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPY 246 (472)
T ss_pred eEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCe-EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCcc
Confidence 88888887666 799999999975432 233 444434 688864 224689999999999999988765
|
|
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-06 Score=81.83 Aligned_cols=177 Identities=18% Similarity=0.266 Sum_probs=113.5
Q ss_pred HHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCC-EEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 38 ELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRN-VCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 38 e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d-~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
++.+.+.+..+ .+. .++.+||++|+++++...|.+.......+.. .|-+-+..||.....+...+..-...|.++
T Consensus 102 ~l~~~l~~~~~~~~~~r-vff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p 180 (433)
T KOG1401|consen 102 ELEEVLSAVLGKGSAER-VFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDP 180 (433)
T ss_pred HHHHHHHhcccCCCccE-EEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCC
Confidence 34445555552 233 4568899999889988777653211101122 444556678866665554444444444432
Q ss_pred ---C---C-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccccccCCC-
Q psy7357 114 ---D---G-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQVGLCRP- 181 (302)
Q Consensus 114 ---~---g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~~~~~p- 181 (302)
+ . .-|+.++++.++.|++++++|+++-- ..-|++.. -+..+.++|+++|++||+|+++. +++.+..-
T Consensus 181 ~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t-G~gR~g~~~ 259 (433)
T KOG1401|consen 181 IAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT-GLGRLGYGW 259 (433)
T ss_pred CCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh-CccccchHH
Confidence 1 1 35899999999998888999998753 25566622 47889999999999999999863 22211000
Q ss_pred --C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 182 --G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 --~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
. ..-+||.+. .|.|+ ||-.+|...++++.++.+.+
T Consensus 260 a~e~~~~~PDI~t~--aK~L~-----gGlPigA~~v~~kV~~~i~~ 298 (433)
T KOG1401|consen 260 AQEYFGVTPDITTV--AKPLG-----GGLPIGATGVRDKVAEMISP 298 (433)
T ss_pred HHHHhCcCCcceee--hhhcc-----CCceeEEEeehHHHHhhcCC
Confidence 0 123699887 47665 45789999999988887743
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=92.15 Aligned_cols=176 Identities=17% Similarity=0.205 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..++.+|||+|+++++...|.+ ..+++||. ....||.+.......+
T Consensus 663 ~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~------tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~ 736 (1013)
T PRK06148 663 DAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAH------TGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGG 736 (1013)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEEcCCccCCCcchhhcCchhhcccCC
Confidence 445677888888875321 2456789999988888888866 33444444 4567886643322111
Q ss_pred ----CEEEEeecCC--CCC---CC-------HHHHHHHHh---ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHH
Q psy7357 104 ----MSVEPVSVRK--DGT---ID-------FSDLETKVK---KNKETLSCLMITYP-STFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 ----~~v~~i~~~~--~g~---iD-------~~~l~~~i~---~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~ 160 (302)
-.+..++... .+. .| .+.+++.++ .+.+++++|+++.- ..-|.+.+ -++++.++|++
T Consensus 737 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~ 816 (1013)
T PRK06148 737 KGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRA 816 (1013)
T ss_pred CCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH
Confidence 1122222110 000 11 244555553 33457888887742 34566541 38999999999
Q ss_pred hCCEEEEecCCc-ccccc--cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVG--LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~--~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|+|+++. ++..+ +.... ...+||++. .|.++ ||-.+|.+++++++++.+.
T Consensus 817 ~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lg-----gG~Plgav~~~~ei~~~~~ 876 (1013)
T PRK06148 817 AGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIG-----NGHPMGAVVTTREIADSFD 876 (1013)
T ss_pred hCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--ccccc-----CCcceEEEEEcHHHHhhcc
Confidence 999999999873 22111 10001 123799998 58776 3445888888988877653
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-08 Score=90.52 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 37 GELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..+...+-++.|+.. +.+.|..+......++++++. + .+.+.|+.+...|-+-..++...|++++.||...
T Consensus 59 n~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~----r--~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~ 132 (389)
T PF05889_consen 59 NSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRM----R--PKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVL 132 (389)
T ss_dssp HHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHH----H--CT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEE
T ss_pred HHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHhc----c--cCCceEEEeeccccchHHHHHhcCCeEEEeeccC
Confidence 333344455678752 456666555444344555541 1 4678999999988766667888999999999532
Q ss_pred --CC-CCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccc---c-ccCCCCcc-
Q psy7357 114 --DG-TIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQ---V-GLCRPGDY- 184 (302)
Q Consensus 114 --~g-~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~---~-~~~~p~~~- 184 (302)
|. ..|++.+++.+++.+++..+.++++++ +.+...+|+++|+++|+++|+..++-+|+.+-- . .+......
T Consensus 133 ~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~G 212 (389)
T PF05889_consen 133 EGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVG 212 (389)
T ss_dssp ETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHS
T ss_pred CCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcC
Confidence 22 568999999998766777777888876 778887459999999999999999999874300 0 00000011
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeC-C----CCCCCCCCcc
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-H----LAPFLPVHPL 226 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~----l~~~lpg~~~ 226 (302)
..|+++-++.|-|-.|. |.+.++... . +.+.-|||..
T Consensus 213 Rvda~vqS~dkNF~VPv-----Ggai~As~~~~~i~~vs~~YpGRas 254 (389)
T PF05889_consen 213 RVDAFVQSTDKNFMVPV-----GGAIMASFDPSGILAVSKEYPGRAS 254 (389)
T ss_dssp TCSEEEEEHHHHHCEES-----SHEEEEESSHHHHHHHHHTSHSHBT
T ss_pred CcceeeeecCCCEEecC-----CCcEEEecCHHHHHHHHHHhhhhhh
Confidence 25777777788887763 445666553 2 3344577765
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=84.13 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
-|+..+...++.+++++.+-+.+.+.+. +=.|+.+++-++. ++.|-|+..+.-|.+...-.+.+.
T Consensus 108 cGtq~iHk~LE~kiAqfh~rED~ilyps-cfdANag~feail--------~pedAvfSDeLNhASIIdGirLck------ 172 (417)
T KOG1359|consen 108 CGTQDIHKLLESKIAQFHGREDTILYPS-CFDANAGAFEAIL--------TPEDAVFSDELNHASIIDGIRLCK------ 172 (417)
T ss_pred ecchHHHHHHHHHHHHHhCCCceEEecc-ccccchHHHHHhc--------ChhhhhhccccccchhhhhhHHHh------
Confidence 4666677888888888888777655543 4344534444544 566665555555544333222111
Q ss_pred ecCCCCCCCHHHHHHHHhcc-CCCeEEEEEecC--CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC---CCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKN-KETLSCLMITYP--STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC---RPGD 183 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~-~~~t~~V~i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~---~p~~ 183 (302)
..+.+|+-+++..+.+. +-+.+ ++++.. +-.|-+. |+++|.++++++|+++++|.+|..+..+.. ....
T Consensus 173 ---ry~h~dv~~l~~~l~~a~k~r~k-lv~TDg~FSMDGdia-Pl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~ 247 (417)
T KOG1359|consen 173 ---RYRHVDVFDLEHCLISACKMRLK-LVVTDGVFSMDGDIA-PLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEE 247 (417)
T ss_pred ---hhccchhHHHHHHHHHhhhheEE-EEEecceeccCCCcc-cHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHH
Confidence 23567888888776532 22333 445543 3457777 699999999999999999999865544321 1112
Q ss_pred c----CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 Y----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+ .+|++..+++|.++ |-..||..++++++..+
T Consensus 248 ~~vm~~vdiinsTLgKAlG------ga~GGyttgp~~li~ll 283 (417)
T KOG1359|consen 248 FGVMGDVDIINSTLGKALG------GASGGYTTGPKPLISLL 283 (417)
T ss_pred hCCCCcceehhhhhhhhhc------CCCCCCccCChhHHHHH
Confidence 2 36788877777665 56678998888776554
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-06 Score=81.24 Aligned_cols=160 Identities=10% Similarity=0.093 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHh---CCCeeeEeeCchHHHHHHHHHHHHHHHHh----hcCCC--CCEEEEcC-CCCcccHHHHHhCC
Q psy7357 34 QLIGELETDLCEIT---GYDKISFQPNSGAQGEYAGLRAIQCYHQA----QDAHH--RNVCLIPV-SAHGTNPASAQMAG 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~---g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~----~g~~~--~d~Vlv~~-~~hg~~~~~~~~~g 103 (302)
+...++.+++++++ +++. .++.+|||+|+++++...+.|... +|..+ +.+|+..+ ..||.+.......|
T Consensus 85 ~~~~~l~~~l~~~~~~~~~~~-v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~ 163 (431)
T TIGR03251 85 VAMARFVDTFARVLGDPALPH-LFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTN 163 (431)
T ss_pred HHHHHHHHHHHHhcCCCCcCE-EEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccC
Confidence 34456666677765 2343 456789999988999988877311 22111 34555544 57887655443222
Q ss_pred CE-------E----EEe--e-----cCCCC--------CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHH
Q psy7357 104 MS-------V----EPV--S-----VRKDG--------TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITD 153 (302)
Q Consensus 104 ~~-------v----~~i--~-----~~~~g--------~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~ 153 (302)
-. . ..+ | .+.+. .-+++++++.++++.+++++|+++-- ...|.+. ..+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~ 243 (431)
T TIGR03251 164 TDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRA 243 (431)
T ss_pred CccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHH
Confidence 10 0 001 1 11000 02356677788766678999998752 3456652 25899
Q ss_pred HHHHHHHhCCEEEEecCCcccccccCC-----CCccCCcEEEeCCCccc
Q psy7357 154 VCELIHEHGGQVYLDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTF 197 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l 197 (302)
|+++|+++|+++|+|+++. +++.... --...+|+++. .|.+
T Consensus 244 l~~lc~~~g~llI~DEV~t-G~GrtG~~~a~~~~gv~PDi~~~--gK~~ 289 (431)
T TIGR03251 244 MRALCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVQPDIVAF--GKKT 289 (431)
T ss_pred HHHHHHHcCCEEEEecchh-ccCccchHHHHHhcCCCCCEEEe--cccC
Confidence 9999999999999999874 2221100 01234799987 4754
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=80.01 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=108.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--------eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--------ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--------~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~ 100 (302)
-.|...+.+++++. +||.+. +.++.-+|+.|. .. +. .++... .+...|.+|+|.++.|....+
T Consensus 68 i~G~~~f~~~~~~l---lFG~d~~~l~~~Rv~t~Qt~GGTGAL-~~--~A-~fl~~~--~~~~~vwis~PtW~NH~~If~ 138 (396)
T COG1448 68 IEGLPEFLEAVQKL---LFGADSPALAEDRVATVQTLGGTGAL-RV--AA-DFLARF--FPDATVWISDPTWPNHKAIFE 138 (396)
T ss_pred cCCcHHHHHHHHHH---hcCCCcHHHHhhhHhheecCCcchHH-HH--HH-HHHHHh--CCCceEEeCCCCcHhHHHHHH
Confidence 45766666655543 367441 366666666543 11 11 111111 456779999999999999999
Q ss_pred hCCCEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEec--CCCceec--cccHHHHHHHHHHhCCEEEEecCCc-c
Q psy7357 101 MAGMSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITY--PSTFGVF--EENITDVCELIHEHGGQVYLDGANM-N 173 (302)
Q Consensus 101 ~~g~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~ 173 (302)
..|++|.++|+ |. +..+|.+.+.+.|.+.+++. .|++.. -||||+= .+..++|.++.++.|.+.++|-|+- .
T Consensus 139 ~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~-vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF 217 (396)
T COG1448 139 AAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGS-VVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGF 217 (396)
T ss_pred hcCCceeeeeccccccccccHHHHHHHHHhCCCCC-EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhh
Confidence 99999999997 33 44699999999998654443 333332 2899964 2268999999999999999998752 2
Q ss_pred cccccCCC------CccCCc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 174 AQVGLCRP------GDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 174 ~~~~~~~p------~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+-+.-.+. ...+.- +|+.|..|.| |+-|-|+|.+.+-
T Consensus 218 ~~GleeDa~~lR~~a~~~~~~lva~S~SKnf----gLYgERVGa~~vv 261 (396)
T COG1448 218 ADGLEEDAYALRLFAEVGPELLVASSFSKNF----GLYGERVGALSVV 261 (396)
T ss_pred ccchHHHHHHHHHHHHhCCcEEEEehhhhhh----hhhhhccceeEEE
Confidence 22211100 011233 4444455555 4668898887764
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.2e-06 Score=76.35 Aligned_cols=237 Identities=18% Similarity=0.190 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHH-HHHHHHHhhcCCCCCEEEEcCCCCc-ccHHHHHhCCCEEEEeec
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLR-AIQCYHQAQDAHHRNVCLIPVSAHG-TNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~-a~~~~~~~~g~~~~d~Vlv~~~~hg-~~~~~~~~~g~~v~~i~~ 111 (302)
...+.+++.+++.||.+... -+.-|-.|| ..+. .++. .....++.+.+++...|- +.....+..|..++.+++
T Consensus 79 rs~~~L~~avkdifGfq~~i-PthQGRgAE-~Il~~i~ik---~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~ 153 (471)
T COG3033 79 RSYYALADAVKDIFGFQYTI-PTHQGRGAE-NILIPILIK---KGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYV 153 (471)
T ss_pred ccHHHHHHHHHHhcCceeee-eccCCccHH-HHHHHHHhh---hccccCCccccccccceecchhHHHHhcCCccccccc
Confidence 35678899999999987642 233343444 2232 2221 111245667666666664 344566778888888876
Q ss_pred CC----------CCCCCHHHHHHHHhccCC-CeEEEE--EecCCCcee---ccccHHHHHHHHHHhCCEEEEecCCc--c
Q psy7357 112 RK----------DGTIDFSDLETKVKKNKE-TLSCLM--ITYPSTFGV---FEENITDVCELIHEHGGQVYLDGANM--N 173 (302)
Q Consensus 112 ~~----------~g~iD~~~l~~~i~~~~~-~t~~V~--i~~Pn~~G~---~~~di~~I~~ia~~~g~llivD~a~~--~ 173 (302)
++ .|.+|++.|++.|++-.. ++..|+ +++-+-.|. +. +++++.+||+++++.|++|++-. +
T Consensus 154 ~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~-n~r~v~~ia~ky~ipvv~Da~RfaEN 232 (471)
T COG3033 154 DEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMA-NMKAVYEIAKKYDIPVVMDAARFAEN 232 (471)
T ss_pred cccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHH-hHHHHHHHHHHcCCcEEeehhhhhhh
Confidence 53 367999999999986543 344444 344123332 34 79999999999999999998743 1
Q ss_pred ccccc-CCCC--cc-----------CCcEEEeCCCcccCCCCCCCCCcceeEEEeCC----CCCCCCCCcccC-------
Q psy7357 174 AQVGL-CRPG--DY-----------GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH----LAPFLPVHPLSS------- 228 (302)
Q Consensus 174 ~~~~~-~~p~--~~-----------gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~----l~~~lpg~~~~~------- 228 (302)
+...- ..|+ +| -+|-++.|.-|---. +-+|+++.+++ +-..+..+.+-+
T Consensus 233 aYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lv------nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYG 306 (471)
T COG3033 233 AYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLV------NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYG 306 (471)
T ss_pred hhhhhhcCcccccccHHHHHHHHHhhhhhheeecccccee------ccccEEEecCccHHHHHHHHHhheEeeccccccC
Confidence 22111 1122 11 268888886664332 34589999976 334444333321
Q ss_pred --CCCcchhhhHHHHhhHh---hHHH-HH-HHHH-HHh-cccccccccCCCcceeEEEEEEecccccc
Q psy7357 229 --IDSSIGAVSAAHYGSAS---ILPI-SW-AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKS 287 (302)
Q Consensus 229 --~~~~l~~~~a~~~~~~~---~~~~-~~-~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~ 287 (302)
+...+.++|...+-+.. +..+ +. .|+. .|+ .|++++ .+.. -|-+-||...+..+
T Consensus 307 gl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~GVpi~-~paG----GHavfvda~~~lph 369 (471)
T COG3033 307 GLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEAGVPIV-QPAG----GHAVFVDAGKFLPH 369 (471)
T ss_pred cccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCeeE-ecCC----CceEEeehhhhcCC
Confidence 23345566655555432 1111 11 5655 666 588864 4455 78898997765444
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.2e-06 Score=79.53 Aligned_cols=160 Identities=12% Similarity=0.118 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHh----hcC--CCCCEEEEc-CCCCcccHHHHHhCC
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQA----QDA--HHRNVCLIP-VSAHGTNPASAQMAG 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~----~g~--~~~d~Vlv~-~~~hg~~~~~~~~~g 103 (302)
+...++.++++++++ ++. .++.+|||+|+++++..++.|... +|. ..+.+||.- ...||.+.......+
T Consensus 92 ~~~~~la~~l~~~~~p~~~~~-v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 92 VEMARFVDTFARVLGDPELPH-LFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred HHHHHHHHHHHhhcCCCCCCE-EEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcC
Confidence 445567777877762 333 456889999988999888876421 231 123555544 467887655443322
Q ss_pred C--------EE---EEeecC-----CCC-C---------CCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHH
Q psy7357 104 M--------SV---EPVSVR-----KDG-T---------IDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITD 153 (302)
Q Consensus 104 ~--------~v---~~i~~~-----~~g-~---------iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~ 153 (302)
. .. ..+|.. ..+ . -|++++++.+.++.+++++|++.-- ..-|.+. ..+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~ 250 (443)
T PRK08297 171 TDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAA 250 (443)
T ss_pred CcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHH
Confidence 1 00 001110 000 0 1456778888766678999988742 3446652 25899
Q ss_pred HHHHHHHhCCEEEEecCCcccccccCCC-----CccCCcEEEeCCCccc
Q psy7357 154 VCELIHEHGGQVYLDGANMNAQVGLCRP-----GDYGSDVSHLNLHKTF 197 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~~~~~~~~~~p-----~~~gaDiv~~~~hK~l 197 (302)
|.++|+++|+++|+|+++. +++-.... -...+|+++. .|.+
T Consensus 251 lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gK~l 296 (443)
T PRK08297 251 MRELCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVRPDIVAF--GKKT 296 (443)
T ss_pred HHHHHHHcCCEEEEechhh-ccCccchHHHHHhcCCCCCEEEe--cccc
Confidence 9999999999999999873 22111000 0124799998 5876
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-05 Score=81.18 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHH-HHHHhhcCC------------CCCEEEEc-CCCCcccH
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQ-CYHQAQDAH------------HRNVCLIP-VSAHGTNP 96 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~-~~~~~~g~~------------~~d~Vlv~-~~~hg~~~ 96 (302)
+...++.++|.++.+ ++. .++..+||+|+++++...+ .|+..+|.. .+.+||.- ...||.+.
T Consensus 409 epa~~LAe~L~~~~~~~~l~r-Vffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~ 487 (817)
T PLN02974 409 EPALRAAELLLGGPGKGWASR-VFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTL 487 (817)
T ss_pred HHHHHHHHHHHhccCCCCCCE-EEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCH
Confidence 455677777877664 233 4567899999888888764 465544421 24455555 45788776
Q ss_pred HHHHhCCC--------E------EEEeecCC--------------C------C---C-------CC------------HH
Q psy7357 97 ASAQMAGM--------S------VEPVSVRK--------------D------G---T-------ID------------FS 120 (302)
Q Consensus 97 ~~~~~~g~--------~------v~~i~~~~--------------~------g---~-------iD------------~~ 120 (302)
......+- . ..+++... . + . .| .+
T Consensus 488 GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~ 567 (817)
T PLN02974 488 GAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRS 567 (817)
T ss_pred HHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHHHH
Confidence 54332220 0 11111100 0 0 0 00 25
Q ss_pred HHHHHHhc-----cCCCeEEEEEecC--CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccccccCCC---C--ccC
Q psy7357 121 DLETKVKK-----NKETLSCLMITYP--STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQVGLCRP---G--DYG 185 (302)
Q Consensus 121 ~l~~~i~~-----~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~~~~~p---~--~~g 185 (302)
.+++.|++ ..+++++|+++-- ..-|++.+ -+++++++|+++|+++|+|++.. +++-.... . ...
T Consensus 568 ~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~T-GfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 568 YIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFT-GLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeeccc-CCCcccchhhHHhcCCC
Confidence 67777753 2357888888752 34566632 37999999999999999999852 22211110 1 123
Q ss_pred CcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
+||++. .|.++ || -.+|.+++++++.+.+.
T Consensus 647 PDIi~~--gKgLt-----gG~~Plaa~l~~~~I~~~f~ 677 (817)
T PLN02974 647 PDIACY--AKLLT-----GGLVPLAATLATEEVFEAFR 677 (817)
T ss_pred CCEEee--ccccc-----CCCCccEEEEEcHHHHHhhc
Confidence 699999 49886 46 25788888887776553
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.6e-06 Score=78.35 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=100.4
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHH-hhc------CCCCCEEEEcCCCCcccHHHH
Q psy7357 28 QARGYEQLIGELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQ-AQD------AHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~-~~g------~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
.+.|.++=+-|+++.+++++|++..++..++. |+..+--..+ +++.. ..+ ..++-+.|+|.|.|-.|...+
T Consensus 63 NY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~-~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~ 141 (425)
T PF12897_consen 63 NYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTIS-RAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAIT 141 (425)
T ss_dssp SS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHH-HHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHH
T ss_pred CCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHH-HHHhcCCCCCCCCchhccCceEEecCCCchHHHHHH
Confidence 34477888999999999999999887765543 3322222211 22211 111 123458899999988888899
Q ss_pred HhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC---CCceecc--ccHHHHHHH-HHHhCCEEEEecCCcc
Q psy7357 100 QMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP---STFGVFE--ENITDVCEL-IHEHGGQVYLDGANMN 173 (302)
Q Consensus 100 ~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P---n~~G~~~--~di~~I~~i-a~~~g~llivD~a~~~ 173 (302)
+..|++.+.||.+++| .|+|.+++++.+. +.++++. +-| |++|+.- +-+++++++ +.+.+-.++.|.|+.+
T Consensus 142 E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D-~svKGiW-cVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~v 218 (425)
T PF12897_consen 142 EHFGIEMIPVPMTEDG-PDMDMVEELVAED-PSVKGIW-CVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAV 218 (425)
T ss_dssp HHCT-EEEEEEEETTE-E-HHHHHHHTHTS-TTEEEEE-E-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT
T ss_pred HhhCcEEEecCCCCCC-CCHHHHHHHHhcC-CccceEE-eCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceE
Confidence 9999999999998888 5999999999642 5666654 444 7899873 135555554 2346888889988754
Q ss_pred cccccCCCCcc------------CCc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 174 AQVGLCRPGDY------------GSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 174 ~~~~~~~p~~~------------gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
...--..+... ..| ++..|++|=- |.|-|+++++++++-++
T Consensus 219 HhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-----f~GaGva~~aaS~~Nl~ 273 (425)
T PF12897_consen 219 HHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-----FPGAGVAFFAASEANLA 273 (425)
T ss_dssp -BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS------TTSS-EEEEE-HHHHH
T ss_pred eeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-----cCCcceeeeecCHHHHH
Confidence 43210111100 123 4555666621 33778999999865433
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.1e-06 Score=77.57 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=105.9
Q ss_pred HHHHHHHHhCCCee----------eEeeCchHHHHHHHHHHHHHH-HHhhcCC----------CCCEEEEcCCCCcccHH
Q psy7357 39 LETDLCEITGYDKI----------SFQPNSGAQGEYAGLRAIQCY-HQAQDAH----------HRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 39 ~~~~l~~l~g~~~~----------~~~~~~Ga~a~~a~l~a~~~~-~~~~g~~----------~~d~Vlv~~~~hg~~~~ 97 (302)
..+++.++++++.. -+..++.+.+.+.++++.|.- .+..+.+ .+=.+..++-+|.+.-.
T Consensus 118 vmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssvek 197 (511)
T KOG0628|consen 118 VMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEK 197 (511)
T ss_pred HHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHH
Confidence 34688888888753 122233345555555555432 1111111 12256677888877777
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCC--eEEEEEecCCCcee--ccccHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKET--LSCLMITYPSTFGV--FEENITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~--t~~V~i~~Pn~~G~--~~~di~~I~~ia~~~g~llivD~a~~~ 173 (302)
.+...+.+++.++.|.+..++.+.|+++|++...+ +-.+++.+-.+||. ++ ++.++..+|+++|+|++||+|+.-
T Consensus 198 a~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D-~l~elg~Vc~~~glWLHVDAAYAG 276 (511)
T KOG0628|consen 198 ACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFD-ELEELGPVCREEGLWLHVDAAYAG 276 (511)
T ss_pred hHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccc-cHHHhcchhhhcCEEEEeehhhcc
Confidence 77788999999999988889999999999853221 22333444334443 45 799999999999999999999852
Q ss_pred ccccc--CC---CCccCCcEEEeCCCcccCCCCCC
Q psy7357 174 AQVGL--CR---PGDYGSDVSHLNLHKTFCIPHGG 203 (302)
Q Consensus 174 ~~~~~--~~---p~~~gaDiv~~~~hK~l~~p~~~ 203 (302)
+.... .+ -|-..+|-+.++.||++.....+
T Consensus 277 sa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDC 311 (511)
T KOG0628|consen 277 SAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDC 311 (511)
T ss_pred ccccCHHHHHHhhcchhhccccCChhheeEEeeee
Confidence 22211 01 12334799999999999865443
|
|
| >KOG3846|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00053 Score=62.22 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=93.3
Q ss_pred CCCCEEEEcCCCCcccHH----HHHhCCCEEE----EeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc
Q psy7357 80 HHRNVCLIPVSAHGTNPA----SAQMAGMSVE----PVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE 149 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~----~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~ 149 (302)
++|-+|+.-..+|++... .++..|..+. -+...+ +..+-.+++-+.|+.+.|..+.|++..-. +||..-
T Consensus 153 ekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~F- 231 (465)
T KOG3846|consen 153 EKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYF- 231 (465)
T ss_pred chhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeeccccc-
Confidence 346688887778876543 3456676533 333322 23577889999998888888888887654 789888
Q ss_pred cHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCC
Q psy7357 150 NITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLA 218 (302)
Q Consensus 150 di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~ 218 (302)
|+.+|...-+..|+++=.|-||..+-..+ ..-+||+|+.|--+-|.+.. |+ ++|=+.+.++..
T Consensus 232 di~aIT~Agq~kgc~VGfDLAHAvgNVpL-~LHdWgVDFACWCSYKYlna-----GaGgIgGlFvHekh~ 295 (465)
T KOG3846|consen 232 DIGAITFAGQFKGCLVGFDLAHAVGNVPL-QLHDWGVDFACWCSYKYLNA-----GAGGIGGLFVHEKHT 295 (465)
T ss_pred chhhhhhcccCCCcEechhhhhhhcCCce-EEeecCCceEEEeeeccccc-----CCCccceeeeehhhh
Confidence 89999977777899999998886665554 34689999999988898863 44 455555554433
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=60.87 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=92.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~~v 106 (302)
-|+......+++.+++++|++.+.+..++=++.+ +++-|+. .+||.|++.+.. +...- +...-++
T Consensus 135 YGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~-S~ipafs--------KrGDIi~~de~~---nfaIq~GlqlSRS~i 202 (467)
T KOG1358|consen 135 YGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIE-SAIPAFS--------KRGDIIFVDEAV---NFAIQKGLQLSRSTI 202 (467)
T ss_pred cccceeecccHHHHHHhhCCcceeeeccccchhh-hcchhhh--------ccCcEEEEehhh---hHHHHHHHhhhhhee
Confidence 4566667788889999999998877665433322 4444433 678888887655 33221 1122233
Q ss_pred EEeecCCCCCCCHHHHHHHHhccC------C---CeEEEEEecC--CCceeccccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNK------E---TLSCLMITYP--STFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~------~---~t~~V~i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
++. ...|++++++.+-+.. + .|+-.++... -++|.+. ++++|.++..++...+++|... +.
T Consensus 203 ~~F-----khndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~-pl~~iv~lk~Kyk~RvildEs~--Sf 274 (467)
T KOG1358|consen 203 SYF-----KHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDIC-PLPEIVKLKNKYKFRVILDESL--SF 274 (467)
T ss_pred EEe-----cCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccc-ccHHHHHHHhhheEEEEEeccc--cc
Confidence 333 3468899988875321 1 2333344432 2578888 7999999999999999999864 33
Q ss_pred cccCCCC----------ccCCcEEEeCCCcccC
Q psy7357 176 VGLCRPG----------DYGSDVSHLNLHKTFC 198 (302)
Q Consensus 176 ~~~~~p~----------~~gaDiv~~~~hK~l~ 198 (302)
+.+.+.| .-.+|+++++..-.++
T Consensus 275 G~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala 307 (467)
T KOG1358|consen 275 GVLGKTGRGVTEHFGVPITDIDIVTASMETALA 307 (467)
T ss_pred ccccccCccccccCCCCccceeeeeeccccccc
Confidence 3332211 1236899987544443
|
|
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=60.80 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=91.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC--CCCCCCHHHHHHHHhccCCCeEEEEE--ecCCCceec---cccHH
Q psy7357 80 HHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMI--TYPSTFGVF---EENIT 152 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i--~~Pn~~G~~---~~di~ 152 (302)
-++..|.+|+|.+|.|....+..|+.+..+..- .+..+|.+.+-+-+.+..+. ..|++ |.-|+||+= + ..+
T Consensus 144 ~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~g-s~ilLhaCaHNPTGvDPt~e-qw~ 221 (427)
T KOG1411|consen 144 YPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEG-SIILLHACAHNPTGVDPTKE-QWE 221 (427)
T ss_pred ccccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCCCC-cEEEeehhhcCCCCCCccHH-HHH
Confidence 357789999999999999888899988777652 35678998888888754333 22333 223788863 4 588
Q ss_pred HHHHHHHHhCCEEEEecCC-cccccccCC-C------CccCCcEEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 153 DVCELIHEHGGQVYLDGAN-MNAQVGLCR-P------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 153 ~I~~ia~~~g~llivD~a~-~~~~~~~~~-p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
+|.++.++.+.+-++|.|+ ..+.+.+.. . .+.|-++++. |+|++-+|.-|=|+|.+.+
T Consensus 222 ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~la---QSyAKNMGLYgERvGa~sv 287 (427)
T KOG1411|consen 222 KISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLA---QSYAKNMGLYGERVGALSV 287 (427)
T ss_pred HHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEee---hhhhhhcchhhhccceeEE
Confidence 9999999999888899875 233333211 0 1235567764 7999999998889888743
|
|
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=56.83 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=88.9
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCC-EEEEeecC--CCCCCCHHHHHHHHhccCCCeEEEEE--ecCCCceec--cccHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGM-SVEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMI--TYPSTFGVF--EENITD 153 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~-~v~~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i--~~Pn~~G~~--~~di~~ 153 (302)
.++.|.+++|.+..|....+..|+ ++..+++= +.-.+|++.+...|+..++. ..+++ |.-|+||+= ++...+
T Consensus 124 ~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~-si~iLhaCAhNPTGmDPT~EQW~q 202 (410)
T KOG1412|consen 124 NKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEG-SIIILHACAHNPTGMDPTREQWKQ 202 (410)
T ss_pred ccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCC-cEEeeeccccCCCCCCCCHHHHHH
Confidence 356799999999999999888895 56677762 23478999999999754332 22332 223788863 226889
Q ss_pred HHHHHHHhCCEEEEecCC-cccccccCCCC--------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 154 VCELIHEHGGQVYLDGAN-MNAQVGLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~-~~~~~~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
|++..++++.+.++|.|+ ..+.+.+ ..+ +.|..+.+. |+|++-.|+-++|+|-+.+-
T Consensus 203 ia~vik~k~lf~fFDiAYQGfASGD~-~~DawAiR~fV~~g~e~fv~---QSFaKNfGlYneRvGnltvv 268 (410)
T KOG1412|consen 203 IADVIKSKNLFPFFDIAYQGFASGDL-DADAWAIRYFVEQGFELFVC---QSFAKNFGLYNERVGNLTVV 268 (410)
T ss_pred HHHHHHhcCceeeeehhhcccccCCc-cccHHHHHHHHhcCCeEEEE---hhhhhhcccccccccceEEE
Confidence 999999999998899875 2333332 111 224445554 68888888889999988653
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=49.19 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCc
Q psy7357 23 FIPQDQARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHG 93 (302)
Q Consensus 23 y~p~e~sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg 93 (302)
|++ ++|..++++.+.+.+.+.+| .+..++..++|++ +.+.++.++. ++||.|++++|.|+
T Consensus 88 Y~~---~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~--------dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 88 FQD---YHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA--------DPGDAFLVPTPYYA 152 (153)
T ss_pred CCC---CCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc--------CCCCEEEEeCCCCC
Confidence 555 68999999999999999988 3445777777774 4434444433 78999999999875
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0055 Score=56.65 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHH---hCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC-EE
Q psy7357 35 LIGELETDLCEI---TGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM-SV 106 (302)
Q Consensus 35 ~~~e~~~~l~~l---~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~-~v 106 (302)
+..|+++.|++| .|-.. -.+..+.|+ +-..|++.|+..-. ....+.-+|+.+.|.|+.++.......- ..
T Consensus 44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~--~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y 121 (363)
T PF04864_consen 44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNA--SPSSSPASVVAAAPYYSSYPEQTDFFDSRLY 121 (363)
T ss_dssp S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT---TTSSSEEEEE-SS--CHHHHHCCCT-BTTE
T ss_pred ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCC--CCCCCCceeEecCCCccchHHHHHhccccCc
Confidence 334555555544 44222 256667776 43446666654320 0112345788888887777664332111 11
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCcc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDY 184 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~ 184 (302)
.+-. |. .... +...+.+-.=++++|| |.|.+.+ .+++..+..+|.|-|+.+..- .+..|.
T Consensus 122 ~w~G-da------~~~~---~~~~~~~~IElVTSPNNPDG~lr~------~V~~g~~~k~I~D~AYYWPhyTpI~~~a-- 183 (363)
T PF04864_consen 122 KWAG-DA------SNFK---NSDNPSPYIELVTSPNNPDGQLRE------AVLNGSSGKVIHDLAYYWPHYTPITAPA-- 183 (363)
T ss_dssp EEEE-EC------CCGT---T-S-CCGEEEEEESS-TTT------------SSTTTEEEEEEE-TT-STTTS---S-B--
T ss_pred cccc-cH------Hhhc---cCCCCCCeEEEEeCCCCCcccccc------hhcCCCCcceeeeeeeecccccccCCCC--
Confidence 1111 11 0010 1101234444789995 8888763 233556677789999876553 333443
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
.-||+.++..|. .|=+|-|+|+.++++ +..++|
T Consensus 184 D~DiMLFT~SK~----TGHAGSR~GWAlVKD~~Va~kM 217 (363)
T PF04864_consen 184 DHDIMLFTLSKL----TGHAGSRFGWALVKDEEVAKKM 217 (363)
T ss_dssp --SEEEEEHHHH----CS-GGG-EEEEEES-HHHHHHH
T ss_pred CCceEEEEEecc----cCccccccceeeecCHHHHHHH
Confidence 349999966553 344688999999995 444444
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.067 Score=49.89 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee--eEeeCchHHH-HHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-HHHHhCCC-
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI--SFQPNSGAQG-EYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-ASAQMAGM- 104 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga~a-~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-~~~~~~g~- 104 (302)
.-+.+.+.+.++.+++|++.+.. .++..+|+.+ ..++.+.+.. +++.. .+....++... ..++..+.
T Consensus 46 k~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~-------~~~~~-yv~~g~Ws~~a~~eA~~~~~~ 117 (365)
T COG1932 46 KEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLG-------KRGTD-YVDTGAWSEFAIKEAKKVGKQ 117 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhc-------ccCce-eEeeeehhHhHHHHHHHhccc
Confidence 34667889999999999999753 4444555533 3344444441 22221 22212222221 12333332
Q ss_pred -EEEEeecCCC--C-CCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 105 -SVEPVSVRKD--G-TIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 105 -~v~~i~~~~~--g-~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
.+........ | ..|++..+ ++ ++.+-|.+|. .+.+|+--++...+.. + .++++|.... .. .
T Consensus 118 ~~~~~~~~~~~~~~~iP~~~~~~--~~---~~~ayv~~~~NeTi~Gv~v~~~p~~~~---~--~~~v~D~SS~--il--s 183 (365)
T COG1932 118 PKLIDARIEEAGYGSIPDLSKWD--FS---DNDAYVHFCWNETISGVEVPELPDIGS---D--GLLVADASSA--IL--S 183 (365)
T ss_pred ccccccceeccCccCCCChhhcc--cC---CCccEEEEecCCcccceEccCCCCCCC---C--ceEEEecccH--Hh--c
Confidence 2222221111 2 33555443 33 4434355554 3367876434444432 1 6778997532 21 1
Q ss_pred CC-CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 180 RP-GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 180 ~p-~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
+| +--..|++.++.+|-|+ +-|++++++++++++++...
T Consensus 184 r~iDvsk~dviyagaQKnlG------paGltvvIvr~~~l~r~~~~ 223 (365)
T COG1932 184 RPIDVSKYDVIYAGAQKNLG------PAGLTVVIVRPDLLERAESY 223 (365)
T ss_pred CCCChhHcceEEEehhhccC------ccceEEEEEcHHHHhccccc
Confidence 22 22346999999999875 34799999999988887664
|
|
| >KOG1403|consensus | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.031 Score=50.82 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCEEEEecCCcccccccCC------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 151 ITDVCELIHEHGGQVYLDGANMNAQVGLCR------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 151 i~~I~~ia~~~g~llivD~a~~~~~~~~~~------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++++++.+|.+|..+|.|.++. +++...+ .-.+-.||++. .|.++ -| -.++.+++.+++++.+.+.
T Consensus 232 Fq~Va~~Vr~aGGv~IaDEVQv-GFGRvG~hyWafq~y~fiPDIVtm--gKpmG----NG-hPVa~VattkeIA~Af~at 303 (452)
T KOG1403|consen 232 FQAVADAVRSAGGVCIADEVQV-GFGRVGSHYWAFQTYNFIPDIVTM--GKPMG----NG-HPVAAVATTKEIAQAFHAT 303 (452)
T ss_pred HHHHHHHHhcCCCeEEeehhhh-cccccchhhhhhhhhccccchhee--cccCC----CC-CeeeEEeccHHHHHHhccc
Confidence 6788999999999999999872 3322111 11234688887 35444 33 4578888888888777653
|
|
| >KOG3843|consensus | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.5 Score=42.47 Aligned_cols=182 Identities=15% Similarity=0.143 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhCCC---eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 35 LIGELETDLCEITGYD---KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~---~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
+-.++...+-.|.|+- .+.+.|-.+....-.++.++|. + +.+-+-|+-++....+-..+.-..|++++.+..
T Consensus 58 isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~----k-rpkakyiiw~ridqks~~ksi~~agfepiiie~ 132 (432)
T KOG3843|consen 58 ISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRH----K-RPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIEN 132 (432)
T ss_pred HHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhh----c-CCcccEEEEEecchHHHHHHHHhcCCCceeeec
Confidence 3456666666677753 3444554443222233334442 1 123345666665544444455577998887764
Q ss_pred CCCC---CCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccc---c-ccCCCCc
Q psy7357 112 RKDG---TIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQ---V-GLCRPGD 183 (302)
Q Consensus 112 ~~~g---~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~---~-~~~~p~~ 183 (302)
--+| ..|++.+++.+++..++.-+.+.+..+ +--...+++++|+.||..|+++-+|..|+..-. . .+....+
T Consensus 133 i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~ 212 (432)
T KOG3843|consen 133 ILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAE 212 (432)
T ss_pred cccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhh
Confidence 2333 579999999998766664333332222 222334479999999999999988886642100 0 0000111
Q ss_pred -cCCcEEEeCCCcccCCCCCCCCCcceeEEE-eC----CCCCCCCCCcc
Q psy7357 184 -YGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KS----HLAPFLPVHPL 226 (302)
Q Consensus 184 -~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~----~l~~~lpg~~~ 226 (302)
-.+|.++.++.|-|..|.| | .+++. ++ ++.+..|||-.
T Consensus 213 ~grida~vqsldknf~vpvg--g---aiia~fk~n~iq~iak~ypgras 256 (432)
T KOG3843|consen 213 CGRIDAFVQSLDKNFMVPVG--G---AIIAAFKDNFIQEIAKMYPGRAS 256 (432)
T ss_pred hccHHHHHHHhhhcceeecc--h---hHhhHhHHHHHHHHHHhCCCccc
Confidence 1368899999999998753 2 22222 33 34455588764
|
|
| >KOG1405|consensus | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.46 Score=44.41 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=60.3
Q ss_pred CHHHHHHHHhccC---CCeEEEEEecC-CCce----eccccHHHHHHHHHHhCCEEEEecCCcccc--ccc-C--C-CCc
Q psy7357 118 DFSDLETKVKKNK---ETLSCLMITYP-STFG----VFEENITDVCELIHEHGGQVYLDGANMNAQ--VGL-C--R-PGD 183 (302)
Q Consensus 118 D~~~l~~~i~~~~---~~t~~V~i~~P-n~~G----~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~~-~--~-p~~ 183 (302)
-++++|++|.+++ ..++++++.-- +.-| .-. -++.+.+|+++||+.++||++|.-+. +-+ . . --+
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~-Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPD-FFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHH-HHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC
Confidence 3778888887653 24566666521 2322 223 47899999999999999999984111 111 0 0 012
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
..+|+|++| |-|-. | | ..-++++.+.-|-|++
T Consensus 333 ~PpD~vTFS--KK~q~----g----G-ffh~~~frpn~pYrif 364 (484)
T KOG1405|consen 333 SPPDVVTFS--KKFQT----G----G-FFHDEEFRPNEPYRIF 364 (484)
T ss_pred CCccceehh--hhhhc----C----c-cccCcccCCCchHHHh
Confidence 247999996 54431 2 4 4456788888788887
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 302 | ||||
| 1wyt_B | 474 | Crystal Structure Of Glycine Decarboxylase (P-Prote | 6e-44 |
| >pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of The Glycine Cleavage System, In Apo Form Length = 474 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474 | Back alignment and structure |
|---|
Score = 482 bits (1243), Expect = e-171
Identities = 124/337 (36%), Positives = 174/337 (51%), Gaps = 50/337 (14%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MK N ++HP+ A+G +L+ EL L +TG D I+ +P +GA
Sbjct: 76 MKYNPKLHEEAA--RLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGA 133
Query: 61 QGEYAGLRAIQCYHQAQ-DAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDF 119
GE G+ I+ YH+ + + R V L+P SAHG+NPA+A MAG V + +G +D
Sbjct: 134 HGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDL 193
Query: 120 SDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179
L+ ++ + ++ LM+T P+T G+FE I ++ L E G Q+Y DGAN+NA +G
Sbjct: 194 EALKRELGPH---VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWA 250
Query: 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDS-------- 231
RPGD G DV HLNLHKTF +PHGGGGPG GP+GVK+HLAP+LPV + +
Sbjct: 251 RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDR 310
Query: 232 --SIGAVSAAHYGSASILPISWAYIRRL------------------------ESHYKTLF 265
SIG V + YG+ L +WAYIR L E Y+ +
Sbjct: 311 PKSIGRVRSF-YGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPY 369
Query: 266 RSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
G HEFV A+D+AK L++
Sbjct: 370 D----GPSMHEFVAQ-----PPEGFRALDLAKGLLEL 397
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 1e-07
Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 22/201 (10%)
Query: 16 QLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYH 74
L + P A L ++ + G + + P S L A
Sbjct: 117 NLVDPQPKASG--ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSA----- 169
Query: 75 QAQDAHHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKNKE 131
A+ + NV + P ++H + + GM VE V + D+E +KK E
Sbjct: 170 -ARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIE 228
Query: 132 T--LSCLMITYPST-FGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR-----PGD 183
C++ T ++I ++ ++ + ++GA Q
Sbjct: 229 LGNRPCVLSTLTFFPPRNS-DDIVEIAKICENYDIPHIINGA-YAIQNNYYLEKLKKAFK 286
Query: 184 YGSDVSHLNLHKTFCIPHGGG 204
Y D + K P GGG
Sbjct: 287 YRVDAVVSSSDKNLLTPIGGG 307
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 5e-07
Identities = 41/240 (17%), Positives = 68/240 (28%), Gaps = 37/240 (15%)
Query: 1 MKLNATTEMIPC-SFPQLTNMHPFIPQDQARGYEQLIG-----ELETDLCEITGYDKISF 54
L ++ I + M G E G +L+ E+ YD I
Sbjct: 37 FLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIP 96
Query: 55 QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR-- 112
G E + Y Q + V + T ++ V+ +
Sbjct: 97 AH-QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAF 155
Query: 113 -------KDGTIDFSDLETKVKKNKET---LSCLMITYPSTFG--VFEENITDVCELIHE 160
G D L+ + ++ +T S G V N+ +V E+ +
Sbjct: 156 DSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ 215
Query: 161 HGGQVYLDGANM--NAQVGLCRPGDYGS--------------DVSHLNLHKTFCIPHGGG 204
HG V +D A NA R Y + D ++ K + GG
Sbjct: 216 HGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGL 275
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 86 LIPVSAHGTNPASAQMAGMSVE--PVSVRKDGTIDFSDLETKVKKNKETLSCLM--ITYP 141
++ + H ++ +A+ AG+++ P + D I + +++ K+ ++ ITYP
Sbjct: 97 VMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP 156
Query: 142 S-TFGVFEENITDVCELIHEHGGQVYLDGA------NMNAQVGLCRPGDYGSDVSHLNLH 194
+G ++ + ++ E+ + ++GA ++ + + G+D + H
Sbjct: 157 DGNYGN-LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK-------EIGADFIVGSGH 208
Query: 195 KTFCIPHGGGGPGMGPIGV 213
K+ GPIGV
Sbjct: 209 KSM-------AA-SGPIGV 219
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 39/238 (16%), Positives = 65/238 (27%), Gaps = 43/238 (18%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQ------DQARGYEQLIGELETDLCEITGYDKISF 54
LN+ I TN D+A + LE + E+ G+ I
Sbjct: 36 FLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVP 95
Query: 55 QPNSGAQGEYAGLRA--------IQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106
+ G E + + +H +G
Sbjct: 96 -THQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYH-------QEKNGAVFVDIVRDEAHD 147
Query: 107 EPVSVRKDGTIDFSDLE---TKVKKNKETLSCLMITYPSTFG--VFEENITDVCELIHEH 161
+++ G ID L+ + CL +T G V N+ V EL H
Sbjct: 148 AGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH 207
Query: 162 GGQVYLDGANM--NAQVGLCRPGDYG--------------SDVSHLNLHKTFCIPHGG 203
G +V+ D NA + + +D ++ K + GG
Sbjct: 208 GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGG 265
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Length = 438 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 116 TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175
T+ T + + E + +++ P+ G E++ E H G A+ +
Sbjct: 180 TLPLEGGRTPLPEVGEEVGAVVVQNPNFLGAL-EDLGPFAEAAHGAGALFVA-VADPLSL 237
Query: 176 VGLCRPGDYGSDV------SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222
L PG YG+D+ S +P G GGP G + K LP
Sbjct: 238 GVLKPPGAYGADIAVGDGQS-------LGLPMGFGGPHFGFLATKKAFVRQLP 283
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 9e-05
Identities = 34/216 (15%), Positives = 60/216 (27%), Gaps = 27/216 (12%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D+A + L + I GY G E + + + + R+ +
Sbjct: 67 DEAYSGSRSYYALAESVKNIFGYQYTIPTH-QGRGAEQIYIPVLIKKREQEKGLDRSKMV 125
Query: 87 IPVSAHG-TNPASAQMAGMSVEPV----------SVRKDGTIDFSDLETKVKKNKE---T 132
+ T +Q+ G +V V G D LE +++
Sbjct: 126 AFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP 185
Query: 133 LSCLMITYPSTFG--VFEENITDVCELIHEHGGQVYLDGANM--NAQVGLCRPGDYGSDV 188
IT S G V N+ + + ++ V +D A NA R +Y
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245
Query: 189 SHLNLHK--------TFCIPHGGGGPGMGPIGVKSH 216
+ P G + +K
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD 281
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 9/131 (6%)
Query: 83 NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG---TIDFSDLETKVKKNKETLSCLMIT 139
+ P + S AG + +G D +E KV++ + +
Sbjct: 163 KYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHS 222
Query: 140 YPSTFG-VFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNL----- 193
S F + + ++ + + ++ A G+ V ++
Sbjct: 223 TTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSL 282
Query: 194 HKTFCIPHGGG 204
K F +P GG
Sbjct: 283 DKNFMVPVGGA 293
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 9/131 (6%)
Query: 83 NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG---TIDFSDLETKVKK-NKETLSCLMI 138
+ P + S AG + +G D +E K+++ E + CL
Sbjct: 145 KYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHS 204
Query: 139 TYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNL----- 193
T + + ++ + + ++ A G+ V ++
Sbjct: 205 TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSL 264
Query: 194 HKTFCIPHGGG 204
K F +P GG
Sbjct: 265 DKNFMVPVGGA 275
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 23/161 (14%)
Query: 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH----- 92
+ ET + +I G F P SG + LR A +R V +H
Sbjct: 52 DFETKIAKILGKQSAVFFP-SGTMAQQIALRI----W-ADRKENRRV-AYHPLSHLEIHE 104
Query: 93 -GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF--EE 149
++ ++ + + + D+++ + + + + G E
Sbjct: 105 QD---GLKELQQITPLLLGT-ANQLLTIDDIKSLREP--VSSVLIELPQREIGGQLPAFE 158
Query: 150 NITDVCELIHEHGGQVYLDGAN-MNAQVGL-CRPGDYGSDV 188
+ + E HE G ++LDGA + +
Sbjct: 159 ELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALF 199
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-04
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 65 AGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLET 124
A + ++PVSAH +AQ G+ + + D D + +
Sbjct: 176 AMKTYRDWARATKGITAPEA-VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMRE 234
Query: 125 KVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGA 170
+ N + + P + I ++ L EHG ++D
Sbjct: 235 AITPNT---VVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC 277
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 302 | |||
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 100.0 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 100.0 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.89 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.89 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.88 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.88 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.87 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.87 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.87 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.87 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.87 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.87 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.86 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.86 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.86 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.85 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.85 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.85 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.85 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.85 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.85 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.84 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.84 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.84 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.84 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.84 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.84 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.84 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.84 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.84 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.83 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.83 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.83 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.83 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.83 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.82 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.82 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.82 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.82 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.82 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.81 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.81 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.81 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.81 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.81 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.81 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.81 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.8 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.8 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.8 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.8 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.8 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.8 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.8 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.8 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.8 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.8 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.8 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.8 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.79 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.79 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.79 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.79 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.79 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.79 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.79 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.79 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.78 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.78 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.78 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.78 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.78 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.78 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.78 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.78 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.78 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.78 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.77 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.77 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.77 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.77 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.77 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.77 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.77 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.77 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.77 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.77 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.77 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.77 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.77 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.77 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.77 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.76 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.76 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.76 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.76 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.76 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.76 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.76 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.75 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.75 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.75 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.75 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.75 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.75 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.75 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.75 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.75 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.75 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.75 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.75 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.75 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.75 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.75 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.75 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.75 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.75 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.74 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.74 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.74 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.74 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.74 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.74 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.74 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.74 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.73 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.73 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.73 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.73 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.73 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.73 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.73 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.73 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.73 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.73 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.72 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.72 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.71 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.71 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.71 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.71 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.71 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.71 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.7 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.7 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.7 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.7 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.7 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.7 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.7 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.69 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.69 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.69 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.68 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.68 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.68 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.68 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.68 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.67 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.67 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.67 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.67 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.65 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.64 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.64 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.64 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.64 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.64 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.64 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.64 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.63 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.63 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.62 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.62 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.62 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.62 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.62 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.62 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.62 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.61 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.61 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.61 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.61 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.61 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.61 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.6 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.6 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.6 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.59 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.58 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.58 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.57 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.33 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.56 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.56 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.55 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.55 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.55 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.54 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.53 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.53 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.52 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.51 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.5 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.5 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.5 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.5 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.48 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.48 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.48 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.48 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.47 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.47 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.46 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.46 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.45 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.44 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.43 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.42 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.41 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.4 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.4 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.39 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.38 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.38 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.37 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.3 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.29 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.23 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.86 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.15 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.04 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.01 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.92 |
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=302.50 Aligned_cols=287 Identities=39% Similarity=0.713 Sum_probs=226.1
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcC-
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDA- 79 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~- 79 (302)
|+++|++++.+..+ |++||||+|.+.+||.+++++++++++++++|++...+++++|++|+.+++++++.++..+|+
T Consensus 76 ~~~~p~v~~~~~~~--~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~ 153 (474)
T 1wyu_B 76 MKYNPKLHEEAARL--FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEG 153 (474)
T ss_dssp CCCCCHHHHHHHHT--TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccCCHHHHHHHHHH--HHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence 78999999999887 999999999558999999999999999999999987667788888887777777765433332
Q ss_pred CCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceec-cccHHHHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF-EENITDVCELI 158 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~-~~di~~I~~ia 158 (302)
.++++|+++++.|+++...++..|++++.+|+++++.+|+++|+++++ ++|++|++++||++|.+ + |+++|+++|
T Consensus 154 ~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~---~~t~~v~~~~pn~~G~~~~-~l~~i~~l~ 229 (474)
T 1wyu_B 154 RTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFER-RILEISRLC 229 (474)
T ss_dssp TTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCT-THHHHHHHH
T ss_pred cCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhC---CCceEEEEECCCCCcccCC-CHHHHHHHH
Confidence 234599999999999998899999999999998889999999999998 78999999999999988 6 799999999
Q ss_pred HHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC----------
Q psy7357 159 HEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS---------- 228 (302)
Q Consensus 159 ~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~---------- 228 (302)
|++|+++|+|+++.....+..+++++++|++++++||+|+.|+|+||||+|++++++++++++++++++.
T Consensus 230 ~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~ 309 (474)
T 1wyu_B 230 KEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFD 309 (474)
T ss_dssp HHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECC
T ss_pred HHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEeccc
Confidence 9999999999998544433346677899999999999999999999999999999999999888544320
Q ss_pred -----------CCCcchhhhHHHHhhH-h---h---HHHH---HHHHH-HHh-cccccccccCCCcceeEEEEEEecccc
Q psy7357 229 -----------IDSSIGAVSAAHYGSA-S---I---LPIS---WAYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFK 285 (302)
Q Consensus 229 -----------~~~~l~~~~a~~~~~~-~---~---~~~~---~~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~ 285 (302)
.++.+...+|..++.. + + .+.. ..|+. +|. .|++++++++. +|+|+++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~--- 382 (474)
T 1wyu_B 310 RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPS----MHEFVAQPP--- 382 (474)
T ss_dssp CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSC----CSCEEEBCS---
T ss_pred CcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCc----ceEEEEEcC---
Confidence 1222223333333321 1 1 1111 13433 555 37887665444 889999873
Q ss_pred ccCCCCHHHHHHHhhcC
Q psy7357 286 KSANIEAVDIAKRLMDY 302 (302)
Q Consensus 286 ~~~g~~~~~~~~~l~~~ 302 (302)
.|.+..++.++|+++
T Consensus 383 --~~~~~~~l~~~L~~~ 397 (474)
T 1wyu_B 383 --EGFRALDLAKGLLEL 397 (474)
T ss_dssp --TTCCHHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHHHC
Confidence 257899999999763
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=261.29 Aligned_cols=271 Identities=19% Similarity=0.256 Sum_probs=206.5
Q ss_pred CCccccccccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhc
Q psy7357 1 MKLNATTEMIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQD 78 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g 78 (302)
++++|+++++++.+++| ++|+|||| +.+||.++.++++++++++++|++..++...+|++ +.++++++++ +
T Consensus 75 ~~~~p~~v~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~----- 147 (438)
T 1wyu_A 75 SHHVPPVVQALAARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-E----- 147 (438)
T ss_dssp CCCCCHHHHHHHTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-H-----
T ss_pred CCcCcHHHHHHHhcchhhhcCCCCcc-hhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-c-----
Confidence 36789999888888888 99999999 89999999999999999999999987665566653 3346666543 1
Q ss_pred CCCCCEEEEcCCCCcccHHH----HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 79 AHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 79 ~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
+++|+|+++++.|+++... ++..|++++.+|. +++.+|+++ ++ ++|++|++++||++|.+. |+++|
T Consensus 148 -~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~---~~t~~v~i~~pn~tG~~~-~l~~i 217 (438)
T 1wyu_A 148 -TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG---EEVGAVVVQNPNFLGALE-DLGPF 217 (438)
T ss_dssp -HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC---TTEEEEEEESSCTTSBCC-CHHHH
T ss_pred -CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC---CCeEEEEEECCCCCeEEe-cHHHH
Confidence 4689999999999877643 3568999999997 567888876 55 789999999999999999 89999
Q ss_pred HHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------ 228 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------ 228 (302)
+++||++|+++++|.. ..+++.+..++++++|+++++ +|.|++|+++|||++|++++++++.+++|++++|.
T Consensus 218 ~~la~~~g~~vivd~d-~~a~g~~~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~ 295 (438)
T 1wyu_A 218 AEAAHGAGALFVAVAD-PLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEG 295 (438)
T ss_dssp HHHHHHTTCEEEEECC-TTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTS
T ss_pred HHHHHHcCCEEEEEec-hhhccCcCCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCC
Confidence 9999999999997753 123444455678899999999 77799999999999999999999999998775431
Q ss_pred ---------------------C----CCcchhhhHHHHhhHh----hH---HHHH---HHHH-HHh--cccccccccCCC
Q psy7357 229 ---------------------I----DSSIGAVSAAHYGSAS----IL---PISW---AYIR-RLE--SHYKTLFRSSRS 270 (302)
Q Consensus 229 ---------------------~----~~~l~~~~a~~~~~~~----~~---~~~~---~y~~-~l~--~g~~~~~~~~~~ 270 (302)
. ++.+.+++|+.|+... +. ++.. .|+. +|+ +|+++..+.++
T Consensus 296 ~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~- 374 (438)
T 1wyu_A 296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPF- 374 (438)
T ss_dssp CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSB-
T ss_pred CcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCe-
Confidence 1 1223344444444421 11 1111 3433 665 38887654345
Q ss_pred cceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 271 GLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 271 ~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
++.|.++.+ .+..++.++|++
T Consensus 375 ---~~~~~~~~~-------~~~~~~~~~L~~ 395 (438)
T 1wyu_A 375 ---FNEFALALP-------KDPEAVRRALAE 395 (438)
T ss_dssp ---CSEEEEECS-------SCHHHHHHHHHH
T ss_pred ---EEEEEEeCC-------CCHHHHHHHHHH
Confidence 888888754 568899998875
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=241.35 Aligned_cols=249 Identities=17% Similarity=0.179 Sum_probs=169.7
Q ss_pred CCcccccHHHHHHHHH----HHHHHHhCCCee----eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 25 PQDQARGYEQLIGELE----TDLCEITGYDKI----SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 25 p~e~sqG~l~~~~e~~----~~l~~l~g~~~~----~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
|...+.|-.+.+++++ ++.+++||++.+ |++|.||++|++++++|+. +|+|+|+..+..||.|.
T Consensus 87 Pg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All--------~PGD~ilg~~l~~GGHl 158 (490)
T 3ou5_A 87 PGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHL 158 (490)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------C-CCCEECBC-------
T ss_pred CCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc--------CCCCEEEecccCCCCcc
Confidence 3344555558887776 478999999975 9999999999999999987 79999999999888764
Q ss_pred HH--------H--HhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEE
Q psy7357 97 AS--------A--QMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQV 165 (302)
Q Consensus 97 ~~--------~--~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~ll 165 (302)
.. . ....++.+.+++|+ ++.||+|++++.+.+++|+. |++.. +.+-... |++++++||++.|+++
T Consensus 159 tHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPkl--Ii~G~-SaY~r~i-d~~~~reIAd~vGA~L 234 (490)
T 3ou5_A 159 THGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRL--IIAGT-SAYARLI-DYARMREVCDEVKAHL 234 (490)
T ss_dssp ---------------------CBCEETTTTEECHHHHHHHHHHHCCSE--EEECC-SSCCSCC-CHHHHHHHHHHHTCEE
T ss_pred cccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCe--EEECC-ccCcccc-CHHHHHHHHhhcccEE
Confidence 31 1 12235677777775 68999999999999877764 54444 5444555 8999999999999999
Q ss_pred EEecCCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC---------------CCCCCCCCccc
Q psy7357 166 YLDGANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH---------------LAPFLPVHPLS 227 (302)
Q Consensus 166 ivD~a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~---------------l~~~lpg~~~~ 227 (302)
++|.||..++ +.+.+|-.+ +|||++++||||. ||+.|+|+++++ +.++|...+|+
T Consensus 235 m~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLr------GPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFP 307 (490)
T 3ou5_A 235 LADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLR------GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFP 307 (490)
T ss_dssp EEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTC------SCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTT
T ss_pred EechhhhhhhhcccccCCcccc-ceEEecccccccc------CCCceEEEeccccccccccccchhHHHHHHHHHhhcCc
Confidence 9999996444 456788776 8999999999998 899999999973 33444333332
Q ss_pred C-CCCcchhhhHHHHhhHhh-HHH-HHHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCH
Q psy7357 228 S-IDSSIGAVSAAHYGSASI-LPI-SWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEA 292 (302)
Q Consensus 228 ~-~~~~l~~~~a~~~~~~~~-~~~-~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~ 292 (302)
. +..++++..|+...++.. +.. ...|++ .|. .||+++.+|++ +|++++|+++ .|+++
T Consensus 308 g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTd----nHlvLvDl~~----~g~tG 379 (490)
T 3ou5_A 308 SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTD----NHLVLVDLRP----KGLDG 379 (490)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS----SSEEEEECGG----GTCCH
T ss_pred cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCC----ceEEEEeccc----cCCCH
Confidence 1 122444444467777653 222 236766 455 79999987666 9999999985 37899
Q ss_pred HHHHHHhh
Q psy7357 293 VDIAKRLM 300 (302)
Q Consensus 293 ~~~~~~l~ 300 (302)
+++++.|-
T Consensus 380 ~~ae~~Le 387 (490)
T 3ou5_A 380 ARAERVLE 387 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888874
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=199.32 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=152.0
Q ss_pred CccCCCCCCCcccccHHHHHHHHHHHHHHHhCCC--e-eeEeeCchHHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCCCC
Q psy7357 17 LTNMHPFIPQDQARGYEQLIGELETDLCEITGYD--K-ISFQPNSGAQGEYAGLRAIQCYHQA-QDAHHRNVCLIPVSAH 92 (302)
Q Consensus 17 ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~~~~d~Vlv~~~~h 92 (302)
|...+++++ +.++|..++..++++++++++|++ . ..+.+++|++++..++.+++.+... .| .++++|+++.+.|
T Consensus 91 ~~~~~~~~~-~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g-~~~~~Vi~~~~~h 168 (497)
T 3mc6_A 91 YCVANQLHP-DVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG-ITEPEIIAPVTAH 168 (497)
T ss_dssp TSSCBTTCT-TTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC-CSSCEEEEETTSC
T ss_pred HhhcCCCCc-ccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC-CCCceEEEeCCcc
Confidence 344577777 778999999999999999999998 3 3455666777776777766543221 12 2347999999999
Q ss_pred cccHHHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 93 GTNPASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 93 g~~~~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+++...++..|++++.+|+++ ++.+|+++|+++++ +++++|++++|| ++|.+. |+++|+++|+++|+++|+|++
T Consensus 169 ~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~livD~a 244 (497)
T 3mc6_A 169 AGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIAD-DIEGLGKIAQKYKLPLHVDSC 244 (497)
T ss_dssp HHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCC-SCTTTTTHHHHTTCCEEEETT
T ss_pred HHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCC-CHHHHHHHHHHhCCEEEEECc
Confidence 988888889999999999987 78999999999998 789999999996 899998 799999999999999999999
Q ss_pred Ccccc---------ccc--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 171 NMNAQ---------VGL--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 171 ~~~~~---------~~~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
+.... +.+ ......|+|+++.++||++. ||+++|+++++++..
T Consensus 245 ~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~ 298 (497)
T 3mc6_A 245 LGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGF-----APKGSSVIMYRNSDL 298 (497)
T ss_dssp TTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTC-----CCSSCEEEECSSHHH
T ss_pred chhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcC-----CCCCceeEEecCHHH
Confidence 74211 111 23345689999999999875 356899999986443
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=193.56 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=128.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH-------
Q psy7357 30 RGYEQLIGELETDLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS------- 98 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~------- 98 (302)
++..++.+++++++++++|++. +++++++|++++++++.++. ++||+|+++++.|+++...
T Consensus 86 ~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~~~~~ 157 (483)
T 1rv3_A 86 EHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFMTDKK 157 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCBCSSC
T ss_pred hhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhhhccc
Confidence 3456677788899999999985 56899999977766666653 7899999999999877531
Q ss_pred -HHhCC--CEEEEeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 99 -AQMAG--MSVEPVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 99 -~~~~g--~~v~~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~ 173 (302)
+...| ++++.++++ +++.+|+++|++++++ ++|++|++ ++ |++ .+. |+++|+++|+++|+++++|++|..
T Consensus 158 ~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~--~~tklIi~-~~sn~~-~~~-dl~~i~~ia~~~g~~livD~ah~~ 232 (483)
T 1rv3_A 158 KISATSIFFESMAYKVNPDTGYIDYDRLEENARL--FHPKLIIA-GTSCYS-RNL-DYGRLRKIADENGAYLMADMAHIS 232 (483)
T ss_dssp BCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH--HCCSEEEE-CCSSCC-SCC-CHHHHHHHHHHTTCEEEEECTTTH
T ss_pred CcccccceEEEEECccccCCCcCCHHHHHHHHhh--cCCcEEEE-eCCcCC-CcC-CHHHHHHHHHHcCCEEEEEccchh
Confidence 12223 566666666 5688999999999974 46777888 65 454 667 799999999999999999999864
Q ss_pred cccc--c-CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 174 AQVG--L-CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 174 ~~~~--~-~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
++.. . ..|.. ++|++++++||+|+ ||++|++++++++.
T Consensus 233 g~~~~~~~~~p~~-~~div~~s~~K~l~------GprgG~i~~~~~~~ 273 (483)
T 1rv3_A 233 GLVVAGVVPSPFE-HCHVVTTTTHKTLR------GCRAGMIFYRRGVR 273 (483)
T ss_dssp HHHHHTSSCCGGG-TCSEEEEESSGGGC------CCSCEEEEEECSBC
T ss_pred cccccCCCCCCCC-CCcEEEecCcccCC------CCCceEEEEcchhh
Confidence 4322 1 12221 68999999999985 78889999998643
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=197.22 Aligned_cols=236 Identities=16% Similarity=0.164 Sum_probs=146.1
Q ss_pred HHHHHHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--------HHHhCCC-
Q psy7357 38 ELETDLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--------SAQMAGM- 104 (302)
Q Consensus 38 e~~~~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--------~~~~~g~- 104 (302)
+.++++++++|++. +++++++|+.|+.++++++. ++||+|+++++.|+.|.. .+...|.
T Consensus 104 ~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~ 175 (490)
T 2a7v_A 104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF 175 (490)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------CSCEECCC--------------------------
T ss_pred HHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--------CCCCEecccCccccccccchhhhcchhHHHcCCe
Confidence 44599999999987 67888899988877777764 789999999999876532 1223443
Q ss_pred -EEEEeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc---ccC
Q psy7357 105 -SVEPVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV---GLC 179 (302)
Q Consensus 105 -~v~~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~---~~~ 179 (302)
+++.++++ +++.+|+++|++++.++ ++++|++++|++ |... |+++|+++|+++|+++++|++|..++. ...
T Consensus 176 ~~~~~~~vd~~~~~iD~d~le~~l~~~--~~klIi~~~s~~-~~~~-dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~ 251 (490)
T 2a7v_A 176 FESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTSAY-ARLI-DYARMREVCDEVKAHLLADMAHISGLVAAKVIP 251 (490)
T ss_dssp -----CCBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSSC-CSCC-CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred EEEEecccccccCCcCHHHHHHHHhhc--CCcEEEEcCCCC-CCcc-cHHHHHHHHHHcCCEEEEccccccccccCCcCC
Confidence 45555665 46899999999999743 456677766553 5667 799999999999999999999864432 122
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC---------------CCCCCCCcccC--CCCcchhhhHHHHh
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL---------------APFLPVHPLSS--IDSSIGAVSAAHYG 242 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l---------------~~~lpg~~~~~--~~~~l~~~~a~~~~ 242 (302)
.|.. ++|++++++||+|+ ||++|++++++++ .+++...+++. +......++ +...
T Consensus 252 ~~~~-~aDiv~~S~hK~l~------Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~ia-Ala~ 323 (490)
T 2a7v_A 252 SPFK-HADIVTTTTHKTLR------GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIA-AVAV 323 (490)
T ss_dssp CGGG-TCSEEEEESSGGGC------SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHH-HHHH
T ss_pred CCCC-CCCEEEECCcccCc------cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHH-HHHH
Confidence 3332 68999999999985 6888999998753 22222111110 111222222 2332
Q ss_pred hHhhH-HHH-HHH----------HH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 243 SASIL-PIS-WAY----------IR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 243 ~~~~~-~~~-~~y----------~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
++... ... ..| +. .|. .|++++.+++. +|.+++++++ .|++.+++.+.|.+
T Consensus 324 Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~----t~lv~vdl~~----~g~~~~~~~~~L~~ 388 (490)
T 2a7v_A 324 ALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTD----NHLVLVDLRP----KGLDGARAERVLEL 388 (490)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS----SSEEEEECTT----TTCCHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCC----CeEEEEEeCC----CCCCHHHHHHHHHh
Confidence 32211 111 122 22 565 58988754444 8999999874 36788888887753
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-20 Score=181.71 Aligned_cols=187 Identities=18% Similarity=0.181 Sum_probs=147.6
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCCe---ee--EeeCchHHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCCCCc
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYDK---IS--FQPNSGAQGEYAGLRAIQCYHQA-QDAHHRNVCLIPVSAHG 93 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~--~~~~~Ga~a~~a~l~a~~~~~~~-~g~~~~d~Vlv~~~~hg 93 (302)
.+++++ ..+++..++..++++++++++|++. .. +.+++|++++..++.+++..... .| .++|+|+++.+.|+
T Consensus 126 ~~~~~~-~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g-~~~d~Vi~~~~~~~ 203 (514)
T 3mad_A 126 SNPLHP-DLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG-ITAPEAVVPVSAHA 203 (514)
T ss_dssp CCTTCT-TTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC-CSSCEEEEETTSCT
T ss_pred cCCccc-ccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC-CCCCeEEEeCccch
Confidence 445555 5678888999999999999999983 33 66677778776777776643211 12 23489999999999
Q ss_pred ccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 94 TNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 94 ~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
++...++..|++++.+|+++++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|+++|+++|+++|+|+++.
T Consensus 204 ~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~i~livDea~~ 279 (514)
T 3mad_A 204 AFDKAAQYFGIKLVRTPLDADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVD-PIPEIAALAAEHGIGCHVDACLG 279 (514)
T ss_dssp HHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCcccc-CHHHHHHHHHHhCCeEEEecccc
Confidence 8888888889999999998889999999999998 789999999995 799998 79999999999999999999874
Q ss_pred ccc-------cc---cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 173 NAQ-------VG---LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 173 ~~~-------~~---~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
... +. .......++|++++++||++. ||+++|+++++++.
T Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~ 329 (514)
T 3mad_A 280 GFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGY-----GAKGTSVILYRRPD 329 (514)
T ss_dssp TTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTC-----CCSSCEEEEESSHH
T ss_pred cccchhHHhcCCCCCcccccCCCCcEEEECchhccC-----CCCCeEEEEEeCHH
Confidence 211 10 112345689999999999975 34688999998643
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-21 Score=176.75 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc--cHHHHHhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYD-KISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT--NPASAQMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~--~~~~~~~~g~~v~ 107 (302)
..+...++++++++++|.+ ..++ .+++|++|+..++.++. +++|+|+++++.|.+ +...++..|++++
T Consensus 51 ~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 122 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV--------SKGGKVLVTIIGAFGKRYKEVVESNGRKAV 122 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh--------cCCCeEEEEcCCchhHHHHHHHHHhCCceE
Confidence 4688999999999999997 4434 45566666655555442 678999999999876 5556778899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.+|.++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .+...+++
T Consensus 123 ~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~~~~~~~ 199 (386)
T 2dr1_A 123 VLEYEPGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLN-PLPELAKVAKEHDKLVFVDAVSAMGGAD-IKFDKWGL 199 (386)
T ss_dssp EEECCTTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBC-CCTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhC-CHHHHHHHHHHcCCeEEEEccccccCcc-ccccccCC
Confidence 9999888889999999999532 57899999997 6899998 7999999999999999999997544322 23456688
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+++.++||+|+.| +|+|++++++++++.+
T Consensus 200 di~~~s~sK~~~~~-----~g~G~~~~~~~~~~~~ 229 (386)
T 2dr1_A 200 DVVFSSSQKAFGVP-----PGLAIGAFSERFLEIA 229 (386)
T ss_dssp SEEEEETTSTTCCC-----SSCEEEEECHHHHHHH
T ss_pred cEEEEeccccccCC-----CceEEEEECHHHHHHH
Confidence 99999999999843 2589999998776554
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=180.90 Aligned_cols=183 Identities=8% Similarity=-0.055 Sum_probs=140.0
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHhCCCee------eEeeCchHHHHHHHHHHHHHHHHh----hcCC-CCCEEEEcCC
Q psy7357 22 PFIPQDQARGYEQLIGELETDLCEITGYDKI------SFQPNSGAQGEYAGLRAIQCYHQA----QDAH-HRNVCLIPVS 90 (302)
Q Consensus 22 py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~------~~~~~~Ga~a~~a~l~a~~~~~~~----~g~~-~~d~Vlv~~~ 90 (302)
++++ +.+++..++.+++++++++++|++.. .+...+|++|+..++++++..+.. .|.. .+++|++++
T Consensus 70 ~~~~-~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~- 147 (452)
T 2dgk_A 70 WIDK-EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP- 147 (452)
T ss_dssp TTCT-TTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-
T ss_pred CCCh-hhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-
Confidence 4444 56789999999999999999999864 345556667665666555432111 1100 236899999
Q ss_pred CCcccHHHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh------C
Q psy7357 91 AHGTNPASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH------G 162 (302)
Q Consensus 91 ~hg~~~~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~------g 162 (302)
.|.++...++..|++++.+|+++ ++.+|+++|+++|+ ++|++|++++| |++|.+. |+++|+++|+++ |
T Consensus 148 ~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~ 223 (452)
T 2dgk_A 148 VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE-FPQPLHDALDKFQADTGID 223 (452)
T ss_dssp CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC-CHHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHh---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHHhhccCCC
Confidence 88887788889999999999987 78999999999998 78999999999 5899999 899999999996 9
Q ss_pred CEEEEecCCcccccc-cC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 163 GQVYLDGANMNAQVG-LC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 163 ~llivD~a~~~~~~~-~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+++++|+++...... +. .....++|++++++||++. +|+++|++++++
T Consensus 224 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~-----~~~~~G~~~~~~ 277 (452)
T 2dgk_A 224 IDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGL-----APLGCGWVIWRD 277 (452)
T ss_dssp CCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC-----CCSSCEEEEESS
T ss_pred CcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccC-----CCCCeEEEEEcC
Confidence 999999997432210 01 1113378999999999764 457999999975
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-20 Score=173.60 Aligned_cols=181 Identities=13% Similarity=0.243 Sum_probs=142.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~ 104 (302)
..+..+...++++++++++|.+..++ ..++|++|+.+++.++..++ .+++|+|+++++.|+++...+ ...|+
T Consensus 63 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 138 (423)
T 3lvm_A 63 GWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY----QKKGKHIITSKTEHKAVLDTCRQLEREGF 138 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH----TTTCCEEEEETTSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhh----ccCCCEEEECCccchHHHHHHHHHHHcCC
Confidence 34667888999999999999986444 45556677666666555322 136899999999988775544 56699
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .....
T Consensus 139 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~-~~~~~ 213 (423)
T 3lvm_A 139 EVTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQ-DIAAIGEMCRARGIIYHVDATQSVGKLP-IDLSQ 213 (423)
T ss_dssp EEEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSC-CCTTT
T ss_pred EEEEeccCCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEEhhhhcCCCC-cChhh
Confidence 99999998889999999999998 78999999998 5899998 7999999999999999999997543322 23455
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
+++|+++.++||+++ ++++|+++++++..+.+...
T Consensus 214 ~~~di~~~s~sK~~g------~~g~G~~~~~~~~~~~~~~~ 248 (423)
T 3lvm_A 214 LKVDLMSFSGHKIYG------PKGIGALYVRRKPRVRIEAQ 248 (423)
T ss_dssp SCCSEEEEESTTTTS------CSSCEEEEECBTTBCCCCCS
T ss_pred cCCCEEEechHHhcC------CCCeEEEEEeccccCCCCcc
Confidence 689999999999653 34699999998777666543
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=181.14 Aligned_cols=174 Identities=13% Similarity=0.116 Sum_probs=138.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeee--EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc--cHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKIS--FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT--NPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~--~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~--~~~~~~~~g~~ 105 (302)
....+...++++++++++|.+... +..++|++|+.+++.++. +++|+|+++++.|.+ +...++..|.+
T Consensus 42 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~ 113 (411)
T 3nnk_A 42 PAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDKVLVPVFGRFGHLLCEIARRCRAE 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCEEEEecCCchHHHHHHHHHHcCCe
Confidence 345678899999999999997643 455566776655555542 689999999998865 45567788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|+++|++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+... .....+
T Consensus 114 ~~~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~-~~~~~~ 189 (411)
T 3nnk_A 114 VHTIEVPWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQ-PLAELGEICRRYDALFYTDATASLGGNP-LETDVW 189 (411)
T ss_dssp EEEEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTBTTBC-CCTTTT
T ss_pred EEEEecCCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceec-cHHHHHHHHHHcCCEEEEECCcccCCcc-cchhcc
Confidence 99999988889999999999983 27889999997 6899998 7999999999999999999997543322 234566
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++|+++.+.||+|+. ++|+|+++++++++++
T Consensus 190 ~~d~~~~s~~K~l~~-----~~g~g~~~~~~~~~~~ 220 (411)
T 3nnk_A 190 GLDAVSAGMQKCLGG-----PSGTSPITLSARMEEA 220 (411)
T ss_dssp TCSEEECCSTTTTCC-----CSSEEEEEECHHHHHH
T ss_pred CCcEEEecCccccCC-----CCceEEEEECHHHHHH
Confidence 899999999999863 3578999998766543
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=186.22 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhCCCeeeEe--eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHH-----------HHHh
Q psy7357 36 IGELETDLCEITGYDKISFQ--PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPA-----------SAQM 101 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~--~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~-----------~~~~ 101 (302)
.+++++.+++++|.+.+.++ .++|++|+.+++.++. ++||+|++++ +.|+.+.. .++.
T Consensus 75 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 146 (427)
T 3i16_A 75 RDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL--------RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKE 146 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC--------CTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGG
T ss_pred HHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh--------CCCCEEEEeCCCccHHHHHHHhccccchHHHHHH
Confidence 78889999999999988664 6788887756555543 6899999998 88877653 3356
Q ss_pred CCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec----C-CCceeccccHHHHHHHHHH--hCCEEEEecCCccc
Q psy7357 102 AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY----P-STFGVFEENITDVCELIHE--HGGQVYLDGANMNA 174 (302)
Q Consensus 102 ~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~----P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~ 174 (302)
.|++++.+|.+++|.+|+++++++++++ ++|++|++++ | |++|.+. |+++|+++||+ +|+++++|.++...
T Consensus 147 ~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~-dl~~i~~la~~~~~g~~livD~a~~~~ 224 (427)
T 3i16_A 147 FGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIE-DIKSIVDCVKNIRKDIICFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHH-HHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred cCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHH-HHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 7999999999888999999999999842 5799999999 8 5899998 89999999999 99999999987433
Q ss_pred ccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 175 QVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.. ...|..+++|++++++||+|+.+ |.|++|++++++++++++..
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg~---g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 225 MD-TKEPTDVGADLIAGSLIKNIGGG---IAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp SS-SSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHH
T ss_pred cc-cCCccccCCeEEEecCcccCCCC---CCceEEEEEECHHHHHHHHH
Confidence 21 24566789999999999998732 22788999999888877655
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-21 Score=176.48 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=137.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe--eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc--HHHHHhCCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDK--ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN--PASAQMAGM 104 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~--~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~--~~~~~~~g~ 104 (302)
....+...++++++++++|.+. .++. .++|++++. ++.++. +++|+|+++++.|.++ ...++..|.
T Consensus 31 ~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~ 101 (384)
T 3zrp_A 31 KEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL--------KPNDKILVVSNGVFGDRWEQIFKRYPV 101 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC--------CTTCEEEEECSSHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc--------CCCCEEEEecCCcchHHHHHHHHHcCC
Confidence 4557889999999999999986 5444 445556554 443332 6889999998877443 234567899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.+|+++++.+|+++|++++++ .++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .....
T Consensus 102 ~~~~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~~~~ 177 (384)
T 3zrp_A 102 NVKVLRPSPGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVRE-PVKDVINKIRKYVELIVVDGVSSVGAEE-VKAEE 177 (384)
T ss_dssp EEEEECCSTTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEEC-CHHHHHHHHGGGEEEEEEECTTTTTTSC-CCTTT
T ss_pred cEEEecCCCCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceEC-cHHHHHHHHHhcCCEEEEECcccccCcc-ccccc
Confidence 999999988889999999999983 27999999998 6899998 7999999999999999999987543322 23445
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|++++++||+|+. ++|+|++++++++++.+
T Consensus 178 ~~~d~~~~s~~K~~~~-----~~g~g~~~~~~~~~~~~ 210 (384)
T 3zrp_A 178 WNVDVYLTASQKALGS-----AAGLGLLLLSPKALSIL 210 (384)
T ss_dssp TTCSEEEEETTSTTCC-----CSSEEEEEECHHHHHHH
T ss_pred cCCCEEEecCcccccC-----CCceEEEEECHHHHHHh
Confidence 6899999999999973 36799999998876655
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-21 Score=176.74 Aligned_cols=172 Identities=18% Similarity=0.175 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHhCCCee-eEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc--cHHHHHhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYDKI-SFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT--NPASAQMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~-~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~--~~~~~~~~g~~v~ 107 (302)
..+.+.++++++++++|.+.. ++.. .+|++|+..++.++. +++|+|+++++.|.. +...++..|++++
T Consensus 65 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 136 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGRYGADVR 136 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc--------CCCCEEEEEcCChhHHHHHHHHHHcCCceE
Confidence 567889999999999999754 4444 455566655555442 678999999998877 5566778899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
.+|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .....++
T Consensus 137 ~v~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~ 211 (393)
T 1vjo_A 137 TISKPWGEVFSLEELRTALE---THRPAILALVHAETSTGARQ-PLEGVGELCREFGTLLLVDTVTSLGGVP-IFLDAWG 211 (393)
T ss_dssp EEECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTTTTSC-CCTTTTT
T ss_pred EEecCCCCCCCHHHHHHHHh---hCCceEEEEeccCCCcceec-cHHHHHHHHHHcCCEEEEECCccccCcC-CcccccC
Confidence 99998888899999999998 4 7788999998 6899998 7999999999999999999998643222 1234567
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++.++||+|+.| | |+|++++++++++.+
T Consensus 212 ~di~~~s~sK~l~~~----~-~~G~l~~~~~~~~~~ 242 (393)
T 1vjo_A 212 VDLAYSCSQKGLGCS----P-GASPFTMSSRAIEKL 242 (393)
T ss_dssp CSEEECCSSSTTCSC----S-SCEEEEECHHHHHHH
T ss_pred ccEEEEcCcccccCC----C-ceEEEEECHHHHHHH
Confidence 899999999999754 3 789999998765544
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-20 Score=169.12 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=141.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeee-EeeCchHHHHHHHHHHHHHHHHhh-----cCCCCCEEEEcCCCCcccHHHHHhC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKIS-FQPNSGAQGEYAGLRAIQCYHQAQ-----DAHHRNVCLIPVSAHGTNPASAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~-~~~~~Ga~a~~a~l~a~~~~~~~~-----g~~~~d~Vlv~~~~hg~~~~~~~~~ 102 (302)
+++..+...++++++++++|.+..+ +.+++|++|+..++.+++..+... +..++|+|+++++.|+++...++..
T Consensus 64 ~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~ 143 (397)
T 3f9t_A 64 FKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM 143 (397)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHc
Confidence 4578889999999999999998754 455666677766666655321100 1135899999999999888888888
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC- 179 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~- 179 (302)
|++++.+|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++........
T Consensus 144 g~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~ 219 (397)
T 3f9t_A 144 DLEYIYAPIKEDYTIDEKFVKDAVE---DYDVDGIIGIAGTTELGTID-NIEELSKIAKENNIYIHVDAAFGGLVIPFLD 219 (397)
T ss_dssp TCEEEEECBCTTSSBCHHHHHHHHH---HSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTGGGTGGGCC
T ss_pred CceeEEEeeCCCCcCCHHHHHHHHh---hcCCeEEEEECCCCCCCCCC-CHHHHHHHHHHhCCeEEEEccccchhhhhcc
Confidence 9999999998889999999999998 5 7889999998 5899998 799999999999999999998743211110
Q ss_pred ---------CCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCC-CCCCC
Q psy7357 180 ---------RPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH-LAPFL 221 (302)
Q Consensus 180 ---------~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~-l~~~l 221 (302)
.+-.. ++|+++.+.||+++. |.++|+++++++ +.+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~-----~~~~g~~~~~~~~~~~~~ 268 (397)
T 3f9t_A 220 DKYKKKGVNYKFDFSLGVDSITIDPHKMGHC-----PIPSGGILFKDIGYKRYL 268 (397)
T ss_dssp GGGCCTTCCCCCSGGGTCSEEECCTTTTTCC-----CSSCEEEEESSGGGGGGT
T ss_pred cccccccccccccccccCCeEEEccccccCC-----CCCceEEEEeCHHHHHhh
Confidence 01111 789999999998753 347888888754 44433
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=171.12 Aligned_cols=173 Identities=13% Similarity=0.230 Sum_probs=134.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~ 104 (302)
..+..+.+.++++++++++|.+..++..+ +|++++..++.++.... .+++|+|+++++.|+++...+ +..|+
T Consensus 38 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~g~ 113 (382)
T 4hvk_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN----ARKGKHILVSAVEHMSVINPAKFLQKQGF 113 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHH----GGGCCEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhh----cCCCCEEEECCCCcHHHHHHHHHHHhcCC
Confidence 45677889999999999999986655444 44466655555443211 146899999999988776543 35799
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+ +++|+++..+.... ....
T Consensus 114 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~-li~D~a~~~~~~~~-~~~~ 187 (382)
T 4hvk_A 114 EVEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAA-LHIDATASVGQIEV-DVEK 187 (382)
T ss_dssp EEEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHSSSSE-EEEECTTTBTTBCC-CHHH
T ss_pred EEEEeccCCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeC-CHHHHHHHHHHcCE-EEEEhHHhcCCCCC-Cchh
Confidence 99999999889999999999998 78999999998 5899998 79999999999999 99999875433221 2234
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+++|+++.+.||+++ ++|+|+++++++.
T Consensus 188 ~~~d~~~~s~~K~~g------~~g~g~~~~~~~~ 215 (382)
T 4hvk_A 188 IGADMLTISSNDIYG------PKGVGALWIRKEA 215 (382)
T ss_dssp HTCSEEEEESGGGTS------CTTCEEEEEETTC
T ss_pred cCCCEEEEeHHHhcC------CCceEEEEEcCcc
Confidence 578999999999653 3468999998754
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=186.88 Aligned_cols=187 Identities=15% Similarity=0.129 Sum_probs=141.5
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHH----HhhcC--CCCCEEEEcCCCCcccHHHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYH----QAQDA--HHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~----~~~g~--~~~d~Vlv~~~~hg~~~~~~ 99 (302)
+.+++..++..++++++++++|++..++ ...+|++|++.++.+++.+. ...|. .++.+|++++..|+++...+
T Consensus 141 ~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~ 220 (515)
T 2jis_A 141 EIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGA 220 (515)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHH
Confidence 6788999999999999999999975444 44556676656666554321 11110 01228999999998888878
Q ss_pred HhCCC---EEEEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 100 QMAGM---SVEPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 100 ~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
+..|. +++.+|+++++.+|+++|+++|++. ..++++|++++| |++|.+. |+++|+++|+++|+++|+|+++.
T Consensus 221 ~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~l~~I~~la~~~g~~l~vD~a~~ 299 (515)
T 2jis_A 221 AFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-PLEAIADVCQRHGLWLHVDAAWG 299 (515)
T ss_dssp HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTG
T ss_pred HHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHHHcCCeEEEehhhh
Confidence 87787 9999999888999999999999742 125899999998 5899999 79999999999999999999875
Q ss_pred ccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC--CCC
Q psy7357 173 NAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH--LAP 219 (302)
Q Consensus 173 ~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~--l~~ 219 (302)
.+..... -.+..++|++++++||+|+.| .++|+++++++ +.+
T Consensus 300 ~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-----~g~G~l~~~~~~~~~~ 348 (515)
T 2jis_A 300 GSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-----LQCSALLLQDTSNLLK 348 (515)
T ss_dssp GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESCCSCHHH
T ss_pred hHHHhChhhHhhcCCCccCCEEEECcccccCCC-----CCeeEEEEeChHHHHH
Confidence 3332211 012247899999999998744 25899999876 544
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=168.64 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVE 107 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~ 107 (302)
.+...++++.+++++|.+..++ ...+|++++.+++.+++ + +++|+|+++++.|+++.. .++..|.+++
T Consensus 58 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~--~-----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 130 (390)
T 1elu_A 58 QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD--W-----HQGDEILLTDCEHPGIIAIVQAIAARFGITYR 130 (390)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC--C-----CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC--C-----CCCCEEEEecCcccHHHHHHHHHHHHhCcEEE
Confidence 3677889999999999876444 45556666655554441 1 578999999999877653 2456799999
Q ss_pred EeecC--CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHH----HhCCEEEEecCCcccccccCC
Q psy7357 108 PVSVR--KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIH----EHGGQVYLDGANMNAQVGLCR 180 (302)
Q Consensus 108 ~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~----~~g~llivD~a~~~~~~~~~~ 180 (302)
.+|.+ +++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+ ++|+++|+|+++..+...+ .
T Consensus 131 ~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~-~ 205 (390)
T 1elu_A 131 FFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVL-PLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPL-D 205 (390)
T ss_dssp EECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCC-C
T ss_pred EEcCCCCCCccchHHHHHHhcC---CCceEEEEeccccCCceec-CHHHHHHHHhhhhhhcCcEEEEEcccccCCcCC-C
Confidence 99987 567899999999997 78999999998 5899998 7999999999 9999999999986433222 2
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
...++.|+++.++||++. ||+|+|++++++++++.+..
T Consensus 206 ~~~~~~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~ 243 (390)
T 1elu_A 206 FSRLEVDYYAFTGHKWFA-----GPAGVGGLYIHGDCLGEINP 243 (390)
T ss_dssp TTTSCCSEEEEESSSTTC-----CCTTCEEEEECTTTGGGCCC
T ss_pred hhhcCCCEEEcccccccc-----CCCceEEEEECHHhHhhcCC
Confidence 235678999999999765 35689999999988877654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.1e-21 Score=175.59 Aligned_cols=177 Identities=18% Similarity=0.284 Sum_probs=139.1
Q ss_pred cHHHHHHHHHHH-HHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 31 GYEQLIGELETD-LCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 31 G~l~~~~e~~~~-l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
+..+...++++. +++++|.+ ..+..++|++|+..++.++. +++|+|+++++.|+++...++..|++++.+
T Consensus 50 ~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v 120 (371)
T 2e7j_A 50 IKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERAGLNIALV 120 (371)
T ss_dssp ---CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHh--------CCCCEEEEccCcchHHHHHHHHcCCeEEEe
Confidence 344567889999 99999998 43444444566655555542 678999999999988777788999999999
Q ss_pred e--cCCCCCCCHHHHHHHHhccC--CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 110 S--VRKDGTIDFSDLETKVKKNK--ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 110 ~--~~~~g~iD~~~l~~~i~~~~--~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
| .++++.+|+++|+++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .+...+
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~-~~~~~~ 198 (371)
T 2e7j_A 121 PKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP-DVKKIAKVCSEYDVPLLVNGAYAIGRMP-VSLKEI 198 (371)
T ss_dssp CCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTTBTTBC-CCHHHH
T ss_pred ecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccC-CHHHHHHHHHHcCCeEEEECccccCCCC-CChhhc
Confidence 9 87778999999999997432 47899999999 6899998 7999999999999999999987543322 123456
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC-CCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF-LPV 223 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~-lpg 223 (302)
+.|+++.++||+|+.| +++|+++++++++++ +..
T Consensus 199 ~~di~~~s~sK~~~~~-----~~~G~~~~~~~~~~~~~~~ 233 (371)
T 2e7j_A 199 GADFIVGSGHKSMAAS-----GPIGVMGMKEEWAEIVLRR 233 (371)
T ss_dssp TCSEEEEEHHHHSSCC-----SSCEEEEECTTTTTTTTCB
T ss_pred CCCEEEecCCcCCCCC-----CCcEEEEEechhhhhhccc
Confidence 7899999999999742 489999999988776 643
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-19 Score=164.57 Aligned_cols=177 Identities=14% Similarity=0.215 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~~v 106 (302)
+..+...++++.+++++|++...+. ..+|++|+..++.++... . .+++|+|+++++.|+++...+ +..|.++
T Consensus 41 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~---~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~ 116 (384)
T 1eg5_A 41 EANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAET---F-EKRKRTIITTPIEHKAVLETMKYLSMKGFKV 116 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHH---T-TTTCCEEEECTTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhh---c-cCCCCEEEECCCCchHHHHHHHHHHhcCCEE
Confidence 4567788999999999998754444 455566665555554311 0 146899999999987665443 6789999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC--CEEEEecCCcccccccCCCCc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG--GQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g--~llivD~a~~~~~~~~~~p~~ 183 (302)
+.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++| +++|+|+++..+.... ....
T Consensus 117 ~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~-~~~~ 191 (384)
T 1eg5_A 117 KYVPVDSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQ-PVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-SLEK 191 (384)
T ss_dssp EECCBCTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-CCTT
T ss_pred EEEccCCCCccCHHHHHHHhC---CCCeEEEEECCCCCccccc-CHHHHHHHHHhcCCceEEEEEhhhhcCCccc-Cchh
Confidence 999998888899999999998 68999999998 5899998 7999999999999 9999999975332211 2334
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC--CCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL--APFLP 222 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l--~~~lp 222 (302)
++.|++++++||+++. +|+|++++++++ .+.+.
T Consensus 192 ~~~di~~~s~sK~~g~------~G~G~~~~~~~~~~~~~~~ 226 (384)
T 1eg5_A 192 LEVDYASFSAHKFHGP------KGVGITYIRKGVPIRPLIH 226 (384)
T ss_dssp TCCSEEEEEGGGGTSC------TTCEEEEECTTSCCCCSBC
T ss_pred cCCCEEEecHHHhcCC------CceEEEEEcCCCccccccc
Confidence 5789999999997642 358999999876 44443
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=173.39 Aligned_cols=174 Identities=10% Similarity=0.054 Sum_probs=133.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe--eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDK--ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGM 104 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~--~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~ 104 (302)
.+..+...++++++++++|.+. ..+. +++|++++..++.++. ++||+|+++++.+..+. ..+...|.
T Consensus 48 ~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~ 119 (376)
T 3f0h_A 48 TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKDKVLVIDGGSFGHRFVQLCEIHEI 119 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTCCEEEEESSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCCeEEEEeCChhhHHHHHHHHHcCC
Confidence 4566888999999999999873 3344 5566776655555443 67899998876443333 24567899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++...... .....
T Consensus 120 ~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~~~-~~~~~ 194 (376)
T 3f0h_A 120 PYVALKLEHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLY-DTMMIGEFCKKNNMFFVCDCVSAFLADP-FNMNE 194 (376)
T ss_dssp CEEEEECCTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSC-CCHHH
T ss_pred ceEEEeCCCCCCCCHHHHHHhhc---cCceEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEEcCccccCcc-ccccc
Confidence 99999998888999999999887 78999999987 6899999 7999999999999999999987433221 12234
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|+++.++||+|+. ++|+|++++++++.+++
T Consensus 195 ~~~d~~~~s~~K~l~~-----~~G~g~~~~~~~~~~~~ 227 (376)
T 3f0h_A 195 CGADVMITGSQKVLAC-----PPGISVIVLAPRGVERV 227 (376)
T ss_dssp HTCSEEEEETTTTTCC-----CSSCEEEEECHHHHHHH
T ss_pred cCccEEEecCcccccC-----CCceEEEEECHHHHHHh
Confidence 6789999999999973 36789999988765544
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=172.01 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=135.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCee--eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc--HHHHHhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKI--SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN--PASAQMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~--~~~~~~~g~~v 106 (302)
...+...++++++++++|.+.. .+..++|++|+.+++.++. +++|+|+++.+.|..+ ...++..|.++
T Consensus 53 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~ 124 (393)
T 3kgw_A 53 EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDSFLTGTNGIWGMRAAEIADRIGARV 124 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEEeCCchhHHHHHHHHHcCCce
Confidence 4557788999999999998753 3445667776655555442 6899999987664222 34567889999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|.++++.+|+++|++++++ .++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .....++
T Consensus 125 ~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~-~~~~~~~ 200 (393)
T 3kgw_A 125 HQMIKKPGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQ-PLDGFGELCHRYQCLLLVDSVASLGGVP-IYMDQQG 200 (393)
T ss_dssp EEEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTTTTSC-CCTTTTT
T ss_pred EEEeCCCCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhc-cHHHHHHHHHHcCCEEEEECCccccCcc-cchhhcC
Confidence 9999988889999999999983 27889999998 6899998 7999999999999999999987533222 2334568
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++.++||+|+. ++|+|++++++++++.+
T Consensus 201 ~d~~~~s~sK~~~~-----~~g~g~~~~~~~~~~~~ 231 (393)
T 3kgw_A 201 IDIMYSSSQKVLNA-----PPGISLISFNDKAKYKV 231 (393)
T ss_dssp CCEEEEESSSTTCC-----CSSCEEEEECHHHHHHH
T ss_pred CCEEEecCcccccC-----CCceeEEEECHHHHHHH
Confidence 89999999999863 35799999988765544
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-21 Score=177.84 Aligned_cols=174 Identities=15% Similarity=0.180 Sum_probs=138.6
Q ss_pred cHHHHHHHHHHHHHHHhCCCeee-E-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc--cHHHHHhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKIS-F-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT--NPASAQMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~-~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~--~~~~~~~~g~~v 106 (302)
...+...++++++++++|.+... + ..++|++++.+++.++. +++|+|+++++.|.+ ....++..|+++
T Consensus 41 ~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~ 112 (416)
T 3isl_A 41 AFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI--------EPEDDVLIPIYGRFGYLLTEIAERYGANV 112 (416)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc--------CCCCEEEEecCCcccHHHHHHHHhcCCee
Confidence 45688999999999999987653 3 55666676655555442 689999999988765 334577889999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|.++++.+|+++|++++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .....++
T Consensus 113 ~~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~~~~~~ 188 (416)
T 3isl_A 113 HMLECEWGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIH-PLKAIGEACRTEDALFIVDAVATIGGCE-VKVDEWK 188 (416)
T ss_dssp EEEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCHHHHHHHHHTTCEEEEECTTTTTTSC-CCTTTTT
T ss_pred EEEecCCCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceec-CHHHHHHHHHHcCCEEEEECCccccCCC-cchhhcC
Confidence 9999988899999999999974 36788999998 6899998 7999999999999999999987543322 2344578
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++.+.||+|.. ++|+|++++++++++++
T Consensus 189 ~d~~~~s~~K~l~g-----~~g~g~~~~~~~~~~~~ 219 (416)
T 3isl_A 189 IDAAIGGTQKCLSV-----PSGMAPITYNERVADVI 219 (416)
T ss_dssp CSEEECCSSSTTCC-----CSSEEEEEECHHHHHHH
T ss_pred CCEEEecCccccCC-----CCCeEEEEECHHHHHHh
Confidence 99999999999763 35789999998765444
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=170.00 Aligned_cols=175 Identities=14% Similarity=0.170 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHhCC-Cee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc----HHHHHhCCCEE
Q psy7357 33 EQLIGELETDLCEITGY-DKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN----PASAQMAGMSV 106 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~-~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~----~~~~~~~g~~v 106 (302)
.+...++++.+++++|. +.. .+...+|++|+..++.+++... .+++|+|+++++.|++. ...++..|+++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~ 146 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL 146 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcc----cCCCCEEEECcchhHHHHHHHHHHHHhcCcEE
Confidence 46678999999999998 443 3445556676656665552100 15789999999998874 33456789999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....++
T Consensus 147 ~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~ 221 (420)
T 1t3i_A 147 KFVQLDEQESFDLEHFKTLLS---EKTKLVTVVHISNTLGCVN-PAEEIAQLAHQAGAKVLVDACQSAPHYPL-DVQLID 221 (420)
T ss_dssp EEECBCTTSSBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHHT
T ss_pred EEeccCCCCCcCHHHHHHhhC---CCceEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEEhhhccCCccC-chhhcC
Confidence 999998888899999999998 78999999998 5899998 79999999999999999999875432211 223457
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.|+++.++||.++ ++|+|++++++++++++.
T Consensus 222 ~di~~~s~sK~~~------~~g~G~~~~~~~~~~~~~ 252 (420)
T 1t3i_A 222 CDWLVASGHKMCA------PTGIGFLYGKEEILEAMP 252 (420)
T ss_dssp CSEEEEEGGGTTS------CTTCEEEEECHHHHHHSC
T ss_pred CCEEEEehhhhcC------CCceEEEEEchHHHhhcC
Confidence 8999999999553 345899999987665553
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=171.69 Aligned_cols=169 Identities=18% Similarity=0.244 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhCCCee-eEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKI-SFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~-~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~~v~~i 109 (302)
+...++++.+++++|.+.. ++.. ++|++++..++.++. +++|+|+++++.|+++. ..++..|++++.+
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--------CCCCeEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 5688999999999999865 4544 445566645544442 67899999999988764 3567889999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+++|
T Consensus 123 ~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~~d 197 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIE---LHQPKCLFLTHGDSSSGLLQ-PLEGVGQICHQHDCLLIVDAVASLCGVPF-YMDKWEID 197 (396)
T ss_dssp ECCTTSCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTCC
T ss_pred cCCCCCCCCHHHHHHHHH---hCCCCEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEEccccccCCcc-chhhcCcC
Confidence 998888899999999998 4 6888999998 6899998 69999999999999999999986432221 33456789
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+++.+.||+++. ++|+|++++++++++.
T Consensus 198 ~~~~s~~K~~~~-----~~g~g~~~~~~~~~~~ 225 (396)
T 2ch1_A 198 AVYTGAQKVLGA-----PPGITPISISPKALDV 225 (396)
T ss_dssp EEECCCC-CCCC-----CSSCEEEEECHHHHHH
T ss_pred EEEEcCCccccC-----CCCeEEEEECHHHHHh
Confidence 999999999874 3678999998765443
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-19 Score=171.27 Aligned_cols=256 Identities=13% Similarity=0.074 Sum_probs=169.7
Q ss_pred ccccHHHHHHHHHHHHHHHhCCC--e----eeEeeCchHHHHHHHHHHHHH-HHHhh---cCC-CCCEEEEcCCCCcccH
Q psy7357 28 QARGYEQLIGELETDLCEITGYD--K----ISFQPNSGAQGEYAGLRAIQC-YHQAQ---DAH-HRNVCLIPVSAHGTNP 96 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~--~----~~~~~~~Ga~a~~a~l~a~~~-~~~~~---g~~-~~d~Vlv~~~~hg~~~ 96 (302)
.+.+..++..++++++++++|++ . ..+.+.+|++++..++++++. +...+ |.. .+++|+++++.|.++.
T Consensus 89 ~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~ 168 (502)
T 3hbx_A 89 EYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE 168 (502)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH
T ss_pred cChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH
Confidence 45678888899999999999998 2 223456677776555555443 21111 110 1238999999998888
Q ss_pred HHHHhCCCEEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHh------CCEEEEe
Q psy7357 97 ASAQMAGMSVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEH------GGQVYLD 168 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~------g~llivD 168 (302)
..++..|++++.+|++++ +.+|+++|+++++ ++|++|++++|| ++|.+. |+++|+++|+++ |+++++|
T Consensus 169 ~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~VD 244 (502)
T 3hbx_A 169 KFARYFEVELKEVKLSEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFE-DVKLLNDLLVEKNKETGWDTPIHVD 244 (502)
T ss_dssp HHHHHTTCEEEEECCBTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred HHHHHcCceeEEEecCCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCccc-CHHHHHHHHHHhhhccCCCCeEEEE
Confidence 888899999999999875 8999999999998 789999999985 899999 899999999999 9999999
Q ss_pred cCCccccc----c-c-CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCC-CCC---CCCcccC--------C
Q psy7357 169 GANMNAQV----G-L-CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLA-PFL---PVHPLSS--------I 229 (302)
Q Consensus 169 ~a~~~~~~----~-~-~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~-~~l---pg~~~~~--------~ 229 (302)
+|+..... . . ......++|++++++||++.. ++++|++++++ +.. +.+ +..+.+. +
T Consensus 245 ~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~-----p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~s 319 (502)
T 3hbx_A 245 AASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLV-----YAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFS 319 (502)
T ss_dssp CTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-----CSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCS
T ss_pred CCccchhhhhhCcccccccCCCCceEEEECcccccCC-----CCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCC
Confidence 99752221 1 1 011234789999999998864 35889888874 333 211 1111110 0
Q ss_pred CCcchhhhHHHHhhHhhH-HHHH-----------HHHH-HHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHH
Q psy7357 230 DSSIGAVSAAHYGSASIL-PISW-----------AYIR-RLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVD 294 (302)
Q Consensus 230 ~~~l~~~~a~~~~~~~~~-~~~~-----------~y~~-~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~ 294 (302)
.... .+. +.|.++..+ ...+ .|+. .|. ++++++.+++. ++.+.+++++ ..+++..+
T Consensus 320 r~~~-~~~-a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~----~~~v~f~~~~---~~~~~~~~ 390 (502)
T 3hbx_A 320 KGSS-QVI-AQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG----VPLVAFSLKD---SSCHTEFE 390 (502)
T ss_dssp CBSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS----SSEEEEEESS---CSSCCHHH
T ss_pred chHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC----ceEEEEEecC---CCcCCHHH
Confidence 1111 122 233332210 1111 2333 565 35888654344 7788888863 12367788
Q ss_pred HHHHhhc
Q psy7357 295 IAKRLMD 301 (302)
Q Consensus 295 ~~~~l~~ 301 (302)
+.++|.+
T Consensus 391 l~~~L~~ 397 (502)
T 3hbx_A 391 ISDMLRR 397 (502)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=167.91 Aligned_cols=173 Identities=16% Similarity=0.236 Sum_probs=130.7
Q ss_pred cHHHHHHHHHHHHHHHhCCC--eeeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc--HHHHHhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYD--KISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN--PASAQMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~--~~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~--~~~~~~~g~~ 105 (302)
...+...++++++++++|.+ ...+.. ++|++|+..++.++. + |+|+++++.|.++ ...++..|++
T Consensus 30 ~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---------~-d~vl~~~~~~~~~~~~~~~~~~g~~ 99 (353)
T 2yrr_A 30 EVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---------R-GPVLVLVNGAFSQRVAEMAALHGLD 99 (353)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---------C-CCEEEEECSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---------C-CcEEEEcCCCchHHHHHHHHHcCCc
Confidence 45577899999999999985 444444 445555533333321 2 7889988877664 2345678999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|+++|+++++++ ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+... .....+
T Consensus 100 ~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~D~a~~~~~~~-~~~~~~ 175 (353)
T 2yrr_A 100 PEVLDFPPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLN-PAEAIGALAKEAGALFFLDAVTTLGMLP-FSMRAM 175 (353)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSC-CCHHHH
T ss_pred eEEEeCCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceec-CHHHHHHHHHHcCCeEEEEcCccccccc-cccccc
Confidence 999999888889999999999831 7788999998 5899998 7999999999999999999998432211 122345
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|++++++||+++. ++|+|++++++++++++.
T Consensus 176 ~~d~~~~s~~K~~~~-----~~g~G~~~~~~~~~~~l~ 208 (353)
T 2yrr_A 176 GVDYAFTGSQKCLSA-----PPGLAPIAASLEARKAFT 208 (353)
T ss_dssp TCSEEECCTTSTTCC-----CSSCEEEEECHHHHHHCC
T ss_pred CceEEEecCcccccC-----CCceEEEEECHHHHHHhc
Confidence 789999999998863 356899999987765553
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=181.74 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=141.2
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHH----HhhcC--CCCCEEEEcCCCCcccHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYH----QAQDA--HHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~----~~~g~--~~~d~Vlv~~~~hg~~~~ 97 (302)
+.+.+..++.+++.+++++++|++. ..+++.+|+.|++.++.+++... ...|. .++++|++++..|.+...
T Consensus 128 ~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~ 207 (511)
T 3vp6_A 128 EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK 207 (511)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHH
Confidence 3467888888999999999999983 34556677777767766665421 11110 146789999999988888
Q ss_pred HHHhCCC---EEEEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 98 SAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 98 ~~~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.++..|. +++.+|+++++.+|+++|+++|++. ...+++|++++|+ ++|.++ |+++|+++|+++|+++|+|++
T Consensus 208 ~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd-~l~~I~~ia~~~~~~lhvD~a 286 (511)
T 3vp6_A 208 AGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAA 286 (511)
T ss_dssp HHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEET
T ss_pred HHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc-cHHHHHHHHHHcCCEEEEEcc
Confidence 8888888 9999999989999999999999742 1128899999984 899998 899999999999999999998
Q ss_pred CcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 171 NMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 171 ~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
+..+..... -.+..++|++++++||+|+.| ++.|+++++++
T Consensus 287 ~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-----~g~g~l~~~~~ 332 (511)
T 3vp6_A 287 WGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-----LQCSAILVKEK 332 (511)
T ss_dssp TGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESST
T ss_pred chhhHhhChhhhhhccCCccCCEEEECcccccCCC-----cCeEEEEEeCH
Confidence 754332111 113457899999999999865 36788888753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-20 Score=171.37 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH----HhCCCEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA----QMAGMSV 106 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~----~~~g~~v 106 (302)
..+...++++.+++++|.+...+..++| +.+...++.++.. ..+++|+|+++++.|+++.... +..|+++
T Consensus 67 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~-----~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v 141 (406)
T 3cai_A 67 SAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSS-----RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKV 141 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGG-----GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhh-----ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeE
Confidence 4577899999999999997544544445 4544333333310 0157899999999998764432 2369999
Q ss_pred EEeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 107 EPVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 107 ~~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
+.+|++ +++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+
T Consensus 142 ~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~ 216 (406)
T 3cai_A 142 KWAEVDIETGELPTWQWESLIS---KSTRLVAVNSASGTLGGVT-DLRAMTKLVHDVGALVVVDHSAAAPYRLL-DIRET 216 (406)
T ss_dssp EEECCCTTTCCCCGGGHHHHCC---TTEEEEEEESBCTTTCBBC-CCHHHHHHHHHTTCEEEEECTTTTTTCCC-CHHHH
T ss_pred EEEecCcccCCcCHHHHHHHhC---CCceEEEEeCCcCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCC-Cchhc
Confidence 999998 678899999999997 78999999998 5899998 79999999999999999999985432211 22346
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcce-eEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMG-PIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G-~l~~~~~l~~~lp 222 (302)
++|+++.++||+++ |++| ++++++++++++.
T Consensus 217 ~~d~~~~s~~K~~g-------~~~G~~~~~~~~~~~~l~ 248 (406)
T 3cai_A 217 DADVVTVNAHAWGG-------PPIGAMVFRDPSVMNSFG 248 (406)
T ss_dssp CCSEEEEEGGGGTS-------CSCEEEEESCHHHHHTSC
T ss_pred CCCEEEeehhhhcC-------CCcCeEEEEehHHHhhcC
Confidence 78999999999653 4588 9999987665553
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-19 Score=164.17 Aligned_cols=173 Identities=13% Similarity=0.242 Sum_probs=133.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~ 104 (302)
+.+..+...++++.+++++|.+..++ .+++|++|+..++.++..++. +++|+|+++++.|+++...+ +..|+
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 113 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQKQGF 113 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhcc----CCCCEEEECCCcchHHHHHHHHHHhCCc
Confidence 34667889999999999999975444 455566776566665542211 36889999999987765544 34799
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|++ |+|+++..+...+ ....
T Consensus 114 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~-i~D~a~~~g~~~~-~~~~ 187 (382)
T 4eb5_A 114 EVEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAAL-HIDATASVGQIEV-DVEK 187 (382)
T ss_dssp EEEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSEE-EEECTTTBTTBCC-CHHH
T ss_pred EEEEeccCCCCccCHHHHHHHhc---CCCeEEEEeccCCCccccC-CHHHHHHHHHHCCCE-EEEcchhcCCccc-Cccc
Confidence 99999998888899999999998 68999999998 5899998 799999999999999 9999986432211 1223
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+++|+++.++||+++ | +|+|+++++++.
T Consensus 188 ~~~di~~~s~sK~~g-~-----~g~G~~~~~~~~ 215 (382)
T 4eb5_A 188 IGADMLTISSNDIYG-P-----KGVGALWIRKEA 215 (382)
T ss_dssp HTCSEEEEETGGGTC-C-----SSCEEEEEETTC
T ss_pred cCCCEEEeehHHhcC-C-----CceEEEEEcccc
Confidence 578999999999753 2 368999998763
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=177.86 Aligned_cols=172 Identities=16% Similarity=0.098 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhCCCeeeEe--eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHH----------HHHhC
Q psy7357 36 IGELETDLCEITGYDKISFQ--PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPA----------SAQMA 102 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~--~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~----------~~~~~ 102 (302)
.+++++.+++++|.+.+.+. +++|+.|+.+++.++. ++||+|++++ +.|+.+.. .++..
T Consensus 61 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~ 132 (409)
T 3jzl_A 61 RDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL--------RPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDF 132 (409)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC--------CTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGG
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc--------CCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHc
Confidence 78889999999999987664 6788877655555543 6899999998 88877653 33567
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec----C-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccc
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY----P-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQ 175 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~----P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~ 175 (302)
|++++.+|.+++|.+|+++++++++ ++|++|++++ | |++|.+. |+++|+++||+ +|+++++|.++....
T Consensus 133 G~~~~~v~~~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~-~l~~I~~la~~~~~~~~livD~a~~~~~ 208 (409)
T 3jzl_A 133 HIGYSSVPLLENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIE-KIKEMIVFVKNINPEVIVFVDNCYGEFV 208 (409)
T ss_dssp TCEEEECCCCTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTTT
T ss_pred CCEEEEeCCCCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCccc-cHHHHHHHHHhhCCCCEEEEeCCccccc
Confidence 9999999998889999999999998 7899999999 8 5899998 89999999999 999999999864322
Q ss_pred cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 176 VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 176 ~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
. ...|..+++|++++++||+|+.+ |.|.+|++++++++++++..
T Consensus 209 ~-~~~p~~~g~Div~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~ 252 (409)
T 3jzl_A 209 E-YQEPPEVGADIIAGSLIKNPGGG---LAKTGGYIAGKEALVDLCGY 252 (409)
T ss_dssp S-SCCSGGGTCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHH
T ss_pred c-cCCccccCCeEEEECccccCCcc---CCceEEEEEeCHHHHHHHHH
Confidence 1 23577789999999999999732 22667999999887766543
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-20 Score=171.44 Aligned_cols=243 Identities=17% Similarity=0.131 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHH--hCCCEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQ--MAGMSV 106 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~--~~g~~v 106 (302)
..+....+++++++++|.+..++..++|++|+..++.++. ++||+|+++++.|+.+.. ... ..++++
T Consensus 69 ~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~ 140 (417)
T 3n0l_A 69 VDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALI--------NPGDKILGMDLSHGGHLTHGAKVSSSGKMYES 140 (417)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHS--------CTTCEEEEECC----------------CCSEE
T ss_pred HHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhc--------CCCCEEEecccccccccchhhhhhhhcceeee
Confidence 3445556777999999999887888999877655555543 689999999998876533 222 345677
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCc-c
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGD-Y 184 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~-~ 184 (302)
+.+++++++.+|+++|++++++ +++++|++++||+ |... |+++|.++|+++|+++|+|+++..+.... ..+.. .
T Consensus 141 ~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~ 216 (417)
T 3n0l_A 141 CFYGVELDGRIDYEKVREIAKK--EKPKLIVCGASAY-ARVI-DFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP 216 (417)
T ss_dssp EEECCCTTSSCCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT
T ss_pred EeccCCCCCCcCHHHHHHHHHh--cCCeEEEECCccc-CccC-CHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc
Confidence 7888877788999999999974 3678888888884 9888 79999999999999999999875333211 11111 1
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCCCCcc-cC-CCCcchhhhHHHHhhHhh------HH---HHH-
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLPVHPL-SS-IDSSIGAVSAAHYGSASI------LP---ISW- 251 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lpg~~~-~~-~~~~l~~~~a~~~~~~~~------~~---~~~- 251 (302)
++|++++++||+|+ ||++|+++++ +++.+.+..... +. ++.....++ +...++.. .. +..
T Consensus 217 ~~di~~~s~sK~l~------g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-a~~~a~~~~~~~~~~~~~~~~~~ 289 (417)
T 3n0l_A 217 YAHVVSSTTHKTLR------GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIA-AKAVGFKFNLSDEWKVYAKQVRT 289 (417)
T ss_dssp TCSEEEEESSTTTC------SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHH-HHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cceEEEeeCccccC------CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH
Confidence 47999999999884 6888999998 566555422111 11 111111222 12222111 00 000
Q ss_pred --HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 252 --AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 252 --~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
.|+. .|. .|+++...+.. .|.+.+++++ .|.+..++.+.|.+
T Consensus 290 ~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~l~~ 335 (417)
T 3n0l_A 290 NAQVLANVLMDRKFKLVSDGTD----NHLVLMSFLD----REFSGKDADLALGN 335 (417)
T ss_dssp HHHHHHHHHHHTTCEEGGGSCS----SSEEEEECTT----SSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCceeccCCCC----ceEEEEEccc----CCCCHHHHHHHHHH
Confidence 2222 455 47776543344 6778888763 25688888887764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=165.38 Aligned_cols=170 Identities=17% Similarity=0.165 Sum_probs=131.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~~v 106 (302)
.+..+...++++++++++|.+..++ .+++|++|+..++.++. ++||+|+++++.|.++. ..++..|+++
T Consensus 30 ~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~ 101 (352)
T 1iug_A 30 EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVLVPVYGKFSERFYEIALEAGLVV 101 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--------CCCCeEEEEeCCchhHHHHHHHHHcCCce
Confidence 3456778999999999999975444 45566666655555442 57899999999887764 2345689999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCCCc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~ 183 (302)
+.+|+++++.+|+++|++ +++++|++++| |++|.+. |+++|.++|+++ |+++|+|+++..+...+ ....
T Consensus 102 ~~v~~~~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-~~~~ 173 (352)
T 1iug_A 102 ERLDYPYGDTPRPEDVAK------EGYAGLLLVHSETSTGALA-DLPALARAFKEKNPEGLVGADMVTSLLVGEV-ALEA 173 (352)
T ss_dssp EEEECCTTCCCCTTTSCC------SSCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTCEEEEECTTTBTTBCC-CSGG
T ss_pred EEEeCCCCCCCCHHHHhc------cCCcEEEEEEecCCcceec-CHHHHHHHHHhhCCCCEEEEECCccccCcce-eccc
Confidence 999998888899988866 36778999998 6899998 799999999999 99999999985433222 2334
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+++|+++.+.||++..| +|+|+++++++++++
T Consensus 174 ~~~d~~~~s~~K~~~~~-----~g~G~~~~~~~~~~~ 205 (352)
T 1iug_A 174 MGVDAAASGSQKGLMCP-----PGLGFVALSPRALER 205 (352)
T ss_dssp GTCSEEEEESSSTTCCC-----SCEEEEEECHHHHHT
T ss_pred cCeeEEEecCcccccCC-----CceeEEEECHHHHHH
Confidence 57899999999988632 478999998775544
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=178.05 Aligned_cols=186 Identities=16% Similarity=0.128 Sum_probs=137.4
Q ss_pred cccccHHHHHHHHHHHHHHHhCCC--eee-EeeCchHHHHHHHHHHHHHHH----HhhcCC-CCC-EEEEcCCCCcccHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYD--KIS-FQPNSGAQGEYAGLRAIQCYH----QAQDAH-HRN-VCLIPVSAHGTNPA 97 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~--~~~-~~~~~Ga~a~~a~l~a~~~~~----~~~g~~-~~d-~Vlv~~~~hg~~~~ 97 (302)
+.+.+..++..++.+++++++|++ ... +...+|++|++.++.+++.+. ...|.. .++ +|++++..|.++..
T Consensus 125 ~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~ 204 (504)
T 2okj_A 125 EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK 204 (504)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHH
Confidence 446677777888889999999998 443 445566677666666655321 001100 014 78999999988887
Q ss_pred HHHhCCC---EEEEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 98 SAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 98 ~~~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.++..|. +++.+|+++++.+|+++|+++|++. ..++++|++++| |++|.+. |+++|+++|+++|+++|+|++
T Consensus 205 ~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~l~~I~~la~~~g~~lhvD~a 283 (504)
T 2okj_A 205 AGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAA 283 (504)
T ss_dssp HHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEET
T ss_pred HHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEehh
Confidence 7777766 8999999888999999999999732 126899999998 5899999 799999999999999999999
Q ss_pred Ccccccc-----cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCC
Q psy7357 171 NMNAQVG-----LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLA 218 (302)
Q Consensus 171 ~~~~~~~-----~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~ 218 (302)
+..+... ..-.+..++|+++.+.||+++.| .++|++++++ ++.
T Consensus 284 ~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-----~~~g~l~~~~~~~~ 332 (504)
T 2okj_A 284 WGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-----LQCSAILVKEKGIL 332 (504)
T ss_dssp TGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESSTTHH
T ss_pred hhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-----cceEEEEEECHHHH
Confidence 7533321 00123347899999999998754 3689999986 443
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=172.57 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHhCCCee-eE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYDKI-SF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~-~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~~v~ 107 (302)
..+...++++.+++++|.+.. ++ ..++|++|+..++.++. +++|+|+++++.|.++. ..++..|.+++
T Consensus 50 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 121 (393)
T 2huf_A 50 TLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL--------EDGDVILIGHTGHWGDRSADMATRYGADVR 121 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh--------CCCCEEEEECCCcchHHHHHHHHHcCCeeE
Confidence 457889999999999999763 44 44556666655554442 67899999999876643 23456899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
.+|+++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+.... ....++
T Consensus 122 ~v~~~~~~~~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~ 196 (393)
T 2huf_A 122 VVKSKVGQSLSLDEIRDALL---IHKPSVLFLTQGDSSTGVLQ-GLEGVGALCHQHNCLLIVDTVASLGGAPM-FMDRWE 196 (393)
T ss_dssp EEECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTT
T ss_pred EEeCCCCCCCCHHHHHHHHh---ccCCcEEEEEccCCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCc-chhhcC
Confidence 99998888899999999998 5 7888999998 5899998 69999999999999999999975433222 234567
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+|+++.+.||+|+. ++|+|++++++++++.
T Consensus 197 ~d~~~~s~sK~l~g-----~~G~G~~~~~~~~~~~ 226 (393)
T 2huf_A 197 IDAMYTGSQKVLGA-----PPGITPVSFSHRAVER 226 (393)
T ss_dssp CSEEECCSSSTTCC-----CSSCEEEEECHHHHHH
T ss_pred ccEEEECCCccccc-----CCCeEEEEECHHHHHH
Confidence 89999999999863 3567999998765544
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=172.95 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=134.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCCEEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGMSVE 107 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~~v~ 107 (302)
+..+...++++.+++++|.+...+.. ++|++++..++.++. +++|+|+++++.|.++. ..++..|++++
T Consensus 39 ~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 110 (392)
T 2z9v_A 39 AFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI--------SPDDVVLNLASGVYGKGFGYWAKRYSPHLL 110 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC--------CTTCCEEEEESSHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc--------CCCCEEEEecCCcccHHHHHHHHHcCCceE
Confidence 45567899999999999997544444 555566645544432 67899999999876553 23455799999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.+|+++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+++
T Consensus 111 ~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~~~ 187 (392)
T 2z9v_A 111 EIEVPYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTIN-PIDAIGALVSAHGAYLIVDAVSSFGGMKT-HPEDCKA 187 (392)
T ss_dssp EEECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBSC-CGGGGTC
T ss_pred EeeCCCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceec-cHHHHHHHHHHcCCeEEEEcccccCCccc-ccccccc
Confidence 9999888889999999999632 57889999998 5899998 79999999999999999999985432221 2234578
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+++.++||+++. ++|+|++++++++++++
T Consensus 188 d~~~~s~sK~~~~-----~~g~G~l~~~~~~~~~l 217 (392)
T 2z9v_A 188 DIYVTGPNKCLGA-----PPGLTMMGVSERAWAKM 217 (392)
T ss_dssp SEEEECSSSTTCC-----CSCCEEEEECHHHHHHH
T ss_pred eEEEecCcccccC-----CCceeEEEECHHHHHHh
Confidence 9999999998863 35789999998765443
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=176.17 Aligned_cols=173 Identities=17% Similarity=0.141 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHhCCCeeeEe--eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHH-----------HHHh
Q psy7357 36 IGELETDLCEITGYDKISFQ--PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPA-----------SAQM 101 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~--~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~-----------~~~~ 101 (302)
.+++++.+++++|.+.+.++ ..+|++|+.+++.++. ++||+|++++ +.|+.+.. .++.
T Consensus 76 ~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all--------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 147 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL--------RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLRE 147 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC--------CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGG
T ss_pred HHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc--------CCCCEEEEeCCCCchhHHHHhccccchhhhHHHH
Confidence 78889999999999988664 5788887756665543 7899999998 88876652 2346
Q ss_pred CCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec----C-CCceeccccHHHHHHHHHH--hCCEEEEecCCccc
Q psy7357 102 AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY----P-STFGVFEENITDVCELIHE--HGGQVYLDGANMNA 174 (302)
Q Consensus 102 ~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~----P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~ 174 (302)
.|++++.+|. +++.+|+++|+++++++ ++|++|++++ | |++|.+. |+++|+++||+ +|+++++|.++...
T Consensus 148 ~G~~~~~v~~-~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~v~-dl~~i~~ia~~~~~g~~livD~a~~~~ 224 (427)
T 3hvy_A 148 YGVKYKMVDL-KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLRIA-EIAEIIKSIREVNENVIVFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCC-BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCCHH-HHHHHHHHHHHHCSSSEEEEECTTCTT
T ss_pred cCCEEEEecC-CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCccccHH-HHHHHHHHHHHhCCCCEEEEECCcccc
Confidence 7999999998 77899999999999742 5799999999 8 5889998 89999999999 89999999987433
Q ss_pred ccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 175 QVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.. ...|..+++|++++++||+|+.+ |.|.+|++++++++++++..
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg~---g~~~GG~i~~~~~li~~l~~ 269 (427)
T 3hvy_A 225 VE-EKEPTDVGADIIAGSLIKNIGGG---IATTGGYIAGKEEYVTQATF 269 (427)
T ss_dssp TS-SSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHH
T ss_pred cc-CCCCcccCCeEEEECCccccccc---ccceEEEEEECHHHHHHHHH
Confidence 21 24567789999999999999732 22778999999887776644
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-19 Score=161.86 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
...++++.+++++|++..++..++|+ +++..++.++. +++|+|+++++.|+.+...++..|.+++.+|.++
T Consensus 52 ~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 123 (354)
T 3ly1_A 52 EILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA--------SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD 123 (354)
T ss_dssp HHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT
T ss_pred chHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh--------CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC
Confidence 46789999999999876655555554 55544444432 6789999999999888888889999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCccc-cccc-CCC----Ccc
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNA-QVGL-CRP----GDY 184 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~-~~~~-~~p----~~~ 184 (302)
++.+|+++|+++++++ +++++|++++| |++|.+. +.+++.++++. +|+++|+|+++... .... ..+ ..+
T Consensus 124 ~~~~d~~~l~~~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 201 (354)
T 3ly1_A 124 NWAFDIEGLKAAVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQG 201 (354)
T ss_dssp TSCCCHHHHHHHHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTT
T ss_pred CCCCCHHHHHHHhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhc
Confidence 8899999999999842 57899999999 5899987 68888888777 99999999987421 1110 011 112
Q ss_pred -CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 185 -GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 185 -gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.++++.++||+|+.| |.++|++++++++.+.+..
T Consensus 202 ~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~ 237 (354)
T 3ly1_A 202 AENIILLKTFSKIHAMA----GMRVGYAVAHPTVIALMGR 237 (354)
T ss_dssp CSSEEEEEESSSTTCCG----GGCCEEEECCHHHHHHHGG
T ss_pred CCCEEEEeeChhhccCh----hhhheeeecCHHHHHHHHH
Confidence 4568888889988644 7899999998877665543
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=162.98 Aligned_cols=169 Identities=11% Similarity=0.117 Sum_probs=129.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCC-EEEEcCCCCcccHHHH---HhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRN-VCLIPVSAHGTNPASA---QMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d-~Vlv~~~~hg~~~~~~---~~~g~~ 105 (302)
+..+...++++++++++|.+..++. .++|++|+..++.++..+.. +++| +|+++++.|+++.... +..|++
T Consensus 60 ~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~----~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~ 135 (400)
T 3vax_A 60 RAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGE----RTGRRHIITSAIEHKAVLEPLEHLAGRGFE 135 (400)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHH----HHTCCEEEEETTSCHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhc----cCCCCEEEECccccHhHHHHHHHHHhcCCe
Confidence 4456788999999999999865444 44455666555555432211 3678 9999999988765433 347999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+.... ....+
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~ 210 (400)
T 3vax_A 136 VDFLTPGPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQ-PVAELAQQLRATPTYLHVDAAQGYGKVPG-DLTTP 210 (400)
T ss_dssp EEEECCCTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSCEEEEECTTTTTTSGG-GGGSC
T ss_pred EEEEccCCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeC-cHHHHHHHHHhcCCEEEEEhhhhcCCCCc-Chhhc
Confidence 9999998889999999999998 78999999998 5899998 79999999999999999999885433222 22234
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEE-EeC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIG-VKS 215 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~-~~~ 215 (302)
+|+++.+.||.++ ++|+|+++ +++
T Consensus 211 -~d~~~~s~~K~~g------~~g~g~~~~~~~ 235 (400)
T 3vax_A 211 -IDMISISGHKIGA------PKGVGALVTRRR 235 (400)
T ss_dssp -CSEEEEETGGGTS------CSSCEEEEECBC
T ss_pred -CcEEEEeHHHhCC------CCceEEEEEecc
Confidence 8999999999432 34688888 876
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-20 Score=177.63 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=137.2
Q ss_pred CCCCCC-cccccHHHHHHHHHHHHHHHhCCCee----------eEeeCchHHHHHHHHHHHHHHH-HhhcCCCC------
Q psy7357 21 HPFIPQ-DQARGYEQLIGELETDLCEITGYDKI----------SFQPNSGAQGEYAGLRAIQCYH-QAQDAHHR------ 82 (302)
Q Consensus 21 ~py~p~-e~sqG~l~~~~e~~~~l~~l~g~~~~----------~~~~~~Ga~a~~a~l~a~~~~~-~~~g~~~~------ 82 (302)
++++.. +.+.+..++.+++.+++++++|++.. .+.+.+|++|++.++.+++... ...+...+
T Consensus 99 n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~ 178 (486)
T 1js3_A 99 GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGA 178 (486)
T ss_dssp CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcc
Confidence 555541 33455777888899999999999852 3556667777766666554321 10000001
Q ss_pred ---C-EEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCC---CeEEEEEecC-CCceeccccHHHH
Q psy7357 83 ---N-VCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKE---TLSCLMITYP-STFGVFEENITDV 154 (302)
Q Consensus 83 ---d-~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~---~t~~V~i~~P-n~~G~~~~di~~I 154 (302)
+ .|+++++.|.++...++..|++++.+|+++++.+|+++|+++|++... .+.+|++++| |++|.++ |+++|
T Consensus 179 ~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~-~l~~I 257 (486)
T 1js3_A 179 VLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFD-NLLEV 257 (486)
T ss_dssp HHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCC-CHHHH
Confidence 2 478899999888888888899999999988899999999999973210 1248888888 5899999 89999
Q ss_pred HHHHHHhCCEEEEecCCcccccccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
+++|+++|+++|+|+++......... .+..++|++++++||+++.| +++|+++++++
T Consensus 258 ~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-----~~~G~l~~~~~ 319 (486)
T 1js3_A 258 GPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-----FDCSAMWVKRR 319 (486)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-----SSCEEEEESCH
T ss_pred HHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-----cceEEEEEeCH
Confidence 99999999999999987433221111 12237899999999999865 47899999753
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=170.12 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHhCC-Ceee-EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-H---HHHhCCCE
Q psy7357 32 YEQLIGELETDLCEITGY-DKIS-FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-A---SAQMAGMS 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~-~~~~-~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-~---~~~~~g~~ 105 (302)
..+...++++.+++++|. +..+ +...+|++|+..++.+++... .+++|+|+++++.|++.. . .++..|++
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN----VRAGDNIIISQMEHHANIVPWQMLCARVGAE 140 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc----CCCCCEEEEecccchHHHHHHHHHHHhCCCE
Confidence 456788999999999998 4443 444555677656666553110 157899999999887653 2 35667999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+...+ ....+
T Consensus 141 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~g~~~~-~~~~~ 215 (406)
T 1kmj_A 141 LRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGTEN-PLAEMITLAHQHGAKVLVDGAQAVMHHPV-DVQAL 215 (406)
T ss_dssp EEEECBCTTSCBCGGGHHHHCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCCeEEEEeCCCccccCcC-CHHHHHHHHHHcCCEEEEEchhhcCCCCC-ccccc
Confidence 9999998888899999999998 78999999998 5899998 79999999999999999999985432211 22345
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.|+++.++||+|+ ++|+|++++++++++++.
T Consensus 216 ~~d~~~~s~~K~~g------~~G~G~~~~~~~~~~~~~ 247 (406)
T 1kmj_A 216 DCDFYVFSGHKLYG------PTGIGILYVKEALLQEMP 247 (406)
T ss_dssp TCSEEEEEGGGTTS------CTTCEEEEECHHHHHHCC
T ss_pred CCCEEEEEchhccC------CCCcEEEEEeHHHHhhcC
Confidence 78999999999774 245899999987665554
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-19 Score=163.33 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
...++++.+++++|.+..++..++| ++++..++.++. +++|+|+++++.|..+...++..|.+++.+|.++
T Consensus 68 ~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 139 (363)
T 3ffh_A 68 WASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL--------DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ 139 (363)
T ss_dssp -CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT
T ss_pred chHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC
Confidence 4578999999999987655554444 555544444432 6789999999988877777888899999999988
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccc-cccCC----CCccC
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQ-VGLCR----PGDYG 185 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~-~~~~~----p~~~g 185 (302)
++.+|+++++++++ +++++|++++| |++|.+. +++++.++++.+ |+++|+|+++.... +.... ....+
T Consensus 140 ~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 215 (363)
T 3ffh_A 140 DGEHDLEGMLNAID---EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK 215 (363)
T ss_dssp TSCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred CCCcCHHHHHHhcc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence 88999999999998 78999999999 5899998 799999999887 99999999975211 11111 11223
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
-++++.+.+|+|+. +|.++|++++++++.+.+.
T Consensus 216 ~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~ 248 (363)
T 3ffh_A 216 NLIITRTFSKIYGL----ASARVGYGIADKEIIRQLN 248 (363)
T ss_dssp TEEEEEESSSTTCC----SSCCCEEEEECHHHHHHHH
T ss_pred CEEEEeechhhhcC----chhceeeeecCHHHHHHHH
Confidence 34677777787764 4788999999987766553
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=172.31 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~ 108 (302)
.+...++++++++++|.+ ..+.+++|+.|+.+++.++. ++||+|+++++.|+.... .++..|++++.
T Consensus 113 ~~~~~~l~~~lA~l~g~~-~~v~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 183 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAE-STLLMASGMCASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETILPKMGITATV 183 (445)
T ss_dssp CHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHHS--------CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred ChHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEE
Confidence 367889999999999997 45667888866645554432 578999999998876544 24567999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCe-EEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETL-SCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t-~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
+|.+ |+++|+++++ ++| ++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|.++++
T Consensus 184 v~~~-----d~~~l~~ai~---~~tv~lV~le~p~NptG~v~-dl~~I~~la~~~g~~livD~a~~~~~--~~~~~~~g~ 252 (445)
T 1qgn_A 184 IDPA-----DVGALELALN---QKKVNLFFTESPTNPFLRCV-DIELVSKLCHEKGALVCIDGTFATPL--NQKALALGA 252 (445)
T ss_dssp ECSS-----CHHHHHHHHH---HSCEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCTTTTTC
T ss_pred eCCC-----CHHHHHHHhc---cCCCCEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCccccCC
Confidence 9874 8999999998 678 99999999 5899999 89999999999999999999875332 235667899
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+++.++||+++.+ |..++|++++++++++++
T Consensus 253 Div~~S~sK~~gg~---gd~~~G~l~~~~~l~~~l 284 (445)
T 1qgn_A 253 DLVLHSATKFLGGH---NDVLAGCISGPLKLVSEI 284 (445)
T ss_dssp SEEEECTTTTTTCS---SSCCCEEEEECHHHHHHH
T ss_pred EEEEECCccccccc---ccceEEEEEECHHHHHHH
Confidence 99999999988621 112489999998776655
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=170.49 Aligned_cols=165 Identities=17% Similarity=0.173 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~ 108 (302)
.....++++.+++++|.+ ..+..++|+.|+..++.++. ++||+|+++++.|+.+.. .++..|++++.
T Consensus 61 ~~~~~~l~~~ia~~~g~~-~~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 131 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE-ACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQVDF 131 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred ChHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 366789999999999997 45566777766544444432 688999999999987766 57788999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH-hCCEEEEecCCcccccccCCCCccCC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE-HGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~-~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
+|.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|++ +|+++++|+++.... ...|.+++.
T Consensus 132 v~~~-----d~~~l~~~i~---~~t~~v~l~~p~NptG~v~-~l~~i~~la~~~~~~~li~De~~~~~~--~~~~~~~~~ 200 (404)
T 1e5e_A 132 INTA-----IPGEVKKHMK---PNTKIVYFETPANPTLKII-DMERVCKDAHSQEGVLVIADNTFCSPM--ITNPVDFGV 200 (404)
T ss_dssp ECTT-----STTHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSTTCEEEEECTTTCTT--TCCGGGGTC
T ss_pred ECCC-----CHHHHHHhcC---CCCcEEEEECCCCCCCccc-CHHHHHHHHHhhcCCEEEEECCCchhh--hCCccccCC
Confidence 9974 8899999998 78999999999 5999998 79999999999 999999999875332 123556789
Q ss_pred cEEEeCCCcccCCCCCCCCCcc-eeEEEeCCCCC-CC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGM-GPIGVKSHLAP-FL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~-G~l~~~~~l~~-~l 221 (302)
|+++.+.||+|+.| |.++ |++++++++++ ++
T Consensus 201 di~~~S~sK~~~~~----g~ri~G~~~~~~~~~~~~l 233 (404)
T 1e5e_A 201 DVVVHSATKYINGH----TDVVAGLICGKADLLQQIR 233 (404)
T ss_dssp SEEEEETTTTTTCS----SCCCCEEEEECHHHHHHHH
T ss_pred EEEEEcCccccCCC----CCCeEEEEEECHHHHHHHH
Confidence 99999999999855 5565 99999987655 44
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=173.81 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSV 106 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v 106 (302)
+.++.+++++++++++|++..++..++|+ .+...++.++. ..+ .++++|+++++.|+++.. .++..|+++
T Consensus 109 ~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~----~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~ 183 (465)
T 3e9k_A 109 WITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFF----KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNI 183 (465)
T ss_dssp GGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHC----CCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhc----ccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCcc
Confidence 33455678999999999987666656565 44433333321 111 346779999999877543 455678874
Q ss_pred -----EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCC
Q psy7357 107 -----EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180 (302)
Q Consensus 107 -----~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~ 180 (302)
..+|.+.++.+|+++|+++|+++.+++++|++++| |++|.+. |+++|.++||++|+++++|++|..+...+ .
T Consensus 184 ~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~-~l~~i~~la~~~g~~vi~D~a~~~g~~~~-~ 261 (465)
T 3e9k_A 184 EESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHF-NIPAITKAGQAKGCYVGFDLAHAVGNVEL-Y 261 (465)
T ss_dssp HHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-C
T ss_pred eeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceee-cHHHHHHHHHHcCCEEEEEhhhhcCCcCC-c
Confidence 44566667889999999999765468999999998 5899999 79999999999999999999986444322 2
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lpg~ 224 (302)
..++++|++++++||+|. ||| ++|++++++++.+.+...
T Consensus 262 ~~~~~~D~~~~s~~K~l~-----~gp~~~g~l~~~~~~~~~~~~~ 301 (465)
T 3e9k_A 262 LHDWGVDFACWCSYKYLN-----AGAGGIAGAFIHEKHAHTIKPA 301 (465)
T ss_dssp HHHHTCCEEEECSSSTTC-----CCTTCCCEEEECGGGTTTSCCS
T ss_pred hhhcCCCEEEECcccccc-----cCCCceEEEEEcHHHHhhcCCc
Confidence 345789999999999984 356 479999998887766543
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=164.46 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH----HhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA----QMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~----~~~g~~v~ 107 (302)
..+...++++.+++++|.+. .+.+++|+.|+.+++.++. +++|+|+++++.|+.+.... +..|++++
T Consensus 64 ~~~~~~~l~~~la~~~g~~~-~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~ 134 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAAF-GRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYT 134 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEE
T ss_pred CChHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEE
Confidence 34668899999999999985 4567788877655555443 67899999999987654443 56799999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.++.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++... ....|..+++
T Consensus 135 ~v~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~g~~li~D~~~~~~--~~~~~~~~~~ 203 (392)
T 3qhx_A 135 PVALA-----DLDAVRAAIR---PTTRLIWVETPTNPLLSIA-DIAGIAQLGADSSAKVLVDNTFASP--ALQQPLSLGA 203 (392)
T ss_dssp EECTT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCT--TTCCGGGGTC
T ss_pred EeCCC-----CHHHHHHhhC---CCCeEEEEECCCCCCcEEe-cHHHHHHHHHHcCCEEEEECCCccc--ccCChHHhCC
Confidence 99974 8999999998 79999999999 5899998 7999999999999999999987433 2345667899
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLP 222 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lp 222 (302)
|+++.|+||+++.+ |++++|++++++ ++.+.+.
T Consensus 204 di~~~S~sK~lg~~---g~~~~G~v~~~~~~~~~~l~ 237 (392)
T 3qhx_A 204 DVVLHSTTKYIGGH---SDVVGGALVTNDEELDQSFA 237 (392)
T ss_dssp SEEEEETTTTTTCS---SCCCCEEEEESCHHHHHHHH
T ss_pred cEEEEcCccccCCC---CCceEEEEEECcHHHHHHHH
Confidence 99999999999743 235799999984 6665543
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=167.44 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH----HhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA----QMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~----~~~g~~v~ 107 (302)
..+...++++++++++|.+ ..+..++|++|+..++.++. +++|+|+++++.|+++.... +..|.+++
T Consensus 62 ~~~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~ 132 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGE-AGLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGINVR 132 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE
T ss_pred CChHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEE
Confidence 4477899999999999998 45667788876655554442 67899999999988765544 77899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.+|.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..... ..+..+++
T Consensus 133 ~v~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~--~~~~~~~~ 201 (398)
T 2rfv_A 133 FVDAA-----KPEEIRAAMR---PETKVVYIETPANPTLSLV-DIETVAGIAHQQGALLVVDNTFMSPYC--QQPLQLGA 201 (398)
T ss_dssp EECTT-----SHHHHHHHCC---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHTTCEEEEECTTTCTTT--CCGGGGTC
T ss_pred EeCCC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCccccc--CCchhhCC
Confidence 99974 8999999998 78999999999 5899999 799999999999999999998753332 23456789
Q ss_pred cEEEeCCCcccCCCCCCCCCcc-eeEEEeCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGM-GPIGVKSHLAP 219 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~-G~l~~~~~l~~ 219 (302)
|+++.+.||+|+.| |.++ |++++++++++
T Consensus 202 di~~~s~sK~~~~~----g~~~~G~~~~~~~~~~ 231 (398)
T 2rfv_A 202 DIVVHSVTKYINGH----GDVIGGIIVGKQEFID 231 (398)
T ss_dssp SEEEEETTTTTTCS----SCCCCEEEEECHHHHH
T ss_pred cEEEEeCcccccCC----CCceEEEEEECHHHHH
Confidence 99999999998754 3344 99999987665
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=165.97 Aligned_cols=169 Identities=14% Similarity=0.141 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec-CCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV-RKD 114 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~-~~~ 114 (302)
.++++.+++++|.+..++..++| ++++.+++.++. +++|+|+++++.|..+...++..|.+++.+|+ +++
T Consensus 68 ~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 139 (365)
T 3get_A 68 IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL--------NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHN 139 (365)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCC
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh--------CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCC
Confidence 48889999999987655555545 455544444432 68899999999998887788889999999998 567
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHH--HhCCEEEEecCCcccc---cc-c-CCC----C
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIH--EHGGQVYLDGANMNAQ---VG-L-CRP----G 182 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~--~~g~llivD~a~~~~~---~~-~-~~p----~ 182 (302)
+ +|+++|+++++ +++++|++++| |++|.+. +++++.++++ ++|+++|+|+++.... .+ . ..+ .
T Consensus 140 ~-~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 214 (365)
T 3get_A 140 L-DEFKKLYETHK---DEIKLIFLCLPNNPLGECL-DASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIK 214 (365)
T ss_dssp H-HHHHHHHHHTT---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH
T ss_pred C-CCHHHHHHHhC---CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhc
Confidence 8 99999999998 88999999999 5899998 6888888888 6799999999874211 11 1 111 2
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.++++.+.||+|+.| |.++|++++++++.+.+.
T Consensus 215 ~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~ 250 (365)
T 3get_A 215 EFDNVLYLGTFSKLYGLG----GLRIGYGIANANIISAFY 250 (365)
T ss_dssp HCTTEEEEEESSSTTSCT----TTCCEEEEECHHHHHHHH
T ss_pred cCCCEEEEeecchHhcCc----chheEEEEcCHHHHHHHH
Confidence 235678888889988644 789999999887766553
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=169.08 Aligned_cols=164 Identities=21% Similarity=0.182 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH----HhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA----QMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~----~~~g~~v~~ 108 (302)
.....++++++++++|.+.+ +..++|+.|+.+++.++. ++||+|+++++.|+.+.... ...|.+++.
T Consensus 80 ~p~~~~l~~~la~~~g~~~~-~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~ 150 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAPAA-FATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVF 150 (414)
T ss_dssp CHHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred ChHHHHHHHHHHHHHCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEE
Confidence 36788999999999998754 567788776655555443 68999999999987765544 458999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+|.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++|+|+++.... ...|..+|+|
T Consensus 151 v~~~-----d~~~l~~ai~---~~t~~v~le~p~NptG~~~-~l~~i~~la~~~g~~livDe~~~~~~--~~~~~~~g~d 219 (414)
T 3ndn_A 151 VDGD-----DLSQWERALS---VPTQAVFFETPSNPMQSLV-DIAAVTELAHAAGAKVVLDNVFATPL--LQQGFPLGVD 219 (414)
T ss_dssp ECTT-----CHHHHHHHTS---SCCSEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHHH--HCCCGGGTCS
T ss_pred eCCC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-cHHHHHHHHHHcCCEEEEECCCcccc--cCCchhcCCC
Confidence 9974 8999999998 78999999999 5999998 89999999999999999999875332 3456678999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
+++.+++|+|+.+ |.+.+|+++++++.+.
T Consensus 220 iv~~S~sK~l~~~---G~~~~G~vv~~~~~~~ 248 (414)
T 3ndn_A 220 VVVYSGTKHIDGQ---GRVLGGAILGDREYID 248 (414)
T ss_dssp EEEEETTTTTTCS---SCCCCEEEEECHHHHT
T ss_pred eEeccCCccccCC---CCceEEEEEECHHHHH
Confidence 9999999999733 2267899999876554
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-19 Score=161.78 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhCC-CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 36 IGELETDLCEITGY-DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~-~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..++++.+++++|. +..++..++|+ +++..++.++. +++|+|+++.+.|..+...++..|.+++.+|.++
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 140 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA--------RPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA 140 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC--------CTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc--------CCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC
Confidence 46888999999998 55455555554 54434433332 6789999999999888888889999999999988
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHh--CCEEEEecCCccccc-c-cCCCCccCC
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEH--GGQVYLDGANMNAQV-G-LCRPGDYGS 186 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~--g~llivD~a~~~~~~-~-~~~p~~~ga 186 (302)
++.+|+++|++++++ .++++|++++| |++|.+. .++++|+++|+++ |+++|+|+++..-.. . .......+.
T Consensus 141 ~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 218 (367)
T 3euc_A 141 DFTLDRGAMLAAMAE--HQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGN 218 (367)
T ss_dssp TSCCCHHHHHHHHHH--HCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTT
T ss_pred CCCCCHHHHHHHhhc--cCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCC
Confidence 889999999999983 17889999999 5899873 1688999999999 999999998742111 1 111223455
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++++.+.+|+ +. +|.++|++++++++.+.+.
T Consensus 219 ~i~~~s~sK~-~~----~G~r~G~~~~~~~~~~~~~ 249 (367)
T 3euc_A 219 LLVMRTVSKL-GL----AGIRLGYVAGDPQWLEQLD 249 (367)
T ss_dssp EEEEEECCCT-TS----CSCCEEEEEECHHHHHHHG
T ss_pred EEEEecchhh-cc----cccCceeeeeCHHHHHHHH
Confidence 6888888887 53 4789999999887766553
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=163.47 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcc-cHHHHHhCCCEEEE
Q psy7357 34 QLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGT-NPASAQMAGMSVEP 108 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~-~~~~~~~~g~~v~~ 108 (302)
+...++++.+++++|.+. ..+...+|++|+..++.++. +++|+|++++ +.|+. +...+...|++++.
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 108 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--------GPQDKVLIVSNGAYGARMVEMAGLMGIAHHA 108 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--------CTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc--------CCCCeEEEEeCCCccHHHHHHHHHhCCceEE
Confidence 567889999999999431 24455666676655555443 5677766654 66764 33456677999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+|.++++.+|+++|+++++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+++|
T Consensus 109 v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~d 185 (366)
T 1m32_A 109 YDCGEVARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLN-PIDEVGALAHRYGKTYIVDAMSSFGGIPM-DIAALHID 185 (366)
T ss_dssp EECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CTTTTTCS
T ss_pred EeCCCCCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEECCccccCcCc-cccccCcc
Confidence 999888889999999999843 35788888887 5899998 79999999999999999999985433222 23346789
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+++.+.||+|+. ++|+|++++++++++++..
T Consensus 186 i~~~s~~K~~~~-----~~g~G~~~~~~~~~~~~~~ 216 (366)
T 1m32_A 186 YLISSANKCIQG-----VPGFAFVIAREQKLAACKG 216 (366)
T ss_dssp EEEEESSSTTCC-----CSSEEEEEEEHHHHTTCTT
T ss_pred EEEecCcccccC-----CCceEEEEECHHHHHhhcC
Confidence 999999999863 3468999999877766643
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=166.01 Aligned_cols=168 Identities=20% Similarity=0.153 Sum_probs=125.5
Q ss_pred HHHHHH-HHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-----HHHhCCCEEEE
Q psy7357 35 LIGELE-TDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-----SAQMAGMSVEP 108 (302)
Q Consensus 35 ~~~e~~-~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-----~~~~~g~~v~~ 108 (302)
.++++. +++++++|++.+.+++++|++|+++++.+++ ++||+|+++++.|+.+.. .....++.++.
T Consensus 91 ~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALM--------SPGERLLGLDLANGGHLTHGMRLNFSGKLYENGF 162 (447)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEecCcccccccchhhhhhhcCCeeEEEE
Confidence 445566 9999999999887768889887766666554 689999999998877422 12234567778
Q ss_pred eecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc---ccCCCCcc
Q psy7357 109 VSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV---GLCRPGDY 184 (302)
Q Consensus 109 i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~---~~~~p~~~ 184 (302)
+++++ ++.+|+++|++++++ .++++|++++|++ +... ++++|+++|+++|+++|+|++|..+.. ....+. .
T Consensus 163 ~~~~~~~~~~d~~~l~~~i~~--~~~~~i~~~~~~~-~~~~-~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~ 237 (447)
T 3h7f_A 163 YGVDPATHLIDMDAVRATALE--FRPKVIIAGWSAY-PRVL-DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-P 237 (447)
T ss_dssp ECCCTTTCSCCHHHHHHHHHH--HCCSEEEEECSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T
T ss_pred cCcCcccCCcCHHHHHHHHHh--cCCeEEEEcCCCC-CCcc-CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-C
Confidence 88764 578999999999964 3456788877753 3334 699999999999999999999754331 112222 3
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|+++.++||+|+ ||++|++++++++.+.+
T Consensus 238 ~~di~~~s~sK~l~------G~~gG~i~~~~~~~~~l 268 (447)
T 3h7f_A 238 HADVVSTTVHKTLG------GGRSGLIVGKQQYAKAI 268 (447)
T ss_dssp TCSEEEEESSGGGC------CCSCEEEEECGGGHHHH
T ss_pred CCcEEEecCCcCCC------CCCeEEEEECHHHHHHH
Confidence 57999999999875 78889999998776654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=166.33 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=135.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
+.|..++.+++++++++++|.+. .++. .++|++++..++.++. +++|+|+++++.|..+...++..|.
T Consensus 77 ~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~ 148 (407)
T 3nra_A 77 YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV--------ARGDKVAIVQPDYFANRKLVEFFEG 148 (407)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC--------CTTCEEEEEESCCTHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC--------CCCCEEEEcCCcccchHHHHHHcCC
Confidence 45777888999999999999842 3344 4444455544444332 6789999999999888888889999
Q ss_pred EEEEeec------CCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-
Q psy7357 105 SVEPVSV------RKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA- 174 (302)
Q Consensus 105 ~v~~i~~------~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~- 174 (302)
+++.+|. ++++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~ 225 (407)
T 3nra_A 149 EMVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR 225 (407)
T ss_dssp EEEEEEBCCCSSCCSSCCBCHHHHHHHHH---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB
T ss_pred EEEEeecccccccCcCCCcCHHHHHHHHh---hCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 9999998 3567899999999998 67889999999 58998861 3999999999999999999997431
Q ss_pred cccc--CC---C--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVGL--CR---P--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~~--~~---p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+. .. . ...+.++++.+.+|+|+.| |.++|++++++++++.+.
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~ 276 (407)
T 3nra_A 226 YAGASYTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAFGSRAIIARME 276 (407)
T ss_dssp CTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCG----GGCCEEEEECHHHHHHHH
T ss_pred cCCCCCCChhhcCcccCCcEEEEeCcccccCCC----eeeEEEEEcCHHHHHHHH
Confidence 1111 01 0 2244568899989988744 789999999887766553
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=169.70 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~ 108 (302)
....+++++.+++++|.+.. +.+.+|+.|+.+++.++. ++||+|+++++.|+..... ++..|++++.
T Consensus 81 ~p~~~~le~~lA~l~g~~~~-i~~ssGt~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~ 151 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGAGC-VLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSW 151 (415)
T ss_dssp CHHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHTTC--------CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred CchHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 36788999999999999854 455778766544444332 5789999999988765433 3457999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccccccCCCCccC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
++.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++||+ +|+++++|+++.... ...|-+++
T Consensus 152 v~~~-----d~~~le~ai~---~~tklV~~e~~~NptG~v~-dl~~I~~la~~~~~g~~livD~a~a~~~--~~~p~~~g 220 (415)
T 2fq6_A 152 FDPL-----IGADIVKHLQ---PNTKIVFLESPGSITMEVH-DVPAIVAAVRSVVPDAIIMIDNTWAAGV--LFKALDFG 220 (415)
T ss_dssp ECTT-----CGGGGGGGCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHCTTCEEEEECTTTTTT--SSCGGGGT
T ss_pred ECCC-----CHHHHHHhhc---cCCcEEEEECCCCCCCEee-cHHHHHHHHHhhcCCCEEEEECCCcccc--cCCccccC
Confidence 9863 8999999998 78999999999 5899999 89999999999 999999999875332 23455789
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++.++||+|+.+ |+..+|++++++++++++
T Consensus 221 ~Div~~S~sK~lg~~---g~~~~G~l~~~~~~~~~l 253 (415)
T 2fq6_A 221 IDVSIQAATKYLVGH---SDAMIGTAVCNARCWEQL 253 (415)
T ss_dssp CSEEEEETTTTTTCS---SSCCCEEEEECTTTHHHH
T ss_pred CeEEEEeCccccCCC---CCceEEEEEeCHHHHHHH
Confidence 999999999998733 223379999998776655
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=166.14 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
+...++++.+++++|.+ ..+..++|+.|+.+++.++. +++|+|+++++.|+++... ++..|++++.+
T Consensus 59 ~~~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~~~~--------~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 129 (389)
T 3acz_A 59 PTVEQFEEMVCSIEGAA-GSAAFGSGMGAISSSTLAFL--------QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLI 129 (389)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTTC--------CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 56889999999999998 45567778876644444332 5789999999998765443 56789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
|. .|+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++..... ..|.++++|+
T Consensus 130 ~~-----~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~livD~~~~~~~~--~~~~~~~~di 198 (389)
T 3acz_A 130 DT-----SDVEKVKAAWK---PNTKMVYLESPANPTCKVS-DIKGIAVVCHERGARLVVDATFTSPCF--LKPLELGADI 198 (389)
T ss_dssp CT-----TCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCTTT--CCGGGTTCSE
T ss_pred CC-----CCHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccccc--cCccccCCeE
Confidence 86 48999999998 78999999998 5899999 799999999999999999998743332 2455678999
Q ss_pred EEeCCCcccCCCCCCCCCcc-eeEEEeC-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGM-GPIGVKS-HLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~-G~l~~~~-~l~~~lp 222 (302)
++.++||+|+.| |.++ |++++++ ++++++.
T Consensus 199 ~~~S~sK~~~~~----~~~~~G~v~~~~~~~~~~l~ 230 (389)
T 3acz_A 199 ALHSVSKYINGH----GDVIGGVSSAKTAEDIATIK 230 (389)
T ss_dssp EEEETTTTTTCS----SCCCCEEEEESSHHHHHHHH
T ss_pred EEECChhhccCC----CCceeEEEEECcHHHHHHHH
Confidence 999999999754 3344 9999998 7766553
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=159.26 Aligned_cols=243 Identities=14% Similarity=0.151 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR- 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~- 112 (302)
+...++++.+++++|.+. .+.+++|++|+..++.++. .+++|+|+++++.|+++...++..|++++.++++
T Consensus 56 ~~~~~l~~~la~~~~~~~-~i~~~~gt~al~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 127 (391)
T 3dr4_A 56 RFIVEFEKAFADYCGVKH-AIACNNGTTALHLALVAMG-------IGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP 127 (391)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCc
Confidence 567889999999999984 4567788877656555541 1678999999999988888888999999999998
Q ss_pred CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 113 KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 113 ~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
+++.+|+++|+++++ +++++|+++ |++|... |+++|.++|+++|+++|+|+++..+.... ...+.+ .|+++.
T Consensus 128 ~~~~~d~~~l~~~~~---~~~~~v~~~--n~tG~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~ 200 (391)
T 3dr4_A 128 RTFNLDAAKLEALIT---PRTKAIMPV--HLYGQIC-DMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATF 200 (391)
T ss_dssp TTCSBCGGGSGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEE
T ss_pred cccCcCHHHHHHhcC---CCceEEEEE--CCCCChh-hHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEE
Confidence 467899999999997 789888865 4779988 79999999999999999999875433211 112233 377777
Q ss_pred C--CCcccCCCCCCCCCcceeEEEeCC-CCCCCC-----CCc---------ccCCCCcchhhhHHHHhhHh--h---HHH
Q psy7357 192 N--LHKTFCIPHGGGGPGMGPIGVKSH-LAPFLP-----VHP---------LSSIDSSIGAVSAAHYGSAS--I---LPI 249 (302)
Q Consensus 192 ~--~hK~l~~p~~~gGp~~G~l~~~~~-l~~~lp-----g~~---------~~~~~~~l~~~~a~~~~~~~--~---~~~ 249 (302)
+ .||+|+ |+++|+++++++ +.+.+. |.. .| .+..+..++++...... + ..+
T Consensus 201 S~s~~K~l~------~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~l~aa~~~~~~~~~~~~~~~ 273 (391)
T 3dr4_A 201 SFFGNAIIT------TGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVG-FNYRMTNIQAAIGLAQLERVDEHLAA 273 (391)
T ss_dssp ECBTTSSSC------CBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCC-CBCBCCHHHHHHHHHHHHTHHHHHHH
T ss_pred ECCCCCcCC------cCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccc-cccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 668775 345788887753 432221 100 01 23445555544433221 1 111
Q ss_pred H---HHHHH-HHh-cccccccc--cCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 250 S---WAYIR-RLE-SHYKTLFR--SSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 250 ~---~~y~~-~l~-~g~~~~~~--~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
. ..|+. .|. .|+++... .......+|.|.+.+++ ..|.+.+++.++|.+
T Consensus 274 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~L~~ 329 (391)
T 3dr4_A 274 RERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGE---GLSTTRDQVIKDLDA 329 (391)
T ss_dssp HHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECS---SCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECC---ccchhHHHHHHHHHH
Confidence 0 12222 454 26665433 11112346778887763 135788899988865
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=162.93 Aligned_cols=240 Identities=18% Similarity=0.213 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---H--HHhCCCEEEE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---S--AQMAGMSVEP 108 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~--~~~~g~~v~~ 108 (302)
......++++++++|++...+..++|++++.+++.++. +++|+|+++++.|+.+.. . ....+...+.
T Consensus 76 ~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (420)
T 3gbx_A 76 VVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL--------QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVP 147 (420)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEEEEC------------CHHHHSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------CCCCEEEecchhhcceeccchhhhhcccceeEEe
Confidence 34455668999999999887877889877655555443 689999999999877432 1 1233456777
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc--cc-CCCCccC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV--GL-CRPGDYG 185 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~--~~-~~p~~~g 185 (302)
++.+.++.+|+++|++++++ .++++|++++||. |... |+++|+++|+++|+++|+|+++..+.. +. ..+. ..
T Consensus 148 ~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-~~ 222 (420)
T 3gbx_A 148 YGIDESGKIDYDEMAKLAKE--HKPKMIIGGFSAY-SGVV-DWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV-PH 222 (420)
T ss_dssp EEECTTCSCCHHHHHHHHHH--HCCSEEEECCTTC-CSCC-CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST-TT
T ss_pred ccCCccCCcCHHHHHHHHHh--cCCeEEEEecCcc-CCcc-CHHHHHHHHHHcCCEEEEECCcchhceecccCCccc-cc
Confidence 78777788999999999984 2578899988875 4566 799999999999999999999754332 11 1111 23
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeC---CCCCCCCCCcccC--CCCcchhhhHHHHhhHh------h---HHHHH
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS---HLAPFLPVHPLSS--IDSSIGAVSAAHYGSAS------I---LPISW 251 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~---~l~~~lpg~~~~~--~~~~l~~~~a~~~~~~~------~---~~~~~ 251 (302)
+|+++.++||+|+ ||++|++++++ ++.+.+....... ++.....++| ...++. + .+...
T Consensus 223 ~di~~~s~sK~~~------g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~a~~~~~~~~~~~~~~~~~ 295 (420)
T 3gbx_A 223 AHVVTTTTHKTLA------GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAG-KAVALKEAMEPEFKVYQQQVA 295 (420)
T ss_dssp SSEEEEESSGGGC------SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHH-HHHHHHHTTSHHHHHHHHHHH
T ss_pred CCEEEeecccCCC------CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHH-HHHHHHHHHhHhHHHHHHHHH
Confidence 7999999999886 56669999987 5555443222210 1111211121 111111 1 01100
Q ss_pred ---HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 252 ---AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 252 ---~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
.|+. .|. .|++++.++.. .+-+.++++. .+.+.+++.+.|.+
T Consensus 296 ~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~l~~ 342 (420)
T 3gbx_A 296 KNAKAMVEVFLNRGYKVVSGGTE----NHLFLLDLVD----KNLTGKEADAALGR 342 (420)
T ss_dssp HHHHHHHHHHHHTTCEEGGGSCS----SSEEEEECGG----GTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeeccCCCC----CeEEEEEcCC----CCCCHHHHHHHHHH
Confidence 2222 555 57777543233 5667777763 24678888877754
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=168.94 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=139.0
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCee-----------eEeeCchHHHHHHHHHHHHHHHHhh----c-------CCCCCEE
Q psy7357 28 QARGYEQLIGELETDLCEITGYDKI-----------SFQPNSGAQGEYAGLRAIQCYHQAQ----D-------AHHRNVC 85 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~~-----------~~~~~~Ga~a~~a~l~a~~~~~~~~----g-------~~~~d~V 85 (302)
.+.+..++..++.+++++++|.+.. .+++++|+++++.++++.+.....+ + ..++++|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 3678888999999999999999752 3667788888877777766432110 1 1256799
Q ss_pred EEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccC---CCeEEEEEecC-CCceeccccHHHHHHHHHHh
Q psy7357 86 LIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFEENITDVCELIHEH 161 (302)
Q Consensus 86 lv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~ 161 (302)
++++..|.+....+...|.+++.+|+++++.+|+++|+++|++.+ ..+.+|+++.+ |.+|.++ |+++|+++|+++
T Consensus 192 ~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id-~l~~I~~la~~~ 270 (481)
T 4e1o_A 192 YASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFD-CLSELGPICARE 270 (481)
T ss_dssp EEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHH
T ss_pred EEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcC-CHHHHHHHHHHc
Confidence 999999988877778889999999998889999999999997421 12677887776 4789999 799999999999
Q ss_pred CCEEEEecCCccccccc--CC---CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 162 GGQVYLDGANMNAQVGL--CR---PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 162 g~llivD~a~~~~~~~~--~~---p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
|+++|+|+|+..+.... .+ .+-..+|.+++++||+|+.| ++.|++++++
T Consensus 271 ~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-----~g~g~l~~~~ 324 (481)
T 4e1o_A 271 GLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-----FDCTGFWVKD 324 (481)
T ss_dssp TCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-----SSCEEEEESB
T ss_pred CCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-----CceEEEEEeC
Confidence 99999999875332111 01 12224699999999999976 3567788774
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=162.98 Aligned_cols=172 Identities=18% Similarity=0.226 Sum_probs=134.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.|..+...++++.+++++|.+. .+..++|++++..++.++. +++|+|+++++.|+.+...++..|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~~l~~~~--------~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~ 154 (399)
T 3tqx_A 84 CGTQTIHKELEKDISEFLGTDD-TILYSSCFDANGGLFETLL--------GPEDAIISDELNHASIIDGIRLCKAQRYRY 154 (399)
T ss_dssp CCCBHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHTTHHHHC--------CTTCEEEEETTCCHHHHHHHHSCCSEEEEE
T ss_pred ccCchHHHHHHHHHHHHHCCCc-EEEECchHHHHHHHHHHhc--------CCCCEEEECCcccHHHHHHHHHcCCceeEe
Confidence 4556778999999999999885 5667788876655444432 688999999999998888888999999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCC---CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-C--CC
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKE---TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC-R--PG 182 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~---~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-~--p~ 182 (302)
|. .|+++++++++++.+ ++++|++++| |++|.+. ++++|.++|+++|+++|+|+++..+..+.. . ..
T Consensus 155 ~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~ 228 (399)
T 3tqx_A 155 KN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIA-DLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPE 228 (399)
T ss_dssp CT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHH
T ss_pred CC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHH
Confidence 86 578899999975433 7999999998 6899998 699999999999999999999843321110 0 00
Q ss_pred ----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 ----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 ----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.|+++.++||+|+ |+.+|++++++++++.+.
T Consensus 229 ~~~~~~~~di~~~s~sK~~~------g~~gG~~~~~~~~~~~~~ 266 (399)
T 3tqx_A 229 YCGVADRVDILTGTLGKALG------GASGGYTSGHKEIIEWLR 266 (399)
T ss_dssp HHTCTTCCSEEEEESSSSSC------SSCCEEEEECHHHHHHHH
T ss_pred hhCCCCCCcEEEecchHhcc------cCceEEEEcCHHHHHHHH
Confidence 1256999999999886 344499999987776653
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-19 Score=163.76 Aligned_cols=178 Identities=15% Similarity=0.155 Sum_probs=135.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+.+|.+ ..++..++| ++|+..++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 66 ~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~ 137 (388)
T 1j32_A 66 AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI--------EPGDEVIIPAPFWVSYPEMVKLAEGT 137 (388)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCChhHHHHHHHcCCE
Confidence 4677788888888888888863 344554455 565544444432 67899999999998887788889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc-ccc-
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ-VGL- 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~-~~~- 178 (302)
++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++|+|+++.... .+.
T Consensus 138 ~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 214 (388)
T 1j32_A 138 PVILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ 214 (388)
T ss_dssp EEEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred EEEecCCcccCCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC
Confidence 99999875 46789999999998 68999999999 5899873 269999999999999999999874211 110
Q ss_pred -CCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 -CRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 -~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.. ..+.|+++.+.||+|+.| |.++|++++++++++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l 259 (388)
T 1j32_A 215 HLSIGAASPEAYERSVVCSGFAKTYAMT----GWRVGFLAGPVPLVKAA 259 (388)
T ss_dssp CCCGGGSCHHHHHTEEEEEESTTTTTCT----TTCCEEEECCHHHHHHH
T ss_pred CCCHHHccccccCCEEEEeechhccCCc----ccceEEEEeCHHHHHHH
Confidence 0111 145789999999998644 78899999988776655
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=170.93 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=132.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
+..++.+++++++++++|++...+.+.+|+ .++.+++.+++.+ .+++.|+++++.|++....++..|++++.+
T Consensus 130 ~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~------~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v 203 (456)
T 2z67_A 130 IMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK------YGSNVVIYPYASHKSPIKAVSFVGMNMRLV 203 (456)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH------HCCCEEEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHh------cCCCEEEEECCCcHHHHHHHHHcCCCceEE
Confidence 577888999999999999986533344444 3444445544422 146778889999988777888899999999
Q ss_pred ec---CCCCCCCHHHHHHHH-hcc-CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-C-CC
Q psy7357 110 SV---RKDGTIDFSDLETKV-KKN-KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-C-RP 181 (302)
Q Consensus 110 ~~---~~~g~iD~~~l~~~i-~~~-~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~-~p 181 (302)
+. ++++.+|+++|+++| ++. ++++.+|++++| |++|.++ |+++|+++|+++|+++++|+|+.....+. . ..
T Consensus 204 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~-~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~ 282 (456)
T 2z67_A 204 ETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD-DIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK 282 (456)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH
T ss_pred EEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHH
Confidence 87 567899999999999 421 147888889999 5899999 89999999999999999998753211111 0 00
Q ss_pred Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 182 GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 182 ~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
..+ ++|++++++||++.. ++|+|+++++ +++.+.+
T Consensus 283 ~~~~~~~D~~~~s~hK~~~~-----p~g~G~l~~~~~~~~~~l 320 (456)
T 2z67_A 283 KAFKYRVDAVVSSSDKNLLT-----PIGGGLVYSTDAEFIKEI 320 (456)
T ss_dssp HHHTSCCSEEEEEHHHHHCC-----CSSCEEEEESCHHHHHHH
T ss_pred HhhCCCCCEEEEcCCCCcCC-----CCCeEEEEEcCHHHHhhc
Confidence 112 799999999998763 3589999995 5555544
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-19 Score=162.47 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+. .+.+++|+.|+..++.++. .+++|+|+++++.|+++...+...|++++.+++++
T Consensus 35 ~~~~~l~~~la~~~~~~~-~~~~~sGt~al~~al~~~~-------~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~ 106 (367)
T 3nyt_A 35 PEVTELEDRLADFVGAKY-CISCANGTDALQIVQMALG-------VGPGDEVITPGFTYVATAETVALLGAKPVYVDIDP 106 (367)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCC
Confidence 357889999999999984 4567788877656655542 16789999999999888888889999999999987
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-cCCCCccCCcEEEe
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-LCRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~~~p~~~gaDiv~~ 191 (302)
+ +.+|+++|+++++ +++++|+++ |++|... |+++|.++|+++|+++|+|+++..+... ....+.++ |+++.
T Consensus 107 ~~~~~d~~~l~~~i~---~~~~~v~~~--~~~G~~~-~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-di~~~ 179 (367)
T 3nyt_A 107 RTYNLDPQLLEAAIT---PRTKAIIPV--SLYGQCA-DFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLS-TVACT 179 (367)
T ss_dssp TTCSBCGGGTGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSS-SEEEE
T ss_pred ccCCcCHHHHHHhcC---cCCcEEEee--CCccChh-hHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCC-CEEEE
Confidence 5 7899999999997 789988844 4779888 8999999999999999999998543321 11233444 99999
Q ss_pred CC--CcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 192 NL--HKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 192 ~~--hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
|+ ||+|+.+ | .+|+++++ +++.+++
T Consensus 180 Sf~~~K~l~~~----g-~gg~~~~~~~~l~~~~ 207 (367)
T 3nyt_A 180 SFFPSAPLGCY----G-DGGAIFTNDDELATAI 207 (367)
T ss_dssp ECCTTSSSCCS----S-CCEEEEESCHHHHHHH
T ss_pred ECCCCCcCCCc----C-ceeEEEeCCHHHHHHH
Confidence 84 8988632 2 27888885 4554433
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=158.38 Aligned_cols=174 Identities=18% Similarity=0.156 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 33 EQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.++.+++.+.+++.+|. +..++..++|+ ++..+++.++. +++|+|+++++.|+.+...++..|.+++.+
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v 143 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG--------GPGRTALGFQPSYSMHPILAKGTHTEFIAV 143 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------STTCEEEEEESSCTHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc--------CCCCEEEEcCCChHHHHHHHHHcCCEEEEe
Confidence 35556666666665554 44455556665 44434444332 578999999999988877888899999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc---cCCCCccC
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG---LCRPGDYG 185 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~~p~~~g 185 (302)
|.++++.+|+++++++++++ ++++|++++| |++|.+. |++++.++++.+++++|+|+++...... +.....++
T Consensus 144 ~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 220 (369)
T 3cq5_A 144 SRGADFRIDMDVALEEIRAK--QPDIVFVTTPNNPTGDVT-SLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYP 220 (369)
T ss_dssp ECCTTSSCCHHHHHHHHHHH--CCSEEEEESSCTTTCCCC-CHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCT
T ss_pred cCCcCCCCCHHHHHHHhhcc--CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCC
Confidence 98777789999999999831 6788999998 5899998 7999999999999999999997422211 11112334
Q ss_pred -CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 -SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 -aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.++++.++||+|+.| |.++|++++++++++.+
T Consensus 221 ~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l 253 (369)
T 3cq5_A 221 TKLVVSRTMSKAFDFA----GGRLGYFVANPAFIDAV 253 (369)
T ss_dssp TTEEEEEESSSTTSCG----GGCCEEEEECTHHHHHH
T ss_pred CCEEEEEechHhcCCc----ccceEEEEeCHHHHHHH
Confidence 568899899988644 77899999998766554
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=161.56 Aligned_cols=173 Identities=10% Similarity=0.096 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHhCCC----ee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCccc-HHHHHhCCCE
Q psy7357 33 EQLIGELETDLCEITGYD----KI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTN-PASAQMAGMS 105 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~----~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~-~~~~~~~g~~ 105 (302)
.+...++++.++++++.. .. .+..++|++++..++.++.. ..+++|+|+++++ .|+.. ...++..|++
T Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~-----~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~ 111 (385)
T 2bkw_A 37 VSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFIL-----SKAPNKNVLVVSTGTFSDRFADCLRSYGAQ 111 (385)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSC-----TTCSCCEEEEECSSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhc-----cCCCCCeEEEEcCCcchHHHHHHHHHcCCc
Confidence 345677888888888764 23 34455666766555544320 0046889888754 33322 2456778999
Q ss_pred EEEeec-CCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCC
Q psy7357 106 VEPVSV-RKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 106 v~~i~~-~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p 181 (302)
++.+|. ++++.+|+++|++++++ +++++|++++| |++|.+. |+++|.++|+++ |+++|+|+++..+...+ ..
T Consensus 112 ~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~-~~ 187 (385)
T 2bkw_A 112 VDVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLS-DLKAISQAIKQTSPETFFVVDAVCSIGCEEF-EF 187 (385)
T ss_dssp EEEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTSEEEEECTTTTTTSCC-CT
T ss_pred eEEEecCCCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEc-CHHHHHHHHHhhCCCCEEEEECccccCCccc-cc
Confidence 999999 87888999999999983 27888999998 5899998 799999999999 99999999985433222 34
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
..+++|+++.++||+|+. ++|+|++++++++++
T Consensus 188 ~~~~~d~~~~s~~K~~~~-----~~G~G~~~~~~~~~~ 220 (385)
T 2bkw_A 188 DEWGVDFALTASQKAIGA-----PAGLSISLCSSRFMD 220 (385)
T ss_dssp TTTTCSEEEEESSSTTCC-----CSCEEEEEECHHHHH
T ss_pred cccCceEEEecCcccccc-----CCcceEEEEcHHHHH
Confidence 556889999999999873 357899999877655
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=163.62 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++++++++|.+.. +...+|+.|+.+++.++. ++||+|+++++.|+.+.. .+...|++++.+
T Consensus 82 p~~~~le~~lA~l~g~~~~-v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v 152 (430)
T 3ri6_A 82 PTVEDLEQRLKNLTGALGV-LALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFV 152 (430)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 5678999999999999874 556788876655555543 689999999999877655 556889999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++|+|+++... .+.+|..+|+|+
T Consensus 153 ~~~-----d~~~l~~ai~---~~t~~v~~e~p~NptG~~~-dl~~i~~la~~~g~~livD~a~~~~--~~~~~~~~g~di 221 (430)
T 3ri6_A 153 DVM-----DSLAVEHACD---ETTKLLFLETISNPQLQVA-DLEALSKVVHAKGIPLVVDTTMTPP--YLLEAKRLGVDI 221 (430)
T ss_dssp CTT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTSCT--TTCCGGGGTCSE
T ss_pred CCC-----CHHHHHHhhC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccc--ccCChHHcCCEE
Confidence 974 8999999998 79999999999 6899998 8999999999999999999987433 335677889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
++.+++|+|+.| |..-.|+++++.
T Consensus 222 v~~S~sK~l~g~---g~~~gG~vv~~~ 245 (430)
T 3ri6_A 222 EVLSSTKFISGG---GTSVGGVLIDHG 245 (430)
T ss_dssp EEEECCCEEETT---EEECCEEEEECS
T ss_pred EEECCcccccCC---CCceEEEEEECC
Confidence 999999999733 112456777553
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=161.09 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=125.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-ee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-HHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-KI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-PASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~~~~~~~g~~ 105 (302)
+.+..+.+.++++++++++|.+ .. .+...+|++|+..++.++. ++ +.+++..+.|+.. ...++..|++
T Consensus 38 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~--------~~-~~i~~~~~~~~~~~~~~~~~~g~~ 108 (362)
T 3ffr_A 38 SKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV--------EK-KSFHCVNGSFSKRFYEFAGELGRE 108 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC--------SS-EEEEEECSHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc--------CC-cEEEEcCcHHHHHHHHHHHHhCCC
Confidence 3467789999999999999984 33 4445556666544444432 34 5555554444422 1245678999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh-CCEEEEecCCcccccccCCCCc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH-GGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~-g~llivD~a~~~~~~~~~~p~~ 183 (302)
++.++.++++.+|+++|+ ++ ++|++|++++| |++|.+. |+++|+++|+++ |+++++|+++....... ...
T Consensus 109 ~~~v~~~~~~~~d~~~l~--~~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~p~~~li~D~a~~~~~~~~-~~~- 180 (362)
T 3ffr_A 109 AYKEEAAFGKGFYPADIT--VP---ADAEIICLTHNETSSGVSM-PVEDINTFRDKNKDALIFVDAVSSLPYPKF-DWT- 180 (362)
T ss_dssp EEEEECCTTCCCCGGGCC--CC---TTCCEEEEESEETTTTEEC-CHHHHTTSGGGSTTSEEEEECTTTTTSSCC-CTT-
T ss_pred eEEEecCCCCCCCHHHHh--cc---CCccEEEEEcCCCCcceeC-CHHHHHHHHHhCCCCEEEEecccccCCccc-Chh-
Confidence 999999888899999998 54 78999999998 6899999 799999999999 99999999875332211 111
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+|+++.++||+|+.| +|+|++++++++++++
T Consensus 181 -~~d~~~~s~~K~~~~~-----~G~g~~~~~~~~~~~~ 212 (362)
T 3ffr_A 181 -KIDSVFFSVQKCFGLP-----AGLGVWILNDRVIEKS 212 (362)
T ss_dssp -SCSEEEEETTSTTCCC-----SCCEEEEEEHHHHHHH
T ss_pred -HCcEEEEecccccCCC-----CceEEEEECHHHHHHh
Confidence 2899999999999743 5789999988765544
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=168.20 Aligned_cols=171 Identities=16% Similarity=0.085 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHhCCCeeeE--eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHH----------Hh
Q psy7357 35 LIGELETDLCEITGYDKISF--QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASA----------QM 101 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~--~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~----------~~ 101 (302)
..+++++.+++++|.+.+.+ ..++|+.|+.+++.++. +++|+|++++ +.|+.+...+ +.
T Consensus 66 ~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~--------~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~ 137 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL--------RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKE 137 (431)
T ss_dssp HHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC--------CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGG
T ss_pred hHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC--------CCCCEEEEeCCCCchhHHHHHhhcccccchHHH
Confidence 47889999999999987643 35688877656555443 6899999998 8888766443 34
Q ss_pred CCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec----CC-CceeccccHHHHHHHHHH--hCCEEEEecCCccc
Q psy7357 102 AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY----PS-TFGVFEENITDVCELIHE--HGGQVYLDGANMNA 174 (302)
Q Consensus 102 ~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~----Pn-~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~ 174 (302)
.|++++.+|.++++.+|+++|+++++ ++|++|++++ |+ .+|... |+++|+++|++ +|+++++|+++...
T Consensus 138 ~G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~-~l~~i~~la~~~~~~~~livDea~~~~ 213 (431)
T 3ht4_A 138 YNIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTIS-QIKEMIAFVKEIKPDVVVFVDNCYGEF 213 (431)
T ss_dssp GTCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTT
T ss_pred cCCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHH-HHHHHHHHHHhhCCCCEEEEeCCChhh
Confidence 79999999998889999999999998 7899999996 42 456667 79999999999 99999999987433
Q ss_pred ccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 QVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
... ..|..+++|+++.++||+|+.. ++|.+|++++++++++++
T Consensus 214 ~~~-~~~~~~g~Di~~~S~sK~lgg~---~~~~GG~v~~~~~li~~l 256 (431)
T 3ht4_A 214 IEE-QEPCHVGADLMAGSLIKNPGGG---IVKTGGYIVGKEQYVEAC 256 (431)
T ss_dssp SSS-CCGGGTTCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHH
T ss_pred ccC-CCccccCCeEEEcCccccCCCC---CCCceEEEEecHHHHHHH
Confidence 211 3566778999999999999742 235459999998776655
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=161.82 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH----HhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA----QMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~----~~~g~~v~ 107 (302)
..+...++++.+++++|.+ ..+..++|+.|+..++.++. +++|+|+++++.|+++.... ...|++++
T Consensus 63 ~~~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 133 (398)
T 1gc0_A 63 SNPTLNLLEARMASLEGGE-AGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLR 133 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEE
T ss_pred CChHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEE
Confidence 3467889999999999998 45667888876655555442 57899999999998765543 57799999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.++.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..... ..+..+++
T Consensus 134 ~~~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~~--~~~~~~~~ 202 (398)
T 1gc0_A 134 HVDMA-----DLQALEAAMT---PATRVIYFESPANPNMHMA-DIAGVAKIARKHGATVVVDNTYCTPYL--QRPLELGA 202 (398)
T ss_dssp EECTT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHGGGTCEEEEECTTTHHHH--CCGGGGTC
T ss_pred EECCC-----CHHHHHHhcC---CCCeEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCccccc--CCchhhCc
Confidence 99863 8999999998 78999999999 5899998 799999999999999999999754332 23456789
Q ss_pred cEEEeCCCcccCCCCCCCCCc-ceeEEEeCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAP 219 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~ 219 (302)
|+++.++||+|+.| |.+ +|+++++++.++
T Consensus 203 d~~~~S~sK~~~~~----~~~~~G~l~~~~~~~~ 232 (398)
T 1gc0_A 203 DLVVHSATKYLSGH----GDITAGIVVGSQALVD 232 (398)
T ss_dssp SEEEEETTTTTTCS----SSCCCEEEEECHHHHH
T ss_pred eEEEECCccccCCC----CCCeEEEEEEChHHHH
Confidence 99999999999854 233 599999876543
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=167.33 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=137.8
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCe----------eeEeeCchHHHHHHHHHHHHHHHHh----hcC-------CCCCEEE
Q psy7357 28 QARGYEQLIGELETDLCEITGYDK----------ISFQPNSGAQGEYAGLRAIQCYHQA----QDA-------HHRNVCL 86 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~----------~~~~~~~Ga~a~~a~l~a~~~~~~~----~g~-------~~~d~Vl 86 (302)
.+.+..++..++.+++++++|.+. ..+++.+|+++++.++.+.+..... .+. .++++|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 467888888889999999999984 3466778888887777776643211 010 1346899
Q ss_pred EcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccC---CCeEEEEEecCC-CceeccccHHHHHHHHHHhC
Q psy7357 87 IPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNK---ETLSCLMITYPS-TFGVFEENITDVCELIHEHG 162 (302)
Q Consensus 87 v~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~---~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g 162 (302)
+++..|.+....+...|++++.+|+++++ +|+++|+++|++.+ ..+.+|+++.++ .+|.++ |+++|+++|+++|
T Consensus 187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~-~l~~I~~la~~~~ 264 (475)
T 3k40_A 187 CSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFD-YLDECGPVGNKHN 264 (475)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTT
T ss_pred ECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcC-CHHHHHHHHHHhC
Confidence 99999988887888889999999999889 99999999997421 126778888774 789999 8999999999999
Q ss_pred CEEEEecCCcccccccC--C---CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 163 GQVYLDGANMNAQVGLC--R---PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~--~---p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+++|+|+++..+..... + .+-..+|.+++++||+|+.| +++|++++++
T Consensus 265 ~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-----~g~g~l~~~~ 317 (475)
T 3k40_A 265 LWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-----FDCSAMWLKD 317 (475)
T ss_dssp CEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-----SSCEEEEESS
T ss_pred CeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-----CceEEEEEeC
Confidence 99999998753321110 1 12224799999999999866 3667888875
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=164.84 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=134.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHH---------hhcCCC--CC-EEEEcCCCCcc
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQ---------AQDAHH--RN-VCLIPVSAHGT 94 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~---------~~g~~~--~d-~Vlv~~~~hg~ 94 (302)
+.+..++..++++++++++|.+. ..++..+|++|++.++.++|.++. ..|... ++ +|++++..|.+
T Consensus 135 ~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s 214 (497)
T 2qma_A 135 ASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFT 214 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTH
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHH
Confidence 45677777788999999999863 355567777887777777654321 122111 35 89999999988
Q ss_pred cHHHHHhCCC---EEEEeecCCCCCCCHHHHHHHHhccC---CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEE
Q psy7357 95 NPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 95 ~~~~~~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~lliv 167 (302)
+...+...|. +++.+|+++++.+|+++|+++|++.. .++.+|++++| |++|.+. |+++|+++|+++|+++|+
T Consensus 215 ~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~-~l~~I~~l~~~~~~~l~v 293 (497)
T 2qma_A 215 VQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAID-DLDFIADMAVKHDMWMHV 293 (497)
T ss_dssp HHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCC-CHHHHHHHHHHcCCEEEE
Confidence 8777777766 89999998889999999999997421 12447888877 4799999 799999999999999999
Q ss_pred ecCCcccccccC-C---CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 168 DGANMNAQVGLC-R---PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 168 D~a~~~~~~~~~-~---p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
|+++..+..... . .+..++|+++.+.||+|+.| .++|+++++++
T Consensus 294 D~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p-----~~~G~l~~~~~ 341 (497)
T 2qma_A 294 DGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQT-----ISCGALLVNDK 341 (497)
T ss_dssp EETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC-----SSCEEEEESCG
T ss_pred ehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCC-----cceEEEEEeCH
Confidence 999753332211 0 11126899999999999754 36899998753
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=164.68 Aligned_cols=181 Identities=20% Similarity=0.246 Sum_probs=122.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHH-HHHHhhcCCCCCEEEEcCCCCc-------------
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQ-CYHQAQDAHHRNVCLIPVSAHG------------- 93 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~-~~~~~~g~~~~d~Vlv~~~~hg------------- 93 (302)
+++..+...++++++++++|.+..++..++| ++++..++.++. .++.... +++|+|+++.+.|+
T Consensus 56 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~-~~gd~vl~~~p~y~~~~~i~~~~~~h~ 134 (432)
T 3a9z_A 56 GRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQT-LQGRTVDQISPEEGTRPHFITCTVEHD 134 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHH-HC------------CCCEEEEETTCCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccc-cCCccccccccccccCCeEEEecCcch
Confidence 3456678899999999999997544444444 566656665553 1211000 14555555555443
Q ss_pred ccHH----HHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC-----
Q psy7357 94 TNPA----SAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG----- 162 (302)
Q Consensus 94 ~~~~----~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g----- 162 (302)
+... .++..|.+++.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|
T Consensus 135 s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~ 210 (432)
T 3a9z_A 135 SIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIM-PISEISRRIKALNQIRAA 210 (432)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc---CCceEEEEECcccCccccc-CHHHHHHHHHhcCccccc
Confidence 3321 2345799999999976 78899999999998 78999999998 5899999 7999999999999
Q ss_pred -----CEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC-CCCCC
Q psy7357 163 -----GQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL-APFLP 222 (302)
Q Consensus 163 -----~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l-~~~lp 222 (302)
+++|+|+++..+...+ ....+++|+++.++||++ ||++|+++++++. ...+.
T Consensus 211 ~~~~~~~livDea~~~~~~~~-~~~~~~~d~~~~s~~K~~-------g~~~G~~~~~~~~~~~~~~ 268 (432)
T 3a9z_A 211 SGLPRVLVHTDAAQALGKRRV-DVEDLGVDFLTIVGHKFY-------GPRIGALYVRGVGKLTPLY 268 (432)
T ss_dssp HTCCCCEEEEECTTTTTTSCC-CHHHHCCSEEEEEGGGTT-------CCSCEEEEETTBTTTBCCC
T ss_pred ccCCceEEEEEchhhhCCccc-ChhhcCCCEEEEehhHhc-------CCcceEEEEccccccCCcC
Confidence 9999999984432111 112357899999999975 3779999999765 44443
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=160.89 Aligned_cols=241 Identities=15% Similarity=0.177 Sum_probs=146.1
Q ss_pred HHHHH-HHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc---HHHHHhCC--CEEEE
Q psy7357 35 LIGEL-ETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN---PASAQMAG--MSVEP 108 (302)
Q Consensus 35 ~~~e~-~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~---~~~~~~~g--~~v~~ 108 (302)
...++ ++++++++|.+.+.+.+++|++|+.+++.++. ++||+|+++++.|+.+ .......| ++++.
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~ 149 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQ 149 (425)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECC------------------CEEEE
T ss_pred HHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhcccceeeee
Confidence 34444 47899999999877778888887756555542 6899999999998762 22222334 46667
Q ss_pred eecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCc-cC
Q psy7357 109 VSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGD-YG 185 (302)
Q Consensus 109 i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~-~g 185 (302)
++.++ ++.+|+++|++++++ +++++|++++|++ |... ++++|.++|+++|+++|+|++|..+.... ..+.. ..
T Consensus 150 ~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~ 225 (425)
T 3ecd_A 150 YGVSRDTMLIDYDQVEALAQQ--HKPSLIIAGFSAY-PRKL-DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEH 225 (425)
T ss_dssp ECCCTTTSSCCHHHHHHHHHH--HCCSEEEEECSCC-CSCC-CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT
T ss_pred cCCCcccCccCHHHHHHHHhh--cCCcEEEEccccC-CCcC-CHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhc
Confidence 77664 468999999999974 4678899988765 6777 79999999999999999999864433211 11111 13
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCccc-CCCCcchhhhHHHHhhHh------h---HHHHH---
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPLS-SIDSSIGAVSAAHYGSAS------I---LPISW--- 251 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~~-~~~~~l~~~~a~~~~~~~------~---~~~~~--- 251 (302)
+|+++.++||+|+ ||++|++++++ ++.+.+...... ....+.....++...++. + .++..
T Consensus 226 ~di~~~s~sK~l~------g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 299 (425)
T 3ecd_A 226 AHVVTSTTHKTLR------GPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANA 299 (425)
T ss_dssp CSEEEEESSGGGC------CCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred CcEEEecCCcccC------CCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7999999999884 68889999984 454444322211 011111111111222221 0 01000
Q ss_pred HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 252 AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 252 ~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
.|+. .|. .|+++..++.. .+.+.+++++ .+.+..++.+.|.+
T Consensus 300 ~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~l~~ 343 (425)
T 3ecd_A 300 QALGDVLKAGGVDLVTGGTD----NHLLLVDLRP----KGLKGAQVEQALER 343 (425)
T ss_dssp HHHHHHHHHTTCEEGGGSCS----SSEEEEECGG----GTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeeccCCCC----ceEEEEEeCC----CCCCHHHHHHHHHH
Confidence 2222 455 47776543333 6677788763 24678888877754
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-18 Score=158.68 Aligned_cols=176 Identities=16% Similarity=0.200 Sum_probs=133.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+++.+++.+.+|. +..++..++| ++++..++.++. +++ |+|+++++.|+.+...++..|.
T Consensus 75 ~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~--------~~g~d~vl~~~p~~~~~~~~~~~~g~ 146 (398)
T 3ele_A 75 AQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT--------SDAYDEFITIAPYFPEYKVFVNAAGA 146 (398)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CSTTCEEEEESSCCTHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc--------CCCCCEEEEeCCCchhhHHHHHHcCC
Confidence 467788888999999888885 4445554445 455544444432 578 9999999999888888889999
Q ss_pred EEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHH------hCCEEEEecCCcc-
Q psy7357 105 SVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHE------HGGQVYLDGANMN- 173 (302)
Q Consensus 105 ~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~------~g~llivD~a~~~- 173 (302)
+++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|++ +|+++|+|+++..
T Consensus 147 ~~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~ 223 (398)
T 3ele_A 147 RLVEVPADTEHFQIDFDALEERIN---AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREI 223 (398)
T ss_dssp EEEEECCCTTTSSCCHHHHHHTCC---TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTC
T ss_pred EEEEEecCCcCCcCCHHHHHHHhC---cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEecccccc
Confidence 999999976 45899999999997 78999999999 58998751 37888899999 9999999998742
Q ss_pred cccc--cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 174 AQVG--LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 174 ~~~~--~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
...+ ... ....+.++++.+.+|+|+.| |.++|++++++++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~ 268 (398)
T 3ele_A 224 VYDGIKVPFVTKYYDNTLVCYSYSKSLSLP----GERIGYVLVPDEVYD 268 (398)
T ss_dssp BCTTCCCCCGGGTCSSEEEEEESTTTSSCT----TTCCEEEECCTTSTT
T ss_pred ccCCCCcCChHhhcCCeEEEEehhhcCCCc----cceeEEEEEcchhhh
Confidence 1111 111 12345568888889988754 789999999988665
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=158.50 Aligned_cols=175 Identities=10% Similarity=0.130 Sum_probs=131.9
Q ss_pred cHHHHHHHHHHHHHHHhC--CCeeeEeeCc-hHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 31 GYEQLIGELETDLCEITG--YDKISFQPNS-GAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g--~~~~~~~~~~-Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
+..++.+++++.+++++| .+..++..++ |++++..++.++. +++|+|+++++.|..+...++..|.+++
T Consensus 68 ~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~ 139 (391)
T 4dq6_A 68 RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT--------KANDKIMIQEPVYSPFNSVVKNNNRELI 139 (391)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCTHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCHHHHHHHHHcCCeEE
Confidence 446888999999999999 5554454444 4455544444442 6789999999999888888889999999
Q ss_pred EeecC--CCC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceec---cccHHHHHHHHHHhCCEEEEecCCcccc-ccc
Q psy7357 108 PVSVR--KDG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVF---EENITDVCELIHEHGGQVYLDGANMNAQ-VGL 178 (302)
Q Consensus 108 ~i~~~--~~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~---~~di~~I~~ia~~~g~llivD~a~~~~~-~~~ 178 (302)
.+|.+ .++ .+|+++|+++++ + +++|++++| |++|.+ + ++++|+++|+++|+++|+|+++.... .+.
T Consensus 140 ~~~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 214 (391)
T 4dq6_A 140 ISPLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPHNPVGRVWTKD-ELKKLGDICLKHNVKIISDEIHSDIILKKH 214 (391)
T ss_dssp ECCCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred eeeeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCCCCCCcCcCHH-HHHHHHHHHHHcCCEEEeeccccccccCCC
Confidence 99987 333 489999999998 5 999999999 589988 6 79999999999999999999874211 111
Q ss_pred --CCCCccC-----CcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCC
Q psy7357 179 --CRPGDYG-----SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLP 222 (302)
Q Consensus 179 --~~p~~~g-----aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lp 222 (302)
.....+. ..+++.+.||+|+.| |.++|++++++ ++.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~ 262 (391)
T 4dq6_A 215 KHIPMASISKEFEKNTITCMAPTKTFNIA----GLQSSYVVLPDEKDYKLLD 262 (391)
T ss_dssp CCCCGGGSCHHHHHTEEEEECSHHHHTCG----GGCCEEEECCSHHHHHHHH
T ss_pred CccCHHHcCccccCcEEEEEechhhccCc----ccceEEEEeCCHHHHHHHH
Confidence 1111222 238888999999744 78999999886 6666553
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-19 Score=163.99 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=133.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+.+|. +..++..++| ++++..++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 77 ~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~ 148 (389)
T 1o4s_A 77 PRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--------DPGDEVIVFSPVWVSYIPQIILAGGT 148 (389)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 356777777777777777786 3344544444 455544444432 57899999999998888888889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccccc-c-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQV-G-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~-~-~ 178 (302)
++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. +++++|.++|+++|+++|+|+++..... + .
T Consensus 149 ~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~ 225 (389)
T 1o4s_A 149 VNVVETFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEF 225 (389)
T ss_dssp EEEEECCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCC
T ss_pred EEEEecCCccCCCCCHHHHHHhcc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 99999875 35789999999997 68999999999 5899874 2599999999999999999998753211 1 0
Q ss_pred CCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.. ..+.|+++.++||+|+.| |.++|++++++++++.+
T Consensus 226 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~l~~~~~~~~~l 268 (389)
T 1o4s_A 226 TSILDVSEGFDRIVYINGFSKSHSMT----GWRVGYLISSEKVATAV 268 (389)
T ss_dssp CCHHHHCSSSTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHH
T ss_pred CCHhhcCCCCCcEEEEeechhhcCCc----ccceEEEEeCHHHHHHH
Confidence 1111 146799999999998644 67899999988776655
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-19 Score=160.74 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=127.7
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEeecCC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVSVRK 113 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~~~~ 113 (302)
++++.+++++|.+ ..+..++|++|+..++.++. +++|+|+++++.|+++... ++..|++++.+|.
T Consensus 2 ~l~~~la~~~g~~-~~i~~~sG~~a~~~~~~~~~--------~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-ACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence 6889999999998 56677888766644444432 5789999999998776543 3468999999986
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH-hCCEEEEecCCcccccccCCCCccCCcEEEe
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE-HGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~-~g~llivD~a~~~~~~~~~~p~~~gaDiv~~ 191 (302)
.|+++++++++ +++++|++++| |++|.+. |+++|.++|++ +|+++++|+++..+.. ..+.+++.|+++.
T Consensus 71 ---~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~ 141 (331)
T 1pff_A 71 ---AVPGNIEKHLK---PNTRIVYFETPANPTLKVI-DIEDAVKQARKQKDILVIVDNTFASPIL--TNPLDLGVDIVVH 141 (331)
T ss_dssp ---TSTTHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSSSCEEEEECTTTHHHH--CCGGGGTCSEEEE
T ss_pred ---CCHHHHHHhhc---CCCeEEEEECCCCCcCccc-CHHHHHHHHhhhcCCEEEEECCCccccc--CChhhcCCcEEEE
Confidence 48899999997 78999999999 5899999 79999999999 9999999999854332 2234678999999
Q ss_pred CCCcccCCCCCCCCCc-ceeEEEeC-CCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPG-MGPIGVKS-HLAPFLP 222 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~-~G~l~~~~-~l~~~lp 222 (302)
++||+|+.| |.+ +|++++++ ++.+++.
T Consensus 142 s~~K~~~~~----~~r~~G~~~~~~~~~~~~l~ 170 (331)
T 1pff_A 142 SATKYINGH----TDVVAGLVCSRADIIAKVKS 170 (331)
T ss_dssp ETTTTTSSS----SSCCCEEEEECHHHHHHHHH
T ss_pred ECccccCCC----CCceEEEEEeCcHHHHHHHH
Confidence 999999854 333 79999997 7765553
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-19 Score=164.38 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=133.5
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Ceee-E-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKIS-F-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~-~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+++.+.+++.+|. +..+ + ..++|++++..++.++. +++|+|+++++.|+.+...++..|.
T Consensus 62 ~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~ 133 (389)
T 1gd9_A 62 NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL--------KDGEEVLIPTPAFVSYAPAVILAGG 133 (389)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC--------CTTCEEEEEESCCTTHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHCCC
Confidence 457777778888888777785 3333 4 44555566644444432 5789999999999888888888899
Q ss_pred EEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc--cHHHHHHHHHHhCCEEEEecCCccccc-c-
Q psy7357 105 SVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQV-G- 177 (302)
Q Consensus 105 ~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~-~- 177 (302)
+++.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|+++..... +
T Consensus 134 ~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 210 (389)
T 1gd9_A 134 KPVEVPTYEEDEFRLNVDELKKYVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA 210 (389)
T ss_dssp EEEEEECCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred EEEEeccCCccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC
Confidence 999999875 35689999999997 688999999994 7998742 699999999999999999998743211 1
Q ss_pred -cCCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 178 -LCRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 178 -~~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..+. +..+.|+++.+.||+|+.| |.++|++++++++++.+
T Consensus 211 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l 255 (389)
T 1gd9_A 211 RHYSIASLDGMFERTITVNGFSKTFAMT----GWRLGFVAAPSWIIERM 255 (389)
T ss_dssp CCCCGGGSTTCGGGEEEEEESTTTTTCG----GGCCEEEECCHHHHHHH
T ss_pred CCCCHhhccCCCCCEEEEecChhhcCCc----ccceEEEEECHHHHHHH
Confidence 0011 1145789999999988644 67899999998776654
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=161.77 Aligned_cols=174 Identities=17% Similarity=0.226 Sum_probs=130.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCC--C
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAG--M 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g--~ 104 (302)
+.-+.+.++++++.+++++|.+...+.+++|+.|+.+++. .+ ++||+|+++++.|.++. ..++..| .
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~---~~------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~ 100 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVAR---QL------TIDEDCLIIRNGWFSYRWTQILEKGKFAK 100 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH---HH------CTTCEEEEEECSHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHH---hC------CCCCeEEEEeCCchhHHHHHHHHHhCCCC
Confidence 3456789999999999999998655667788877655432 22 57899999888765443 2334444 5
Q ss_pred EEEEeecCCC---------CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCC
Q psy7357 105 SVEPVSVRKD---------GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 105 ~v~~i~~~~~---------g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~ 171 (302)
+++.++.+++ +.+|++++++++++ +++++|++.++ |++|.+. | +++|+++||++|+++++|+++
T Consensus 101 ~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~ 177 (379)
T 3ke3_A 101 SSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIA 177 (379)
T ss_dssp EEEEEECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred ceEEEeccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEecc
Confidence 8888887532 26899999999963 36777877775 6889988 7 999999999999999999987
Q ss_pred cccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 MNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. +.. ...+..+++|++++++||+|+. ++|+|++++++++.+++
T Consensus 178 ~-g~~-~~~~~~~~~d~~~~s~~K~l~~-----~~g~g~~~~~~~~~~~l 220 (379)
T 3ke3_A 178 S-GCV-WLDMKELGIDVLISAPQKGWSS-----TPCAGLVMLSAAAIKKV 220 (379)
T ss_dssp C-TTC-CCCHHHHTCSEEEECTTTTTCS-----CCCEEEEEECHHHHHHH
T ss_pred c-CCc-cccccccCCCEEEecchhhcCC-----CCceEEEEECHHHHHhh
Confidence 5 321 1233456899999999999974 35799999998765543
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=158.96 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
+...++++.+++++|.+ ..+..++|++|+..++.++. +++|+|+++++.|++... .++..|++++.+
T Consensus 52 ~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 122 (386)
T 1cs1_A 52 PTRDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122 (386)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred ccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEe
Confidence 56788999999999988 55666888766544444432 578999999998875433 236779999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
|.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..... ..+..++.|+
T Consensus 123 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~--~~~~~~~~di 191 (386)
T 1cs1_A 123 DQG-----DEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREVGAVSVVDNTFLSPAL--QNPLALGADL 191 (386)
T ss_dssp CTT-----CHHHHHHHHH---TCCSEEEEECSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTTT--CCGGGGTCSE
T ss_pred CCC-----CHHHHHHhhc---cCCcEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCccccc--CCccccCceE
Confidence 863 8999999998 78899999998 5899998 799999999999999999998743322 2344678999
Q ss_pred EEeCCCcccCCCCCCCCCcc-eeEEEeC-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGM-GPIGVKS-HLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~-G~l~~~~-~l~~~lp 222 (302)
++.+.||+|+.| |+++ |++++++ ++++.+.
T Consensus 192 ~~~s~sK~~~~~----~~~~~G~~~~~~~~l~~~l~ 223 (386)
T 1cs1_A 192 VLHSCTKYLNGH----SDVVAGVVIAKDPDVVTELA 223 (386)
T ss_dssp EEEETTTTTTCS----SCCCCEEEEESSHHHHHHHH
T ss_pred EEEcCcccccCC----CCceeEEEEeCcHHHHHHHH
Confidence 999999998754 3444 9999986 6666553
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.7e-19 Score=162.80 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC--
Q psy7357 36 IGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR-- 112 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~-- 112 (302)
..++++.++++++.+..++. ..+|++++..++.++. +++|+|+++++.|+.+...++..|.+++.+|.+
T Consensus 63 ~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 134 (381)
T 1v2d_A 63 LPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV--------GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLT 134 (381)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEE
T ss_pred CHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCC
Confidence 45788888899998754444 4455566645544442 678999999999988888888899999999986
Q ss_pred -CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccccccc--CCCC--cc
Q psy7357 113 -KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQVGL--CRPG--DY 184 (302)
Q Consensus 113 -~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~~~--~~p~--~~ 184 (302)
+++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++|+|+++.....+. .+.. ..
T Consensus 135 ~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~ 211 (381)
T 1v2d_A 135 PEGFRLDLSALEKALT---PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAP 211 (381)
T ss_dssp TTEEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCT
T ss_pred CccCCcCHHHHHHhcC---cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcC
Confidence 456799999999997 78999999998 58998742 59999999999999999999874221111 1111 24
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.|+++.++||+|+.| |+++|++++++++++.+.
T Consensus 212 ~~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~ 245 (381)
T 1v2d_A 212 ERTFTVGSAGKRLEAT----GYRVGWIVGPKEFMPRLA 245 (381)
T ss_dssp TTEEEEEEHHHHTTCG----GGCCEEEECCTTTHHHHH
T ss_pred CCEEEEeechhhcCCc----ccceEEEEeCHHHHHHHH
Confidence 6899999999998744 678999999988877653
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=161.10 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=132.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+..|.+ ..++..++|+ +++..++.++. ++||+|+++++.|+.+...++..|.+
T Consensus 67 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 138 (385)
T 1b5p_A 67 PAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL--------DPGDEVIVLSPYWVSYPEMVRFAGGV 138 (385)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 3677788888888887777753 3455555554 55534443332 68899999999998888888899999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-ccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~-~ 178 (302)
++.+|.++ +..+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++|+|+++... ..+ .
T Consensus 139 ~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 215 (385)
T 1b5p_A 139 VVEVETLPEEGFVPDPERVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH 215 (385)
T ss_dssp EEEEECCGGGTTCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC
T ss_pred EEEeecCcccCCCCCHHHHHHhcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC
Confidence 99999975 34789999999997 67999999999 5899873 26999999999999999999987421 111 1
Q ss_pred CCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+...+ +.++++.+.+|+|+.| |.|+|++++++++++.+
T Consensus 216 ~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~~~l 256 (385)
T 1b5p_A 216 FSPGRVAPEHTLTVNGAAKAFAMT----GWRIGYACGPKEVIKAM 256 (385)
T ss_dssp CCGGGTCTTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHH
T ss_pred CCHHHcCCCCEEEEEechhhcCCc----ccceEEEEeCHHHHHHH
Confidence 111122 4578888888988754 78899999987765544
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-18 Score=161.51 Aligned_cols=164 Identities=19% Similarity=0.227 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~ 110 (302)
...++++++++++|.+ ..+...+|+.|+.++ ++ . -++||+|+++++.|+.+... ++..|.+++.+|
T Consensus 134 ~~~~l~~~la~~~g~~-~~i~~~sGt~al~~~---l~-~-----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 203 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD-RAFCFTSGMAALSAV---TH-L-----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 203 (464)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEESSHHHHHHHH---HT-T-----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCC-eEEEECCHHHHHHHH---HH-H-----hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 6889999999999988 445567787655322 22 1 16789999999998776542 456799999998
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+. ...|.++++|++
T Consensus 204 ~~-----d~~~l~~~i~---~~tk~v~l~~p~NptG~v~-~l~~i~~la~~~gi~livDea~~~g~--~~~~~~~~~div 272 (464)
T 1ibj_A 204 TT-----KLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKISEMAHAQGALVLVDNSIMSPV--LSRPLELGADIV 272 (464)
T ss_dssp TT-----SHHHHHHHCC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHTTTCEEEEECTTTCTT--TCCGGGTTCSEE
T ss_pred CC-----CHHHHHHHhc---cCceEEEEeCCCCCCCEee-cHHHHHHHHHHcCCEEEEECCCcccc--cCChhhcCCEEE
Confidence 73 8999999998 78999999999 5899998 79999999999999999999985432 234556789999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLP 222 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lp 222 (302)
+.++||+|+.| +|.++|++++++ ++.+.+.
T Consensus 273 ~~S~sK~~~g~---~Gl~~G~l~~~~~~l~~~l~ 303 (464)
T 1ibj_A 273 MHSATKFIAGH---SDVMAGVLAVKGEKLAKEVY 303 (464)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECSHHHHHHHH
T ss_pred EECCcccccCC---CCCcEEEEEEChHHHHHHHH
Confidence 99999999754 245679999985 6665553
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-18 Score=157.66 Aligned_cols=162 Identities=12% Similarity=0.154 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+. .+.+.+|++|+..++.+++ .+++|+|+++++.|+++...++..|++++.+|.++
T Consensus 38 ~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~~~~~~-------~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 109 (374)
T 3uwc_A 38 AELEKFEKRFAALHNAPH-AIGVGTGTDALAMSFKMLN-------IGAGDEVITCANTFIASVGAIVQAGATPVLVDSEN 109 (374)
T ss_dssp HHHHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred hhHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCC
Confidence 456788999999999884 4567788877655555541 16789999999999888778889999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCccCCcEEEeC
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDYGSDVSHLN 192 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~gaDiv~~~ 192 (302)
++.+|+++++++++ +++++|+.. |++|.+. |+++|.++|+++|+++|+|+++..+.. .....+.+ .|+++.+
T Consensus 110 ~~~~d~~~l~~~~~---~~~~~v~~~--n~~G~~~-~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~-~d~~~~s 182 (374)
T 3uwc_A 110 GYVIDPEKIEAAIT---DKTKAIMPV--HYTGNIA-DMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSW-GQFACFS 182 (374)
T ss_dssp TSSBCGGGTGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEE
T ss_pred CCCcCHHHHHHhCC---CCceEEEEe--CCcCCcC-CHHHHHHHHHHcCCEEEEeCCCccCceeCCeecccc-ccEEEEe
Confidence 78899999999998 688888833 5789988 799999999999999999998754321 11112222 6999999
Q ss_pred CC--cccCCCCCCCCCcceeEEEeC
Q psy7357 193 LH--KTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 193 ~h--K~l~~p~~~gGp~~G~l~~~~ 215 (302)
+| |+|+.+ +.+|++++++
T Consensus 183 ~~~~K~l~~~-----g~~g~~~~~~ 202 (374)
T 3uwc_A 183 LHPLKNLNVW-----SDAGVIITHS 202 (374)
T ss_dssp CSSSSSSCCS-----SCCEEEEESC
T ss_pred CCCCCcCCcc-----ceeEEEEeCC
Confidence 77 887521 2378888764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=157.71 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=135.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..|..+...++++.+++++|.+. .+..++|++++++++.++. +++|+|+++++.|+++...++..|.+++.
T Consensus 104 ~~G~~~~~~~l~~~la~~~g~~~-~i~~~sGs~a~~~al~~l~--------~~gd~vl~~~~~h~~~~~~~~~~g~~~~~ 174 (427)
T 2w8t_A 104 LNGTFHDHMEVEQALRDFYGTTG-AIVFSTGYMANLGIISTLA--------GKGEYVILDADSHASIYDGCQQGNAEIVR 174 (427)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHHS--------CTTCEEEEETTCCHHHHHHHHHSCSEEEE
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-eEEecCcHHHHHHHHHHhc--------CCCCEEEECCcccHHHHHHHHHcCCeeEE
Confidence 34556788999999999999974 5677889887655544432 67899999999998888778888999998
Q ss_pred eecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc--CC----
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL--CR---- 180 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~--~~---- 180 (302)
+|. .|+++|+++++++++ ++++|++++| |++|.+. ++++|.++|+++|+++|+|+++.....+. ..
T Consensus 175 ~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~-~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~ 248 (427)
T 2w8t_A 175 FRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIA-PLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEA 248 (427)
T ss_dssp ECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHH
T ss_pred eCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhh
Confidence 874 699999999985433 7899999998 6899998 79999999999999999999985432210 00
Q ss_pred CC-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 181 PG-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 181 p~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+ ..++|+++.++||+|+. |+ |++++++++++.+..
T Consensus 249 ~~~~~~~di~~~s~sK~~g~------~g-G~v~~~~~l~~~l~~ 285 (427)
T 2w8t_A 249 QGLEGQIDFVVGTFSKSVGT------VG-GFVVSNHPKFEAVRL 285 (427)
T ss_dssp TTCTTCCSEEEEESSSTTCS------CC-EEEEECCTTGGGGGG
T ss_pred cCCCcCCcEEEecchhhhcc------CC-CEEEeCHHHHHHHHH
Confidence 11 22579999999998862 33 999999988887643
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=158.80 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.+++++|.+.. +..++|+.|+..++.++. +++|+|+++++.|+++... ++..|++++.+
T Consensus 58 ~~~~~l~~~la~~~g~~~~-v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGKAA-LATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred hHHHHHHHHHHHHhCCCce-EEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 5678999999999998854 567778776655554432 6789999999998776543 36789999999
Q ss_pred -ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCC-cccccccCCCCccCC
Q psy7357 110 -SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGAN-MNAQVGLCRPGDYGS 186 (302)
Q Consensus 110 -~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~-~~~~~~~~~p~~~ga 186 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++|+|+++ ..+. ...+..+++
T Consensus 129 ~~~~-----d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~~a~~~g~~livD~~~~~~g~--~~~~~~~~~ 197 (421)
T 2ctz_A 129 SREE-----RPEEFLALTD---EKTRAWWVESIGNPALNIP-DLEALAQAAREKGVALIVDNTFGMGGY--LLRPLAWGA 197 (421)
T ss_dssp CTTC-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGGGGT--SCCGGGGTC
T ss_pred CCCC-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcccccc--cCCccccCC
Confidence 763 8999999998 78999999998 5899999 7999999999999999999988 5443 224556789
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
|+++.++||+|+.| |.++|.+++.
T Consensus 198 Di~~~s~~K~l~~~----g~~~G~~~~~ 221 (421)
T 2ctz_A 198 ALVTHSLTKWVGGH----GAVIAGAIVD 221 (421)
T ss_dssp SEEEEETTTTTTCS----SCCCCEEEEE
T ss_pred eEEEECCcccccCC----CCcEEEEEEe
Confidence 99999999999854 3345555554
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=157.78 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=134.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~~~g~~ 105 (302)
.+|..+..+++++++++++|.+..++ ...+|++|+..++.+++ +++|+|+++++.|+++.. .++..|.+
T Consensus 44 ~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~ 115 (359)
T 1svv_A 44 GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--------RPWEAVIATQLGHISTHETGAIEATGHK 115 (359)
T ss_dssp STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC--------CTTEEEEEETTSHHHHSSTTHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh--------CCCCEEEEcccchHHHHHHHHHhcCCCe
Confidence 45667889999999999999876444 45566676655555543 578999999999876654 46788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhcc----CCCeEEEEEecCCCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-ccccc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKN----KETLSCLMITYPSTFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVGL 178 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~~ 178 (302)
++.+|.+ ++.+|+++|+++++++ .+++++|++++||++|.+.+ ++++|.++|+++|+++|+|+++.. +.+..
T Consensus 116 ~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 194 (359)
T 1svv_A 116 VVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSP 194 (359)
T ss_dssp EEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTST
T ss_pred eEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCC
Confidence 9999985 7889999999999842 12489999999998998861 399999999999999999999721 11211
Q ss_pred C-CCCc----cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCC
Q psy7357 179 C-RPGD----YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~-~p~~----~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lp 222 (302)
. .+.. .+.|+++.++||+. || +.|++++++++++.+.
T Consensus 195 ~~~~~~~~~~~~~d~~~~s~~K~g-------~~~~~g~l~~~~~~~~~~~ 237 (359)
T 1svv_A 195 VNDLTLADIARLTDMFYIGATKAG-------GMFGEALIILNDALKPNAR 237 (359)
T ss_dssp TCCCCHHHHHHHCSEEEEECTTTT-------CSSCEEEEECSGGGCTTHH
T ss_pred CcchhhhhhhhcCCEEEEecccCC-------CCCceEEEEEcccHHHHHH
Confidence 1 1221 35799999999952 34 6799999988877664
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=161.23 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=133.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|..+...++++++++++|.+. .+..++|++|+..++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 83 ~~g~~~~~~~l~~~la~~~g~~~-v~~~~ggt~a~~~~~~~~~--------~~gd~V~~~~p~~~~~~~~~~~~g~~~~~ 153 (398)
T 3a2b_A 83 LNGTLDIHVELEEKLSAYVGKEA-AILFSTGFQSNLGPLSCLM--------GRNDYILLDERDHASIIDGSRLSFSKVIK 153 (398)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHSS--------CTTCEEEEETTCCHHHHHHHHHSSSEEEE
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEECCccCHHHHHHHHHcCCceEE
Confidence 46777899999999999999874 4456667776645444432 68899999999999888888899999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccc-cccc-CCCCc-
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNA-QVGL-CRPGD- 183 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~-~~~~-~~p~~- 183 (302)
+|. +|+++|+++++++++ ++++|++++| |++|.+. ++++|.++|+++|+++|+|+++... .... .....
T Consensus 154 v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~-~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 227 (398)
T 3a2b_A 154 YGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIV-NLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASH 227 (398)
T ss_dssp ECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHH
T ss_pred eCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhh
Confidence 986 689999999985332 7899999998 5899998 7999999999999999999998433 2110 11111
Q ss_pred c----CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 184 Y----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 184 ~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+ ++|+++.++||+|+ | +| |++++++++++.+.
T Consensus 228 ~~~~~~~di~~~s~sK~~~-~-----~G-G~~~~~~~~~~~l~ 263 (398)
T 3a2b_A 228 FGLNDDVDLIMGTFSKSLA-S-----LG-GFVAGDADVIDFLK 263 (398)
T ss_dssp HTCGGGCSEEEEESSSTTC-S-----SC-EEEEECHHHHHHHH
T ss_pred cCCCcCCeEEEeccccccc-C-----CC-cEEEeCHHHHHHHH
Confidence 1 36999999999887 2 23 99999987766553
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=160.76 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=128.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCC--EEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRN--VCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d--~Vlv~~~~hg~~~~~~~~~g 103 (302)
.+|..++.+++.+.+.+.+|.+ ..++..++|+ +++..++.++.. .+++| +|+++++.|..+...++..|
T Consensus 81 ~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~------~~~gd~~~Vl~~~p~~~~~~~~~~~~g 154 (437)
T 3g0t_A 81 LDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR------THKNREYGTLFIDPGFNLNKLQCRILG 154 (437)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTT------SCTTCSCCEEEEESCCHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhc------CCCCCccEEEEeCCCcHhHHHHHHHcC
Confidence 3455666666777776666643 3445545554 555344333310 04678 89999998887777788889
Q ss_pred CEEEEeecCCCC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-ccccc
Q psy7357 104 MSVEPVSVRKDG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVGL 178 (302)
Q Consensus 104 ~~v~~i~~~~~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~~ 178 (302)
.+++.+|+++++ .+|+++|++++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.. .....
T Consensus 155 ~~~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~ 232 (437)
T 3g0t_A 155 QKFESFDLFEYRGEKLREKLESYLQT--GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD 232 (437)
T ss_dssp CCCEEEEGGGGCTTHHHHHHHHHHTT--TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC
T ss_pred CEEEEEeecCCCCccCHHHHHHHHhc--CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC
Confidence 999999997544 6899999999942 67899999999 58998752 588899999999999999998742 11111
Q ss_pred ----------CCCC-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC-C
Q psy7357 179 ----------CRPG-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP-F 220 (302)
Q Consensus 179 ----------~~p~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~-~ 220 (302)
.... ..+.++++.+.||+++.| |.++|++++++++++ .
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~ 282 (437)
T 3g0t_A 233 YSHPGEPLYQPSVANYTDNYILALSSSKAFSYA----GQRIGVLMISGKLYERE 282 (437)
T ss_dssp CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCG----GGCCEEEEECHHHHHCB
T ss_pred cCcccccchhhccCCCCCcEEEEEcCccCCCCc----cceeEEEEECHHHhhhh
Confidence 1111 245678899999988744 789999999987776 5
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=160.15 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHhC--CCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 32 YEQLIGELETDLCEITG--YDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g--~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..++.+++++.+++.+| .+..++..++| ++++.+++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 64 ~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~ 135 (391)
T 3dzz_A 64 PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGRRVIS 135 (391)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCCEEEE
Confidence 35788889999999998 44445554545 565544544442 68899999999988877788899999999
Q ss_pred eecCC-CC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceec---cccHHHHHHHHHHhCCEEEEecCCccc-ccc--c
Q psy7357 109 VSVRK-DG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVF---EENITDVCELIHEHGGQVYLDGANMNA-QVG--L 178 (302)
Q Consensus 109 i~~~~-~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~---~~di~~I~~ia~~~g~llivD~a~~~~-~~~--~ 178 (302)
+|.++ ++ .+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|+++... ..+ .
T Consensus 136 ~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 212 (391)
T 3dzz_A 136 SDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNPIGYAWSEE-EVKRIAELCAKHQVLLISDEIHGDLVLTDEDI 212 (391)
T ss_dssp CCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred eeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCCCCcccCHH-HHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence 99863 33 4899999999973 68999999999 689998 6 7999999999999999999987421 111 1
Q ss_pred CCCCccC---Cc--EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 179 CRPGDYG---SD--VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 179 ~~p~~~g---aD--iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
.+...+. .| +++.++||+++.| |.++|+++++ +++.+.+.
T Consensus 213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~ 258 (391)
T 3dzz_A 213 TPAFTVDWDAKNWVVSLISPSKTFNLA----ALHAACAIIPNPDLRARAE 258 (391)
T ss_dssp CCGGGSCTTTGGGEEEEECSHHHHTCT----TTCCEEEECCSHHHHHHHH
T ss_pred eehhhcCccccCcEEEEEeChhhcccc----chhheEEEECCHHHHHHHH
Confidence 1111222 56 8899999999744 7899999997 77766553
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=159.62 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=130.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|..+...++++.+++++|++ ..+..++|++++..++.++. +++|+|+++++.|+.+...++..|.+++.+|
T Consensus 81 g~~~~~~~l~~~la~~~g~~-~~i~~~sGt~a~~~~~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~ 151 (384)
T 1bs0_A 81 GYSVVHQALEEELAEWLGYS-RALLFISGFAANQAVIAAMM--------AKEDRIAADRLSHASLLEAASLSPSQLRRFA 151 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTSSSEEEEEC
T ss_pred CChHHHHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHHHHhC--------CCCcEEEEcccccHHHHHHHHHcCCCEEEeC
Confidence 34467788999999999997 46777888876645444432 6789999999999888778888999999998
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc---cCCCC--cc
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG---LCRPG--DY 184 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~~p~--~~ 184 (302)
. .|+++|+++++++++++++|++++| |++|.+. ++++|.++|+++|+++|+|+++...... ...+. ..
T Consensus 152 ~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 225 (384)
T 1bs0_A 152 H-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV 225 (384)
T ss_dssp T-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC
T ss_pred C-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC
Confidence 4 5899999999854345888999988 5899999 7999999999999999999997533211 00011 13
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+.|+++.+.||+|+ | +| |++++++++++.+
T Consensus 226 ~~di~~~s~sK~~~-~-----~G-G~~~~~~~~~~~l 255 (384)
T 1bs0_A 226 KPELLVVTFGKGFG-V-----SG-AAVLCSSTVADYL 255 (384)
T ss_dssp CCSEEEEESSSTTS-S-----CC-EEEEECHHHHHHH
T ss_pred CCcEEEeeccchhh-c-----cC-cEEEeCHHHHHHH
Confidence 57999999999986 2 23 9999998776654
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=158.33 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.+++++|.+ ..+..++|++|+.+++. +. ++||+|+++++.|+.+... ++..|++++.+
T Consensus 67 p~~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~-l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v 136 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK-YCLAFASGLAATVTITH-LL--------KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFV 136 (403)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHT-TS--------CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEE
T ss_pred chHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHH-Hh--------CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEE
Confidence 45688999999999987 45667788765533333 21 6789999999998764332 35679999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC-CEEEEecCCcccccccCCCCccCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG-GQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g-~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++|+++| +++++|+++.... ...|.++++|
T Consensus 137 ~~~-----d~~~l~~~i~---~~t~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~~livD~~~~~~~--~~~~~~~~~d 205 (403)
T 3cog_A 137 DCS-----KIKLLEAAIT---PETKLVWIETPTNPTQKVI-DIEGCAHIVHKHGDIILVVDNTFMSPY--FQRPLALGAD 205 (403)
T ss_dssp CTT-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTSSSCCEEEEECTTTCTT--TCCTTTTTCS
T ss_pred CCC-----CHHHHHHhcC---cCCeEEEEECCCCCCCeee-CHHHHHHHHHHcCCCEEEEECCCcccc--cCCccccCCe
Confidence 974 8999999998 78999999999 5899999 7999999999999 9999999874332 2345567899
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
+++.++||+|+.| ||-++|+++++ +++.+++
T Consensus 206 iv~~S~sK~~~g~---~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 206 ISMYSATKYMNGH---SDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp EEEEETTTTTTCS---SCCCCEEEEECCHHHHHHH
T ss_pred EEEEcChhhccCC---CCCeEEEEEECcHHHHHHH
Confidence 9999999999743 22347999996 5665554
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-17 Score=152.54 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+. .+.+++|++|+..++.+++. ....+.+++|+|+++.+.|+++...+...|++++.+|+++
T Consensus 34 ~~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~al~~~~~-~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~ 111 (390)
T 3b8x_A 34 EYVKQYETQFAKTFGSKY-AVMVSSGSTANLLMIAALFF-TKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI 111 (390)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTTS-SSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHHh-hhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc
Confidence 457889999999999984 56778888766555554410 0000125789999999999888777888999999999987
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC--cEEE
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS--DVSH 190 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga--Div~ 190 (302)
+ +.+|+++|+++++ +++++|++++ ++|... |+++|.++|+++|+++|+|+++..+... ....+|. |+.+
T Consensus 112 ~~~~~d~~~l~~~i~---~~~~~v~~~~--~~g~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~g~~~~~~~ 183 (390)
T 3b8x_A 112 NTLNIDIESLKEAVT---DSTKAILTVN--LLGNPN-NFDEINKIIGGRDIILLEDNCESMGATF--NNKCAGTFGLMGT 183 (390)
T ss_dssp TTCSBCHHHHHHHCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHTTSCCEEEEECTTCTTCEE--TTEETTSSSSEEE
T ss_pred cccCcCHHHHHHHhC---cCCeEEEEEC--CccChh-hHHHHHHHHHHcCCEEEEECcCcccCEE--CCcccccccceEE
Confidence 5 8899999999998 7899999985 557777 8999999999999999999998643322 2223444 6666
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeC-CC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKS-HL 217 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~-~l 217 (302)
++ |..++. ++++.+|++++++ ++
T Consensus 184 ~s--~~~~k~--~~~g~gG~~~~~~~~l 207 (390)
T 3b8x_A 184 FS--SFYSNH--IATMEGGCIVTDDEEI 207 (390)
T ss_dssp EE--CCTTSS--SCSSSCEEEEESCHHH
T ss_pred EE--ccCCCC--CccCCceEEEeCCHHH
Confidence 54 222222 2233449999886 44
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=157.80 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=127.1
Q ss_pred HHHHHHHHHHh-CCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 37 GELETDLCEIT-GYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 37 ~e~~~~l~~l~-g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.++++.+++++ +.+..++. .++|++|+..++.++. +++|+|+++++.|+.+...++..|.+++.+|++++
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEE 137 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGG
T ss_pred HHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEEEEEecccc
Confidence 46677777776 45544444 4445566655555443 68999999999998877788889999999998743
Q ss_pred --CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccc-ccccCCC-CccCC
Q psy7357 115 --GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA-QVGLCRP-GDYGS 186 (302)
Q Consensus 115 --g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~-~~~~~~p-~~~ga 186 (302)
..+|+++|+++++ +++++|++++| |++|.+. + +++|.++|+++|+++|+|+++... ....... ..++.
T Consensus 138 ~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 213 (375)
T 3op7_A 138 NGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDK 213 (375)
T ss_dssp GTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTT
T ss_pred CCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCC
Confidence 3589999999998 78999999999 5899886 6 999999999999999999986421 1111111 12345
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++++.+.+|+++.| |.++|++++++++++.+..
T Consensus 214 ~i~~~s~sK~~~~~----G~r~G~v~~~~~l~~~~~~ 246 (375)
T 3op7_A 214 GIAVNSLSKTYSLP----GIRIGWVAANHQVTDILRD 246 (375)
T ss_dssp EEEEEESSSSSSCG----GGCCEEEECCHHHHHHHTT
T ss_pred EEEEeEChhhcCCc----ccceEEEEeCHHHHHHHHH
Confidence 68888888988644 7889999998877766643
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=161.37 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=135.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+++.+.+++.+|.+ .. ++..+ +|++++..++.++. +++|+|+++++.|+.+...++..|.
T Consensus 66 ~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~ 137 (386)
T 1u08_A 66 MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV--------RNGDEVICFDPSYDSYAPAIALSGG 137 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCC
Confidence 3577788888888888888853 33 44444 44555544444432 5789999999999888888888999
Q ss_pred EEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-ccc--
Q psy7357 105 SVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVG-- 177 (302)
Q Consensus 105 ~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~-- 177 (302)
+++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++|+|+++... ..+
T Consensus 138 ~~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~ 214 (386)
T 1u08_A 138 IVKRMALQPPHFRVDWQEFAALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG 214 (386)
T ss_dssp EEEEEECCTTTCCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC
T ss_pred EEEEeecCcccCcCCHHHHHHhhc---ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCC
Confidence 999999876 46799999999997 78999999999 58998742 5899999999999999999987421 111
Q ss_pred cCCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 LCRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.. ..+.|+++.++||+|+.| |.++|++++++++++.+.
T Consensus 215 ~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~ 259 (386)
T 1u08_A 215 HASVLAHPQLRERAVAVSSFGKTYHMT----GWKVGYCVAPAPISAEIR 259 (386)
T ss_dssp CCCGGGSHHHHTTEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHHH
T ss_pred CcChhcccCccCcEEEEecchhhcCCc----ccceEEEEcCHHHHHHHH
Confidence 11111 346799999999988744 678999999987766553
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=157.02 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
+...++++.+++++|.+. .+...+|++|+..++.++. +++|+|+++++.|+++... ++..|++++.+
T Consensus 56 ~~~~~l~~~la~~~g~~~-~~~~~~gt~a~~~al~~l~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~ 126 (412)
T 2cb1_A 56 PTAKALEERLKALEGALE-AVVLASGQAATFAALLALL--------RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYV 126 (412)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHTTC--------CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 568899999999999884 4456677776655554432 5789999999998755433 34579999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++.... ....+..++.|+
T Consensus 127 ~~------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~l~~~~~~~li~D~~~~~~~-~~~~~~~~~~di 195 (412)
T 2cb1_A 127 DP------EPEAVREALS---AKTRAVFVETVANPALLVP-DLEALATLAEEAGVALVVDNTFGAAG-ALCRPLAWGAHV 195 (412)
T ss_dssp CS------SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGTTT-TSCCGGGGTCSE
T ss_pred CC------CHHHHHHHhc---cCCeEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCcccc-ccCCccccCCeE
Confidence 86 3899999998 78999999998 5899999 79999999999999999999874331 112455678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
++.++||+|+.| |.++|++++.+
T Consensus 196 ~~~S~~K~~~~~----~~~~G~~~~~~ 218 (412)
T 2cb1_A 196 VVESLTKWASGH----GSVLGGAVLSR 218 (412)
T ss_dssp EEEETTTTTTCS----SCCCCEEEEEC
T ss_pred EEECCcccccCC----CCcEEEEEEec
Confidence 999999999754 33456666554
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=162.89 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=130.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|..++..++++.+++++|.+. .+..++|++|+..++.++. .+++|+|+++++.|.++...+...|++++.
T Consensus 37 ~~g~~~l~~~l~~~la~~~g~~~-~i~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~ 108 (418)
T 2c81_A 37 WTGEESMERKFAKAFADFNGVPY-CVPTTSGSTALMLALEALG-------IGEGDEVIVPSLTWIATATAVLNVNALPVF 108 (418)
T ss_dssp CCSSCCHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHhHHHHHHHcCCEEEE
Confidence 45667788999999999999984 5667778776655554441 157899999999998888888899999999
Q ss_pred eecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc-cccCCCCccCC
Q psy7357 109 VSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ-VGLCRPGDYGS 186 (302)
Q Consensus 109 i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~-~~~~~p~~~ga 186 (302)
+|+++ ++.+|+++|+++++ +++++|+++| ++|... |+++|.++|+++|+++|+|+++.... ......+.++
T Consensus 109 ~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~- 181 (418)
T 2c81_A 109 VDVEADTYCIDPQLIKSAIT---DKTKAIIPVH--LFGSMA-NMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIG- 181 (418)
T ss_dssp ECBCTTTCSBCHHHHGGGCC---TTEEEECCBC--CTTCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSS-
T ss_pred EecCCCCCCcCHHHHHHhhC---CCCeEEEEeC--CcCCcc-cHHHHHHHHHHCCCEEEEECcccccCccCCEeccccc-
Confidence 99986 67899999999997 7899998876 568888 89999999999999999999985432 1111122332
Q ss_pred cEEEeCC--CcccCCCCCCCCCcceeEEEe-CCCCC
Q psy7357 187 DVSHLNL--HKTFCIPHGGGGPGMGPIGVK-SHLAP 219 (302)
Q Consensus 187 Div~~~~--hK~l~~p~~~gGp~~G~l~~~-~~l~~ 219 (302)
|+++.+. ||+|+ . | ++|+++++ +++.+
T Consensus 182 ~~~~~s~s~~K~~~----~-g-~~g~~~~~~~~l~~ 211 (418)
T 2c81_A 182 DIGAFSCQQGKVLT----A-G-EGGIIVTKNPRLFE 211 (418)
T ss_dssp SEEEEECCTTSSSC----S-S-SCEEEEESCHHHHH
T ss_pred ceEEEeccCCcccC----C-C-CeEEEEECCHHHHH
Confidence 5666655 89885 2 4 78999985 45543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=160.03 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHhC--CCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 33 EQLIGELETDLCEITG--YDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g--~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.++.+++++++++.+| .+...+..+ +|++|+.+++.++. +++|+|+++.+.|+.+...+...|.+++.+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~ 170 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS--------EKGDAVLINSPVYYPFARTIRLNDHRLVEN 170 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTEEEEEEEESCCHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCcHHHHHHHHHCCCEEEec
Confidence 5778889999999998 444445444 44456655555543 678999999999877777788899999999
Q ss_pred ecC-CCC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceec---cccHHHHHHHHHHhCCEEEEecCCcc-cccc----
Q psy7357 110 SVR-KDG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVF---EENITDVCELIHEHGGQVYLDGANMN-AQVG---- 177 (302)
Q Consensus 110 ~~~-~~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~---~~di~~I~~ia~~~g~llivD~a~~~-~~~~---- 177 (302)
|++ .++ .+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|+++.- ...+
T Consensus 171 ~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~nptG~~~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 247 (421)
T 3l8a_A 171 SLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHNPGGRVWDND-DLIKIAELCKKHGVILVSDEIHQDLALFGNTHH 247 (421)
T ss_dssp ECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCCCCCCcCCHH-HHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 986 344 6899999999974 68999999999 589988 6 799999999999999999998741 1111
Q ss_pred -c--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 178 -L--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 178 -~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
+ ..+...+.++++.+.+|+|+.+ |.++|+++++ +++.+.+
T Consensus 248 ~~~~~~~~~~~~~i~~~s~sK~~g~~----G~~~G~~~~~~~~l~~~~ 291 (421)
T 3l8a_A 248 SLNTLDASYKDFTIILSSATKTFNIA----GTKNSFAIIQNESLRRKF 291 (421)
T ss_dssp CGGGSCTTGGGTEEEEECSHHHHTCG----GGCCEEEECCSHHHHHHH
T ss_pred cHHHcCchhcCcEEEEEeChhhccCc----hhheEeEEcCCHHHHHHH
Confidence 0 0112234558888889998743 7889999998 6776655
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=163.37 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
+...++++.+++++|.+ ..+..++|++|+..++. +. ++||+|+++++.|+.... .++..|++++.+
T Consensus 55 ~~~~~lr~~la~~~g~~-~~i~~~sGt~a~~~al~-~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 124 (393)
T 1n8p_A 55 PNRENLERAVAALENAQ-YGLAFSSGSATTATILQ-SL--------PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT 124 (393)
T ss_dssp HHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHH-TS--------CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred hhHHHHHHHHHHHhCCC-cEEEECChHHHHHHHHH-Hc--------CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEe
Confidence 56889999999999998 45667788765534333 21 578999999998764433 345679999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh----CCEEEEecCCcccccccCCCCcc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH----GGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~----g~llivD~a~~~~~~~~~~p~~~ 184 (302)
|.+ | ++|+++++ ++|++|++++| |++|.+. |+++|+++|+++ |+++|+|+++..... .++..+
T Consensus 125 ~~~-----d-~~l~~~i~---~~t~lv~~~~~~nptG~~~-~l~~i~~la~~~~~~~~~~livD~a~~~~~~--~~~~~~ 192 (393)
T 1n8p_A 125 NDL-----L-NDLPQLIK---ENTKLVWIETPTNPTLKVT-DIQKVADLIKKHAAGQDVILVVDNTFLSPYI--SNPLNF 192 (393)
T ss_dssp SSH-----H-HHHHHHSC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTTTTCEEEEECTTTHHHH--CCGGGG
T ss_pred CCC-----h-HHHHHhcc---cCceEEEEECCCCCcceec-CHHHHHHHHHHhCCCCCCEEEEeCCcccccc--CCHHHc
Confidence 874 7 89999997 78999999998 5899999 799999999999 999999999854332 255667
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcc-eeEEEe-CCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGM-GPIGVK-SHLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~-G~l~~~-~~l~~~l 221 (302)
++|+++.++||+++.+ |.++ |+++++ +++++.+
T Consensus 193 ~~di~~~S~sK~~g~~----G~rigG~~~~~~~~~~~~l 227 (393)
T 1n8p_A 193 GADIVVHSATKYINGH----SDVVLGVLATNNKPLYERL 227 (393)
T ss_dssp TCSEEEEETTTTTTCS----SCCCCEEEEESCHHHHHHH
T ss_pred CCeEEEEECcccccCC----CCceeEEEEeCCHHHHHHH
Confidence 8999999999988632 4446 999986 5666554
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=166.32 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=135.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+++.+|.+ ..++..++| ++|+.+++.++. ++||+|+++++.|+.+...++..|.+
T Consensus 94 ~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 165 (447)
T 3b46_A 94 TRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL--------NAGDEVIVFEPFFDQYIPNIELCGGK 165 (447)
T ss_dssp TTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc--------CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 4577788888888887777754 234555555 465545554442 67899999999998888888899999
Q ss_pred EEEeecCCC------------CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecC
Q psy7357 106 VEPVSVRKD------------GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 106 v~~i~~~~~------------g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a 170 (302)
++.+|.+++ +.+|+++|+++++ +++++|++++| |++|.+. +++++|+++|+++|+++|+|++
T Consensus 166 ~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~ 242 (447)
T 3b46_A 166 VVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEV 242 (447)
T ss_dssp EEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred EEEEeCCCccccccccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEecc
Confidence 999998643 4689999999997 78999999999 5899872 2799999999999999999998
Q ss_pred Cccc-ccc-cCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 171 NMNA-QVG-LCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 171 ~~~~-~~~-~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
+... ..+ ..+ ++.++.|+++.+.||+|+.| |+++|++++ ++++++.+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~----G~riG~~~~~~~~l~~~l 297 (447)
T 3b46_A 243 YEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT----GWRIGWVLSLNAELLSYA 297 (447)
T ss_dssp TTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT----TSCCEEEECSCHHHHHHH
T ss_pred chhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc----chhhEEEEeCCHHHHHHH
Confidence 7421 111 111 12346799999999998754 789999999 77776655
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=162.71 Aligned_cols=178 Identities=16% Similarity=0.198 Sum_probs=135.3
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+++.+.+.+.+|. +.. ++..++| ++++.+++.++. +++|+|+++++.|+.+...++..|.
T Consensus 76 ~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~ 147 (429)
T 1yiz_A 76 GFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV--------DEGDEVIIIEPFFDCYEPMVKAAGG 147 (429)
T ss_dssp SSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCC
Confidence 367778888888888888884 333 4544555 455544444432 5789999999999888888888999
Q ss_pred EEEEeecCCC----------CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCC
Q psy7357 105 SVEPVSVRKD----------GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 105 ~v~~i~~~~~----------g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~ 171 (302)
+++.+|.+++ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~ 224 (429)
T 1yiz_A 148 IPRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVY 224 (429)
T ss_dssp EEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred EEEEEeCCcccccccccccCcccCHHHHHHHhc---cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 9999998753 4689999999997 78999999999 58998752 5999999999999999999987
Q ss_pred ccc-ccc-----cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 MNA-QVG-----LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~~-~~~-----~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
... ..+ +.. ++..+.|+++.++||+|+.| |.++|++++++++++.+
T Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l 277 (429)
T 1yiz_A 225 EHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLT----GWKIGWAYGPEALLKNL 277 (429)
T ss_dssp TTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCG----GGCCEEEESCHHHHHHH
T ss_pred cccccCCCCCcChhhccCCcCceEEEecchhccCCC----CcceEEEEeCHHHHHHH
Confidence 421 111 111 12456799999999988743 67899999998776655
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=155.49 Aligned_cols=164 Identities=21% Similarity=0.211 Sum_probs=121.1
Q ss_pred HHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH---HHHHhCCC--EEEEeecCC
Q psy7357 39 LETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP---ASAQMAGM--SVEPVSVRK 113 (302)
Q Consensus 39 ~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~---~~~~~~g~--~v~~i~~~~ 113 (302)
.++++++++|.+..++..++|+.|+..++.++. +++|+|+++++.|+.+. ..++..|. +++.+++++
T Consensus 74 ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 145 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQPHSGSQANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP 145 (407)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT
T ss_pred HHHHHHHHhCCCcceEEecchHHHHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc
Confidence 556999999999877778888876655554442 67899999999998773 33334444 555555443
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc--cc-CCCCccCCcEE
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV--GL-CRPGDYGSDVS 189 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~--~~-~~p~~~gaDiv 189 (302)
++.+|+++|++++++ +++++|++++|+. |... |+++|.++|+++|+++|+|+++..+.. +. ..+.. ..|++
T Consensus 146 ~~~~~d~~~l~~~l~~--~~~~~v~~~~p~~-~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~ 220 (407)
T 2dkj_A 146 DTELIDLEEVRRLALE--HRPKVIVAGASAY-PRFW-DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVV 220 (407)
T ss_dssp TTSSCCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEE
T ss_pred ccCccCHHHHHHHHhh--cCCeEEEEecccc-CCCC-CHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEE
Confidence 578999999999973 2678888888865 4666 799999999999999999999865332 11 11222 37999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
+.++||+++ ||++|+++++ +++++.+
T Consensus 221 ~~s~sK~l~------g~~~G~~~~~~~~~~~~l 247 (407)
T 2dkj_A 221 TSTTHKTLR------GPRGGLILSNDPELGKRI 247 (407)
T ss_dssp EEESSGGGC------CCSCEEEEESCHHHHHHH
T ss_pred EEeccccCC------CCCceEEEECCHHHHHHH
Confidence 999999765 6778999999 6776554
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-19 Score=176.85 Aligned_cols=169 Identities=18% Similarity=0.143 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH-HHhCCCEEEEeec
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS-AQMAGMSVEPVSV 111 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~-~~~~g~~v~~i~~ 111 (302)
..+.++|+.+++++|++.+. ...+|+ .++.++++++. ++||+||++++.|.++... +...|++++.++.
T Consensus 173 ~~i~e~e~~lA~~~gae~~i-~v~nGtt~an~~ai~al~--------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~ 243 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADKTY-FVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQT 243 (730)
T ss_dssp THHHHHHHHHHHHTTCSEEE-EESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHHHHCCCcEE-EECCHHHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeC
Confidence 57899999999999999864 455565 66656666554 6899999999999877665 7788999999986
Q ss_pred CCC-----CCCCHHHH-----HHHHhccCCC---e----EEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 112 RKD-----GTIDFSDL-----ETKVKKNKET---L----SCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 112 ~~~-----g~iD~~~l-----~~~i~~~~~~---t----~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
+.+ |.+|+++| +++++++.++ + ++|++++||++|.+. |+++|+++||++|+++++|+|+...
T Consensus 244 ~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~-dl~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 244 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIY-NAHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEE-CHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeec-CHHHHHHHHHHcCCeEEEEcccccc
Confidence 432 34788888 9998742111 4 889999999999998 8999999999999999999997432
Q ss_pred --ccc-c--CCCC---ccCCc----EEEeCCCcccCCCCCCCCC-cceeEEEeCCCC
Q psy7357 175 --QVG-L--CRPG---DYGSD----VSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLA 218 (302)
Q Consensus 175 --~~~-~--~~p~---~~gaD----iv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~ 218 (302)
.+. . ..+. .+++| +++.++||+|+ || ++|++.++++.+
T Consensus 323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~------g~~~gg~I~v~~~~l 373 (730)
T 1c4k_A 323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA------GFSQTSQIHKKDSHI 373 (730)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS------CCTTCEEEEEECGGG
T ss_pred cccCcccCCcCcccccccCCCCCCEEEEECCCCCCC------CCCCEEEEEecchhh
Confidence 211 1 1222 34788 99999999876 55 467887876543
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=154.16 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+. .+..++|++|+..++.+++.. .++||+|+++++.|+++...+...|++++.+++++
T Consensus 32 ~~~~~l~~~la~~~~~~~-v~~~~ggt~al~~~~~~~~~~-----~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 105 (375)
T 2fnu_A 32 KRSLLFEEALCEFLGVKH-ALVFNSATSALLTLYRNFSEF-----SADRNEIITTPISFVATANMLLESGYTPVFAGIKN 105 (375)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHSSCC-----CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCT
T ss_pred hHHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHhccc-----CCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCC
Confidence 357899999999999983 345666777665555544100 15789999999999888888888999999999988
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEE--E
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVS--H 190 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv--~ 190 (302)
++.+|+++|+++++ +++++|++++| +|.+. |+++|.++|+++|+++|+|+++..+.... ...+.++ |++ +
T Consensus 106 ~~~~d~~~l~~~i~---~~~~~v~~~~~--tG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s 178 (375)
T 2fnu_A 106 DGNIDELALEKLIN---ERTKAIVSVDY--AGKSV-EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFS 178 (375)
T ss_dssp TSSBCGGGSGGGCC---TTEEEEEEECG--GGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSS-SEEEEE
T ss_pred CCCCCHHHHHhhcC---cCceEEEEeCC--cCCcc-CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccC-CeEEEe
Confidence 78899999999997 78999999987 89998 79999999999999999999985432211 1123333 555 4
Q ss_pred eCCCcccCCCCCCCCCcceeEEEe--CCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVK--SHLAP 219 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~--~~l~~ 219 (302)
++.||+++ ||+|+++++ +++.+
T Consensus 179 ~s~~K~~~-------~g~g~~~~~~~~~~~~ 202 (375)
T 2fnu_A 179 FHAIKPIT-------TAEGGAVVTNDSELHE 202 (375)
T ss_dssp CCTTSSSC-------CSSCEEEEESCHHHHH
T ss_pred CCCCCCcc-------ccCceEEEeCCHHHHH
Confidence 44569874 346777774 44543
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=161.83 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCC---eeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYD---KISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~---~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+|..++.+++.+.+++.+|.+ ..++..++| ++++.+++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (404)
T 2o1b_A 85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--------NPGDYVLLPDPGYTDYLAGVLLADGK 156 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCSSHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 466667777777777777975 234444444 455545544432 57899999999998888888889999
Q ss_pred EEEeecCCCC-CCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-cc-cC
Q psy7357 106 VEPVSVRKDG-TIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ-VG-LC 179 (302)
Q Consensus 106 v~~i~~~~~g-~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~-~~-~~ 179 (302)
++.+|.++++ .+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++|+|+++.... .+ ..
T Consensus 157 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 233 (404)
T 2o1b_A 157 PVPLNLEPPHYLPDWSKVDSQII---DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNP 233 (404)
T ss_dssp EEEEECCTTTCCCCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCC
T ss_pred EEEeccCcccCcCCHHHHHHhhc---cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999987644 589999999997 688999999984 7998742 58999999999999999999874321 11 11
Q ss_pred CCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 180 RPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 180 ~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.. ..+.|+++.++||+|+.| |.++|++++++++++.+.
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~ 276 (404)
T 2o1b_A 234 SILASENGKDVAIEIYSLSKGYNMS----GFRVGFAVGNKDMIQALK 276 (404)
T ss_dssp CGGGSTTHHHHEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHH
T ss_pred ChhhcCCCCCCEEEEEecchhccCc----hhheEeEecCHHHHHHHH
Confidence 111 124578899999998744 788999999887776553
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=159.90 Aligned_cols=178 Identities=19% Similarity=0.201 Sum_probs=129.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe--e-eEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDK--I-SFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~--~-~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+|..++.+++.+.+.+.+|.+. . ++..++| +++...++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 134 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--------EPEDLLLLPEVAYPSYFGAARVASLR 134 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc--------CCCCEEEECCCCcHhHHHHHHHcCCE
Confidence 4666666666666666669852 2 4444445 455544444432 57899999999988777778889999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-cc-cCC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ-VG-LCR 180 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~-~~-~~~ 180 (302)
++.+|.+.+..+|+++++++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.... .+ ..+
T Consensus 135 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 211 (376)
T 2dou_A 135 TFLIPLREDGLADLKAVPEGVW---REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPS 211 (376)
T ss_dssp EEEECBCTTSSBCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCC
T ss_pred EEEeeCCCCCCCCHHHHHHhhc---cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence 9999983334689999999997 68899999998 58998742 48899999999999999999974321 11 111
Q ss_pred ----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 181 ----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 181 ----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+..+.++++.+.+|+|+.| |.++|++++++++++.+.
T Consensus 212 ~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~ 253 (376)
T 2dou_A 212 PLALPGAKERVVELFSLSKSYNLA----GFRLGFALGSEEALARLE 253 (376)
T ss_dssp GGGSTTGGGTEEEEEEHHHHHTCG----GGCCEEEEECHHHHHHHH
T ss_pred hhhcCCCCCcEEEEecchhhcCCh----hheeEEEecCHHHHHHHH
Confidence 12235678888889988744 788999999887776553
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-18 Score=158.24 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=129.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+.+|.+ ..++. ..+|++|+..++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 78 ~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~ 149 (409)
T 2gb3_A 78 SAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGVK 149 (409)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTCE
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 3566677777777777666643 33444 4445566645544432 67899999999998887778888999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecc--ccHHHHHHHHHHhCCEEEEecCCccccc-c-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQV-G-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~-~-~ 178 (302)
++.+|.++ +..+ +++|+++++ +++++|++++|+ ++|.+. +++++|.++|+++|+++|+|+++..... + .
T Consensus 150 ~~~v~~~~~~~~~~-~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~ 225 (409)
T 2gb3_A 150 LIPVTRRMEEGFAI-PQNLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEF 225 (409)
T ss_dssp EEEEECCGGGTSCC-CTTGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC
T ss_pred EEEeccCCCCCCcc-HHHHHHhhC---cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCC
Confidence 99999875 2234 888998887 689999999994 799873 2699999999999999999999753211 1 1
Q ss_pred CC--CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 179 CR--PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 179 ~~--p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
.. .+..+.|+++.++||+|+.| |.++|++++++ ++++.+
T Consensus 226 ~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~l~~~l 267 (409)
T 2gb3_A 226 ASALSIESDKVVVIDSVSKKFSAC----GARVGCLITRNEELISHA 267 (409)
T ss_dssp CCGGGSCCTTEEEEEESTTTTTCG----GGCCEEEECSCHHHHHHH
T ss_pred CCccccCCCCEEEEecchhccCCc----cceEEEEEECcHHHHHHH
Confidence 11 11135799999999998643 67899999998 776655
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=155.49 Aligned_cols=162 Identities=14% Similarity=0.203 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+. .+..++|++|+..++.++. .+++|+|+++++.|+++...++..|++++.+|+++
T Consensus 38 ~~~~~l~~~la~~~~~~~-~i~~~sGt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~ 109 (388)
T 1b9h_A 38 DEVNSFEREFAAHHGAAH-ALAVTNGTHALELALQVMG-------VGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDA 109 (388)
T ss_dssp SHHHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCC
Confidence 456788999999999884 5667788766645544431 15789999999999888888889999999999986
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
+ +.+|+++|+++++ +++++|+.. |++|.+. |+++|.++|+++|+++|+|+++..+...- ...+.++ |+++.
T Consensus 110 ~~~~~d~~~l~~~i~---~~~~~v~~~--n~tG~~~-~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~ 182 (388)
T 1b9h_A 110 ATYNLDPEAVAAAVT---PRTKVIMPV--HMAGLMA-DMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF 182 (388)
T ss_dssp TTCCBCHHHHHHHCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred CcCCCCHHHHHHhcC---cCceEEEEe--CCccCcC-CHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence 4 7899999999997 788888722 5789998 79999999999999999999985432210 1223444 45554
Q ss_pred C--CCcccCCCCCCCCCcceeEEEeCC
Q psy7357 192 N--LHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 192 ~--~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
+ .||+++ |+++|+++++++
T Consensus 183 S~s~~K~l~------g~~~G~~~~~~~ 203 (388)
T 1b9h_A 183 SFQNGKLMT------AGEGGAVVFPDG 203 (388)
T ss_dssp ECCTTSSSC------SSSCEEEEECTT
T ss_pred EccCCCccc------CCCeEEEEECCH
Confidence 4 556554 568899999875
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=153.52 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=125.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+.+|. +..++.. .+|++++..++.++. +++|+|+++.+.|..+...++..|.+
T Consensus 67 ~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~ 138 (391)
T 3h14_A 67 ALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF--------DSGDRVGIGAPGYPSYRQILRALGLV 138 (391)
T ss_dssp --CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCE
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCE
Confidence 345667777777777777774 3444444 444565544444432 67899999999988777788899999
Q ss_pred EEEeecCCCC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPVSVRKDG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i~~~~~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.+|.++++ .+|+++|+++ ++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.. ...+ .
T Consensus 139 ~~~v~~~~~~~~~~d~~~l~~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~ 212 (391)
T 3h14_A 139 PVDLPTAPENRLQPVPADFAGL------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA 212 (391)
T ss_dssp EEEEECCGGGTTSCCHHHHTTS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC
T ss_pred EEEeecCcccCCCCCHHHHHhc------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC
Confidence 9999997643 6799988765 5678899999 58998752 499999999999999999998742 1111 1
Q ss_pred CCCCc-cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPGD-YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~~-~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..... .+.++++.+.+|+++.| |.++|++.+++++++.+.
T Consensus 213 ~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~ 253 (391)
T 3h14_A 213 VTALELTDECYVINSFSKYFSMT----GWRVGWMVVPEDQVRVVE 253 (391)
T ss_dssp CCGGGTCSSSEEEEESSSTTCCT----TSCCEEEECCGGGHHHHH
T ss_pred cChhhcCCCEEEEEechhccCCc----cceeEEEEeCHHHHHHHH
Confidence 11112 23467888888888644 789999999988776653
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-18 Score=156.82 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..++++.+++++|.+..++..++|+ ++...++.++. ++| |+|+++++.|+.+...++..|.+++.+|.++
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~--------~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 131 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC--------EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLD 131 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCT
T ss_pred HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh--------CCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCC
Confidence 4688889999999986666666665 44434444332 567 9999999999888888888899999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc--cHHHHHHHHHHhCCEEEEecCCcccc--cccCC-CCccCCc
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ--VGLCR-PGDYGSD 187 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~--~~~~~-p~~~gaD 187 (302)
++.+|+++++++++ ++++|++++|| ++|.+.+ ++++|+++|+ +|+++|+|+++.... ..+.. ...++.+
T Consensus 132 ~~~~d~~~l~~~i~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 206 (356)
T 1fg7_A 132 NWQLDLQGISDKLD----GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHL 206 (356)
T ss_dssp TSCCCHHHHHTSCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTE
T ss_pred CCCCCHHHHHHHhc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCE
Confidence 77899999998875 68899999995 8998851 3555556666 899999999974211 11111 1334567
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++.+.+|+|+.| |.++|++++++++++.+
T Consensus 207 i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l 236 (356)
T 1fg7_A 207 AILRTLSKAFALA----GLRCGFTLANEEVINLL 236 (356)
T ss_dssp EEEEESSSTTCCG----GGCCEEEEECHHHHHHH
T ss_pred EEEecchHhhcCc----hhhhEEEEeCHHHHHHH
Confidence 8888888988644 78999999998776655
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=158.29 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
.+...++++.+++++|.+ ..+..++|++++..++.++. +++|+|+++++.|+++...++..|.+++.+|.
T Consensus 89 ~~~~~~l~~~la~~~g~~-~~i~~~sGs~a~~~~~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~- 158 (401)
T 1fc4_A 89 QDSHKELEQKLAAFLGME-DAILYSSCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRLCKAKRYRYAN- 158 (401)
T ss_dssp BHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHTTHHHHC--------CTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-
T ss_pred cHHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHHHHc--------CCCCEEEEcchhHHHHHHHHHHcCCceEEECC-
Confidence 356788999999999998 56777889876644444432 67899999999998777778889999998874
Q ss_pred CCCCCCHHHHHHHHhccCC---CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CC-----CC
Q psy7357 113 KDGTIDFSDLETKVKKNKE---TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CR-----PG 182 (302)
Q Consensus 113 ~~g~iD~~~l~~~i~~~~~---~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~-----p~ 182 (302)
.|+++|++++++.++ ++++|++++| |++|.+. ++++|.++|+++|+++|+|+++....... .. .+
T Consensus 159 ----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~ 233 (401)
T 1fc4_A 159 ----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA-NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCD 233 (401)
T ss_dssp ----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTT
T ss_pred ----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCC-CHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcC
Confidence 589999999974222 7899999998 6899998 69999999999999999999974333210 00 11
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.|+++.++||+|+. ++ +|++++++++++.+.
T Consensus 234 ~~~~~di~~~s~sK~~~~-----~~-gG~~~~~~~~~~~l~ 268 (401)
T 1fc4_A 234 VMGRVDIITGTLGKALGG-----AS-GGYTAARKEVVEWLR 268 (401)
T ss_dssp CTTCCSEEEEESSSTTCS-----SS-CEEEEECHHHHHHHH
T ss_pred CCcCCcEEEecchhhccC-----CC-CEEEEcCHHHHHHHH
Confidence 12579999999999853 23 399999987766553
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-18 Score=158.94 Aligned_cols=180 Identities=16% Similarity=0.088 Sum_probs=133.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---------eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---------ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---------~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~ 98 (302)
.+|..++++++.+.+++.+|.+. .++..++|+ ++...++.++. ++||+|+++++.|+.+...
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--------NPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHH
Confidence 68988999999999999899764 456666665 55544444432 6789999999998877778
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccC---------CCeEEEEE-ecC-CCceeccc--cHHHHHHHHHHhCCEE
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNK---------ETLSCLMI-TYP-STFGVFEE--NITDVCELIHEHGGQV 165 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~---------~~t~~V~i-~~P-n~~G~~~~--di~~I~~ia~~~g~ll 165 (302)
++..|.+++.+|.+++| +|+++|++++++++ +++++|++ .+| |++|.+.+ ++++|.++|+++|+++
T Consensus 149 ~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l 227 (425)
T 2r2n_A 149 LHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI 227 (425)
T ss_dssp HGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 88899999999987655 89999999997432 45777766 466 68998752 4669999999999999
Q ss_pred EEecCCcc-ccccc--CCC---CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 166 YLDGANMN-AQVGL--CRP---GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 166 ivD~a~~~-~~~~~--~~p---~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|+|.++.. ...+. .+. ...+.++++.+.+|+|+ | |.++|++++++++++.+.
T Consensus 228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~----GlRiG~~~~~~~l~~~l~ 285 (425)
T 2r2n_A 228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S----GLRIGFLTGPKPLIERVI 285 (425)
T ss_dssp EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S----TTCCEEEEEEHHHHHHHH
T ss_pred EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C----ccceEEEecCHHHHHHHH
Confidence 99998742 11111 111 12234588888899886 5 789999999987766553
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=160.46 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=134.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+++.+.+.+.+|.+ .. ++..++| ++|+..++.++. +++|+|+++++.|+.+...++..|.
T Consensus 61 ~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~--------~~gd~Vl~~~~~y~~~~~~~~~~g~ 132 (411)
T 2o0r_A 61 GPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV--------EPGSEVLLIEPFYDSYSPVVAMAGA 132 (411)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHcCC
Confidence 3567788888888888888853 33 4444444 455544444432 5789999999999888888889999
Q ss_pred EEEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-cc
Q psy7357 105 SVEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ-VG 177 (302)
Q Consensus 105 ~v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~-~~ 177 (302)
+++.+|.+++ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.... .+
T Consensus 133 ~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g 209 (411)
T 2o0r_A 133 HRVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDH 209 (411)
T ss_dssp EEEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTT
T ss_pred EEEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 9999998653 4689999999997 78999999999 58998741 47999999999999999999874221 11
Q ss_pred --cCC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 --LCR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 --~~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+ +...+.|+++.++||+|+.| |.++|++++++++++.+.
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~ 256 (411)
T 2o0r_A 210 ARHLPLAGFDGMAERTITISSAAKMFNCT----GWKIGWACGPAELIAGVR 256 (411)
T ss_dssp CCCCCGGGSTTTGGGEEEEEEHHHHTTCT----TTCEEEEECCHHHHHHHH
T ss_pred CCCcChhhccCCCCCEEEEeechhhcCCc----cceEEEEeeCHHHHHHHH
Confidence 001 11256799999999988744 678999999887766553
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=154.49 Aligned_cols=161 Identities=18% Similarity=0.143 Sum_probs=120.2
Q ss_pred HHHHHHHHH-HHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 35 LIGELETDL-CEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 35 ~~~e~~~~l-~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
...++++.+ ++++| .+. .+.+++|+.|+..++.++. .++||+|+++++.|.++...+...|++++.++++
T Consensus 37 ~~~~l~~~~~a~~~g~~~~-~v~~~sgt~al~~al~~l~-------~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~ 108 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQNRGA-VTTVANATLGLMAAIQLKK-------RKKGKYALMPSFTFPATPLAAIWCGLEPYFIDIS 108 (377)
T ss_dssp HHHHHHHHHHHHTSTTCSE-EEEESCHHHHHHHHHHHHS-------CTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 477899999 99999 444 4667788877655554431 1689999999999998888888999999999998
Q ss_pred C-CCCCCHHHHHHHHhccCCC--eEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcE
Q psy7357 113 K-DGTIDFSDLETKVKKNKET--LSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDV 188 (302)
Q Consensus 113 ~-~g~iD~~~l~~~i~~~~~~--t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDi 188 (302)
+ ++.+|++++++++.+ ++ |++|+.+| ++|... |+++|.++|+ +|+++|+|++|..+.... ...+....|+
T Consensus 109 ~~~~~~d~~~l~~~i~~--~~~~tk~v~~~~--~~G~~~-~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~ 182 (377)
T 3ju7_A 109 IDDWYMDKTVLWDKIEE--LKEEVAIVVPYA--TFGSWM-NLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGM 182 (377)
T ss_dssp TTTCSBCHHHHHHHHHH--HGGGEEEECCBC--GGGBCC-CCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSE
T ss_pred CccCCcCHHHHHHHHhc--CCCCceEEEEEC--CCCCcc-CHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcE
Confidence 4 678999999999832 45 99888654 579988 7999999999 999999999985432211 1121222577
Q ss_pred EEeC--CCcccCCCCCCCCCcceeEEEeC
Q psy7357 189 SHLN--LHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 189 v~~~--~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
.+.| .||+|+ ++.+|++++++
T Consensus 183 ~~~S~~~~K~l~------~g~gG~~~~~~ 205 (377)
T 3ju7_A 183 IIYSFHATKPFG------IGEGGLIYSKN 205 (377)
T ss_dssp EEEECBTTSSSC------CBSCEEEEESC
T ss_pred EEEECCCCCcCC------CCCcEEEEECC
Confidence 6666 568776 23567888764
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=156.66 Aligned_cols=174 Identities=20% Similarity=0.231 Sum_probs=125.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCE-EEEcCCCCcccHHH----HHhC--
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNV-CLIPVSAHGTNPAS----AQMA-- 102 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~-Vlv~~~~hg~~~~~----~~~~-- 102 (302)
|..+...++++++++++|.+...+. .++|+.+..+++.+++.+.. .+ +++|+ |++++..|+++... ++..
T Consensus 68 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~-~~-~~gd~vii~~~~~~~~~~~~~~~~~~~~~~ 145 (416)
T 1qz9_A 68 GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQA-TR-SPERRVIVTETSNFPTDLYIAEGLADMLQQ 145 (416)
T ss_dssp SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHH-HH-STTCCEEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhccccc-cc-CCCCcEEEEcCCCCCchHHHHHHHHHHhcC
Confidence 3446788999999999998744444 34444555444444432110 00 24564 66667788765432 2233
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|++++.+|. +++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+.... ..
T Consensus 146 g~~~~~v~~-------~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~ 213 (416)
T 1qz9_A 146 GYTLRLVDS-------PEELPQAID---QDTAVVMLTHVNYKTGYMH-DMQALTALSHECGALAIWDLAHSAGAVPV-DL 213 (416)
T ss_dssp SCEEEEESS-------GGGHHHHCS---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CH
T ss_pred CceEEEeCc-------HHHHHHHhC---CCceEEEEeccccCccccc-CHHHHHHHHHHcCCEEEEEccccccCcCC-Ch
Confidence 999999986 788999997 78999999998 5899998 79999999999999999999985432211 12
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcc-eeEEEeCCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGM-GPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~-G~l~~~~~l~~~lpg 223 (302)
..+++|+++.++||+|. +||++ |++++++++++.+..
T Consensus 214 ~~~~~d~~~~s~~K~l~-----~g~~~~g~l~~~~~~~~~l~~ 251 (416)
T 1qz9_A 214 HQAGADYAIGCTYKYLN-----GGPGSQAFVWVSPQLCDLVPQ 251 (416)
T ss_dssp HHHTCSEEEECSSSTTC-----CCTTCCCEEEECTTTTTTSCC
T ss_pred hhcCCCEEEecCcccCC-----CCCCCeEEEEECHHHHhccCC
Confidence 24578999999999984 46888 999999988776643
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=160.56 Aligned_cols=178 Identities=20% Similarity=0.224 Sum_probs=134.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--e-eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--K-ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+++.+++.+.+|.+ . .++..++|+ +++..++.++. +++|+|+++++.|+.+...++..|.
T Consensus 66 ~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~ 137 (422)
T 3fvs_A 66 TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGG 137 (422)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc--------CCCCEEEEcCCCchhhHHHHHHcCC
Confidence 4577788888888888888865 3 345444454 55544444432 6889999999999888888889999
Q ss_pred EEEEeecCC----CC--------CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEec
Q psy7357 105 SVEPVSVRK----DG--------TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ~v~~i~~~~----~g--------~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~ 169 (302)
+++.+|.++ +| .+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+
T Consensus 138 ~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 214 (422)
T 3fvs_A 138 RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDE 214 (422)
T ss_dssp EEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEEecccccccccccccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEc
Confidence 999999876 33 589999999997 78999999999 58998752 59999999999999999999
Q ss_pred CCccc-cccc--CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 170 ANMNA-QVGL--CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 170 a~~~~-~~~~--~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++... ..+. .+ +..++.++++.+.+|+|+.| |.++|++++++++++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~ 269 (422)
T 3fvs_A 215 VYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT----GWKVGWVLGPDHIMKHL 269 (422)
T ss_dssp TTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG----GGCCEEEECCHHHHHHH
T ss_pred cchhhccCCCCCCChhhcccccCcEEEEecchhccCCc----cceEEEEEeCHHHHHHH
Confidence 87421 1110 01 11234558888888988754 78999999988776655
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=153.88 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=128.3
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+.+|. +..++. .++|++++..++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 65 ~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~ 136 (370)
T 2z61_A 65 SRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGAK 136 (370)
T ss_dssp TTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 356667777777777766664 334444 4445566545544432 67899999999998888788889999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCccccc-c-cCCC-
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-G-LCRP- 181 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~-~~~p- 181 (302)
++.+| +|+++|+++++ +++++|++++|+ ++|.+. +.+ |.++|+++|+++|+|+++..... + ..+.
T Consensus 137 ~~~v~------~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 205 (370)
T 2z61_A 137 PVFCD------FTVESLEEALS---DKTKAIIINSPSNPLGEVI-DRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAI 205 (370)
T ss_dssp EEEEC------SSHHHHHHHCC---SSEEEEEEESSCTTTCCCC-CHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGG
T ss_pred EEEeC------CCHHHHHHhcc---cCceEEEEcCCCCCcCccc-CHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHH
Confidence 99888 79999999997 689999999994 899998 688 99999999999999999753211 1 1111
Q ss_pred ---CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 ---GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ---~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+..+.|+++.++||+|+.| |.++|++++++++++.+.
T Consensus 206 ~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~ 245 (370)
T 2z61_A 206 EFDENLEKTILINGFSKLYAMT----GWRIGYVISNDEIIEAIL 245 (370)
T ss_dssp GTCTTCSSEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHH
T ss_pred HccCCCCcEEEEecChhccCCc----cceEEEEEECHHHHHHHH
Confidence 1346789999999998644 678999999987766553
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=148.73 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
..++++.+++++|.+..++..++|+ +++ ..+++ .- |+|+++.+.|..+...++..|.+++.+|.+++
T Consensus 63 ~~~l~~~la~~~~~~~~~i~~~~g~t~al---~~~~~--------~~-d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 130 (361)
T 3ftb_A 63 YRRLNKSIENYLKLKDIGIVLGNGASEII---ELSIS--------LF-EKILIIVPSYAEYEINAKKHGVSVVFSYLDEN 130 (361)
T ss_dssp CHHHHHHHHHHHTCCSCEEEEESSHHHHH---HHHHT--------TC-SEEEEEESCCTHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHhCCCcceEEEcCCHHHHH---HHHHH--------Hc-CcEEEecCChHHHHHHHHHcCCeEEEeecCcc
Confidence 3678899999999876555555554 444 23332 12 89999999988877788889999999999888
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccccc-----ccCCCCccCC
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQV-----GLCRPGDYGS 186 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~-----~~~~p~~~ga 186 (302)
+..|+++++++++ + +++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++..... .....+..+.
T Consensus 131 ~~~~~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T 3ftb_A 131 MCIDYEDIISKID---D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSC 206 (361)
T ss_dssp SCCCHHHHHHHTT---T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSS
T ss_pred cCCCHHHHHHhcc---C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCC
Confidence 8899999999998 5 889999999 58998742 588889999999999999998742111 1111222334
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEE-EeCCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIG-VKSHLAPFLP 222 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~-~~~~l~~~lp 222 (302)
++++.+.+|+++.| |.++|+++ .++++.+.+.
T Consensus 207 ~i~~~s~sK~~~~~----G~r~g~~~~~~~~~~~~~~ 239 (361)
T 3ftb_A 207 LFIIRAMTKFFAMP----GIRFGYGITNNKEIAAKIK 239 (361)
T ss_dssp EEEEEESSSTTSCG----GGCCEEEEESCHHHHHHHH
T ss_pred EEEEeeChhhcCCC----CcceeEEEeCCHHHHHHHH
Confidence 57777888988644 78899998 5666665553
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=160.32 Aligned_cols=178 Identities=11% Similarity=0.002 Sum_probs=131.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCC--CCEEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHH--RNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~--~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
.+|..++.+++.+++++.+|. +..++. .++|++++..++.++. ++ +|+|+++++.|..+...++..|
T Consensus 58 ~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~--------~~~~gd~vl~~~p~~~~~~~~~~~~g 129 (376)
T 3ezs_A 58 SAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL--------FDYQNPTIAYPNPFYQIYEGAAKFIK 129 (376)
T ss_dssp TTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT--------TTCSSCEEEEEESCCTHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc--------CCCCCCEEEEecCCcHhHHHHHHHcC
Confidence 467778888888888888897 444444 4444565544444433 56 8999999999988877888999
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-cccc-
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVGL- 178 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~~- 178 (302)
.+++.+|.++++.+++ +++++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++|+|+++... ..+.
T Consensus 130 ~~~~~~~~~~~~~~~~-~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 205 (376)
T 3ezs_A 130 AKSLLMPLTKENDFTP-SLNEKEL---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPP 205 (376)
T ss_dssp CEEEEEECCGGGTSCC-CCCHHHH---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCC
T ss_pred CEEEEcccCCCCCcch-hHHhhhc---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCC
Confidence 9999999987655666 7888887 57888999999 58998741 4888888899999999999987421 1110
Q ss_pred CCCC---------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPG---------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~---------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.... ..+.++++.+.+|+|+.| |.++|++++++++++.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~ 254 (376)
T 3ezs_A 206 PSLLEACMLAGNEAFKNVLVIHSLSKRSSAP----GLRSGFIAGDSRLLEKYK 254 (376)
T ss_dssp CCHHHHHHHTTCTTCTTEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHH
T ss_pred CCHHHccccccccccCcEEEEecchhccCCc----cceeEEEeeCHHHHHHHH
Confidence 0100 356678899889988644 789999999887766553
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=165.53 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV- 111 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~- 111 (302)
..+.++++.+++ +|.+. .+...+| ++++.+++.++. +++|+|+++++.|.++...+...|++++.++.
T Consensus 57 ~~~~~~~~~la~-~g~~~-~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDYD-GYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQEGHFIETH 126 (446)
T ss_dssp SHHHHHHHHHCS-CTTEE-EEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred hHHHHHHHHHHh-cCCCc-eEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence 357899999999 99874 3444445 466655555542 67899999999998887777788999999998
Q ss_pred -CCC----CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc--cc-cCCCCc
Q psy7357 112 -RKD----GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ--VG-LCRPGD 183 (302)
Q Consensus 112 -~~~----g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~-~~~p~~ 183 (302)
+++ +.+|+++| ++ +++++|++++||++|.+. |+++|+++||++|+++++|+++.... .. ..+...
T Consensus 127 ~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~~n~~G~~~-~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~ 199 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NN---DGHKLVVLTYPNYYGETF-NVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLN 199 (446)
T ss_dssp ECTTTSSEEEEEC-------------CCEEEEESSCTTSCCC-CHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGG
T ss_pred eccccCcCCCCCHHHH---cC---CCceEEEEECCCCCeEec-CHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHH
Confidence 554 56788877 44 678999999999999998 79999999999999999999975311 11 112234
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
+++|+++.|+||+++. +.++|++.+++++++
T Consensus 200 ~g~Di~~~S~~K~l~~-----~~g~g~l~~~~~~i~ 230 (446)
T 2x3l_A 200 YQADYVVQSFHKTLPA-----LTMGSVLYIHKNAPY 230 (446)
T ss_dssp GTCSEEEECHHHHSSS-----CTTCEEEEEETTCTT
T ss_pred cCCCEEEECCcccccc-----ccccEEEEEcCCcCC
Confidence 5789999999998863 347899999988765
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=154.33 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=126.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH-----HHhCCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS-----AQMAGM 104 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~-----~~~~g~ 104 (302)
........+++++++++.|.+. .+..++|+.|+.+ ++++. +++|+|+++++.|+..... ....|+
T Consensus 63 r~~~p~~~~l~~~la~l~g~~~-~~~~~sG~~Ai~~-~~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 132 (400)
T 3nmy_A 63 RTHNPTRFAYERCVAALEGGTR-AFAFASGMAATST-VMELL--------DAGSHVVAMDDLYGGTFRLFERVRRRTAGL 132 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSE-EEEESSHHHHHHH-HHTTS--------CTTCEEEEESSCCHHHHHHHHHTHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCCCC-EEEecCHHHHHHH-HHHHc--------CCCCEEEEeCCCchHHHHHHHHhhHhhcCe
Confidence 3344678899999999999885 4567788776643 33222 6789999999988744332 334699
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++.... ...|..
T Consensus 133 ~~~~v~~~-----d~~~l~~~i~---~~~~~v~~e~~~np~G~~~-~l~~i~~la~~~g~~livDe~~~~~~--~~~~~~ 201 (400)
T 3nmy_A 133 DFSFVDLT-----DPAAFKAAIR---ADTKMVWIETPTNPMLKLV-DIAAIAVIARKHGLLTVVDNTFASPM--LQRPLS 201 (400)
T ss_dssp EEEEECTT-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHHH--HCCGGG
T ss_pred EEEEECCC-----CHHHHHHHhc---cCCCEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCcccc--cCChhh
Confidence 99999874 8999999998 78999999998 5899998 79999999999999999999874322 235667
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcce-eEEE-eCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMG-PIGV-KSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G-~l~~-~~~l~~~l 221 (302)
+++|+++.+++|+|+.| |.+-.| ++++ ++++.+++
T Consensus 202 ~g~div~~S~sK~l~g~---g~~~gG~~vv~~~~~~~~~l 238 (400)
T 3nmy_A 202 LGADLVVHSATKYLNGH---SDMVGGIAVVGDNAELAEQM 238 (400)
T ss_dssp GTCSEEEEETTTTTTCS---SSCCCEEEEECSCHHHHHHH
T ss_pred cCCcEEEecCccccCCC---CCcceeEEEEeCCHHHHHHH
Confidence 89999999999999743 112345 4444 34555544
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-17 Score=152.08 Aligned_cols=170 Identities=19% Similarity=0.222 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-H----HHhCCCEEEE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-S----AQMAGMSVEP 108 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~----~~~~g~~v~~ 108 (302)
++.+++++++++++|.+...+.+++|++++..++.++. +++|+|+++++.|+.+.. . ....+.+++.
T Consensus 69 ~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~ 140 (405)
T 2vi8_A 69 IVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVA 140 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccceeEEEe
Confidence 44445778999999999777777888776655555442 678999999999987743 1 1122358888
Q ss_pred eecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCc-cC
Q psy7357 109 VSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGD-YG 185 (302)
Q Consensus 109 i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~-~g 185 (302)
++++ +++.+|+++|+++++++ ++++|++ +|+.+|... |+++|.++|+++|+++|+|+++..+.... ..+.. .+
T Consensus 141 ~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~-~~~~~~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~ 216 (405)
T 2vi8_A 141 YGVDPETHVIDYDDVREKARLH--RPKLIVA-AAAAYPRII-DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY 216 (405)
T ss_dssp ECBCTTTCSBCHHHHHHHHHHH--CCSEEEE-CCSSCCSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT
T ss_pred cccccccCCcCHHHHHHHHHhc--CCeEEEE-eCCCCCccC-CHHHHHHHHHHcCCEEEEEccccccccccCcCCCcccc
Confidence 8876 46789999999999831 5677776 555457666 79999999999999999999986432211 11111 15
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++.++||+|+.| +| |++++++++.+.+
T Consensus 217 ~di~~~s~sK~~~g~-----~g-G~~~~~~~~~~~l 246 (405)
T 2vi8_A 217 AHFVTTTTHKTLRGP-----RG-GMILCQEQFAKQI 246 (405)
T ss_dssp CSEEEEESSSTTCCC-----SC-EEEEECHHHHHHH
T ss_pred CCEEEEeccccCCCC-----CC-eEEEEcHHHHHHH
Confidence 799999999998732 34 9999987766544
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=159.82 Aligned_cols=171 Identities=15% Similarity=0.086 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
..++++.+++++|.+..++..++|+ +++..++.++. +++|+|+++++.|+.+...++..|.+++.+|.+++
T Consensus 76 ~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~ 147 (397)
T 2zyj_A 76 YAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL--------DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE 147 (397)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred CHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC
Confidence 3567778888888765555555565 45544444432 57899999999988777778889999999998766
Q ss_pred CCCCHHHHHHHHhccCCCeEEE-EEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-ccc--CCCCccCC-
Q psy7357 115 GTIDFSDLETKVKKNKETLSCL-MITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ-VGL--CRPGDYGS- 186 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V-~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~-~~~--~~p~~~ga- 186 (302)
+ +|+++|++++++ .++++| ++++| |++|.+.+ ++++|+++|+++|+++|+|+++.... .+- .+...++.
T Consensus 148 ~-~d~~~l~~~l~~--~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 224 (397)
T 2zyj_A 148 G-PDLDALEEVLKR--ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELARE 224 (397)
T ss_dssp E-ECHHHHHHHHHH--CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHH
T ss_pred C-CCHHHHHHHHhh--cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcc
Confidence 5 899999999983 266777 46788 58998752 46699999999999999999874321 111 11122222
Q ss_pred -----cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 187 -----DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 187 -----Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+++.+.||+|+ | |.++|++++++++++.+.
T Consensus 225 ~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~ 260 (397)
T 2zyj_A 225 AGYPGVIYLGSFSKVLS-P----GLRVAFAVAHPEALQKLV 260 (397)
T ss_dssp HTCCCEEEEEESTTTTC-G----GGCCEEEECCHHHHHHHH
T ss_pred cCCCeEEEEeccccccc-c----cceeEEEecCHHHHHHHH
Confidence 388888999887 5 788999999987766553
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-18 Score=156.64 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=132.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCC-----CEEEEcCCCCcccHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHR-----NVCLIPVSAHGTNPAS 98 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~-----d~Vlv~~~~hg~~~~~ 98 (302)
.+|..++.+++.+.+.+.+|.+ .. ++..++|+ +++..++.++. +++ |+|+++.+.|+.+...
T Consensus 65 ~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~--------~~g~~~~~d~vl~~~p~~~~~~~~ 136 (396)
T 3jtx_A 65 TAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL--------NPVSDGIKPAIVSPNPFYQIYEGA 136 (396)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC--------CC---CCCCEEEEEESCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh--------CCCCccCCCEEEEcCCCcHhHHHH
Confidence 4677888899999998888853 44 55555554 55544444432 454 7999999998877778
Q ss_pred HHhCCCEEEEeecCCCC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 99 AQMAGMSVEPVSVRKDG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
++..|.+++.+|.+++| .+|+++|+++++ +++++|++++| |++|.+. +++++|+++|+++|+++|+|+++...
T Consensus 137 ~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 213 (396)
T 3jtx_A 137 TLLGGGEIHFANCPAPSFNPDWRSISEEVW---KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEI 213 (396)
T ss_dssp HHHTTCEEEEEECCTTTCCCCGGGSCHHHH---HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTC
T ss_pred HHHcCCEEEEeecCCCCCccCHHHHHHhhc---cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 88999999999996655 689999999998 68999999999 5899874 14667999999999999999987421
Q ss_pred -ccccCCCC----------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 -QVGLCRPG----------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 -~~~~~~p~----------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+..... +.+.++++.+.+|+++.| |.++|++++++++++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~ 268 (396)
T 3jtx_A 214 YFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP----GLRSGFVAGDAELLKNFL 268 (396)
T ss_dssp CSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG----GGCCEEEEECHHHHHHHH
T ss_pred ccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc----ccceEEEEeCHHHHHHHH
Confidence 11100111 256678888888987644 789999999887776654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=154.91 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhCCCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++++|.+..++..+ +|++++..++.++. ++||+|+++++.|..+...++..|.+++.+|.++++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~ 139 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA--------AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDF 139 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTS
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh--------CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCC
Confidence 578899999999876555444 44565544444432 678999999999888777888899999999997665
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC----CccCCcEEE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP----GDYGSDVSH 190 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p----~~~gaDiv~ 190 (302)
.+ +++++.+ ++++|++++| |++|.+. |++++.++|+++|+++|+|+++.. +.+. .+ ...+.++++
T Consensus 140 ~~--~~l~~~~-----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~-~~~~-~~~~~~~~~~~~i~~ 209 (360)
T 3hdo_A 140 RI--AGFPERY-----EGKVFFLTTPNAPLGPSF-PLEYIDELARRCAGMLVLDETYAE-FAES-NALELVRRHENVVVT 209 (360)
T ss_dssp SB--TTCCSSB-----CSSEEEEESSCTTTCCCC-CHHHHHHHHHHBSSEEEEECTTGG-GSSC-CCTHHHHHCSSEEEE
T ss_pred CH--HHHHhhc-----CCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCCEEEEECChHh-hCCc-chhHHhccCCCEEEE
Confidence 54 4443322 3458889999 5899999 799999999999999999998742 1111 11 123455888
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+++|+|+.| |.++|++++++++.+.+.
T Consensus 210 ~s~sK~~g~~----G~r~G~~~~~~~~~~~~~ 237 (360)
T 3hdo_A 210 RTLSKSYSLA----GMRIGLAIARPEVIAALD 237 (360)
T ss_dssp EESTTTTSCT----TSCCEEEECCHHHHHHHH
T ss_pred ecchHhhcCC----ccceeeEeeCHHHHHHHH
Confidence 8889988644 789999999887766553
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=159.59 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=131.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--e-eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--K-ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
..|..++.+++.+.+.+.+|.+ . .++..++|+ +++..++.++. +++|+|+++.+.|+.+...++..|.
T Consensus 60 ~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~ 131 (410)
T 3e2y_A 60 GFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGA 131 (410)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCC
Confidence 3466677777878887777754 2 345545554 55544444432 6789999999999888888889999
Q ss_pred EEEEeecCC-----------CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec---cccHHHHHHHHHHhCCEEEEec
Q psy7357 105 SVEPVSVRK-----------DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF---EENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ~v~~i~~~~-----------~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~---~~di~~I~~ia~~~g~llivD~ 169 (302)
+++.+|.++ ++.+|+++++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|+
T Consensus 132 ~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~-~l~~l~~~~~~~~~~li~De 207 (410)
T 3e2y_A 132 VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQ-ELQVIADLCVKHDTLCISDE 207 (410)
T ss_dssp EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEEeccccccccccccccCCcCCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHH-HHHHHHHHHHHcCcEEEEEh
Confidence 999999862 34689999999997 78999999999 489988 5 79999999999999999999
Q ss_pred CCcc-ccccc--CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 170 ANMN-AQVGL--CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 170 a~~~-~~~~~--~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.. ...+. .+ +...+.++++.+.+|+|+.| |.++|++++++++++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~ 262 (410)
T 3e2y_A 208 VYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT----GWKLGWSIGPAHLIKHL 262 (410)
T ss_dssp TTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG----GGCCEEEECCHHHHHHH
T ss_pred hhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC----CceEEEEEECHHHHHHH
Confidence 8742 11110 01 11233458888888988744 78999999988776655
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=155.33 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++++|.+.. +..++|++|+..++.++. .+++|+|+++++.|+++...+...|++++.+|.++
T Consensus 32 ~~~~~l~~~la~~~~~~~v-~~~~ggt~al~~~~~~l~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 103 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKSENA-LALNSATAALHLALRVAG-------VKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDE 103 (394)
T ss_dssp HHHHHHHHHHHHHHCCSEE-EEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeCC
Confidence 5678999999999998653 455666676655555441 15789999999999988888888999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCc-cCCcEEEe
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGD-YGSDVSHL 191 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~-~gaDiv~~ 191 (302)
++.+|+++|+++++++++++++|++++ ++|... |+++|.++|+++|+++|+|+++..+.... ...+. .++|+.++
T Consensus 104 ~~~~d~~~l~~~i~~~~~~~~~v~~~~--~~G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~ 180 (394)
T 1o69_A 104 TYNIDVDLLKLAIKECEKKPKALILTH--LYGNAA-KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSY 180 (394)
T ss_dssp TSSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred CCCcCHHHHHHHHhcccCCceEEEEEC--CCCChh-hHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEE
Confidence 788999999999984322688999987 679888 89999999999999999999985432211 11112 34678888
Q ss_pred CCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
+.||.++ |+++|+++++ +++++.+
T Consensus 181 s~~K~l~------~~~~G~~~~~~~~l~~~l 205 (394)
T 1o69_A 181 NGNKIIT------TSGGGMLIGKNKEKIEKA 205 (394)
T ss_dssp CTTSSSC------CSSCEEEEESCHHHHHHH
T ss_pred eCCccCC------CCCceEEEECCHHHHHHH
Confidence 7788664 5689999996 5655443
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=155.52 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=123.5
Q ss_pred ccHHHHHHHHHHHHHHHh------C--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH
Q psy7357 30 RGYEQLIGELETDLCEIT------G--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~------g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~ 100 (302)
+|..++.+++.+.+.+.+ | .+..++..++|+ +++..++.++. +++|+|+++++.|+.+...++
T Consensus 75 ~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~ 146 (416)
T 1bw0_A 75 VGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC--------DAGDYALVPQPGFPHYETVCK 146 (416)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhC--------CCCCEEEEcCCCcHhHHHHHH
Confidence 455555555555554221 2 444445545554 55544444432 578999999999988877888
Q ss_pred hCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 101 MAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 101 ~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
..|.+++.+|.+++ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++....
T Consensus 147 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 223 (416)
T 1bw0_A 147 AYGIGMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMV 223 (416)
T ss_dssp HTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred HcCcEEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 89999999998653 4689999999997 67899999999 58998862 39999999999999999999975311
Q ss_pred -cc------cCCCCcc---CCcEEEeCCCcccCCCCCCCCCcceeEEEeCC--CCCCC
Q psy7357 176 -VG------LCRPGDY---GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH--LAPFL 221 (302)
Q Consensus 176 -~~------~~~p~~~---gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~--l~~~l 221 (302)
.+ ..+...+ +.++++.+.+|+|+.| |.++|+++++++ +.+.+
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Glr~G~~~~~~~~~~~~~~ 277 (416)
T 1bw0_A 224 FKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGNGPSF 277 (416)
T ss_dssp CCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCSCHHH
T ss_pred cCCCCCCCCccCHHHccCCCcEEEEecchhhCCCC----CceEEEEEeeCchhhHHHH
Confidence 11 1111111 2246777888988654 788999999864 55543
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=153.41 Aligned_cols=161 Identities=11% Similarity=0.140 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR- 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~- 112 (302)
+...++++.+++++|.+. .+.+++|++|+..++.++. .+++|+|+++++.|+++...++..|++++.++.+
T Consensus 36 ~~~~~l~~~la~~~~~~~-~i~~~sgt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~ 107 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVNY-CIGCGNGLDALHLILKGYD-------IGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDI 107 (373)
T ss_dssp HHHHHHHHHHHHHHTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEET
T ss_pred chHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccc
Confidence 567889999999999984 4567788877655555541 1678999999999988877788889999999997
Q ss_pred CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC--CcEEE
Q psy7357 113 KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG--SDVSH 190 (302)
Q Consensus 113 ~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g--aDiv~ 190 (302)
+++.+|+++|+++++ +++++|++.| ++|... |+++|.++|+++|+++|+|+++..+.. . ....++ .|+++
T Consensus 108 ~~~~~d~~~l~~~l~---~~~~~v~~~n--~~G~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~-~-~~~~~~~~~d~~~ 179 (373)
T 3frk_A 108 RTYNIDPSLIESAIT---EKTKAIIAVH--LYGQPA-DMDEIKRIAKKYNLKLIEDAAQAHGSL-Y-KGMKVGSLGDAAG 179 (373)
T ss_dssp TTTEECGGGTGGGCC---TTEEEEEEEC--CTTCCC-CHHHHHHHHHHHTCEEEEECTTCTTCE-E-TTEETTSSSSEEE
T ss_pred cccCcCHHHHHHhcC---CCCeEEEEEC--CCcCcc-cHHHHHHHHHHcCCEEEEECCcccCCE-E-CCEeccccccEEE
Confidence 467899999999998 7899888655 679888 799999999999999999999854332 1 222233 69999
Q ss_pred eC--CCcccCCCCCCCCCcceeEEEeC
Q psy7357 191 LN--LHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 191 ~~--~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
.+ .||+++.+ +.+|++++++
T Consensus 180 ~S~~~~K~l~~~-----g~gg~~~~~~ 201 (373)
T 3frk_A 180 FSFYPAKNLGSL-----GDGGAVVTND 201 (373)
T ss_dssp EECCTTSSSCCS-----SSCEEEEESC
T ss_pred EeCcCCCccCcc-----ceeEEEEeCC
Confidence 98 55887521 2468888864
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=157.49 Aligned_cols=178 Identities=13% Similarity=0.135 Sum_probs=130.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+.+|.+ ..++..++| ++|+..++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 77 ~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~ 148 (406)
T 1xi9_A 77 SEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGGK 148 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCE
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHcCCE
Confidence 3566777788888887777653 344444444 555544444432 67899999999988777778889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc-cc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ-VG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~-~~-~ 178 (302)
++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. +++++|.++|+++|+++|+|+++.... .. .
T Consensus 149 ~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~ 225 (406)
T 1xi9_A 149 PVEYRTIEEEDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH 225 (406)
T ss_dssp EEEEEEEGGGTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC
T ss_pred EEEeecCCCcCCcCCHHHHHHhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCC
Confidence 99999875 34689999999998 68999999998 5899874 259999999999999999999874321 11 0
Q ss_pred CCCCc--cCC-cEEEeCCCcccCCCCCCCCCcceeEE--EeC----CCCCCC
Q psy7357 179 CRPGD--YGS-DVSHLNLHKTFCIPHGGGGPGMGPIG--VKS----HLAPFL 221 (302)
Q Consensus 179 ~~p~~--~ga-Div~~~~hK~l~~p~~~gGp~~G~l~--~~~----~l~~~l 221 (302)
.+... .+. |+++.+.||+|+.| |.++|+++ +++ ++++.+
T Consensus 226 ~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~l~~~l 273 (406)
T 1xi9_A 226 ISPGSLTKDVPVIVMNGLSKVYFAT----GWRLGYMYFVDPENKLSEVREAI 273 (406)
T ss_dssp CCHHHHCSSSCEEEEEESTTTTCCG----GGCCEEEEEECTTCTTHHHHHHH
T ss_pred CCHHHcCCCceEEEEeccccccCCC----ccEEEEEEEecCchhHHHHHHHH
Confidence 11111 245 78888999988743 67899999 777 666554
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=165.62 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
..+.+.++.+++++|.+...+ ..+|+ .++.+++.++. ++||+|+++++.|.+....+...|.++++++.+
T Consensus 205 g~v~~~ee~la~l~G~d~~i~-~~~Gtt~a~~~~i~al~--------~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~ 275 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADRSWS-VVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCC
T ss_pred cHHHHHHHHHHHHhCCCceEE-ECCcHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCC
Confidence 457899999999999987544 45564 55656655543 689999999999988777677889999999876
Q ss_pred CC-----CCC-----CHHHHHHHHhccCCCe--------EEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 113 KD-----GTI-----DFSDLETKVKKNKETL--------SCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 113 ~~-----g~i-----D~~~l~~~i~~~~~~t--------~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.+ |.+ |+++|+++++++ +++ ++|++++||++|.+. |+++|+++||++|+++++|+||...
T Consensus 276 ~~~~g~~g~i~~~~~d~e~le~~i~~~-~~~k~~~~~~~klvil~~pn~~G~v~-dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 276 RNRYGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp BCTTSCBCCCCGGGGSHHHHHHHHHHC-TTTGGGTTCCCSCEEEESSCTTSEEE-CHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCccccccccCcCCCCHHHHHHHHHhC-ccccccccCCCeEEEEECCCCCceec-CHHHHHHHHHHcCCEEEEECcCchh
Confidence 43 346 999999999753 233 489999999999998 8999999999999999999997432
Q ss_pred c--ccc---CCCCccC--CcE------EEeCCCcccCCCCCCCCC-cceeEEEeCC
Q psy7357 175 Q--VGL---CRPGDYG--SDV------SHLNLHKTFCIPHGGGGP-GMGPIGVKSH 216 (302)
Q Consensus 175 ~--~~~---~~p~~~g--aDi------v~~~~hK~l~~p~~~gGp-~~G~l~~~~~ 216 (302)
. ... ..+. .+ +|+ ++.|+||+|+ || ++|++.++++
T Consensus 354 ~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~------g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 354 ARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLN------ALSQASYIHVREG 402 (755)
T ss_dssp GGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSS------CCTTCEEEEEECC
T ss_pred cccCcccCCcchh-cCCcCCccCCCeEEEECcccccc------CcCCeeeeeecCc
Confidence 1 111 1222 55 676 9999999876 55 4788888866
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=157.11 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=129.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Ce-eeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DK-ISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~-~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+++.+.+.+.+|. +. .++ ..++|++++..++.++. +++|+|+++++.|+.+...++..|.
T Consensus 74 ~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~ 145 (412)
T 2x5d_A 74 SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGA 145 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC
Confidence 356666666766666666685 32 234 44455566545544432 5789999999998877777788899
Q ss_pred EEEEeecCCC-C-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccccc-c-
Q psy7357 105 SVEPVSVRKD-G-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQV-G- 177 (302)
Q Consensus 105 ~v~~i~~~~~-g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~-~- 177 (302)
+++.+|.+++ + .+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++..... +
T Consensus 146 ~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~ 222 (412)
T 2x5d_A 146 QVRSVPLVPGIDFFNELERAIRESI---PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW 222 (412)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHTEE---SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred EEEEeecCCccCCCCCHHHHHHhcc---cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 9999998764 3 378999999997 67889999999 47998742 589999999999999999998743221 1
Q ss_pred -cCCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -LCRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -~~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.. ..+.|+++.+.||+|+.| |.++|++++++++++.+.
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~ 268 (412)
T 2x5d_A 223 KAPSIMQVPGAKDIAVEFFTLSKSYNMA----GWRIGFMVGNPELVSALA 268 (412)
T ss_dssp CCCCGGGSTTGGGTEEEEEECC-CCSCT----TSCCEEEEECHHHHHHHH
T ss_pred CCCChhhccCccCcEEEEecCccccCCc----ccceEEEEcCHHHHHHHH
Confidence 00111 146789999999998744 788999999987766553
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-18 Score=154.75 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH--HHhC--CCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS--AQMA--GMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~--~~~~--g~~v~~ 108 (302)
.+...++++++++++|.+...+.+++|++|+..++.+++ +++|+|+++++.|+..... +... |.+++.
T Consensus 42 ~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~ 113 (356)
T 1v72_A 42 DELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT--------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMT 113 (356)
T ss_dssp SHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC--------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEE
T ss_pred chHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc--------CCCCEEEEcCccchhhhhchHHHHHhCCcEEEE
Confidence 467889999999999943324666777776655554432 5789999999887654333 4555 999999
Q ss_pred eecCCCCCCCHHHHHH-HHhcc----CCCeEEEEEecCCCcee---ccccHHHHHHHHHHhCCEEEEecCCccc-c--cc
Q psy7357 109 VSVRKDGTIDFSDLET-KVKKN----KETLSCLMITYPSTFGV---FEENITDVCELIHEHGGQVYLDGANMNA-Q--VG 177 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~-~i~~~----~~~t~~V~i~~Pn~~G~---~~~di~~I~~ia~~~g~llivD~a~~~~-~--~~ 177 (302)
+|.+ ++.+|+++|++ ++++. .+++++|++++|+++|. .+ ++++|+++|+++|+++|+|+++... . .+
T Consensus 114 v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~ 191 (356)
T 1v72_A 114 VDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-EIEAIGDVCKSSSLGLHMDGSRFANALVSLG 191 (356)
T ss_dssp CCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHH-HHHHHHHHHHHTTCEEEEEETTHHHHHHHHT
T ss_pred ecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHH-HHHHHHHHHHHcCCeEEEEchhhHhHhccCC
Confidence 9975 57899999999 88731 12789999999977898 56 7999999999999999999987421 1 11
Q ss_pred cCCCCc----cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 178 LCRPGD----YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 178 ~~~p~~----~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
. .+.. .++|+++.+.||+ + +| |.|++++++++++++
T Consensus 192 ~-~~~~~~~~~~~d~~~~s~sK~-g------~~~G~g~~~~~~~~~~~~ 232 (356)
T 1v72_A 192 C-SPAEMTWKAGVDALSFGATKN-G------VLAAEAIVLFNTSLATEM 232 (356)
T ss_dssp C-CTTTTTGGGTCCEEEECCGGG-T------CSSCEEEEESSGGGHHHH
T ss_pred C-CHHHhhhhhcCCEEEEecccC-C------CcCccEEEEECHHHHhhH
Confidence 1 2332 3689999999997 3 24 457888888876654
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=157.34 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=128.8
Q ss_pred ccHHHHHHHHHHHHHHHhC---CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITG---YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g---~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+|..++.+++.+.+++.+| .+..++..++|+ +++..++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 85 ~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (425)
T 1vp4_A 85 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL--------DDESYCVLDDPAYLGAINAFRQYLAN 156 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCE
Confidence 5666667777777766668 444555556665 44444444432 57899999999988777778889999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhcc-----CCCeEEEE-EecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKN-----KETLSCLM-ITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ- 175 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~-----~~~t~~V~-i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~- 175 (302)
++.+|.++++ +|+++|++++++. .+++++|+ +++| |++|.+.+ ++++|.++|+++|+++|+|+++....
T Consensus 157 ~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 235 (425)
T 1vp4_A 157 FVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRY 235 (425)
T ss_dssp EEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBC
T ss_pred EEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccC
Confidence 9999987765 8999999999731 12788884 6788 58998742 47899999999999999999874321
Q ss_pred ccc--CCC---CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VGL--CRP---GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~~--~~p---~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+- .+. +..+.++++.+++|+|+ | |.++|++++++++++.+.
T Consensus 236 ~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~ 282 (425)
T 1vp4_A 236 EGETVDPIFKIGGPERVVLLNTFSKVLA-P----GLRIGMVAGSKEFIRKIV 282 (425)
T ss_dssp SSCCCCCHHHHHCTTTEEEEEESTTTTC-G----GGCEEEEECCHHHHHHHH
T ss_pred CCCCCcCHHHhCCCCCEEEEeccccccc-c----ccceEEEeeCHHHHHHHH
Confidence 111 111 11245688888899887 5 788999999987766553
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=155.24 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+. .+..++|+.|+..++.+++ .+++|+|+++++.|+.+...++..|.+++.+|.++
T Consensus 63 ~~~~~l~~~la~~~~~~~-~v~~~~Gt~a~~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (399)
T 2oga_A 63 PELEGFEAEFAAYCETDH-AVGVNSGMDALQLALRGLG-------IGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE 134 (399)
T ss_dssp HHHHHHHHHHHHHTTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS
T ss_pred hhHHHHHHHHHHHHCCCe-EEEecCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCC
Confidence 456788999999999884 4667788776655554441 15789999999999887778888999999999976
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC--CcEEE
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG--SDVSH 190 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g--aDiv~ 190 (302)
++.+|+++|+++++ +++++|+++ |++|.+. |+++|.++|+++|+++|+|+++..+.. . ....++ .|+++
T Consensus 135 ~~~~~d~~~l~~~i~---~~~~~v~~~--n~tG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~-~-~~~~~~~~~di~~ 206 (399)
T 2oga_A 135 DHPTLDPLLVEKAIT---PRTRALLPV--HLYGHPA-DMDALRELADRHGLHIVEDAAQAHGAR-Y-RGRRIGAGSSVAA 206 (399)
T ss_dssp SSSSBCHHHHHHHCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHHTCEECEECTTCTTCE-E-TTEETTCTTCEEE
T ss_pred CCCCcCHHHHHHhcC---CCCeEEEEe--CCcCCcc-CHHHHHHHHHHcCCEEEEECcccccCc-c-CCeecccccCEEE
Confidence 57899999999998 688888865 4689988 799999999999999999999853321 1 111122 59999
Q ss_pred eCCC--cccCCCCCCCCCcceeEEEe-CCCCCC
Q psy7357 191 LNLH--KTFCIPHGGGGPGMGPIGVK-SHLAPF 220 (302)
Q Consensus 191 ~~~h--K~l~~p~~~gGp~~G~l~~~-~~l~~~ 220 (302)
.++| |+|+.| | ++|+++++ +++.++
T Consensus 207 ~S~~~sK~~~~~----G-~~g~~~~~~~~~~~~ 234 (399)
T 2oga_A 207 FSFYPGKNLGCF----G-DGGAVVTGDPELAER 234 (399)
T ss_dssp EECCTTSSSCCS----S-CCEEEEESCHHHHHH
T ss_pred EeCCCCccCCcC----C-ceEEEEeCCHHHHHH
Confidence 9985 887632 4 68888886 565443
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=154.25 Aligned_cols=179 Identities=14% Similarity=0.184 Sum_probs=125.6
Q ss_pred ccHHHHHHHHHHHHHHHhC----CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH-HhCC
Q psy7357 30 RGYEQLIGELETDLCEITG----YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA-QMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~-~~~g 103 (302)
+|..++.+++.+.+.+.+| .+..++..++|+ +++.+++.++. ++||+|+++++.|+.+...+ ...|
T Consensus 83 ~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~~g 154 (428)
T 1iay_A 83 HGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC--------CCCCeEEEccCCCcchHHHHHHhcC
Confidence 4555666666666665555 444455555665 55544444432 57899999999998776533 4689
Q ss_pred CEEEEeecCC--CCCCCHHHHHHHHhc---cCCCeEEEEEecCC-Cceecccc---HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 MSVEPVSVRK--DGTIDFSDLETKVKK---NKETLSCLMITYPS-TFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 ~~v~~i~~~~--~g~iD~~~l~~~i~~---~~~~t~~V~i~~Pn-~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.+++.+|.++ +..+|+++|++++++ +.+++++|++++|| ++|.+. + +++|.++|+++|+++|+|+++...
T Consensus 155 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~ 233 (428)
T 1iay_A 155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEecccccc
Confidence 9999999864 336899999999974 22478999999995 799986 5 999999999999999999998431
Q ss_pred -ccc--cCCCCc---------cCCc--EEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 175 -QVG--LCRPGD---------YGSD--VSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 175 -~~~--~~~p~~---------~gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
..+ ..+... ++.| +++.++||+|+.| |.++|++++ ++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~----Glr~G~~~~~~~~~~~~~ 291 (428)
T 1iay_A 234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCA 291 (428)
T ss_dssp CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHH
T ss_pred ccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCC----CceEEEEEeCCHHHHHHH
Confidence 111 111011 1267 8888889988744 788999999 45555543
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=154.89 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+.. +..++|++|+..++.++. .+++|+|+++++.|+++...++..|++++.+|+++
T Consensus 39 ~~~~~l~~~la~~~~~~~~-~~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 110 (393)
T 1mdo_A 39 PKNQELEAAFCRLTGNQYA-VAVSSATAGMHIALMALG-------IGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR 110 (393)
T ss_dssp HHHHHHHHHHHHHHCCSEE-EEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHhCCCcE-EEecChHHHHHHHHHHcC-------CCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC
Confidence 4567899999999998753 456677776655555541 15789999999999888778888999999999987
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC-CcEEEe
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG-SDVSHL 191 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g-aDiv~~ 191 (302)
+ +.+|+++|+++++ +++++|++++ ++|.+. |+++|.++|+++|+++|+|+++..+..... ..++ .|+++.
T Consensus 111 ~~~~~d~~~l~~~l~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~~~~~d~~~~ 182 (393)
T 1mdo_A 111 DTLMVTPEHIEAAIT---PQTKAIIPVH--YAGAPA-DLDAIYALGERYGIPVIEDAAHATGTSYKG--RHIGARGTAIF 182 (393)
T ss_dssp TTCCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETT--EETTSSSEEEE
T ss_pred CcCCCCHHHHHHhcC---CCceEEEEeC--CCCCcC-CHHHHHHHHHHcCCeEEEECccccCCeECC--eecCCCCeEEE
Confidence 5 6799999999998 6889888876 579888 799999999999999999999854322111 1234 899999
Q ss_pred CCC--cccCCCCCCCCCcceeEEEe-CCCCCC
Q psy7357 192 NLH--KTFCIPHGGGGPGMGPIGVK-SHLAPF 220 (302)
Q Consensus 192 ~~h--K~l~~p~~~gGp~~G~l~~~-~~l~~~ 220 (302)
++| |+++ |+++|+++++ +++.++
T Consensus 183 S~~k~K~l~------~~~~g~~~~~~~~~~~~ 208 (393)
T 1mdo_A 183 SFHAIKNIT------CAEGGIVVTDNPQFADK 208 (393)
T ss_dssp ECCTTSSSC------SSSCEEEEESCHHHHHH
T ss_pred eCCCCCccc------cccceEEEeCCHHHHHH
Confidence 999 6553 4578999986 555443
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-17 Score=148.80 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
...++++.+++++|.+..++..++|++ +. ..+++. -++|+|+++++.|..+...++..|++++.+|.++
T Consensus 52 ~~~~lr~~la~~~~~~~~~i~~t~G~~~~l---~~~~~~-------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 121 (337)
T 3p1t_A 52 AEPRVMRKLAEHFSCPEDNLMLVRGIDECF---DRISAE-------FSSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD 121 (337)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEEESHHHHHH---HHHHHH-------STTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT
T ss_pred chHHHHHHHHHHhCcCHHHEEEeCCHHHHH---HHHHHh-------cCCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC
Confidence 457788899999999876666667764 33 222222 1678999999999888888889999999999988
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccccCCCCccCCcEEEe
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVGLCRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~p~~~gaDiv~~ 191 (302)
++.+|+++++++ +++++|++++| |++|.+. +++++.++|++++.+ ++|.++.. .......+...+.++++.
T Consensus 122 ~~~~d~~~l~~~-----~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~-ivDea~~~~~~~~~~~~~~~~~~i~~~ 194 (337)
T 3p1t_A 122 DLLLDPNDLAQV-----SRDDCVVLANPSNPTGQAL-SAGELDQLRQRAGKL-LIDETYVDYSSFRARGLAYGENELVFR 194 (337)
T ss_dssp TSSBCHHHHTTC-----CTTEEEEEESSCTTTCCCC-CHHHHHHHHHHCSEE-EEECTTGGGSSCSSSCCCCBTTEEEEE
T ss_pred CCCCCHHHHHhh-----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCcE-EEECCChhhccccccccccCCCEEEEe
Confidence 889999998775 45789999999 5899998 799999999999974 56998742 111111233345678999
Q ss_pred CCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.+|+|+.| |+|+|++++++++++.+.
T Consensus 195 S~sK~~g~~----G~r~G~~~~~~~~~~~l~ 221 (337)
T 3p1t_A 195 SFSKSYGLA----GLRLGALFGPSELIAAMK 221 (337)
T ss_dssp ESSSTTCCT----TTCCEEEECCHHHHHHHH
T ss_pred eCchhccCc----chheEEEEeCHHHHHHHH
Confidence 889988644 889999999887766553
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=152.65 Aligned_cols=177 Identities=19% Similarity=0.139 Sum_probs=125.7
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++.+++.+.+.+.+|. +..++..++| ++|+.+++.++. +++|+|+++++.|..+...++..|.+
T Consensus 74 ~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~ 145 (407)
T 2zc0_A 74 ANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI--------DPGDVVITENPSYINTLLAFEQLGAK 145 (407)
T ss_dssp TTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTTCE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc--------CCCCEEEEeCCChHHHHHHHHHcCCE
Confidence 356666666666666666684 4445555555 465545544442 57899999999887777777889999
Q ss_pred EEEeecCCCCCCCHHHHHHHHh----ccCCCeEEEE-EecC-CCceeccccHH---HHHHHHHHhCCEEEEecCCccccc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVK----KNKETLSCLM-ITYP-STFGVFEENIT---DVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~----~~~~~t~~V~-i~~P-n~~G~~~~di~---~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
++.+|.++++ +|+++|+++++ +. +++++|+ +++| |++|.+. +.+ +|+++|+++|+++|+|+++.....
T Consensus 146 ~~~v~~~~~~-~d~~~l~~~l~~~~~~~-~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 222 (407)
T 2zc0_A 146 IEGVPVDNDG-MRVDLLEEKIKELKAKG-QKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRY 222 (407)
T ss_dssp EEEEEEETTE-ECHHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBS
T ss_pred EEEcccCCCC-CCHHHHHHHHHhhhccc-CCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 9999987766 89999999997 32 4688874 6677 5899886 454 999999999999999998743211
Q ss_pred -cc--CCCCc---cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 177 -GL--CRPGD---YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 177 -~~--~~p~~---~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+- .+... .+.++++.+.+|+|+ | |.++|++++++++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~~ 268 (407)
T 2zc0_A 223 EGGDIVPLKALDNEGRVIVAGTLSKVLG-T----GFRIGWIIAEGEILKKV 268 (407)
T ss_dssp SCSSCCCGGGGCSSCCEEEEEESTTTTC-T----TSCCEEEECCHHHHHHH
T ss_pred CCCCCCChhhcCCCCCEEEEcccccccC-C----CcceEEEecCHHHHHHH
Confidence 11 11111 234577788889887 4 67899999988776655
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=155.98 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=129.6
Q ss_pred cccHHHHHHHHHHHHHHHhCC-CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 29 ARGYEQLIGELETDLCEITGY-DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~-~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
.+|..++.+++.+.+++.+|. +..++..++|+ ++...++.++. ++||+|+++++.|..+...++..|.++
T Consensus 117 ~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~--------~~Gd~Vlv~~p~y~~~~~~~~~~g~~~ 188 (448)
T 3aow_A 117 TKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL--------NPGDIVVVEAPTYLAALQAFNFYEPQY 188 (448)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEE
T ss_pred CCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc--------CCCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 356667777777777666698 44445545554 55544444432 678999999999887777788899999
Q ss_pred EEeecCCCCCCCHHHHHHHHh----ccCCCeEEEE-EecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-cc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVK----KNKETLSCLM-ITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ-VG 177 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~----~~~~~t~~V~-i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~-~~ 177 (302)
+.+|.+++| +|+++|+++++ +. +++++|+ +.+| |++|.+.+ ++++|.++|+++|+++|+|+++.... .+
T Consensus 189 ~~v~~~~~g-~d~~~L~~~l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g 266 (448)
T 3aow_A 189 IQIPLDDEG-MKVEILEEKLKELKSQG-KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSG 266 (448)
T ss_dssp EEEEEETTE-ECHHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSS
T ss_pred EEeccCCCC-CCHHHHHHHHhhhhccC-CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC
Confidence 999997766 89999999997 32 4788874 5777 58998741 47899999999999999999874321 11
Q ss_pred --cCCC---CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 --LCRP---GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 --~~~p---~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+. ...+.++++.+.+|+|+ | |.++|++++++++++.+.
T Consensus 267 ~~~~~~~~~~~~~~vi~~~S~SK~~~-~----GlriG~v~~~~~l~~~l~ 311 (448)
T 3aow_A 267 NPEKKIKALDNEGRVIYLGTFSKILA-P----GFRIGWMVGDPGIIRKME 311 (448)
T ss_dssp CCCCCTGGGCTTSCEEEEEESTTTTC-G----GGCCEEEEECHHHHHHHH
T ss_pred CCCcCHHhcCCCCCEEEEccchhhcc-c----cccEEEEEeCHHHHHHHH
Confidence 1111 12245688888889887 5 788999999988776653
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=148.47 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
..+...++++.+++++|.+ ..+..++|++++++++.++... .++|+|+++++.|+++...++..|.+++.+|.
T Consensus 89 ~~~~~~~l~~~la~~~~~~-~~i~~~sG~~a~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~ 161 (401)
T 2bwn_A 89 TTAYHRRLEAEIAGLHQKE-AALVFSSAYNANDATLSTLRVL------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH 161 (401)
T ss_dssp CBHHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHHHHHHH------STTCEEEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred ChHHHHHHHHHHHHHhCCC-cEEEECCcHHHHHHHHHHHhcC------CCCCEEEECchhhHHHHHHHHHcCCeEEEEcC
Confidence 3456788999999999986 4556688887665554443211 47899999999998887777889999999997
Q ss_pred CCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC------CCCc
Q psy7357 112 RKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC------RPGD 183 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~------~p~~ 183 (302)
+ |++++++++++.. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+..+.. ..+.
T Consensus 162 ~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~ 235 (401)
T 2bwn_A 162 N-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFG-PIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL 235 (401)
T ss_dssp T-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTC
T ss_pred C-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcC-CHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCc
Confidence 4 8999999997554 47899999998 5899998 799999999999999999999863321100 0010
Q ss_pred -cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 -YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 -~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...|+++.+.+|+|+. || |++++++++.+.+
T Consensus 236 ~~~~~i~~~s~sK~~~~------~G-G~~~~~~~~~~~l 267 (401)
T 2bwn_A 236 MHRIDIFNGTLAKAYGV------FG-GYIAASARMVDAV 267 (401)
T ss_dssp GGGCSEEEEESSSTTCS------CC-EEEEECHHHHHHH
T ss_pred cccCcEEEeechhhccC------CC-CEEecCHHHHHHH
Confidence 1358999888998874 33 8888887665543
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-17 Score=152.59 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+.. +...+|++++..++.++ .++|+|+++++.|+++...+...|++++.+++++
T Consensus 52 ~~~~~l~~~la~~~~~~~v-~~~~ggt~al~~~l~~l---------~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~ 121 (424)
T 2po3_A 52 PLVREFEERVAGLAGVRHA-VATCNATAGLQLLAHAA---------GLTGEVIMPSMTFAATPHALRWIGLTPVFADIDP 121 (424)
T ss_dssp HHHHHHHHHHHHHHTSSEE-EEESCHHHHHHHHHHHH---------TCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHc---------CCCCEEEECCCccHHHHHHHHHcCCEEEEEecCC
Confidence 4567899999999998753 45566667664554443 2569999999999888888888999999999986
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-cCCCCccCCcEEEe
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-LCRPGDYGSDVSHL 191 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~~~p~~~gaDiv~~ 191 (302)
++.+|+++|+++++ +++++|++++ ++|... ++++|.++|+++|+++|+|+++..+... ....+.+ .|+++.
T Consensus 122 ~~~~~d~~~l~~~i~---~~~~~v~~~~--~tG~~~-~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~ 194 (424)
T 2po3_A 122 DTGNLDPDQVAAAVT---PRTSAVVGVH--LWGRPC-AADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVF 194 (424)
T ss_dssp TTSSBCHHHHGGGCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEE
T ss_pred CcCCcCHHHHHHhhC---cCCcEEEEEC--CCCCcC-CHHHHHHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEE
Confidence 67899999999997 6899999876 579888 8999999999999999999998643321 1112222 589999
Q ss_pred CCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++||+.. ++|+++|+++++ +++++++
T Consensus 195 S~sk~K~----l~~~~~G~~v~~~~~l~~~l 221 (424)
T 2po3_A 195 SFHATKA----VNAFEGGAVVTDDADLAARI 221 (424)
T ss_dssp ECCTTSS----SCCSSCEEEEESCHHHHHHH
T ss_pred eCCCCCC----ccCCCCeEEEeCCHHHHHHH
Confidence 8774333 335789999998 5665543
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=151.66 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=130.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.|..+...++++++++++|.+.. +.+++|++++++++.++. +++|.|+++++.|+++...+...|.+++.+
T Consensus 100 ~g~~~~~~~l~~~la~~~g~~~~-i~~~sGt~a~~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~ 170 (409)
T 3kki_A 100 LQNDYDKPMIEKRLAKFTGFDEC-LLSQSGWNANVGLLQTIC--------QPNTNVYIDFFAHMSLWEGARYANAQAHPF 170 (409)
T ss_dssp GCSTTTSCHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCCeE-EEecchHHHHHHHHHHhc--------CCCCEEEECCCcCHHHHHHHHHcCCeEEEe
Confidence 45455667899999999999874 556888876655555443 689999999999988877788889999887
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CC------C
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CR------P 181 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~------p 181 (302)
+. .|+++|+++++++ ++++|++++| |++|.+. ++++|+++|+++|+++|+|+++.....+. .. .
T Consensus 171 ~~-----~d~~~le~~l~~~--~~~~vi~~~~~nptG~~~-~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~ 242 (409)
T 3kki_A 171 MH-----NNCDHLRMLIQRH--GPGIIVVDSIYSTLGTIA-PLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELG 242 (409)
T ss_dssp CT-----TCHHHHHHHHHHH--CSCEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHT
T ss_pred cC-----CCHHHHHHHHHhc--CCeEEEECCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcC
Confidence 75 6899999999842 4688999998 5899998 69999999999999999999884322110 00 0
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
....+|+++.+.+|+|+. + +|++++++++++.+.
T Consensus 243 ~~~~~di~~~s~sK~~~~------~-gg~v~~~~~~~~~~~ 276 (409)
T 3kki_A 243 LTREVHFMTASLAKTFAY------R-AGAIWCNNEVNRCVP 276 (409)
T ss_dssp CGGGCSEEEEESSSTTCS------S-CEEEEESSSGGGTHH
T ss_pred CCCCCCEEEeecchhhCC------C-ceEEEECHHHHHHHH
Confidence 123579999999998863 2 499999998887654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=151.81 Aligned_cols=170 Identities=24% Similarity=0.308 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc-cH--HHHHhCCCEEEEeec
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT-NP--ASAQMAGMSVEPVSV 111 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~-~~--~~~~~~g~~v~~i~~ 111 (302)
...++++.+++++|.+.. +.+.+|++++..++.++. ++||+|+++++.|+. +. ..+...|++++.+ .
T Consensus 39 ~~~~l~~~la~~~g~~~~-~~~~~gt~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~ 108 (347)
T 1jg8_A 39 TINELERLAAETFGKEAA-LFVPSGTMGNQVSIMAHT--------QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-P 108 (347)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-C
T ss_pred HHHHHHHHHHHHhCCceE-EEecCcHHHHHHHHHHhc--------CCCCEEEEcCcchhhhccccchhhccCeEEEEe-c
Confidence 456888999999998754 556778776644444432 689999999998854 22 2456789999988 5
Q ss_pred CCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCc-eecc--ccHHHHHHHHHHhCCEEEEecCCccc-c--cccCCC
Q psy7357 112 RKDGTIDFSDLETKVKKN---KETLSCLMITYP-STF-GVFE--ENITDVCELIHEHGGQVYLDGANMNA-Q--VGLCRP 181 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~--~~~~~p 181 (302)
++++.+|+++|+++++++ .++|++|++++| |++ |.+. +++++|.++|+++|+++++|+++... . .+. ++
T Consensus 109 ~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~-~~ 187 (347)
T 1jg8_A 109 GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV-PV 187 (347)
T ss_dssp EETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC-CH
T ss_pred CCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC-Ch
Confidence 556778999999999731 137999999999 478 9874 15789999999999999999987431 1 111 22
Q ss_pred Cc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 182 GD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 182 ~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. .++|.++.++||+|+. |.+|+++.++++++++
T Consensus 188 ~~~~~~~d~~~~s~sK~l~~------~~G~~~~~~~~~~~~~ 223 (347)
T 1jg8_A 188 KEYAGYADSVMFCLSKGLCA------PVGSVVVGDRDFIERA 223 (347)
T ss_dssp HHHHHTCSEEEEESSSTTCC------SSCEEEEECHHHHHHH
T ss_pred HHhcccccEEEEecccccCC------CceEEEEcCHHHHHHH
Confidence 21 3578888888998863 3223566676665543
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-17 Score=153.17 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=122.5
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee--eEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI--SFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~--~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
.+|..++.+++.+.+....+. +.. ++. +.+|++|+..++..+. .+ +++|+|+++++.|..+...++..|
T Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~-~~-----~~gd~Vlv~~p~~~~~~~~~~~~g 164 (420)
T 4f4e_A 91 IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLR-TL-----NPKAKVAISDPSWENHRALFDMAG 164 (420)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHH-HH-----CTTCCEEEEESCCHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHH-Hh-----CCCCEEEEeCCCcHhHHHHHHHcC
Confidence 467777777766666544331 122 344 4444455544421111 11 688999999999988888888999
Q ss_pred CEEEEeec--CCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc
Q psy7357 104 MSVEPVSV--RKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG 177 (302)
Q Consensus 104 ~~v~~i~~--~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~ 177 (302)
.+++.+|. ++++.+|+++|++.+++++++++++++++| |++|.+. +++++|+++|+++|+++|+|.++.- ...+
T Consensus 165 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~ 244 (420)
T 4f4e_A 165 FEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI 244 (420)
T ss_dssp CCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT
T ss_pred CeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc
Confidence 99999998 346789999999999866678899999998 5899872 1688999999999999999998621 1110
Q ss_pred ------c-CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 178 ------L-CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 178 ------~-~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
+ .-++..+.++++.+.+|+|+.| |+|+|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~~~~ 283 (420)
T 4f4e_A 245 EADAAAVRLFAAANLNVFVSSSFSKSFSLY----GERVGALSI 283 (420)
T ss_dssp TGGGHHHHHHHHTTCCEEEEEECTTTTTCG----GGCEEEEEE
T ss_pred chhhHHHHHHHhcCCCEEEEEeCCccCcCc----CCCcEEEEE
Confidence 0 0011234468888888888754 889999875
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=150.07 Aligned_cols=180 Identities=14% Similarity=0.178 Sum_probs=124.4
Q ss_pred cccHHHHHHHHHHHHHHHhC----CCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-hC
Q psy7357 29 ARGYEQLIGELETDLCEITG----YDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-MA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-~~ 102 (302)
.+|..++.+++.+.+.+..| ++...+..+ +|++|+.+++.++. +++|+|+++++.|+.+...+. ..
T Consensus 85 ~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~ 156 (435)
T 3piu_A 85 YHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDRDLKWRT 156 (435)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHTTTTT
T ss_pred CCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc--------CCCCeEEECCCccccHHHHHHHhc
Confidence 45666666666666655544 444444444 44566655555543 678999999999987776666 78
Q ss_pred CCEEEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 103 GMSVEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 103 g~~v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
|.+++.+|.+++ ..+|+++|+++++++ .+++++|++++| |++|.+. +++++|.++|+++|+++|+|+++...
T Consensus 157 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 236 (435)
T 3piu_A 157 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT 236 (435)
T ss_dssp CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred CCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 999999998763 358999999999742 237899999999 5899873 15799999999999999999997421
Q ss_pred -cccc--CCCC----c---------cCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCC
Q psy7357 175 -QVGL--CRPG----D---------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPF 220 (302)
Q Consensus 175 -~~~~--~~p~----~---------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~ 220 (302)
..+- .... + ....+++.++||+|+.| |.++|+++++ +++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~----G~r~G~~~~~~~~~~~~ 295 (435)
T 3piu_A 237 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP----GFRVGAIYSNDDMVVAA 295 (435)
T ss_dssp CCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCG----GGCEEEEEESCHHHHHH
T ss_pred ccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCC----ceeEEEEEeCCHHHHHH
Confidence 1111 0100 1 11127788888988644 7899999995 444443
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-17 Score=147.85 Aligned_cols=169 Identities=16% Similarity=0.172 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCC--EEEEcCCCCcccH---HHHHhCCCEEEE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRN--VCLIPVSAHGTNP---ASAQMAGMSVEP 108 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d--~Vlv~~~~hg~~~---~~~~~~g~~v~~ 108 (302)
+...++++++++++|.+.. +..++|++|+..++.++. .++| .|+++++.|.... ......|.+++.
T Consensus 48 ~~~~~l~~~la~~~~~~~~-i~~~~g~~a~~~a~~~~~--------~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~ 118 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQSA-VFFPSGTMAQQIALRIWA--------DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLL 118 (359)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHH--------HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHH--------hcCCCcEEEEeccceeeehhcchHHHhcCceEEe
Confidence 4578899999999999876 455788877655555544 2334 3666656543221 123456999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCc-eecc--ccHHHHHHHHHHhCCEEEEecCCccccc-cc-CCCC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STF-GVFE--ENITDVCELIHEHGGQVYLDGANMNAQV-GL-CRPG 182 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~-~~-~~p~ 182 (302)
+|. +++.+|+++|+++ . +++++|++++| |++ |.+. +++++|+++|+++|+++|+|+++..... .. ..+.
T Consensus 119 v~~-~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 193 (359)
T 3pj0_A 119 LGT-ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAE 193 (359)
T ss_dssp CSC-TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHH
T ss_pred cCC-cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHH
Confidence 987 5678999999988 4 78999999999 565 6764 1466669999999999999988643211 00 1111
Q ss_pred --ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 --DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 --~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.|+++.+.||+|+. |..|+++.++++++++.
T Consensus 194 ~~~~~~d~~~~s~sK~~~~------~~gg~~~~~~~l~~~~~ 229 (359)
T 3pj0_A 194 EICALFDSVYVSFYKGIGG------IAGAILAGNDDFVQEAK 229 (359)
T ss_dssp HHHTTCSEEEEESSSTTCC------SSCEEEEECHHHHHHHH
T ss_pred HhhccCCEEEEeccccCCC------cceEEEECCHHHHHHHH
Confidence 13579999889998874 33388888887776653
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=147.24 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhC--CCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 32 YEQLIGELETDLCEITG--YDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g--~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..++.+++.+.+++.+| .+..++..++| ++++.+++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~ 139 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQERKIIE 139 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTTTCEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEe
Confidence 34555566666666668 44444544444 555544444432 57899999999988887788888999999
Q ss_pred eecC-CCC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-ccc--cC
Q psy7357 109 VSVR-KDG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVG--LC 179 (302)
Q Consensus 109 i~~~-~~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~--~~ 179 (302)
+|.+ ++| .+|+++|++++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++... ..+ ..
T Consensus 140 ~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 217 (399)
T 1c7n_A 140 CELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHT 217 (399)
T ss_dssp CCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCC
T ss_pred cccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcc
Confidence 9985 333 5899999999973 57899999999 58998851 3999999999999999999987421 111 11
Q ss_pred CCCc-----cCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 180 RPGD-----YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 180 ~p~~-----~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
+... .+.++++.+.+|+|+.| |.++|+++++ +++++.+
T Consensus 218 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~l 261 (399)
T 1c7n_A 218 VFQSIDEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNPDIRERF 261 (399)
T ss_dssp CGGGSCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHH
T ss_pred cHHHcCccccCcEEEEEeChhhcccc----chheEEEEECCHHHHHHH
Confidence 1111 24468888899998754 7889999997 4566655
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=154.06 Aligned_cols=172 Identities=14% Similarity=0.149 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHhCC--CeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 33 EQLIGELETDLCEITGY--DKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~--~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.++.+++.+.+.+.+|. +..++..+ +|++++..++.++. +++|+|+++.+.|+.+...++..|.+++.+
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 132 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT--------PAQSKVIVPTPAYPPFFHLLSATQREGIFI 132 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCCEEEEESCCTHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEEc
Confidence 45666666677666664 34444444 44555544444432 678999999999988877888889999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-ccc-c--CCCC
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVG-L--CRPG 182 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~-~--~~p~ 182 (302)
|.+++ +|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++... ..+ . .+..
T Consensus 133 ~~~~~--~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 207 (377)
T 3fdb_A 133 DATGG--INLHDVEKGFQ---AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGV 207 (377)
T ss_dssp ECTTS--CCHHHHHHHHH---TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGS
T ss_pred cCCCC--CCHHHHHHHhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHH
Confidence 99776 99999999998 67889999999 58998741 5888888899999999999987431 111 0 0111
Q ss_pred ---ccCCcEEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 183 ---DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 183 ---~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
..+.++++.+.+|+|+.| |.++|++++ ++++.+.+
T Consensus 208 ~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~ 246 (377)
T 3fdb_A 208 SDTAASVCITITAPSKAWNIA----GLKCAQIIFSNPSDAEHW 246 (377)
T ss_dssp CHHHHHHEEEEECSTTTTTCG----GGCCEEEECCSHHHHHHH
T ss_pred HccCCCcEEEEEeChHhccCc----chhheEEEeCCHHHHHHH
Confidence 123348888889988644 789998877 55655544
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=152.87 Aligned_cols=182 Identities=13% Similarity=0.136 Sum_probs=128.8
Q ss_pred cccHHHHHHHHHHHHHHHh-CCCeee---EeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHh-C
Q psy7357 29 ARGYEQLIGELETDLCEIT-GYDKIS---FQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQM-A 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~-g~~~~~---~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~-~ 102 (302)
.+|..++.+++.+.+.+.. +.+..+ +..++| ++|+..++.++. +++|+|+++++.|+.+...++. .
T Consensus 87 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~ 158 (430)
T 2x5f_A 87 PQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV--------NQDDTILLPEHNWGNYKLVFNTRN 158 (430)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh--------CCCCEEEEcCCcCccHHHHHHHhc
Confidence 3566666666555554432 555444 544445 455544444432 6789999999998888777888 9
Q ss_pred CCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHH-----hCCEEEEecCCcc
Q psy7357 103 GMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHE-----HGGQVYLDGANMN 173 (302)
Q Consensus 103 g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~-----~g~llivD~a~~~ 173 (302)
|.+++.+|.++ ++.+|+++|++++++++.++++|++++| |++|.+.+ ++++|.++|++ +|+++|+|+++..
T Consensus 159 g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~ 238 (430)
T 2x5f_A 159 GANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG 238 (430)
T ss_dssp CCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT
T ss_pred CCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc
Confidence 99999999875 4579999999999844348899999999 58998751 38999999999 9999999998742
Q ss_pred -ccccc-CCC-C----c-cCC---cEEEeCCCcccCCCCCCCCCcceeEEE---eCCCCCCCC
Q psy7357 174 -AQVGL-CRP-G----D-YGS---DVSHLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFLP 222 (302)
Q Consensus 174 -~~~~~-~~p-~----~-~ga---Div~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~lp 222 (302)
...+. ..+ . . .+. ++++.+.||+|+.| |.++|++++ ++++++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~ 297 (430)
T 2x5f_A 239 LFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAW----GFRVGFMTFGTSDQTTKEVLE 297 (430)
T ss_dssp CBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEBCCCHHHHHHHH
T ss_pred ccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCC----CCCeEEEEEecCCHHHHHHHH
Confidence 11111 011 1 1 233 57788889988744 788999999 777766553
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=151.46 Aligned_cols=164 Identities=15% Similarity=0.187 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhC-----CCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 36 IGELETDLCEITG-----YDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 36 ~~e~~~~l~~l~g-----~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
..++++.++++++ .+..++ +..+|++|+..++.++. +++|+|+++++.|..+...++..|++++.+
T Consensus 98 ~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~ 169 (427)
T 3dyd_A 98 FLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA--------NPGQNILVPRPGFSLYKTLAESMGIEVKLY 169 (427)
T ss_dssp CHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEE
Confidence 3566777777777 444444 44455566545544443 678999999999988888888999999999
Q ss_pred ecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcc-ccccc--CC
Q psy7357 110 SVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMN-AQVGL--CR 180 (302)
Q Consensus 110 ~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~-~~~~~--~~ 180 (302)
|.++ ++.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|+++.. ...+- ..
T Consensus 170 ~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~ 245 (427)
T 3dyd_A 170 NLLPEKSWEIDLKQLEYLID---EKTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEP 245 (427)
T ss_dssp EEEGGGTTEECHHHHHSSCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCC
T ss_pred ecccccCCCCCHHHHHHHhc---cCCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCcc
Confidence 9864 45789999999997 67999999999 5899986 5 99999999999999999998742 11111 11
Q ss_pred CCccCCc---EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 181 PGDYGSD---VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 181 p~~~gaD---iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
...++.| +++.+.+|.|+.| |.++|++++++
T Consensus 246 ~~~~~~~~~vi~~~S~sK~~~~~----G~riG~~~~~~ 279 (427)
T 3dyd_A 246 LATLSTDVPILSCGGLAKRWLVP----GWRLGWILIHD 279 (427)
T ss_dssp GGGGCSSCCEEEEEESTTTSSCG----GGCCEEEEEEC
T ss_pred HHHhCCCCcEEEEeeccccCCCc----CcceEEEEecC
Confidence 1222333 5667788887654 78999999985
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-16 Score=150.77 Aligned_cols=182 Identities=15% Similarity=0.206 Sum_probs=130.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++.+++.+.+.+..|.+ ..++..++|+ +++..++.++. .+++|.|+++++.|+.+...++..|.+
T Consensus 133 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 205 (500)
T 3tcm_A 133 SQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI-------RNEKDGILVPIPQYPLYSASIALHGGA 205 (500)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC-------CSTTEEEEEEESCCTHHHHHHHHTTCE
T ss_pred CcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc-------CCCCCEEEEeCCCcHhHHHHHHHcCCE
Confidence 7898899999999998888843 4455555554 44433333321 147899999999998888888899999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccccc-
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQV- 176 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~- 176 (302)
++.++++++ +.+|+++|++++++. .+++++|++++| |++|.+. +++++|.++|+++|+++++|.++.....
T Consensus 206 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~ 285 (500)
T 3tcm_A 206 LVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYV 285 (500)
T ss_dssp EEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCC
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccC
Confidence 999999765 379999999999832 127899999999 5899872 2688888899999999999998742111
Q ss_pred c---cCCC----Ccc-----CCc-EEEeCCCccc-CCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 177 G---LCRP----GDY-----GSD-VSHLNLHKTF-CIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 177 ~---~~~p----~~~-----gaD-iv~~~~hK~l-~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
. ..+. .++ ..+ +++.|++|+| +.| |.++|++.+ ++++++.+
T Consensus 286 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~----G~R~G~~~~~~~~~~~~~~l 343 (500)
T 3tcm_A 286 DNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC----GKRGGYFEITGFSAPVREQI 343 (500)
T ss_dssp TTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG----GGCCEEEEEESCCTTHHHHH
T ss_pred CCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCC----ccceEEEEEeCCCHHHHHHH
Confidence 1 0000 011 122 5566788888 433 789999998 66766554
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=148.78 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEe
Q psy7357 35 LIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPV 109 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i 109 (302)
...++++.+++++|.+ ...+.+++|++|+..++.++ +||+|+++++.|+.+.. .++..|++++.+
T Consensus 59 ~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~----------~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v 128 (374)
T 2aeu_A 59 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL----------KPKKVIHYLPELPGHPSIERSCKIVNAKYFES 128 (374)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH----------CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC----------CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe
Confidence 3456777788889983 33456677776654443321 57899999998776543 566789999888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEE-EEEecCC-Cce-eccccHHHHHHHHHHhCCEEEEecCCccccc-ccCC--CCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSC-LMITYPS-TFG-VFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCR--PGD 183 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~-V~i~~Pn-~~G-~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~--p~~ 183 (302)
.|+++++++ + +++++ |++++|| ++| ... ++++|.++|+++|+++|+|+++..... .... +..
T Consensus 129 -------~d~~~l~~~-~---~~~~~~v~~~~p~nptG~~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 196 (374)
T 2aeu_A 129 -------DKVGEILNK-I---DKDTLVIITGSTMDLKVIELE-NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK 196 (374)
T ss_dssp -------SCHHHHHTT-C---CTTEEEEEECBCTTSCBCCHH-HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH
T ss_pred -------CCHHHHHhc-C---CCccEEEEEccCCCCCCCCcc-cHHHHHHHHHHcCCEEEEECCcccccccccccCCccc
Confidence 389999887 5 78899 9999984 888 777 799999999999999999998743321 1111 334
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.|+++.++||+++ ||++|++++++++++++
T Consensus 197 ~~~di~~~S~sK~l~------g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 197 LGADLVVTSTDKLME------GPRGGLLAGKKELVDKI 228 (374)
T ss_dssp HTCSEEEEETTSSSS------SCSCEEEEEEHHHHHHH
T ss_pred cCCcEEEecCccccc------CcceEEEEECHHHHHHH
Confidence 678999999999864 68999999998877655
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=147.72 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
..++++.+++++|.+..++..++|+ ++...++.++ ++|+|+++.+.|+.+...++..|.+++.+|.+++
T Consensus 61 ~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~----------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~ 130 (364)
T 1lc5_A 61 YFHLHQALARHHQVPASWILAGNGETESIFTVASGL----------KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREA 130 (364)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH----------CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGG
T ss_pred HHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc----------CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcc
Confidence 4678889999999876555555554 5443333222 2489999999988777778889999999998752
Q ss_pred CCCC-HHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-cc---cCCCCccCC
Q psy7357 115 GTID-FSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ-VG---LCRPGDYGS 186 (302)
Q Consensus 115 g~iD-~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~-~~---~~~p~~~ga 186 (302)
..++ ++++.+.++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.... .. +.....++.
T Consensus 131 ~~~~~l~~~~~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 207 (364)
T 1lc5_A 131 DGWQLTDAILEALT---PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH 207 (364)
T ss_dssp GTTCCCTTHHHHCC---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred cccchhHHHHHhcc---CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence 2244 455656554 67888999999 58998861 39999999999999999999974211 11 111234567
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEE-EeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIG-VKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~-~~~~l~~~l 221 (302)
|+++.+.||+|+.| |.++|+++ .++++++.+
T Consensus 208 ~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~l 239 (364)
T 1lc5_A 208 IWVLRSLTKFYAIP----GLRLGYLVNSDDAAMARM 239 (364)
T ss_dssp EEEEEESTTTTTCT----TTCCEEEECCCHHHHHHH
T ss_pred EEEEEECchhhcCC----ccceEEEEECCHHHHHHH
Confidence 89999999988744 78899999 887766544
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=147.94 Aligned_cols=174 Identities=15% Similarity=0.126 Sum_probs=120.2
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee--eEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI--SFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~--~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
.+|..++.+++.+.+.+..+. +.. ++..++| ++++..++..+..+ +++|+|+++++.|..+...++..|
T Consensus 69 ~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g 142 (397)
T 3fsl_A 69 MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAG 142 (397)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcC
Confidence 456666666666665443331 222 3444444 45553432211111 678999999999888877888999
Q ss_pred CEEEEeec--CCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec---cccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 104 MSVEPVSV--RKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF---EENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 104 ~~v~~i~~--~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~---~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
.+++.+|. ++++.+|++++++++++++++++++++++| |++|.+ + ++++|+++|+++|+++|+|.++......
T Consensus 143 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~-~l~~l~~~~~~~~~~li~De~~~~~~~~ 221 (397)
T 3fsl_A 143 FEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTND-QWDAVIEILKARELIPFLDIAYQGFGAG 221 (397)
T ss_dssp CCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHH-HHHHHHHHHHHTTCEEEEEESCTTSSSC
T ss_pred CceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHH-HHHHHHHHHHhCCEEEEEecCchhhccC
Confidence 99999998 346789999999999876678899999998 589987 4 6889999999999999999986311100
Q ss_pred -------cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 178 -------LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 178 -------~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
+.. +...+..+++.+.+|+|+.| |.|+|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~riG~~~~ 261 (397)
T 3fsl_A 222 MEEDAYAIRAIASAGLPALVSNSFSKIFSLY----GERVGGLSV 261 (397)
T ss_dssp TTGGGHHHHHHHHTTCCEEEEEECTTTTTCG----GGCCEEEEE
T ss_pred cccccHHHHHHHhcCCCEEEEecccccccCc----CCCeeEEEE
Confidence 000 11223457777778877644 889999986
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=148.62 Aligned_cols=181 Identities=12% Similarity=0.136 Sum_probs=124.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe-eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK-ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~-~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
.+|..++.+++.+++....+.+. .++. ..+|++|+..++.++. +++|+|+++++.|+.+...++..|.++
T Consensus 79 ~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~ 150 (418)
T 3rq1_A 79 IAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT--------EPGDEVLTADWYWGAYRVICSDTGRTL 150 (418)
T ss_dssp TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS--------CTTCEEEEESSCCTHHHHHHHHTTCEE
T ss_pred CCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc--------CCCCEEEECCCCchhHHHHHHHcCCEE
Confidence 46777777777777766666541 2344 4444455544444432 689999999999988888888999999
Q ss_pred EEeecC-CCCCCCHHHHHHHHhcc-CCCeE-EEEEecC--CCceeccc--cHHHHHHHHH------HhCCEEEEecCCcc
Q psy7357 107 EPVSVR-KDGTIDFSDLETKVKKN-KETLS-CLMITYP--STFGVFEE--NITDVCELIH------EHGGQVYLDGANMN 173 (302)
Q Consensus 107 ~~i~~~-~~g~iD~~~l~~~i~~~-~~~t~-~V~i~~P--n~~G~~~~--di~~I~~ia~------~~g~llivD~a~~~ 173 (302)
+.+|++ +++.+|+++|+++++++ .++++ +|++++| |++|.+.+ .+++|+++|+ ++|+++|+|+++.
T Consensus 151 ~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~- 229 (418)
T 3rq1_A 151 VTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL- 229 (418)
T ss_dssp EEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG-
T ss_pred EEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc-
Confidence 999985 45689999999999731 01444 7888888 58998751 3566666666 8999999999862
Q ss_pred cccc-------c-CCCCccCCc---EEEeCCCcccCCCCCCCCCcceeEEE---eCCCCCCCC
Q psy7357 174 AQVG-------L-CRPGDYGSD---VSHLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFLP 222 (302)
Q Consensus 174 ~~~~-------~-~~p~~~gaD---iv~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~lp 222 (302)
.+.. + ........| +++.+.+|+|+.| |.++|++++ ++++++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~ 288 (418)
T 3rq1_A 230 DYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMY----GQRVGAMIGISDDEEIADEFF 288 (418)
T ss_dssp GGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCC----SSCCEEEEEEESSHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCc----CCcceEEEEEeCCHHHHHHHH
Confidence 1110 0 011112234 6677788888644 899999998 777766654
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=145.09 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 35 LIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 35 ~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
+.+++.+.+.+.+| .+..++..++|+ +++.+++.++. +++|+|+++++.|+.+...++..|.+++.+|.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~ 140 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--------ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVAL 140 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeec
Confidence 55666666666667 444455555554 55544444432 57899999999988777778889999999998
Q ss_pred CCCC---CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc-cc--cCCCC
Q psy7357 112 RKDG---TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ-VG--LCRPG 182 (302)
Q Consensus 112 ~~~g---~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~-~~--~~~p~ 182 (302)
++++ .+|+++|++++++ .++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.... .+ ..+..
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 218 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS 218 (390)
T ss_dssp EECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG
T ss_pred ccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHH
Confidence 6543 4899999999972 37899999999 58998742 48999999999999999999874321 11 11111
Q ss_pred cc--CC-cEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 183 DY--GS-DVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 183 ~~--ga-Div~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
.+ +. |+ +.+.+|+|+.| |.++|+++++ +++.+.+
T Consensus 219 ~~~~~~~d~-~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~ 256 (390)
T 1d2f_A 219 NVARGDWAL-LTSGSKSFNIP----ALTGAYGIIENSSSRDAY 256 (390)
T ss_dssp GTCCSSEEE-EECSHHHHTCG----GGCCEEEEECSHHHHHHH
T ss_pred HcchhhHhh-ccCccHhhccc----ChhheEEEECCHHHHHHH
Confidence 12 12 67 88889998744 7889999996 5665544
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=157.58 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.+.++|+.+++++|.+.+.+.+++++.|+.++++++. ++||+|+++++.|.+....+...|+++++++.+.+
T Consensus 196 ~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~ 267 (715)
T 3n75_A 196 PHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN 267 (715)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCccHHHHHHHHHcCCEEEEEecccc
Confidence 4899999999999999876654433577767666654 78999999999998888888899999999987532
Q ss_pred -----CCC-----CHHHHHHHHhccCCCeE---EEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc--ccc-
Q psy7357 115 -----GTI-----DFSDLETKVKKNKETLS---CLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ--VGL- 178 (302)
Q Consensus 115 -----g~i-----D~~~l~~~i~~~~~~t~---~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~~- 178 (302)
+.+ |+++|+++++++ ++++ +|++++||++|.+. |+++|+++|++++ +++|+||.... +..
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~-~~~k~p~~vivt~pn~~G~v~-dl~~I~ela~~~~--livDEAH~~~~~f~~~~ 343 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKET-PNATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHS-TTCCSCSEEEEESSCTTSEEE-CHHHHHHHCCCSE--EEEECTTCTTGGGSGGG
T ss_pred ccccccCcccccCCHHHHHHHHhhC-cCccCceEEEEECCCCCCccC-CHHHHHHHhCcCc--EEEccccccccccCCcc
Confidence 224 899999999864 3344 89999999999998 8999999998764 67999985332 111
Q ss_pred --CCCCccC--CcEE---EeCCCcccCCCCCCCCC-cceeEEEeCC
Q psy7357 179 --CRPGDYG--SDVS---HLNLHKTFCIPHGGGGP-GMGPIGVKSH 216 (302)
Q Consensus 179 --~~p~~~g--aDiv---~~~~hK~l~~p~~~gGp-~~G~l~~~~~ 216 (302)
..+...+ +|++ +.|+||+|+ || +.|++.++++
T Consensus 344 ~~~~al~~g~~aD~vii~~~S~hKtL~------gltqgs~i~v~~~ 383 (715)
T 3n75_A 344 EGKCGMSGGRVEGKVIYETQSTHKLLA------AFSQASMIHVKGD 383 (715)
T ss_dssp TTSSTTSSSCCTTCEEEEEECHHHHSS------CCTTCEEEEEESC
T ss_pred ccccccccCcCCCEEEEEEeccccccc------CCCCeeEEEeCch
Confidence 1222233 6876 899999986 55 6789999876
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=145.32 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCC--EEEEcCCCCcccH---HHHHhCCCEEEEe
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRN--VCLIPVSAHGTNP---ASAQMAGMSVEPV 109 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d--~Vlv~~~~hg~~~---~~~~~~g~~v~~i 109 (302)
...++++++++++|.+.. +..++|++++..++.++. .++| +|+++++.|.... ......|.+++.+
T Consensus 48 ~~~~l~~~la~~~~~~~~-i~~~~G~~a~~~al~~~~--------~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v 118 (357)
T 3lws_A 48 IIEPFEQKFADVLGMDDA-VFFPSGTMAQQVALRIWS--------DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILV 118 (357)
T ss_dssp THHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHH--------HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEEC
T ss_pred HHHHHHHHHHHHhCCCcE-EEecCcHHHHHHHHHHHh--------hcCCCcEEEecccceeeeeccchhhhccCcEEEEe
Confidence 467888999999999765 445788877655555543 2344 7788777654321 2345679999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cc-eecc--ccHHHHHHHHHHhCCEEEEecCCcc---cccccCCCC
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TF-GVFE--ENITDVCELIHEHGGQVYLDGANMN---AQVGLCRPG 182 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~---~~~~~~~p~ 182 (302)
|. +++.+|+++|+++ +++++|++++|| ++ |.+. +++++|+++|+++|+++|+|+++.. ...+. .+.
T Consensus 119 ~~-~~~~~d~~~l~~~-----~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-~~~ 191 (357)
T 3lws_A 119 GA-ADRLMTLDEIKAL-----PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEK-TAA 191 (357)
T ss_dssp SC-TTSCCCHHHHHTC-----CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC-CHH
T ss_pred cC-CCCCcCHHHHhcC-----cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCC-ChH
Confidence 85 5678999999886 237889999995 66 8764 2699999999999999999998741 11111 111
Q ss_pred --ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 --DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 --~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..++|+++.+.||+|+ ||.+|+++.++++++.+
T Consensus 192 ~~~~~~d~~~~s~sK~~~------~~~gg~~~~~~~~~~~~ 226 (357)
T 3lws_A 192 EIAGLFDSIYISFYKGLG------GIAGAILAGPAAFCQTA 226 (357)
T ss_dssp HHHTTSSEEEEESSSTTC------CSSCEEEEECHHHHHHH
T ss_pred HHHhcCCEEEEeccccCC------CCceEEEEcCHHHHHHH
Confidence 1347999999999886 34449999888776655
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=145.77 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=123.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEe---eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQ---PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~---~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
.+|..++++++.+.+.+..|.+ ..++. +.+|++++..++.++..+. +++|+|+++++.|..+...++..|
T Consensus 70 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~g 144 (401)
T 7aat_A 70 IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-----KFSRDVYLPKPSWGNHTPIFRDAG 144 (401)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-----TTCCEEEEEESCCTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhc-----cCCCEEEEcCCCchhHHHHHHHcC
Confidence 4576666666666555444421 22332 3444455544444443321 578999999999999988889999
Q ss_pred CEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccccc
Q psy7357 104 MSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQVG 177 (302)
Q Consensus 104 ~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~~~ 177 (302)
.+++.+|++. ++.+|++++++.+++.++++++|++++| |++|.+. .++++|+++|+++|+++++|.++. .....
T Consensus 145 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 224 (401)
T 7aat_A 145 LQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD 224 (401)
T ss_dssp CEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC
T ss_pred CeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCC
Confidence 9999999853 6789999999988765578899999999 5899652 269999999999999999999863 11111
Q ss_pred c----CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 178 L----CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 178 ~----~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
. .. .....-.+++.+.+|+|+.| |+|+|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~----G~RiG~l~~ 264 (401)
T 7aat_A 225 INRDAWALRHFIEQGIDVVLSQSYAKNMGLY----GERAGAFTV 264 (401)
T ss_dssp HHHHTHHHHHHHHTTCCCEEEEECTTTSCCG----GGCEEEEEE
T ss_pred ccccHHHHHHHHhcCCcEEEEecCCcccccc----cCceEEEEE
Confidence 0 00 01123457888888888755 889999987
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=149.38 Aligned_cols=172 Identities=11% Similarity=0.083 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHH--HHHHHHHHHHHhhcCCC----------CCEEEEcCCCCcccHHHHHhCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEY--AGLRAIQCYHQAQDAHH----------RNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~--a~l~a~~~~~~~~g~~~----------~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
.++++.++++++++..++..++|++ +.. .++.++. . + .+ ||+|+++++.|..+...++..|
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~---~--~-~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g 154 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI---F--G-NNDSVQPWSKEETVKWICPVPGYDRHFSITERFG 154 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH---H--C-CTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh---c--c-CCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC
Confidence 4566677777788877777777764 331 2223322 1 0 13 8999999999888888888999
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEe-cC-CCceeccc--cHHHHHHHH-HHhCCEEEEecCCcc-cccc
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMIT-YP-STFGVFEE--NITDVCELI-HEHGGQVYLDGANMN-AQVG 177 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~-~P-n~~G~~~~--di~~I~~ia-~~~g~llivD~a~~~-~~~~ 177 (302)
++++.+|++++| +|+++|++++++ +++++|++. +| |++|.+.+ ++++|.++| +++|+++|+|.++.. .+..
T Consensus 155 ~~~~~v~~~~~g-~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~ 231 (427)
T 3ppl_A 155 FEMISVPMNEDG-PDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTD 231 (427)
T ss_dssp CEEEEEEEETTE-ECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSS
T ss_pred CEEEEeCCCCCC-CCHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCC
Confidence 999999998776 999999999952 678888866 55 68998851 345888888 999999999998742 1111
Q ss_pred cC-C----------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 LC-R----------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~~-~----------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
-. . ++..+.++++.+.+|+ ..| |.|+|++++++++++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~----G~r~G~~~~~~~l~~~~~ 282 (427)
T 3ppl_A 232 EFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLA----GAGVSFFLTSAENRKWYT 282 (427)
T ss_dssp CCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHH
T ss_pred CCCCccchhhhhhccCCCCcEEEEechhhc-cCc----CccEEEEEcCHHHHHHHH
Confidence 10 0 1133557888888897 433 789999999987776653
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=151.19 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHhCCCee--eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 32 YEQLIGELETDLCEITGYDKI--SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.-..-+++..++.+++|++.. .+..++++ .++.+++.+++.. ..++++|++++..|.+....+...|+++++
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~-----~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK-----RPKAKYIIWPRIDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH-----CTTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh-----hcCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence 446667888899999999854 24444343 3343444444431 123688999999998888888999999999
Q ss_pred eec---CCCCCCCHHHHHHHHhccCCCeEEEEEecCCCce--eccccHHHHHHHHHHhCCEEEEecCCcccccccC-CC-
Q psy7357 109 VSV---RKDGTIDFSDLETKVKKNKETLSCLMITYPSTFG--VFEENITDVCELIHEHGGQVYLDGANMNAQVGLC-RP- 181 (302)
Q Consensus 109 i~~---~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G--~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-~p- 181 (302)
++. ++.+.+|+++|+++|++++++..++++.+|+++| .+. |+++|+++||++|++++||+|+........ -|
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~d-dl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~ 249 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD-RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ 249 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceec-CHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHH
Confidence 876 4457899999999998765345677777888766 678 899999999999999999998753222110 01
Q ss_pred C--c-cCCcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 182 G--D-YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 182 ~--~-~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
. + .++|+++.|+|||+..|. +.+++.++
T Consensus 250 ~a~~~~~AD~~v~S~HK~l~a~~-----~~~~l~~r 280 (450)
T 3bc8_A 250 QGARVGRIDAFVQSLDKNFMVPV-----GGAIIAGF 280 (450)
T ss_dssp HHHHHSCCCEEEEEHHHHHSCCS-----SCEEEEES
T ss_pred HHhcccCCCEEEECCccCCCchh-----ccEEEEec
Confidence 1 2 279999999999998763 45677765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6e-16 Score=150.18 Aligned_cols=182 Identities=16% Similarity=0.171 Sum_probs=128.7
Q ss_pred cccHHHHHHHHHHHHHHHhC-C--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCC----CEEEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITG-Y--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHR----NVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g-~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~----d~Vlv~~~~hg~~~~~~~ 100 (302)
++|..++++++.+.+.+..| . +..++..++|+ ++...++.++. +++ |.|+++.+.|+.+...++
T Consensus 128 ~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~--------~~gd~~~d~Vlv~~p~y~~~~~~~~ 199 (498)
T 3ihj_A 128 SQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV--------SGGGKSRTGVMIPIPQYPLYSAVIS 199 (498)
T ss_dssp CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC--------CCCGGGSEEEEEEESCCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc--------CCCCCCCCEEEEeCCCchhHHHHHH
Confidence 78988999999999988875 5 34566666665 44433333322 344 599999999998888888
Q ss_pred hCCCEEEEeecCCC--CCCCHHHHHHHHhccCC--CeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 101 MAGMSVEPVSVRKD--GTIDFSDLETKVKKNKE--TLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 101 ~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~--~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~ 173 (302)
..|.+++.++.+++ ..+|+++|++++++.+. ++++|+++|| |++|.+- +++++|.++|+++|+++++|.++..
T Consensus 200 ~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~ 279 (498)
T 3ihj_A 200 ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQD 279 (498)
T ss_dssp HTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred HcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccc
Confidence 99999999999764 47899999999984322 5899999999 5899872 2689999999999999999998742
Q ss_pred ccc-c---cCCCCc----c------CCc-EEEeCCCcccCCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 174 AQV-G---LCRPGD----Y------GSD-VSHLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 174 ~~~-~---~~~p~~----~------gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
... . ..+... . ..+ |++.+.+|+|+ |..|.++|++.+ ++++.+.+
T Consensus 280 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~---G~~G~R~G~~~~~~~~~~l~~~l 342 (498)
T 3ihj_A 280 NVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM---GECGYRGGYMEVINLHPEIKGQL 342 (498)
T ss_dssp CBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT---CCSSSCCEEEEEESCCHHHHHHH
T ss_pred cccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc---cCcccceEEEEEecCCHHHHHHH
Confidence 111 1 000000 0 112 56667788883 123889999984 55555544
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=143.07 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=108.2
Q ss_pred eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC--CCCCCCHHHHHHHHhccCCCe
Q psy7357 56 PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR--KDGTIDFSDLETKVKKNKETL 133 (302)
Q Consensus 56 ~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~--~~g~iD~~~l~~~i~~~~~~t 133 (302)
..+|++|+..++.++..+ .+||+|+++++.|+.+...++..|.+++.+|.+ +++.+|+++|+++++++++++
T Consensus 100 ~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 173 (396)
T 2q7w_A 100 TPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGD 173 (396)
T ss_dssp ESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTC
T ss_pred cccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCC
Confidence 555666665555444322 578999999999988888888899999999985 456789999999998544467
Q ss_pred EEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccc------ccCCCCccC-CcEEEeCCCcccCCCCC
Q psy7357 134 SCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQV------GLCRPGDYG-SDVSHLNLHKTFCIPHG 202 (302)
Q Consensus 134 ~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~------~~~~p~~~g-aDiv~~~~hK~l~~p~~ 202 (302)
+++++++| |++|.+. .++++|+++|+++|+++|+|+++.. ... .+......+ .++++.+.+|+|+.|
T Consensus 174 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-- 251 (396)
T 2q7w_A 174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLY-- 251 (396)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG--
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccc--
Confidence 88888998 5899873 2588999999999999999998642 111 010001112 347778788888643
Q ss_pred CCCCcceeEEE
Q psy7357 203 GGGPGMGPIGV 213 (302)
Q Consensus 203 ~gGp~~G~l~~ 213 (302)
|.++|++++
T Consensus 252 --G~riG~~~~ 260 (396)
T 2q7w_A 252 --NERVGACTL 260 (396)
T ss_dssp --GGCCEEEEE
T ss_pred --ccccceEEE
Confidence 788999997
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=146.55 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=117.4
Q ss_pred cccHHHHHHHHHHHHHHHh-CC--CeeeEe---eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhC
Q psy7357 29 ARGYEQLIGELETDLCEIT-GY--DKISFQ---PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~-g~--~~~~~~---~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~ 102 (302)
.+|..++.+ .+++++ +. +..++. +.+|++|+.+++.+++.+ .+||+|+++++.|+.+...++..
T Consensus 68 ~~g~~~lr~----~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~ 137 (394)
T 2ay1_A 68 LSGEPEFQK----AMGELILGDGLKSETTATLATVGGTGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFM 137 (394)
T ss_dssp SSCCHHHHH----HHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHH
T ss_pred CCCcHHHHH----HHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHc
Confidence 355444444 444443 43 333343 455566665555555422 47889999999888777777888
Q ss_pred CCEEEEeecC--CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-ccc
Q psy7357 103 GMSVEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQV 176 (302)
Q Consensus 103 g~~v~~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~ 176 (302)
|.+++.+|.+ +++.+|++++++++++++++++++++++| |++|.+.+ ++++|.++|+++|+++|+|+++.. ...
T Consensus 138 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 217 (394)
T 2ay1_A 138 GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG 217 (394)
T ss_dssp TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSC
T ss_pred CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccC
Confidence 9999999985 45678999999999854345778888998 58998741 578999999999999999998742 111
Q ss_pred ------ccCCCCccCCc-EEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 177 ------GLCRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 177 ------~~~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
.+......+.| +++.+.+|+|+.| |.++|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~ 257 (394)
T 2ay1_A 218 LEEDAAGTRLIASRIPEVLIAASCSKNFGIY----RERTGCLLA 257 (394)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECTTTTTCG----GGCEEEEEE
T ss_pred cccchHHHHHHhhcCCCEEEEEeccCCCcCc----CCccceEEE
Confidence 01001112334 5677778888643 788999998
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=140.11 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=113.9
Q ss_pred HHHHHHHHHHh----CCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE------
Q psy7357 37 GELETDLCEIT----GYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS------ 105 (302)
Q Consensus 37 ~e~~~~l~~l~----g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~------ 105 (302)
.++++.+++++ +.+..++..++|++ +. ..+.++. +++|+|+++++.|+.+...++..|.+
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al-~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~ 184 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAADEIFISDGSKCDI-ARIQMMF--------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGT 184 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGEEEESCHHHHH-HHHHHHH--------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHEEEccCHHHHH-HHHHHHh--------CCCCEEEEcCCCChhHHHHHHHcCCccccccc
Confidence 34555555555 45555666666654 33 2223332 68899999999998888888888888
Q ss_pred ----EEEeecCCCC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-c
Q psy7357 106 ----VEPVSVRKDG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-Q 175 (302)
Q Consensus 106 ----v~~i~~~~~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~ 175 (302)
++.+|.++++ ..|++++ +++++|++++| |++|.+. +++++|+++|+++|+++|+|+++... .
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~ 256 (449)
T 3qgu_A 185 GFDGIEYMVCNPDNHFFPDLSKA--------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYIS 256 (449)
T ss_dssp SBTTEEEEECCGGGTTCCCGGGC--------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred ccceeEEEecccccCCcCChhHc--------CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhc
Confidence 9999987643 3444321 57889999999 5899873 15899999999999999999987421 1
Q ss_pred ccc--CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 176 VGL--CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 176 ~~~--~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
.+- .. +...+.++++.+++|+|+.| |+++|++++++++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~ 303 (449)
T 3qgu_A 257 NPDCPKTIYEIPGADEVAIETCSFSKYAGFT----GVRLGWTVVPKALKYA 303 (449)
T ss_dssp CTTSCSSGGGSTTGGGTEEEEEECSGGGTCT----TCCCEEEECCTTCBCT
T ss_pred CCCCCCCHhhccCCCCcEEEEecchhhcCCc----cceeEEEecCHHHHhh
Confidence 110 01 11234578898889988744 8999999999888763
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-16 Score=146.51 Aligned_cols=170 Identities=15% Similarity=0.119 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccHHHHHhCCCEEEEeecC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~~~~~~~g~~v~~i~~~ 112 (302)
+...++++.+++++|.+. .+.+++|++|+..++.++. ++|| +++++.| +++...+...|++++.++++
T Consensus 75 ~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~al~~l~--------~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~ 143 (456)
T 2ez2_A 75 ENFYHLERTVQELFGFKH-IVPTHQGRGAENLLSQLAI--------KPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRD 143 (456)
T ss_dssp HHHHHHHHHHHHHHCCSE-EEEESSHHHHHHHHHHHHC--------CTTC--EEEESSCCHHHHHHHHHTTCEEEECBCG
T ss_pred hhHHHHHHHHHHHhCCCc-EEEeCCcHHHHHHHHHHhC--------CCCC--EeccccccchhHHHHHHcCCEEEEeccc
Confidence 346788999999999875 4556778877655555542 5777 6667777 77677778899999999986
Q ss_pred C----------CCCCCHHHHHHHHhccC-CCeEEEEEecC-C-Cceeccc--cHHHHHHHHHHhCCEEEEecCCccc---
Q psy7357 113 K----------DGTIDFSDLETKVKKNK-ETLSCLMITYP-S-TFGVFEE--NITDVCELIHEHGGQVYLDGANMNA--- 174 (302)
Q Consensus 113 ~----------~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n-~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~--- 174 (302)
+ ++.+|+++|+++++++. +++++|++++| | ++|.+.+ ++++|+++|+++|+++|+|+++..+
T Consensus 144 ~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~ 223 (456)
T 2ez2_A 144 EAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAY 223 (456)
T ss_dssp GGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccc
Confidence 3 25789999999998422 23589999988 4 7898751 4999999999999999999997542
Q ss_pred ------ccccCCCC-------ccCCcEEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCC
Q psy7357 175 ------QVGLCRPG-------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPF 220 (302)
Q Consensus 175 ------~~~~~~p~-------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~ 220 (302)
......+- ....|+++.++||+++ .|++|++++ ++++++.
T Consensus 224 ~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~------~~~gG~~~~~~~~~~~~ 277 (456)
T 2ez2_A 224 FIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL------VNIGGFLCMNDDEMFSS 277 (456)
T ss_dssp HHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC------CSSCEEEEESCHHHHHH
T ss_pred cccccccccCCcchhhhhhhhcccCCEEEEeCcccCC------CCceeEEEECCHHHHHH
Confidence 11111110 1236998887788643 136799998 4566544
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=148.64 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=125.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCC--------------EEEEc-CC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRN--------------VCLIP-VS 90 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d--------------~Vlv~-~~ 90 (302)
.+|..++.+++.+.+.+.+|.. ..++..++|+ +|+..++.++. +++| +|+++ ++
T Consensus 82 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~~~~~g~~~~vi~~~~p 153 (444)
T 3if2_A 82 PQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG--------GAFVNEHSQDKESKSVDKSILLPLTP 153 (444)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS--------EEEECC-------CEEEEEEEESSSS
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh--------CCCccccccccccccccceEEEeCCC
Confidence 5677778888888877777653 3455545554 55544443332 3455 67776 77
Q ss_pred CCcccHHH------HHhCCCEEEEeecCC-CC----CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHH
Q psy7357 91 AHGTNPAS------AQMAGMSVEPVSVRK-DG----TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCE 156 (302)
Q Consensus 91 ~hg~~~~~------~~~~g~~v~~i~~~~-~g----~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ 156 (302)
.|..+... ....|.+++.+++++ +| .+|+++|++++.+..+++++|++++| |++|.+.+ ++++|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~ 233 (444)
T 3if2_A 154 EYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAE 233 (444)
T ss_dssp CCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHH
Confidence 77766542 345688999999875 33 68999999984321278999999999 58998861 3899999
Q ss_pred HHHHhCCEEEEecCCccccccc----CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 157 LIHEHGGQVYLDGANMNAQVGL----CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 157 ia~~~g~llivD~a~~~~~~~~----~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|+++|+|+++....... ..+...+.++++.+.||+ .. +|.++|++++++++++.+.
T Consensus 234 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~----~G~r~G~~~~~~~l~~~~~ 298 (444)
T 3if2_A 234 IAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GL----PGMRTGIIVADAKVIEAVS 298 (444)
T ss_dssp HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TC----GGGCCEEEECCHHHHHHHH
T ss_pred HHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cC----CCCceEEEEECHHHHHHHH
Confidence 9999999999999874211111 122334668889988995 43 3788999999887776654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=146.21 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHH--HHHHHHHHHHHhhcCC--C---------CCEEEEcCCCCcccHHHHHhC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEY--AGLRAIQCYHQAQDAH--H---------RNVCLIPVSAHGTNPASAQMA 102 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~--a~l~a~~~~~~~~g~~--~---------~d~Vlv~~~~hg~~~~~~~~~ 102 (302)
.++++.++++++++..++..++|++ +.. .++.++. . + +|+|+++++.|..+...++..
T Consensus 73 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~--------~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~ 144 (423)
T 3ez1_A 73 PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALL--------HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL 144 (423)
T ss_dssp HHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHH--------TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHh--------ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc
Confidence 4667778888898876676676764 442 2333332 3 4 589999999988777788889
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEe-cC-CCceeccc--cHHHHHHHH-HHhCCEEEEecCCcc-ccc
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMIT-YP-STFGVFEE--NITDVCELI-HEHGGQVYLDGANMN-AQV 176 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~-~P-n~~G~~~~--di~~I~~ia-~~~g~llivD~a~~~-~~~ 176 (302)
|.+++.+|.+++| +|+++|++++++ .+++++|++. +| |++|.+.+ ++++|+++| +++|+++|+|+++.. .+.
T Consensus 145 g~~~~~v~~~~~g-~d~~~l~~~l~~-~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~ 222 (423)
T 3ez1_A 145 GFELLTVDMQSDG-PDVDAVERLAGT-DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLV 222 (423)
T ss_dssp TCEEEEEEEETTE-ECHHHHHHHHHS-CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCC
T ss_pred CCEEEeccCCCCC-CCHHHHHHHHhh-CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcC
Confidence 9999999998765 999999999952 1688988765 56 68998751 355888888 999999999998742 111
Q ss_pred c--cCCC----------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 177 G--LCRP----------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 177 ~--~~~p----------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. ...+ +..+.++++.+.+|+ .. +|.|+|++++++++++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~----~G~r~G~~~~~~~~~~~~~ 275 (423)
T 3ez1_A 223 EEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TF----AGAGLGFVASSEDNIRWLS 275 (423)
T ss_dssp SSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SC----SSSSCEEEEECHHHHHHHH
T ss_pred CCCCCCCcchhhhhhccCCCCeEEEEeCchhh-cc----CCcceEEEEeCHHHHHHHH
Confidence 1 1111 123456888888887 33 3789999999987776653
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=136.58 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCccc-HHHHHhC-------CCE
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTN-PASAQMA-------GMS 105 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~-~~~~~~~-------g~~ 105 (302)
...++++.+++++|++...+..++|++|+.+++.+++.+.. ++ +++ |+|+++++.|+.+ ....... |+.
T Consensus 71 ~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~-~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~ 148 (375)
T 2eh6_A 71 WQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR-DK-GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFE 148 (375)
T ss_dssp HHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHH-HT-TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTC
T ss_pred HHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhc-cC-CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCC
Confidence 35688899999999843334456666776565554433321 11 245 8999999875544 3333322 222
Q ss_pred -----EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEecCCc-cc
Q psy7357 106 -----VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLDGANM-NA 174 (302)
Q Consensus 106 -----v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD~a~~-~~ 174 (302)
+..+|. .|+++|+++++ +++++|++++| |++|.+. + +++|.++|+++|+++|+|+++. .+
T Consensus 149 ~~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 219 (375)
T 2eh6_A 149 PLVPGFSYAKL-----NDIDSVYKLLD---EETAGIIIEVIQGEGGVNE-ASEDFLSKLQEICKEKDVLLIIDEVQTGIG 219 (375)
T ss_dssp SCCSSEEEECT-----TCHHHHHTTCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CCCCCceeCCC-----chHHHHHHHhc---CCeEEEEEeCccCCCCCcC-CCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 444443 58999999997 78999999887 5789886 5 9999999999999999999985 22
Q ss_pred cccc-CCCCccC--CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 175 QVGL-CRPGDYG--SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~-~~p~~~g--aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
..+. .....++ +|++++| |+|+ +|+++|++++++++++.+..
T Consensus 220 ~~~~~~~~~~~~~~~d~~s~S--K~~~-----~g~~~G~~~~~~~~~~~~~~ 264 (375)
T 2eh6_A 220 RTGEFYAYQHFNLKPDVIALA--KGLG-----GGVPIGAILAREEVAQSFTP 264 (375)
T ss_dssp TTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSCCEEEEEEHHHHTTCCT
T ss_pred CCCcchhhhhcCCCCCEEEEc--cccc-----CCCCeEEEEEcHHHHhhhcC
Confidence 2110 1112345 8999775 8886 36799999999887777654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=138.80 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhC---CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 36 IGELETDLCEITG---YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 36 ~~e~~~~l~~l~g---~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
..++++.++++++ .+..++..++|+ ++. ..+++. - ||+|+++ +.|+.+...++..|.+++.+|.
T Consensus 58 ~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al---~~~~~~-------~-gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~ 125 (335)
T 1uu1_A 58 DEELIEKILSYLDTDFLSKNNVSVGNGADEII---YVMMLM-------F-DRSVFFP-PTYSCYRIFAKAVGAKFLEVPL 125 (335)
T ss_dssp CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHH---HHHHHH-------S-SEEEECS-SSCHHHHHHHHHHTCEEEECCC
T ss_pred hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHH---HHHHHH-------h-CCcEEEC-CCcHHHHHHHHHcCCeEEEecc
Confidence 5678889999999 766556555665 433 233332 2 6899999 9887777777888999999998
Q ss_pred CCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccc-cCCCCccCCcE
Q psy7357 112 RKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVG-LCRPGDYGSDV 188 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~-~~~p~~~gaDi 188 (302)
++++.+|+++| +++++|++++| |++|.+. +.+++.++++..| ++|+|+++.. .... +...+..+.++
T Consensus 126 ~~~~~~d~~~l--------~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i 195 (335)
T 1uu1_A 126 TKDLRIPEVNV--------GEGDVVFIPNPNNPTGHVF-EREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLA 195 (335)
T ss_dssp CTTSCCCCCCC--------CTTEEEEEESSCTTTCCCC-CHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEE
T ss_pred CCCCCCCHHHc--------CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEE
Confidence 77767888776 35788999999 5899998 7999999999888 9999999842 1111 11123345678
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.+.+|+|+.| |.++|++++++++++++
T Consensus 196 ~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l 224 (335)
T 1uu1_A 196 VIRTFSKAFSLA----AQRVGYVVASEKFIDAY 224 (335)
T ss_dssp EEEESTTTTTCG----GGCCEEEEECHHHHHHH
T ss_pred EEecchhhcCCc----ccCeEEEEeCHHHHHHH
Confidence 889889988644 78899999988776554
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=147.46 Aligned_cols=170 Identities=12% Similarity=0.014 Sum_probs=122.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~~~g 103 (302)
++-+.+.+++.++.+++++|++. ..++. .+|+.+..+++..+. . ..+||+|++....|.+++. .++..|
T Consensus 53 ~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~---~---~~~Gd~v~~~~~g~~~~~~~~~a~~~G 126 (377)
T 3e77_A 53 SSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI---G---LKAGRCADYVVTGAWSAKAAEEAKKFG 126 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHG---G---GSTTCEEEECCCSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhcc---C---CCCCCeEEEEECCHHHHHHHHHHHHhC
Confidence 45578999999999999999964 33443 455565434444332 1 1247888877665544433 456778
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++++.+|+++++.+|+++++..++ ++|++|++++- |.+|+++ |+ +++++|+++++|+++.++...+ +..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~-pi-----i~~~~~~~~~vD~~q~~g~~~i-d~~ 196 (377)
T 3e77_A 127 TINIVHPKLGSYTKIPDPSTWNLN---PDASYVYYCANETVHGVEF-DF-----IPDVKGAVLVCDMSSNFLSKPV-DVS 196 (377)
T ss_dssp EEEECSCCCSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTEEC-SS-----CCCCTTCCEEEECTTTTTSSCC-CGG
T ss_pred CceEEeccCCCcCCCCChHHhccC---CCccEEEEeCccCchheEc-hh-----hhccCCCEEEEEcccccCCCCC-chh
Confidence 888888987777778888776666 78888888873 5689999 67 4778999999999986555443 344
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++ |++++++||+++ | ||+|++++++++.++++
T Consensus 197 ~~--~~~~~s~~K~~g-p-----~G~g~l~~~~~~l~~~~ 228 (377)
T 3e77_A 197 KF--GVIFAGAQKNVG-S-----AGVTVVIVRDDLLGFAL 228 (377)
T ss_dssp GC--SEEEEEGGGTTS-C-----TTCEEEEEETTSCSCCC
T ss_pred hc--CEEEEecccccC-C-----CccEEEEEcHHHHhhcc
Confidence 45 468888999984 5 68999999998887664
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=149.77 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=127.8
Q ss_pred cccHHHHHHHHHHHHHHHhC--CC---eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhC
Q psy7357 29 ARGYEQLIGELETDLCEITG--YD---KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~---~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~ 102 (302)
.+|..++.+++.+.+.+.++ .+ ..++..++|+ +++..++.++.. ..-.+++|+|+++++.|..+...+...
T Consensus 137 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~---~~l~~~gd~Viv~~p~~~~~~~~~~~~ 213 (533)
T 3f6t_A 137 DRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAE---NHLLKKGDKIAINEPIFTPYLRIPELK 213 (533)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHH---TTSSCTTCEEEEESSCCHHHHTSGGGG
T ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhh---hhccCCcCEEEEcCCCcHHHHHHHHHc
Confidence 46778888888888876633 22 2355555555 444333333211 000167899999999987776667788
Q ss_pred CCEEEEeecCC----CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHH-HhCCEEEEecCCccc
Q psy7357 103 GMSVEPVSVRK----DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIH-EHGGQVYLDGANMNA 174 (302)
Q Consensus 103 g~~v~~i~~~~----~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~-~~g~llivD~a~~~~ 174 (302)
|.+++.++++. ++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+ ++|+++|+|.++...
T Consensus 214 g~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~ 290 (533)
T 3f6t_A 214 DYELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAF 290 (533)
T ss_dssp GSEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGG
T ss_pred CCeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcccc
Confidence 99999999853 46789999999997 78999999999 58998741 4668888898 589999999987411
Q ss_pred ccccCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC-----CCCCC
Q psy7357 175 QVGLCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH-----LAPFL 221 (302)
Q Consensus 175 ~~~~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~-----l~~~l 221 (302)
.....+.. ..+.++++.+.+|+|+.| |.++|+++++++ +++.+
T Consensus 291 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~~~~~~~~~li~~l 340 (533)
T 3f6t_A 291 VPNFKSIYSVVPYNTMLVYSYSKLFGCT----GWRLGVIALNEKNVFDDNIAHL 340 (533)
T ss_dssp STTCCCHHHHSGGGEEEEEESHHHHTCG----GGCEEEEEEESSCHHHHHHHTS
T ss_pred ccCccCHhhcCCCCEEEEecCcccCCCc----ccceEEEEECcHHHHHHHHHhc
Confidence 11111111 113458899889988755 789999999987 55554
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-16 Score=141.94 Aligned_cols=163 Identities=11% Similarity=0.075 Sum_probs=115.9
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe--eeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDK--ISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGM 104 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~--~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~ 104 (302)
.+..+.++++++.+++++|++. ..+.. ++|++++.+++.++. ++||+|+++++.|..+. ..++..|
T Consensus 45 ~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~g- 115 (362)
T 2c0r_A 45 AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL--------KEGQTANYVMTGSWASKALKEAKLIG- 115 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcC--------CCCCeEEEEecCcHhHHHHHHHHHhC-
Confidence 4567889999999999999975 33344 445565544444432 57899888765533332 3456678
Q ss_pred EEEEeecCC---CC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceec-cccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 105 SVEPVSVRK---DG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVF-EENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 105 ~v~~i~~~~---~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~-~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
+++.+++++ .+ .+|.++++ ++ ++|++|++++| |++|.. . |+++| +|+++++|+++..+...+
T Consensus 116 ~~~~v~~~~~~~~~~~~~~~~~~--i~---~~t~~v~~~~~~n~tG~~~~-~l~~i------~~~~vivD~a~~~~~~~~ 183 (362)
T 2c0r_A 116 DTHVAASSEASNYMTLPKLQEIQ--LQ---DNAAYLHLTSNETIEGAQFK-AFPDT------GSVPLIGDMSSDILSRPF 183 (362)
T ss_dssp CEEEEEECGGGTTCSCCCGGGCC--CC---TTEEEEEEESEETTTTEECS-SCCCC------TTSCEEEECTTTTTSSCC
T ss_pred CeEEEecccccccccCCCHHHcc--cC---CCcCEEEEeCCcCccceecc-ccccc------CCCEEEEEChhhccCCcc
Confidence 999999862 23 35777664 55 78999999987 589995 6 78887 899999999985443221
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+..+ .|+++.++||+++ | +|+|++++++++++.+.
T Consensus 184 -~~~~--~d~~~~s~~K~~g-~-----~G~G~l~~~~~~~~~l~ 218 (362)
T 2c0r_A 184 -DLNQ--FGLVYAGAQKNLG-P-----SGVTVVIVREDLVAESP 218 (362)
T ss_dssp -CGGG--CSEEEEETTTTTC-C-----SSCEEEEEEGGGSSSCC
T ss_pred -chhH--CcEEEEecccccc-C-----cCcEEEEEcHHHHhhcc
Confidence 1222 4999999999986 3 35899999998887764
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-17 Score=151.21 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=118.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~~~g 103 (302)
++-+.+.+++.++.+++++|++. ..++ +.+|+.++.+++..+. .++|+|++....+.+++. .++..|
T Consensus 67 ~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~--------~~gd~v~~~~~~~~~~~~~~~a~~~G 138 (386)
T 3qm2_A 67 GKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLL--------GDKTTADYVDAGYWAASAIKEAKKYC 138 (386)
T ss_dssp ------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHC--------TTCCEEEEEESSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcc--------CCCCeEEEEeCCHHHHHHHHHHHHhC
Confidence 44567889999999999999963 3444 4667776544444432 467887655554444543 345778
Q ss_pred CEEEEeecC--CCCC-CCHHHHHHHHhccCCCeEEEEEecC-CCceec-cccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 104 MSVEPVSVR--KDGT-IDFSDLETKVKKNKETLSCLMITYP-STFGVF-EENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 104 ~~v~~i~~~--~~g~-iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~-~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
+++.+|++ ++|. +|+++++++++ ++|++|++++- |.+|++ + |+++|+ +|+++++|++|.++...+
T Consensus 139 -~v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~-pi~~i~-----~g~~~~vDa~qs~g~~pi 208 (386)
T 3qm2_A 139 -APQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGIAID-ETPDFG-----PEVVVTADFSSTILSAPL 208 (386)
T ss_dssp -EEEEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTEECC-CCCCCC-----TTCCEEEECTTTTTSSCC
T ss_pred -CeEEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCEecC-chhhhc-----CCCEEEEEcccccCCCCC
Confidence 99999997 5675 88888888887 78888888873 567996 8 798886 799999999986555443
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+..++ |++++++||+++ | +|+|++++++++.++++
T Consensus 209 -dv~~~--~~~~~s~hK~lG-P-----~G~g~l~v~~~~~~~~~ 243 (386)
T 3qm2_A 209 -DVSRY--GVIYAGAQKNIG-P-----AGLTLVIVREDLLGKAH 243 (386)
T ss_dssp -CGGGC--SEEEEETTTTTC-C-----TTEEEEEEEGGGCSCCC
T ss_pred -Ccccc--CEEEEecccccC-C-----CccEEEEECHHHHhhhc
Confidence 34445 567788899985 5 68999999998876554
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=142.98 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=117.3
Q ss_pred HHHHHHhCCCee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC---CCC
Q psy7357 41 TDLCEITGYDKI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR---KDG 115 (302)
Q Consensus 41 ~~l~~l~g~~~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~---~~g 115 (302)
++|+++ |++.. .++..+|++ +.++++++... .+...+++||+|+..|-+....+...|+++++++.. +..
T Consensus 124 d~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r----~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~ 198 (501)
T 3hl2_A 124 DIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLR----HKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDEL 198 (501)
T ss_dssp HHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHH----HHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEE
T ss_pred HHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcC----cccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeeccccc
Confidence 356655 99753 333334443 45455554331 111134899999999988888888999999999862 335
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecCC-Cce-eccccHHHHHHHHHHhCCEEEEecCCcccccccC----CCCccC-CcE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYPS-TFG-VFEENITDVCELIHEHGGQVYLDGANMNAQVGLC----RPGDYG-SDV 188 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G-~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~----~p~~~g-aDi 188 (302)
.+|+++++++|++++.+..++++.+|+ +.| ... |+++|+++||++|++++||+||........ .....| +|+
T Consensus 199 ~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~d-dI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~ 277 (501)
T 3hl2_A 199 RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPD-RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277 (501)
T ss_dssp EECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccc-cHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence 789999999999875344455555554 433 446 899999999999999999998754332110 112346 999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC-CC----CCCCCCCcc
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS-HL----APFLPVHPL 226 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~-~l----~~~lpg~~~ 226 (302)
++.|+||++..|. +.|++++++ ++ ....||+..
T Consensus 278 vVqS~HK~llvpI-----GG~ii~~~d~e~l~~~~~~yPGr~S 315 (501)
T 3hl2_A 278 FVQSLDKNFMVPV-----GGAIIAGFNDSFIQEISKMYPGRAS 315 (501)
T ss_dssp EEEEHHHHHCCCS-----SCEEEEESCHHHHHHHHHTSCSCBC
T ss_pred EEecccccceeec-----CceEEEeCCHHHHHHHHHhCCCCCC
Confidence 9999999998764 235565553 33 334466653
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-16 Score=145.59 Aligned_cols=174 Identities=11% Similarity=0.075 Sum_probs=116.4
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEe---eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQ---PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~---~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
.+|..++.+++.+.+....|. +..++. +.+|+.|...+...+..+ ++||+|+++++.|+.+...++..|
T Consensus 72 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g 145 (412)
T 1yaa_A 72 ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQG 145 (412)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcC
Confidence 456666666666555433331 222333 444555553432222222 578999999999988888888899
Q ss_pred CEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccccc
Q psy7357 104 MSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQVG 177 (302)
Q Consensus 104 ~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~~~ 177 (302)
.+++.+|. ++ ++.+|+++|+++++++++.+.++++++| |++|.+. +++++|+++|+++|+++|+|+++. .....
T Consensus 146 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~ 225 (412)
T 1yaa_A 146 LKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD 225 (412)
T ss_dssp CCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSC
T ss_pred ceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc
Confidence 99999998 53 5779999999999854334566666888 5899873 158899999999999999999873 21111
Q ss_pred -------cCCCCccCC----cEEEeCCCcccCCCCCCCCCcceeEE
Q psy7357 178 -------LCRPGDYGS----DVSHLNLHKTFCIPHGGGGPGMGPIG 212 (302)
Q Consensus 178 -------~~~p~~~ga----Div~~~~hK~l~~p~~~gGp~~G~l~ 212 (302)
+......+. ++++.+.+|+|+.+ |.++|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----GlriG~~~ 267 (412)
T 1yaa_A 226 LDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMY----GERVGCFH 267 (412)
T ss_dssp HHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCG----GGCEEEEE
T ss_pred ccchhHHHHHHHhcCCCCcceEEEeccCCCCCCc----CCcceEEE
Confidence 101111233 46777888988643 67899998
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=143.87 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCE---EEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNV---CLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~---Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
+...++++.+++++|.+.. +.+++|++|+..++.+++.+.. .+||+ |+++.+.|+.+.......|.+++.++
T Consensus 76 ~~~~~l~~~la~~~~~~~v-~~t~ggt~A~~~al~~~~~~~~----~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~ 150 (467)
T 1ax4_A 76 RNYYDLKDKAKELFNYDYI-IPAHQGRGAENILFPVLLKYKQ----KEGKAKNPVFISNFHFDTTAAHVELNGCKAINIV 150 (467)
T ss_dssp HHHHHHHHHHHHHHCCCEE-EEESSHHHHHHHHHHHHHHHHH----HTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECB
T ss_pred ccHHHHHHHHHHHcCCCcE-EEcCCcHHHHHHHHHHHHHhhc----cCCCccceEEEeccccchhhHHHhccCCceeccc
Confidence 3456788999999998653 4566777877677666653211 15676 88884433444556677899988776
Q ss_pred cC----------CCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCc-eecc--ccHHHHHHHHHHhCCEEEEecCCcc--
Q psy7357 111 VR----------KDGTIDFSDLETKVKKNK-ETLSCLMITYP-STF-GVFE--ENITDVCELIHEHGGQVYLDGANMN-- 173 (302)
Q Consensus 111 ~~----------~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~-- 173 (302)
.+ .++.+|+++|++++++++ ++|++|++++| |++ |.+. .++++|+++|+++|+++|+|+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~ 230 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCEN 230 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhc
Confidence 42 145789999999998432 37999999998 577 7652 2689999999999999999998654
Q ss_pred ---------cccccCCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEe-C-CCCCC
Q psy7357 174 ---------AQVGLCRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-S-HLAPF 220 (302)
Q Consensus 174 ---------~~~~~~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~-~l~~~ 220 (302)
...+. ++.+ ..+|+++.+.||+++.| -+|+++.+ + ++++.
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~sK~~g~~------~Gg~~~~~d~~~l~~~ 287 (467)
T 1ax4_A 231 AYFIKARDPKYKNA-TIKEVIFDMYKYADALTMSAKKDPLLN------IGGLVAIRDNEEIFTL 287 (467)
T ss_dssp HHHHHHHCGGGTTC-CHHHHHHHHGGGCSEEEEETTSTTCCS------SCEEEEESSCHHHHHH
T ss_pred chhccccccccCCC-chhhhhhhhccccceEEEeccccCCCC------cceEEEeCCHHHHHHH
Confidence 11111 1112 23789999999988643 23777777 5 55544
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=135.37 Aligned_cols=173 Identities=10% Similarity=0.155 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH-HHhhcC-CCCCEEEEcCCCCc-ccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY-HQAQDA-HHRNVCLIPVSAHG-TNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~-~~~~g~-~~~d~Vlv~~~~hg-~~~~~~~~~g------- 103 (302)
+...++++++++++|.+. .+..++|++|+.+++.+++.. ...++. .++++|+++++.|+ .........+
T Consensus 78 ~~~~~l~~~la~~~g~~~-v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T 3ruy_A 78 DQLGPWYEKVAKLTNKEM-VLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG 156 (392)
T ss_dssp TTHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred HHHHHHHHHHHHhcCCCE-EEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence 567889999999999654 445677888776666655432 111121 23568898888764 4443333221
Q ss_pred -----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEecCCc-
Q psy7357 104 -----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLDGANM- 172 (302)
Q Consensus 104 -----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD~a~~- 172 (302)
.++..++. .|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|+++.
T Consensus 157 ~~~~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~~l~~i~~l~~~~~~~li~De~~~~ 227 (392)
T 3ruy_A 157 FGPMLPGIIVIPY-----GDLEALKAAIT---PNTAAFILEPIQGEAGINI-PPAGFLKEALEVCKKENVLFVADEIQTG 227 (392)
T ss_dssp CCSCCSSEEEECT-----TCHHHHHHHCC---TTEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHTTTCEEEEECTTTT
T ss_pred cCCCCCCCeeeCc-----ccHHHHHHHhc---cCeEEEEEeCccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 12444443 28999999998 78999999998 5899987 5 9999999999999999999983
Q ss_pred cccccc-CCCC--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCCC
Q psy7357 173 NAQVGL-CRPG--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 173 ~~~~~~-~~p~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lpg 223 (302)
.+..+. .... ....|+++++ |+++ || .++|++++++++++.+..
T Consensus 228 ~~~~g~~~~~~~~~~~~d~~~~S--K~l~-----gG~~~~G~~~~~~~~~~~~~~ 275 (392)
T 3ruy_A 228 LGRTGKVFACDWDNVTPDMYILG--KALG-----GGVFPISCAAANRDILGVFEP 275 (392)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTTSCCEEEEECHHHHTTCCT
T ss_pred CCccccchhhhccCCCCCEEEEc--hhhh-----CChhhhEEEEECHHHHhhhcc
Confidence 211111 1111 2346898884 8765 35 789999999887776654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-16 Score=145.40 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=118.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe-eeEeeCch--HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK-ISFQPNSG--AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~-~~~~~~~G--a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+.+..+..+++++++++++|.+. .++..++| ++|+.+++.++. ..+ ++++.|+++...|.. ...++..| +
T Consensus 43 ~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~----~~~-~~g~~vi~~~~~~~~-~~~~~~~g-~ 115 (360)
T 1w23_A 43 SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL----TKG-TIGNYVLTGSWSEKA-LKEAKLLG-E 115 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC----CTT-CEEEEEECSHHHHHH-HHHHHTTS-E
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhc----CCC-CcccEEEecchhHHH-HHHHHHhC-C
Confidence 56788899999999999999962 34444433 455544444432 011 235677776555433 23456779 9
Q ss_pred EEEeecCC-CCCCCHHHHHH-HHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 106 VEPVSVRK-DGTIDFSDLET-KVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 106 v~~i~~~~-~g~iD~~~l~~-~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++.+|+++ +|.+|++++++ +++ ++|++|++++| |++|.+. + +|. +++|+++++|+++......+ +..
T Consensus 116 ~~~v~~~~~~~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~-~--~i~---~~~~~~li~D~a~~~~~~~~-~~~ 185 (360)
T 1w23_A 116 THIAASTKANSYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQY-Q--NFP---EINHAPLIADMSSDILSRPL-KVN 185 (360)
T ss_dssp EEEEEECGGGTSCSCCCGGGCCCC---TTEEEEEEESEETTTTEEC-S--SCC---CCCSSCEEEECTTTTTSSCC-CGG
T ss_pred eEEeecccccCcCCccchHhhccC---CCCCEEEEeCCCCCcceec-c--ccc---ccCCceEEEechhhcCCCCc-Ccc
Confidence 99999976 67789999998 886 78999999998 6899986 3 333 28999999999975432211 122
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+ .|+++.++||+|+ | +|+|++++++++++++..
T Consensus 186 ~--~di~~~s~sK~~~-~-----~G~G~~~~~~~~~~~~~~ 218 (360)
T 1w23_A 186 Q--FGMIYAGAQKNLG-P-----SGVTVVIVKKDLLNTKVE 218 (360)
T ss_dssp G--CSEEEEETTTTTS-C-----TTCEEEEEEHHHHCSCCT
T ss_pred c--CCEEEEEcccccC-C-----CCcEEEEEcHHHHhhccc
Confidence 2 3999999999886 2 358999999877665543
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=141.86 Aligned_cols=151 Identities=11% Similarity=0.112 Sum_probs=108.0
Q ss_pred eCchHHHHHHHHHHHHHHHHhhcCCCC-----CEEEEcCCCCcccHHHHHhCCCE-EEEeecC--CCCCCCHHHHHHHHh
Q psy7357 56 PNSGAQGEYAGLRAIQCYHQAQDAHHR-----NVCLIPVSAHGTNPASAQMAGMS-VEPVSVR--KDGTIDFSDLETKVK 127 (302)
Q Consensus 56 ~~~Ga~a~~a~l~a~~~~~~~~g~~~~-----d~Vlv~~~~hg~~~~~~~~~g~~-v~~i~~~--~~g~iD~~~l~~~i~ 127 (302)
+.+|++|+..++..+..+ ++| |+|+++++.|+.+...++..|.+ ++.+|.+ +++.+|+++|+++++
T Consensus 105 t~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~ 178 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLE 178 (412)
T ss_dssp EEHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHH
Confidence 445556654443222212 467 89999999998888788889999 9999984 456789999999998
Q ss_pred ccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccccc-------cCCCCccC-CcEEEeCCCc
Q psy7357 128 KNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQVG-------LCRPGDYG-SDVSHLNLHK 195 (302)
Q Consensus 128 ~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~~~-------~~~p~~~g-aDiv~~~~hK 195 (302)
++++++++|++++| |++|.+. .++++|+++|+++|+++|+|+++. ....+ +....... -++++.+.+|
T Consensus 179 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 258 (412)
T 1ajs_A 179 NAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSK 258 (412)
T ss_dssp HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred hCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEeccc
Confidence 65567888889999 5899873 258899999999999999999853 22211 10000112 1377888888
Q ss_pred ccCCCCCCCCCcceeEEE---eCC
Q psy7357 196 TFCIPHGGGGPGMGPIGV---KSH 216 (302)
Q Consensus 196 ~l~~p~~~gGp~~G~l~~---~~~ 216 (302)
+|+.+ |.++|++++ +++
T Consensus 259 ~~~~~----G~riG~~~~~~~~~~ 278 (412)
T 1ajs_A 259 NFGLY----NERVGNLTVVAKEPD 278 (412)
T ss_dssp TSCCG----GGCEEEEEEECSSHH
T ss_pred ccCCC----CcceEEEEEecCCHH
Confidence 88643 678999999 665
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=138.42 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=116.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-----eeeE---eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-----KISF---QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-----~~~~---~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~ 100 (302)
.+|..++.+++.+++ .|.+ ..++ .+.+|+.+...+...++.+ .++||+|+++++.|+.+...++
T Consensus 78 ~~g~~~lr~~ia~~~---~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~-----~~~gd~Vlv~~p~y~~~~~~~~ 149 (409)
T 4eu1_A 78 VTGIASFVEEAQKLC---FGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRF-----VANCNRIYGPDVGYPNHESIFA 149 (409)
T ss_dssp TTCCHHHHHHHHHHH---HCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGT-----SSSCCEEEEESSCCTHHHHHHH
T ss_pred CCCcHHHHHHHHHHH---cCCCchhhccCceeeeecccchHHHHHHHHHHHHh-----cCCCCEEEEeCCCcHhHHHHHH
Confidence 456555555544444 3654 1222 3455555543333333322 1578999999999998888888
Q ss_pred hCCCEEEEeecC--CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-cc
Q psy7357 101 MAGMSVEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NA 174 (302)
Q Consensus 101 ~~g~~v~~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~ 174 (302)
..|.+++.+|++ +++.+|+++|++.+++++++++++++++| |++|.+. +++++|+++|+++|+++|+|.++. ..
T Consensus 150 ~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~ 229 (409)
T 4eu1_A 150 KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFA 229 (409)
T ss_dssp HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTT
T ss_pred HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence 999999999983 35678999999999755456777888898 5899874 147779999999999999999863 11
Q ss_pred ccc-------cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeE--EE-eCC
Q psy7357 175 QVG-------LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPI--GV-KSH 216 (302)
Q Consensus 175 ~~~-------~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l--~~-~~~ 216 (302)
... +.. .+...-.+++.+.+|+|+.| |.|+|++ ++ +++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~riG~~~~v~~~~~ 278 (409)
T 4eu1_A 230 TGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY----GHRCGALHISTASAE 278 (409)
T ss_dssp TSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG----GGCCEEEEEECSSHH
T ss_pred cCCcccchHHHHHHHhhCCcEEEEecCcccccCc----cCCceEEEEEeCCHH
Confidence 111 000 01112236667777877654 8899997 44 445
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=144.16 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=114.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC-----
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG----- 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g----- 103 (302)
.+|..++.+++.+++.+-++.+...+..++|++.....+.++. +++|+|+++++.|+.+...++..|
T Consensus 97 ~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~ 168 (432)
T 3ei9_A 97 EQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVMF--------GSNVTIAVQDPSYPAYVDSSVIMGQTGQF 168 (432)
T ss_dssp TTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHH--------CTTCCEEEEESCCTHHHHHHHHHTCSCCE
T ss_pred CCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHHHHHc--------CCCCEEEEeCCCCHHHHHHHHHcCCcccc
Confidence 4565566555555554434666666666667643323333332 688999999999988776665555
Q ss_pred -------CEEEEeecCCCC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCC
Q psy7357 104 -------MSVEPVSVRKDG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 104 -------~~v~~i~~~~~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~ 171 (302)
.+++.+|.++++ ..|+++ . +++++|++++| |++|.+. +++++|+++|+++|+++|+|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~---~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~ 240 (432)
T 3ei9_A 169 NTDVQKYGNIEYMRCTPENGFFPDLST-----V---GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240 (432)
T ss_dssp ETTTTEETTCEEEECCGGGTTSCCGGG-----C---CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred cccccccCceEEeccCcccCCcCChhh-----C---CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccch
Confidence 468888887533 344332 2 67889999999 5899773 25888888899999999999997
Q ss_pred ccc-cccc-CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 172 MNA-QVGL-CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 172 ~~~-~~~~-~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
... .... .. ++..+.++++.+.+|+|+.+ |.++|++++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~r~G~~~~~~~~ 288 (432)
T 3ei9_A 241 AMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFT----GVRLGWTVIPKKL 288 (432)
T ss_dssp GGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTT----TTCCEEEECCTTC
T ss_pred HhhccCCCCCChhhcCCCCCeEEEEecchhccCCc----ccceEEEEEChHH
Confidence 521 1111 01 12234568899889998754 8899999999877
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-14 Score=135.08 Aligned_cols=182 Identities=11% Similarity=0.068 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC-------
Q psy7357 33 EQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG------- 103 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g------- 103 (302)
.+...+++++++++++.+.. .++.++|++|+++++.+++.++..+|...+++|++.++ .||.........+
T Consensus 117 ~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 196 (457)
T 3tfu_A 117 HEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHS 196 (457)
T ss_dssp CHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-----
T ss_pred CHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccc
Confidence 35677999999999976544 45567888888888888877665555334557777665 5565544333211
Q ss_pred ------CEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHHHHHHhCCEEEEecC
Q psy7357 104 ------MSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 104 ------~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ia~~~g~llivD~a 170 (302)
..+..+|.+. .+..|+++|+++++++.+++++|+++. + |++|.+.+ .+++|+++|+++|+++|+|++
T Consensus 197 ~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv 276 (457)
T 3tfu_A 197 LWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEI 276 (457)
T ss_dssp -----CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECT
T ss_pred cccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcC
Confidence 1233444322 223589999999986556788887776 5 57787641 399999999999999999998
Q ss_pred CcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 171 NMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 171 ~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+. +++..... . ....|++++ .|+++ .|.+++|++++++++++.+
T Consensus 277 ~~-g~gr~G~~~a~~~~~~~pdiit~--sK~l~----gG~~~lG~v~~~~~i~~~~ 325 (457)
T 3tfu_A 277 AT-GFGRTGALFAADHAGVSPDIMCV--GKALT----GGYLSLAATLCTADVAHTI 325 (457)
T ss_dssp TT-TTTTTSSSSTHHHHTCCCSEEEE--CGGGG----TTSSCCEEEEEEHHHHHHH
T ss_pred cc-CCccccchhHhHhcCCCceEEEE--Chhhh----CCCcceEEEEEcHHHHHHh
Confidence 63 22111000 1 123688877 48765 2237999999998887766
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=143.31 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhh--cCC-----CCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQ--DAH-----HRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~--g~~-----~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.++++.+++.++++..++..++|++ +. .....++.+.... |.. .+++|+++++.|+.+...++..|.+++.
T Consensus 79 ~~lr~~ia~~~~~~~~~i~~t~G~~~al-~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~ 157 (422)
T 3d6k_A 79 ADIRELWAEALGLPADLVVAQDGSSLNI-MFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMIN 157 (422)
T ss_dssp HHHHHHHHHHHTCCGGGEEECSSCHHHH-HHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhCCChhHEEEecchHHHH-HHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEe
Confidence 4566667777788876777777764 32 1011122221100 000 1357999999988887788888999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEE-EecC-CCceeccc--cHHHHHHHHH-HhCCEEEEecCCcc-cccc----c
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLM-ITYP-STFGVFEE--NITDVCELIH-EHGGQVYLDGANMN-AQVG----L 178 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~-i~~P-n~~G~~~~--di~~I~~ia~-~~g~llivD~a~~~-~~~~----~ 178 (302)
+|.+++| +|+++|++++++ .++++|+ +++| |++|.+.+ ++++|.++|+ ++|+++|+|.++.. .+.. .
T Consensus 158 v~~~~~g-~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~ 234 (422)
T 3d6k_A 158 VPMTDEG-PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIV 234 (422)
T ss_dssp EEEETTE-ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCC
T ss_pred cCCCCCC-CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCC
Confidence 9997766 999999999972 3788888 5777 58998851 3458888888 89999999999842 2211 1
Q ss_pred CC-------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CR-------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~-------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ ++..+.++++.+.+|+ ..| |.|+|++++++++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~S~SK~-~~~----GlriG~~~~~~~l~~~l~ 280 (422)
T 3d6k_A 235 HNVIEFAQAAGNPNRFWFMSSTSKI-THA----GSGVSFFASSKENIEWYA 280 (422)
T ss_dssp CCHHHHHHHTTCTTCEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHH
T ss_pred cChhhHhhccCCCCcEEEEcChhhh-cCc----ccceEEEEeCHHHHHHHH
Confidence 01 1123456888888887 433 789999999987766554
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-14 Score=133.15 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-HHHHHhCC---------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-PASAQMAG--------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~~~~~~~g--------- 103 (302)
+...++++++++++|.+. .+..++|++|+..++.+++.++..++...+++|+++++.|+.+ .......+
T Consensus 81 ~~~~~l~~~la~~~~~~~-v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~ 159 (406)
T 4adb_A 81 EPVLRLAKKLIDATFADR-VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA 159 (406)
T ss_dssp HHHHHHHHHHHHHSSCSE-EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGC
T ss_pred HHHHHHHHHHHhhCCCCe-EEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCC
Confidence 567889999999999884 4456777788767777666443333322347888887765444 33333332
Q ss_pred ---CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCcee-----ccccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 ---MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGV-----FEENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 ---~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~-----~~~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.++..+|. .|+++|+++++ +++++|+++ | |++|. .+ ++++|.++|+++|+++|+|+++. +
T Consensus 160 ~~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~-p~np~g~~~~~~~~-~l~~l~~l~~~~~~~li~De~~~-~ 228 (406)
T 4adb_A 160 PLPADIRHAAY-----NDINSASALID---DSTCAVIVE-PIQGEGGVVPASNA-FLQGLRELCNRHNALLIFDEVQT-G 228 (406)
T ss_dssp SCCSSEEEECT-----TCHHHHHTTCS---TTEEEEEEC-SEETTTTSEECCHH-HHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CCCCCceEeCC-----CcHHHHHHHhc---CCeEEEEEe-CCcCCCCCccCCHH-HHHHHHHHHHHcCCEEEEecccc-C
Confidence 34455554 48999999997 789999988 7 46553 24 79999999999999999999874 2
Q ss_pred ccccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 175 QVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++....+ .....|++++ +|+|+ + |.++|++++++++++.+..
T Consensus 229 ~~~~g~~~~~~~~~~~~d~~t~--sK~~~-~----G~r~G~~~~~~~~~~~~~~ 275 (406)
T 4adb_A 229 VGRTGELYAYMHYGVTPDLLTT--AKALG-G----GFPVGALLATEECARVMTV 275 (406)
T ss_dssp TTTTSSSSHHHHHTCCCSEEEE--CGGGG-T----TSCCEEEEECHHHHHTCCT
T ss_pred CCccchhHHHHhcCCCCCEEEe--chhhc-C----CCCeEEEEEcHHHHhhhcc
Confidence 2111111 1234688877 79887 3 6889999999887766643
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=136.90 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=99.2
Q ss_pred CCCCEEEEcCCCCcccHHHHH----hCCCEEEEeec-CCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--c
Q psy7357 80 HHRNVCLIPVSAHGTNPASAQ----MAGMSVEPVSV-RKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--E 149 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~~~----~~g~~v~~i~~-~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~ 149 (302)
.++|+|+++++.|+.+...++ ..|++++.+|+ +++ +.+|+++|++++++++++++++++++| |++|.+. +
T Consensus 143 ~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~ 222 (448)
T 3meb_A 143 MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEA 222 (448)
T ss_dssp CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHH
T ss_pred CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHH
Confidence 578999999999998888888 89999999998 654 789999999999865456888888998 5899873 1
Q ss_pred cHHHHHHHHHHhCCEEEEecCCc-cccccc-------CCCCccCCc-EEEeCCCcccCCCCCCCCCcceeE--EE
Q psy7357 150 NITDVCELIHEHGGQVYLDGANM-NAQVGL-------CRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPI--GV 213 (302)
Q Consensus 150 di~~I~~ia~~~g~llivD~a~~-~~~~~~-------~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l--~~ 213 (302)
++++|+++|+++|+++++|.++. ...... ......+.+ +++.+.||+|+.| |.|+|++ ++
T Consensus 223 ~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~v~ 293 (448)
T 3meb_A 223 QWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLY----GERIGCLHVVH 293 (448)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCCEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCc----cccceeeeeee
Confidence 57779999999999999999853 222110 000012334 5677778887754 8899998 65
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=128.40 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCCE-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGMS------- 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~~------- 105 (302)
+...++++.+++++|.+.+ +..++|++|+.+++.+++.+... +...+++|+++++ .|+.....++..|.+
T Consensus 82 ~~~~~l~~~la~~~g~~~v-~~~~gg~~a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~ 159 (397)
T 2ord_A 82 RPQMELAELLSKNTFGGKV-FFANTGTEANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFE 159 (397)
T ss_dssp HHHHHHHHHHHHTTTSCEE-EEESSHHHHHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCCeE-EEeCCHHHHHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccC
Confidence 5678899999999996543 45677888776666665432111 1112456776665 456666566666665
Q ss_pred -----EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec----cccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 106 -----VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF----EENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 106 -----v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~----~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
++.+|. .|+++|+++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|+++. .+
T Consensus 160 p~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~-~l~~l~~l~~~~~~~li~De~~~-~~ 229 (397)
T 2ord_A 160 PLVPGFEYFEF-----NNVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKE-FLEEARKLCDEYDALLVFDEVQC-GM 229 (397)
T ss_dssp SCCTTEEEECT-----TCHHHHHHHCC---TTEEEEEECSEECTTTCEECCHH-HHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCeeEecC-----CCHHHHHHHhh---cCeEEEEEecccCCCCcccCCHH-HHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 777775 38999999998 78999999998 689983 5 79999999999999999999984 33
Q ss_pred cccCCC---CccC--CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VGLCRP---GDYG--SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~~~~p---~~~g--aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+....+ ..++ +|++++ +|+|+ +|.++|+++++++++ .+.
T Consensus 230 ~~~g~~~~~~~~~~~~d~~s~--sK~~~-----~G~r~G~~~~~~~~~-~l~ 273 (397)
T 2ord_A 230 GRTGKLFAYQKYGVVPDVLTT--AKGLG-----GGVPIGAVIVNERAN-VLE 273 (397)
T ss_dssp TTTSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECSTTC-CCC
T ss_pred ccCccchhhhhhCCCCCeeee--ccccC-----CCcCeEEEEEchHhc-ccC
Confidence 211111 1223 688866 69887 367899999998877 664
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=131.12 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec-CCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV-RKD 114 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~-~~~ 114 (302)
.++++.+++++|.+..++..++|+ +++.. +++.+ . +|+|+++++.|..+...++..|++++.+|. +++
T Consensus 53 ~~lr~~la~~~~~~~~~i~~t~g~~~al~~---~~~~l------~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~ 122 (350)
T 3fkd_A 53 GTLRQMLAKRNSVDNNAILVTNGPTAAFYQ---IAQAF------R-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI 122 (350)
T ss_dssp HHHHHHHHHHTTCCGGGEEEESHHHHHHHH---HHHHT------T-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHH---HHHHH------C-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc
Confidence 478899999999886666665665 44422 33322 3 789999999988777788899999999998 654
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC-CEEEEecCCcccc-cccC---CCCccCCcE
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG-GQVYLDGANMNAQ-VGLC---RPGDYGSDV 188 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g-~llivD~a~~~~~-~~~~---~p~~~gaDi 188 (302)
+.+++ +++++|++++| |++|.+. +++++.++++.++ .++|+|+++.... .... .....+.++
T Consensus 123 ~~~~~-----------~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i 190 (350)
T 3fkd_A 123 GEADF-----------SNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLV 190 (350)
T ss_dssp GGSCC-----------TTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEE
T ss_pred ccCcc-----------CCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEE
Confidence 44444 46788999999 5899998 7999999998876 6999999873211 1100 112334568
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++.+++|+++.| |.++|++++++++++++..
T Consensus 191 ~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~ 221 (350)
T 3fkd_A 191 MVYSFSHAYGIP----GLRIGYIVANKDFMKRVAA 221 (350)
T ss_dssp EEEESHHHHSCG----GGCCEEEECCHHHHHHHHT
T ss_pred EEecCchhccCc----chheEeEEeCHHHHHHHHH
Confidence 888889998754 7899999998877766543
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=132.64 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccHHHHHhCCCE------
Q psy7357 34 QLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNPASAQMAGMS------ 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~~~~~~~g~~------ 105 (302)
+...++++.+++++|.+...+ ..++|++|+.+++.+++.+ .++++|+++++.| +.+.......|.+
T Consensus 87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~------~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~ 160 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPF 160 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHH------hCCCeEEEEcCCcCCCchhhhhhcCCccccccc
Confidence 567889999999997765544 4556667765666554332 2467777777654 5565555555654
Q ss_pred ------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 106 ------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 106 ------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
+..++. .|+++|+++++ +++++|+++.+ |++|.+. + +++|+++|+++|+++|+|+++. +
T Consensus 161 ~p~~~~~~~~~~-----~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~-~ 230 (395)
T 1vef_A 161 LPLVEPVEFIPY-----NDVEALKRAVD---EETAAVILEPVQGEGGVRP-ATPEFLRAAREITQEKGALLILDEIQT-G 230 (395)
T ss_dssp CSCSSCEEEECT-----TCHHHHHHHCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-T
T ss_pred CCCCCCeeEeCC-----CcHHHHHHHhc---cCEEEEEEeCccCCCCccC-CCHHHHHHHHHHHHHcCCEEEEEeccc-C
Confidence 333332 58999999998 68888876544 4689776 5 9999999999999999999985 2
Q ss_pred ccccCC--C---CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 175 QVGLCR--P---GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~~~--p---~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++.... + ....+|++++ ||+|+ +|+++|++++++++++.+..
T Consensus 231 ~~~~g~~~~~~~~~~~~d~~s~--sK~~~-----~g~~~G~~~~~~~~~~~l~~ 277 (395)
T 1vef_A 231 MGRTGKRFAFEHFGIVPDILTL--AKALG-----GGVPLGVAVMREEVARSMPK 277 (395)
T ss_dssp TTTTSSSSTHHHHTCCCSEEEE--CGGGG-----TTSSCEEEEEEHHHHHTSCT
T ss_pred CccCCchhHhhhcCCCCCEEEE--ccccc-----CCCceEEEEehHHHHhhhcc
Confidence 221111 1 1234788865 79987 25789999999877666643
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-14 Score=131.97 Aligned_cols=173 Identities=15% Similarity=0.177 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHHhCCCE------
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQMAGMS------ 105 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~~~g~~------ 105 (302)
.+...++++++++++|.+.+ +..++|++|+++++.+++.+...+|...+++|+++++. |+.........|.+
T Consensus 98 ~~~~~~l~~~la~~~g~~~v-~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 98 NEPALRLGRKLIDATFAERV-LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp CHHHHHHHHHHHHHSSCSEE-EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred CHHHHHHHHHHHhhCCCCeE-EEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 36778999999999997653 45677888877777777655433332223578887764 55555554444432
Q ss_pred ------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Ccee----ccccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 106 ------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGV----FEENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 106 ------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~----~~~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
+..+|. .|+++|+++++ +++++|++++++ +.|+ .+ ++++|+++|+++|+++|+|+++. +
T Consensus 177 ~p~~~~~~~~~~-----~d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~-~l~~l~~l~~~~gi~lI~Dev~~-g 246 (420)
T 2pb2_A 177 GPKPADIIHVPF-----NDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPE-FLKGLRDLCDEHQALLVFDEVQC-G 246 (420)
T ss_dssp SSCCSCEEEECT-----TCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHH-HHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CCCCCCeEEecC-----CCHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHH-HHHHHHHHHHHcCCEEEEEcCCc-C
Confidence 566664 38999999998 789999887764 5675 24 79999999999999999999983 3
Q ss_pred ccccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 175 QVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++....+ ....+|++++ +|+|+ +|.++|++++++++++.+..
T Consensus 247 ~~~~g~~~~~~~~~~~~diit~--sK~l~-----~G~~iG~~~~~~~l~~~l~~ 293 (420)
T 2pb2_A 247 MGRTGDLFAYMHYGVTPDILTS--AKALG-----GGFPVSAMLTTQEIASAFHV 293 (420)
T ss_dssp TTTTSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHTTCC-
T ss_pred cccCCcHHHHHhcCCCCCeEEe--ccccc-----CCCceEEEEEhHHHHHhhcC
Confidence 3211111 1124798876 58886 36789999999887776643
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=129.17 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=123.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHHhCC------
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQMAG------ 103 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~~~g------ 103 (302)
+..+...+++++++++++.+...++.++|++|+++++.+++.++...|..++++|++.++. ||.........|
T Consensus 88 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 167 (452)
T 3n5m_A 88 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRY 167 (452)
T ss_dssp SEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTT
T ss_pred cCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhcc
Confidence 3446788999999999987655566778888887888877765433332367888888775 454444333222
Q ss_pred ------CEEEEeecCCCC---CCC---------HHHHHHHHh-ccCCCeEEEEEecC--CCceeccc---cHHHHHHHHH
Q psy7357 104 ------MSVEPVSVRKDG---TID---------FSDLETKVK-KNKETLSCLMITYP--STFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 ------~~v~~i~~~~~g---~iD---------~~~l~~~i~-~~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~ 159 (302)
..+..++..... .-| +++|+++++ ++++++++|+++.+ | +|.+.+ .+++|+++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~ 246 (452)
T 3n5m_A 168 QYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQ 246 (452)
T ss_dssp TTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHH
T ss_pred ccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHH
Confidence 134555542211 112 899999997 33367888888876 7 897641 2999999999
Q ss_pred HhCCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 160 EHGGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 160 ~~g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
++|+++|+|+++. ++..+ ..... ....|++++ +|+|+ +| +++|++++++++++.+
T Consensus 247 ~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~~ig~~~~~~~i~~~~ 306 (452)
T 3n5m_A 247 KHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITM--AKGIT-----SAYLPLSATAVKREIYEAF 306 (452)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEE--CGGGG-----TTSSCCEEEEEEHHHHGGG
T ss_pred HcCCEEEEecchhCCCcccccchhhhcCCCCCEEee--ccccc-----CCCcceEEEEECHHHHHHH
Confidence 9999999999874 21111 10011 123688887 48886 37 7999999999888777
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-16 Score=147.15 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 32 YEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..++.+++.+++.+.+| .+..++..++|+ +++.+++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~ 139 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT--------KEGEAVLINSPVYPPFARSVRLNNRKLVS 139 (392)
Confidence 34455555666666667 444455555554 55544444443 57899999999988887777788999999
Q ss_pred eecC-CCC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-ccc--cC
Q psy7357 109 VSVR-KDG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVG--LC 179 (302)
Q Consensus 109 i~~~-~~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~--~~ 179 (302)
+|.+ ++| .+|++++++++++ +++++|++++| |++|.+. +++++|.++|+++|+++|+|+++... ..+ ..
T Consensus 140 ~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 217 (392)
T 3b1d_A 140 NSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHV 217 (392)
Confidence 9985 333 4899999999973 46788999998 5889873 15999999999999999999987421 111 00
Q ss_pred CC---Cc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCC
Q psy7357 180 RP---GD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPV 223 (302)
Q Consensus 180 ~p---~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg 223 (302)
+. .. .+.++++.+.+|+|+.| |.++|++++++ ++++.+..
T Consensus 218 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~ 263 (392)
T 3b1d_A 218 SFNTVSPDFKDFALVLSSATKTFNIA----GTKNSYAIIENPTLCAQFKH 263 (392)
Confidence 11 11 34457788888888644 78999999875 47777654
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=134.16 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=110.1
Q ss_pred HHHHHHHHHH--hC-CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE-EEEeec
Q psy7357 37 GELETDLCEI--TG-YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS-VEPVSV 111 (302)
Q Consensus 37 ~e~~~~l~~l--~g-~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~-v~~i~~ 111 (302)
.++++.++++ .| .+..++..++|+ ++. ..+..+ + +++|+|+++++.|+.+...++..|.+ ++.+|.
T Consensus 78 ~~lr~~la~~l~~g~~~~~~v~~~~G~~~al-~~~~~~---~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 148 (400)
T 3asa_A 78 PALRQKLSEDFYRGFVDAKEIFISDGAKVDL-FRLLSF---F-----GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPC 148 (400)
T ss_dssp HHHHHHHHHTTSTTSSCGGGEEEESCHHHHH-HHHHHH---H-----CSSCEEEEEESCCHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCHHHEEEccChHHHH-HHHHHH---c-----CCCCEEEECCCCcHHHHHHHHHcCCcceEeccc
Confidence 4556666666 57 555555555665 444 222222 1 57899999999987777777888998 999998
Q ss_pred CCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCc-cccccc--CCCCcc-
Q psy7357 112 RKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANM-NAQVGL--CRPGDY- 184 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~-~~~~~~--~~p~~~- 184 (302)
++++..+.+ +++ + +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++. ....+- .....+
T Consensus 149 ~~~~~~~~~-l~~-~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 222 (400)
T 3asa_A 149 LQENAFFPE-FPE-D----THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIP 222 (400)
T ss_dssp CGGGTTCCC-CCT-T----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGST
T ss_pred chhcCcccC-hhh-c----cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCC
Confidence 754332221 211 1 46788999998 58998752 47889999999999999999875 222111 111112
Q ss_pred ---CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 185 ---GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 185 ---gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
+.++++.+.+|+|+.| |.++|++++++++.
T Consensus 223 ~~~~~~i~~~s~sK~~g~~----GlriG~~~~~~~~~ 255 (400)
T 3asa_A 223 DARFCAIEINSFSKPLGFA----GIRLGWTVIPQELT 255 (400)
T ss_dssp TGGGTEEEEEECCGGGTTT----TCCCEEEECCTTCB
T ss_pred CCCCceEEEecchhhcCCc----chheeEEeeChhhc
Confidence 2348888889988754 78999999998874
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-15 Score=137.88 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=116.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCC-----EEEEc-CCCCcccHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRN-----VCLIP-VSAHGTNPASA 99 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d-----~Vlv~-~~~hg~~~~~~ 99 (302)
.+|..++++++.+.+.+.+|.+ ..++..++|+ +|+..++.++. +++| +|+++ ++.|+.+...+
T Consensus 74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~vi~~~~p~~~~~~~~~ 145 (417)
T 3g7q_A 74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA--------GRRADGSTKKVLFPLAPEYIGYADSG 145 (417)
T ss_dssp TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------BC----CCBEEEESSCCCHHHHHC--
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc--------CCCccCCcceEEEeCCCccccchhhc
Confidence 5788788888888887777654 3455555554 55534444332 4544 88997 78765554332
Q ss_pred H------hCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEec
Q psy7357 100 Q------MAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 100 ~------~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~ 169 (302)
. ..+..+..++.+. +..+|+++|+ ++ +++++|++++| |++|.+. +++++|+++|+++|+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De 220 (417)
T 3g7q_A 146 LEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDN 220 (417)
T ss_dssp ---CCEEECCCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cchhhhccccCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeC
Confidence 1 2344555555432 3468999988 55 78999999999 5899875 139999999999999999999
Q ss_pred CCccccccc----CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 170 ANMNAQVGL----CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~~~~~~~----~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++....... ..+...+.++++.+.+| +.. +|.++|++++++++++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~----~G~r~G~~~~~~~~~~~~~ 272 (417)
T 3g7q_A 221 AYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGL----PGSRCGIIIANDKTITAIA 272 (417)
T ss_dssp TTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTC----TTSCCEEEECCHHHHHHHH
T ss_pred CCccccccccccccccCCCCCEEEEEechh-ccC----CCcceEEEEeCHHHHHHHH
Confidence 874211111 12334566788888888 443 3789999999887776653
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-15 Score=144.30 Aligned_cols=183 Identities=8% Similarity=0.048 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHHH-HHHhCC-----CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-
Q psy7357 29 ARGYEQLIGELETDL-CEITGY-----DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ- 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l-~~l~g~-----~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~- 100 (302)
.+|..++++++.+.+ .+..+. +..++..++|++ +...++.++.. +.. -++||+|+++++.|+.+...+.
T Consensus 137 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~--~~l-~~~Gd~Vlv~~P~y~~~~~~~~~ 213 (546)
T 2zy4_A 137 PPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKL--NGL-LKAGDKVAIGMPVFTPYIEIPEL 213 (546)
T ss_dssp SSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHH--TTS-SCTTCEEEEEESCCHHHHHHHHS
T ss_pred CcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhh--hhc-CCCCCEEEEeCCCCccHHHHHHH
Confidence 467767777755543 443332 235666677764 33233322210 000 1578999999999877766544
Q ss_pred -hCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHH--HHhCCEEEEecCCc
Q psy7357 101 -MAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELI--HEHGGQVYLDGANM 172 (302)
Q Consensus 101 -~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia--~~~g~llivD~a~~ 172 (302)
..|.+++.+|.+++ ..+|+++|+++++ +++++|++++| |++|.+. +++++|.++| +++|+++|+|.++.
T Consensus 214 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~ 290 (546)
T 2zy4_A 214 AQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG 290 (546)
T ss_dssp TTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG
T ss_pred cCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch
Confidence 34789999998754 3589999998876 78999999999 5899873 2578889998 78999999999874
Q ss_pred ccccccCCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC-CCCCC
Q psy7357 173 NAQVGLCRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH-LAPFL 221 (302)
Q Consensus 173 ~~~~~~~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~-l~~~l 221 (302)
.-.....+... .+.++++.|.+|+++.| |.|+|+++++++ +++++
T Consensus 291 ~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 291 TFADDFQSLFAICPENTLLVYSFSKYFGAT----GWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp GGSTTCCCHHHHCGGGEEEEEESTTTTTCG----GGCEEEEEEESSCHHHHH
T ss_pred hhcccCcCHHHhCCCCEEEEEeCccccCCC----CcceEEEEECCHHHHHHH
Confidence 21111111111 13468888888888655 889999999875 54443
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=130.33 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=117.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCCE-
Q psy7357 30 RGYEQLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGMS- 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~~- 105 (302)
.|..+...+++++++++++.. ...+..++|++|+++++.+++.+ .++++|++.+ ..|+.+.......+..
T Consensus 82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 155 (439)
T 3dxv_A 82 SASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKA------TGRSGVIAFAGAYHGCTVGSMAFSGHSV 155 (439)
T ss_dssp SSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHCC-----
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHH------hCCCEEEEECCCCCCCcHHHHhhcCCCc
Confidence 455678899999999999543 34556778888877777765543 2344555554 5667666554433322
Q ss_pred -------------EEEeecCCCCCC-----CHHHHHHHHh-ccCCCeEEEEEecCC-Cceecccc----HHHHHHHHHHh
Q psy7357 106 -------------VEPVSVRKDGTI-----DFSDLETKVK-KNKETLSCLMITYPS-TFGVFEEN----ITDVCELIHEH 161 (302)
Q Consensus 106 -------------v~~i~~~~~g~i-----D~~~l~~~i~-~~~~~t~~V~i~~Pn-~~G~~~~d----i~~I~~ia~~~ 161 (302)
+..+|.+.++.. |+++|+++++ .+.+++++|+++.++ ++|.+. + +++|+++|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~ 234 (439)
T 3dxv_A 156 QADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIV-PPDGFLRKFADICRAH 234 (439)
T ss_dssp --------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHHT
T ss_pred hhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHc
Confidence 233444322222 7999999993 333677888777653 677775 4 99999999999
Q ss_pred CCEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
|+++|+|+++. +++....+ . ....|++++ +|+|+ +|.++|++++++++++.+..
T Consensus 235 ~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~riG~~~~~~~~~~~~~~ 293 (439)
T 3dxv_A 235 GILVVCDEVKV-GLARSGRLHCFEHEGFVPDILVL--GKGLG-----GGLPLSAVIAPAEILDCASA 293 (439)
T ss_dssp TCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEEEE--CGGGG-----TTSCCEEEEEEHHHHTSCSS
T ss_pred CCEEEEecccc-CCCcCchhhHHHhcCCCCCEEEE--cchhc-----CCcceEEEEECHHHHhhhcC
Confidence 99999999874 22111011 1 123688866 58886 37899999999887776654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-14 Score=132.43 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHhCCCeee-EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDKIS-FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~-~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~~~g-------- 103 (302)
+...++++.++++++.+..+ +..++|++|+..++.+++.+...+| +++++|+++++. |+.........+
T Consensus 86 ~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~ 164 (429)
T 1s0a_A 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSL 164 (429)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHT-CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccC-CCCCeEEEECCCCCCCchhhhhhcCCchhhccc
Confidence 45678888999999765443 4456677777666665554432223 257888988874 554443333221
Q ss_pred -----CEEEEeecCC------CCCCCHHHHHHHHhccCCCeEEEEEecC--CCceecccc----HHHHHHHHHHhCCEEE
Q psy7357 104 -----MSVEPVSVRK------DGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEEN----ITDVCELIHEHGGQVY 166 (302)
Q Consensus 104 -----~~v~~i~~~~------~g~iD~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~~~d----i~~I~~ia~~~g~lli 166 (302)
.++..++++. .+.+|+++|+++++++++++++|++... |++|.+. + +++|+++|+++|+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~-~~~~~l~~i~~l~~~~~~~li 243 (429)
T 1s0a_A 165 WKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM-YHPEWLKRIRKICDREGILLI 243 (429)
T ss_dssp GTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEE-BCTHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCccc-CCHHHHHHHHHHHHHcCCEEE
Confidence 1345555531 2458999999999854456766655443 4689755 3 9999999999999999
Q ss_pred EecCCc-cccccc-C--CCCccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 167 LDGANM-NAQVGL-C--RPGDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 167 vD~a~~-~~~~~~-~--~p~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+|+++. ++..+. . .......|+++++ |+|+ || .++|++++++++++.+
T Consensus 244 ~De~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~l~-----~G~~~iG~~~~~~~~~~~l 296 (429)
T 1s0a_A 244 ADEIATGFGRTGKLFACEHAEIAPDILCLG--KALT-----GGTMTLSATLTTREVAETI 296 (429)
T ss_dssp EECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TSSSCCEEEEECHHHHHHH
T ss_pred EeehhhCCcccchHHHhhhcCCCCCEEEec--cccc-----CCCccceEEEeCHHHHHHh
Confidence 999984 221111 0 1112346888764 8775 36 7899999988776654
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-14 Score=133.53 Aligned_cols=173 Identities=10% Similarity=0.097 Sum_probs=116.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCC----eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD----KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~----~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
++|..++++.+.+++.+..+.. ..++..+.|+ +|...++.++..+ .+ |+|++++|.|+.+...++..|
T Consensus 71 ~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~------~~-d~Vlv~~P~y~~~~~~~~~~g 143 (405)
T 3k7y_A 71 GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKML------NV-ETLYVTNPPYINHVNMIESRG 143 (405)
T ss_dssp TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTT------TC-CEEEEESSCCHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhc------CC-CEEEEeCCCCHhHHHHHHHcC
Confidence 6898888888888875443322 1123334444 5443443333310 27 999999999988888899999
Q ss_pred CEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEecC--CCceec--cccHHHHHHHHHHhCCEEEEecCCc-cccc
Q psy7357 104 MSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITYP--STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQV 176 (302)
Q Consensus 104 ~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~ 176 (302)
.+++.+|+ ++ +..+|+++|++++++. +++++|++++| ||||.. .+++++|.++|+++|++++.|.++. ....
T Consensus 144 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~ 222 (405)
T 3k7y_A 144 FNLKYINFFDYNLIDINYDLFLNDLRNI-PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHT 222 (405)
T ss_dssp CEEEEECCEETTTTEECHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSS
T ss_pred CeEEEEeccccccCCcCHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCC
Confidence 99999998 34 4679999999999743 35567777654 799986 2268899999999999999998863 1111
Q ss_pred ccC-------CCCccCCc-EEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 177 GLC-------RPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 177 ~~~-------~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
... .....+.. |++.|.+|+|+. .|+|+|++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l----~GlRiG~~~~ 263 (405)
T 3k7y_A 223 NLEEDVLLIRKFEEKNIAFSVCQSFSKNMSL----YGERAGALHI 263 (405)
T ss_dssp STTGGGHHHHHHHTTTCCEEEEEECTTTSCC----TTTTEEEEEE
T ss_pred CcccchHHHHHHHhcCCcEEEEeeCCccCCC----ccccceEEEE
Confidence 100 00011223 455556666654 4999999865
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-13 Score=125.23 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccHHHHHh----------
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNPASAQM---------- 101 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~~~~~~---------- 101 (302)
.+...++++++++++|.+. .+..++|++|+.+++.+++.+....| .++++|+++++.| +........
T Consensus 77 ~~~~~~l~~~la~~~~~~~-v~~~~gg~ea~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 154 (395)
T 3nx3_A 77 NENIAAAAKNLAKASALER-VFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPF 154 (395)
T ss_dssp CHHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGG
T ss_pred CHHHHHHHHHHHHhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCccccccc
Confidence 4678899999999999654 45567788887777777665543333 3567888877755 444333221
Q ss_pred --CCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCc-cc
Q psy7357 102 --AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANM-NA 174 (302)
Q Consensus 102 --~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~-~~ 174 (302)
.+.++..+|. .|+++|+++++ +++++|++..+ |++|.+.++ +++|+++|+++|+++|+|+++. ++
T Consensus 155 ~~~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 226 (395)
T 3nx3_A 155 KPLISGVKFAKY-----NDISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMG 226 (395)
T ss_dssp CSCCSCEEEECT-----TCHHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CCCCCCcEEeCC-----CCHHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 1245666664 28999999997 78888888775 567777522 9999999999999999999874 21
Q ss_pred ccc-cC--CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC-CCCCC
Q psy7357 175 QVG-LC--RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL-APFLP 222 (302)
Q Consensus 175 ~~~-~~--~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l-~~~lp 222 (302)
..+ .. .......|+++++ |+|+ +|+++|++++++++ .+.+.
T Consensus 227 ~~g~~~~~~~~~~~~d~~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~~ 271 (395)
T 3nx3_A 227 RSGKFFAYEHAQILPDIMTSA--KALG-----CGLSVGAFVINQKVASNSLE 271 (395)
T ss_dssp TTSSSSGGGGGTCCCSEEEEC--GGGT-----TTSCCEEEEECHHHHHHHSC
T ss_pred cCCcchhHHhcCCCCCEEEec--cccc-----CCCceEEEEEchhhhhhhcC
Confidence 111 00 1112346888774 8876 26899999999887 66554
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=134.65 Aligned_cols=185 Identities=13% Similarity=0.160 Sum_probs=114.3
Q ss_pred cHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHHhCCC----
Q psy7357 31 GYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQMAGM---- 104 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~~~g~---- 104 (302)
+..+...+++++++++++.+.. .+..++|++|+++++.+++.++..+|..++++|++.++.|..+.. .....+.
T Consensus 69 ~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 148 (430)
T 3i4j_A 69 FSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARR 148 (430)
T ss_dssp CEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC------------------
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccc
Confidence 4446778899999999986543 445666778877888777766555554457888888876543332 2211111
Q ss_pred ----------EEEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC--C-Cceeccc---cHHHHHHHHHHhCCEE
Q psy7357 105 ----------SVEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP--S-TFGVFEE---NITDVCELIHEHGGQV 165 (302)
Q Consensus 105 ----------~v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P--n-~~G~~~~---di~~I~~ia~~~g~ll 165 (302)
++..+|.+.. +..|+++|+++++++.++..++++++| + ++|.+.+ .+++|+++|+++|+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l 228 (430)
T 3i4j_A 149 ELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIF 228 (430)
T ss_dssp -------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEE
T ss_pred cccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 3334444322 334779999999754323334445555 3 5666541 2899999999999999
Q ss_pred EEecCCc-ccccc-cCCCC---ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 166 YLDGANM-NAQVG-LCRPG---DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 166 ivD~a~~-~~~~~-~~~p~---~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
|+|+++. ++..+ ..... ....|+++++ |+|+ +| .++|++++++++++.+.
T Consensus 229 i~DEv~~~~~~~g~~~~~~~~~~~~~di~t~s--K~l~-----~G~~r~G~~~~~~~i~~~~~ 284 (430)
T 3i4j_A 229 IADEVMSGMGRCGSPLALSRWSGVTPDIAVLG--KGLA-----AGYAPLAGLLAAPQVYETVM 284 (430)
T ss_dssp EEECTTTTTTTTSSSSGGGGTTTCCCSEEEEC--GGGT-----TTSSCCEEEEECHHHHHHHH
T ss_pred EEechhhCCCcccchhhhhhhcCCCCcEEEEc--cccc-----CCccccEEEEECHHHHHHHh
Confidence 9999874 21111 10011 2236888874 8876 37 89999999988776553
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=130.52 Aligned_cols=168 Identities=22% Similarity=0.252 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccHHHHHhCCC--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNPASAQMAGM-------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~~~~~~~g~-------- 104 (302)
+...++++++++.++-....+..++|++|+++++.+++.+ .++++|++.++.| +.........|.
T Consensus 95 ~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 168 (434)
T 3l44_A 95 ALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTP 168 (434)
T ss_dssp HHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCC
Confidence 4556788889998852223456678888877777766543 3567888877654 443332222222
Q ss_pred -----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecccc----HHHHHHHHHHhCCEEEEe
Q psy7357 105 -----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEEN----ITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 105 -----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~d----i~~I~~ia~~~g~llivD 168 (302)
++..+|. .|+++|+++++++++++++|++..+| ++|.+. + +++|+++|+++|+++|+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~illI~D 242 (434)
T 3l44_A 169 DSAGVPQSIAQEVITVPF-----NNVETLKEALDKWGHEVAAILVEPIVGNFGIVE-PKPGFLEKVNELVHEAGALVIYD 242 (434)
T ss_dssp SSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHTTTCEEEEE
T ss_pred CcCCCCCcCCCceEecCc-----ccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEe
Confidence 2222332 28999999998654567766666544 567765 4 999999999999999999
Q ss_pred cCCcccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 169 GANMNAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 169 ~a~~~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++. ++ ...... ....|++++ +|+|+ ||+++|++++++++++.+.
T Consensus 243 Ev~~-g~-~~g~~~~~~~~~~~~di~t~--sK~~~-----~G~~iG~~~~~~~i~~~~~ 292 (434)
T 3l44_A 243 EVIT-AF-RFMYGGAQDLLGVTPDLTAL--GKVIG-----GGLPIGAYGGKKEIMEQVA 292 (434)
T ss_dssp CTTT-TT-TSSSSCHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBT
T ss_pred cccc-ce-eccccHHHHHcCCCCCeeeh--hhhhc-----CCcCeeeEEEcHHHHHhhc
Confidence 9873 11 100000 123688877 48886 4789999999988877664
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-12 Score=124.86 Aligned_cols=174 Identities=15% Similarity=0.196 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHH-hhcCCCC-CEEEEcCCCC-cccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQ-AQDAHHR-NVCLIPVSAH-GTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~-~~g~~~~-d~Vlv~~~~h-g~~~~~~~~~g------- 103 (302)
+...++++.+++++|.+.+ +..++|++|+++++.+++.+.. .+|..++ ++|+++++.| +.........|
T Consensus 107 ~~~~~l~~~la~~~g~~~v-~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 185 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYDKV-LMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 185 (433)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred HHHHHHHHHHHhhcCCCeE-EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence 5678889999999997653 5567888887777776664421 1111234 8888887654 44333333323
Q ss_pred -----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 -----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 -----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.++..+|. .|+++|+++++ .+++++|+++.. +++|.+. .++++|+++|+++|+++|+|+++. +
T Consensus 186 ~~p~~~~v~~~~~-----~d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g 257 (433)
T 1z7d_A 186 FGPFAPQFSKVPY-----DDLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G 257 (433)
T ss_dssp ------CEEEECT-----TCHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CCCCCCCeEEeCC-----CCHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-C
Confidence 24555554 38999999994 167877666532 3578653 269999999999999999999984 3
Q ss_pred ccccCCC---C--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCCC
Q psy7357 175 QVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lpg 223 (302)
++..... . ...+|++++ +|+|+ || .++|++++++++++.+..
T Consensus 258 ~g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~ 305 (433)
T 1z7d_A 258 LGRTGKLLCVHHYNVKPDVILL--GKALS-----GGHYPISAVLANDDIMLVIKP 305 (433)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTCCT
T ss_pred CCcCCcchhhHhcCCCCCEEEE--Ccccc-----CCCCCeEEEEECHHHHhhhcc
Confidence 3211111 1 124798866 58776 36 679999999887776643
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-14 Score=133.33 Aligned_cols=173 Identities=15% Similarity=0.179 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH-HHhhcCCCCCEEEEcCCCCccc-HHHHHhCCCEEEEe---
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY-HQAQDAHHRNVCLIPVSAHGTN-PASAQMAGMSVEPV--- 109 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~-~~~~g~~~~d~Vlv~~~~hg~~-~~~~~~~g~~v~~i--- 109 (302)
...++++++++++|.+.+ +.+.+|++|+.+++.+++.. +...|..++|+|+++ ..|+.. .......|..+...
T Consensus 75 ~~~~l~~~la~~~~~~~v-~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~ 152 (467)
T 2oqx_A 75 SYYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIK 152 (467)
T ss_dssp HHHHHHHHHHHHHCCSEE-EEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCT
T ss_pred hhHHHHHHHHHHhCcCcE-EEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchhhhhccCcceeecccc
Confidence 456888999999998754 44566777776666665521 000021111777776 556432 23344556666543
Q ss_pred ---ecC----CCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCc-eecc--ccHHHHHHHHHHhCCEEEEecCCcc----
Q psy7357 110 ---SVR----KDGTIDFSDLETKVKKNK-ETLSCLMITYP-STF-GVFE--ENITDVCELIHEHGGQVYLDGANMN---- 173 (302)
Q Consensus 110 ---~~~----~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~---- 173 (302)
+.+ .++.+|+++|++++++++ ++|++|++++| |++ |.+. +++++|+++|+++|+++|+|+++..
T Consensus 153 ~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~ 232 (467)
T 2oqx_A 153 EAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAY 232 (467)
T ss_dssp TTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHH
T ss_pred ccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhh
Confidence 222 346789999999998432 37899999988 465 6642 2689999999999999999987644
Q ss_pred -------cccccCCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 174 -------AQVGLCRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 174 -------~~~~~~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
...+. ++.. ..+|+++++.||+++.| .+|+++++++
T Consensus 233 ~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~s~sK~~g~~------~Gg~~~~~~~ 281 (467)
T 2oqx_A 233 FIKQREAEYKDW-TIEQITRETYKYADMLAMSAKKDAMVP------MGGLLCMKDD 281 (467)
T ss_dssp HHHHHCGGGTTS-CHHHHHHHHGGGCSEEEEESSSTTCCS------SCEEEEECSG
T ss_pred hcccccccccCc-cHHHHhhhhhccCCeEEEecccccCCC------CceEEEecCh
Confidence 11111 2222 24789899999998643 2377887766
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=123.30 Aligned_cols=174 Identities=14% Similarity=0.194 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcCCCC-CEEEEcCC-CCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDAHHR-NVCLIPVS-AHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~~~~-d~Vlv~~~-~hg~~~~~~~~~g------- 103 (302)
+...++++.+++++|.+. .+..++|++|+++++.+++.|... +|..++ ++|++.++ .|+.........|
T Consensus 118 ~~~~~l~~~la~~~g~~~-v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 196 (439)
T 2oat_A 118 NVLGEYEEYITKLFNYHK-VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 196 (439)
T ss_dssp SSHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCE-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccC
Confidence 456788889999999765 355678888877777776644211 111233 77787775 4566555554444
Q ss_pred -----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 -----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 -----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.+++.+|. .|+++|+++++. +++++|+++.. +++|.+. +++++|+++|+++|+++|+|+++. +
T Consensus 197 ~~p~~~~v~~~~~-----~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g 268 (439)
T 2oat_A 197 FGPFMPGFDIIPY-----NDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-G 268 (439)
T ss_dssp SCSCCTTEEEECS-----SCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CCCCCCCeEEeCC-----CCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C
Confidence 46677775 389999999952 67777766533 3578653 169999999999999999999983 3
Q ss_pred ccccCCC---C--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCCC
Q psy7357 175 QVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 175 ~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lpg 223 (302)
++..... . ...+|++++ +|+|+ || .++|++++++++++.+..
T Consensus 269 ~g~~g~~~~~~~~~~~~Di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~ 316 (439)
T 2oat_A 269 LARTGRWLAVDYENVRPDIVLL--GKALS-----GGLYPVSAVLCDDDIMLTIKP 316 (439)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTSCT
T ss_pred CccCCcchhHHHhCCCCcEEEe--ccccc-----CCCCCeEEEEECHHHHhccCC
Confidence 3211111 1 124698866 58876 35 679999999887776643
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-12 Score=123.66 Aligned_cols=175 Identities=13% Similarity=0.171 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHh-C-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHHhCCCE-----
Q psy7357 34 QLIGELETDLCEIT-G-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQMAGMS----- 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~-g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~~~g~~----- 105 (302)
+...++++.+++++ | .+...+..++|++|+.+++..++.+. +++ +|++.++. |+.........|.+
T Consensus 84 ~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-----~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~ 157 (426)
T 1sff_A 84 EPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSA 157 (426)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-----TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTT
T ss_pred HHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-----CCC-eEEEECCCcCCCchHhhhhcCCcccccc
Confidence 55678888899998 5 21334455666677655555333332 344 67776665 45555555555443
Q ss_pred --------EEEeecCC-----CCCCCHHHHHHHHhcc--CCCeEEEEEe-cCCCceecccc----HHHHHHHHHHhCCEE
Q psy7357 106 --------VEPVSVRK-----DGTIDFSDLETKVKKN--KETLSCLMIT-YPSTFGVFEEN----ITDVCELIHEHGGQV 165 (302)
Q Consensus 106 --------v~~i~~~~-----~g~iD~~~l~~~i~~~--~~~t~~V~i~-~Pn~~G~~~~d----i~~I~~ia~~~g~ll 165 (302)
++.+|++. ++.+|+++|++++++. .+++++|+++ +|+.+|.+. + +++|.++|+++|+++
T Consensus 158 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~-~~~~~l~~l~~l~~~~~~~l 236 (426)
T 1sff_A 158 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYA-SSPAFMQRLRALCDEHGIML 236 (426)
T ss_dssp TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCB-CCHHHHHHHHHHHHHHTCEE
T ss_pred ccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCccc-CCHHHHHHHHHHHHHcCCEE
Confidence 77788753 1247999999999731 1467777664 344589665 5 999999999999999
Q ss_pred EEecCCccccccc---C--CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 166 YLDGANMNAQVGL---C--RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 166 ivD~a~~~~~~~~---~--~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
|+|+++. .++.. . ......+|++++ +|+|+ . |.++|++++++++++.+..
T Consensus 237 i~De~~~-~~~~~g~~~~~~~~~~~~di~s~--sK~~~----~-GlriG~~~~~~~~~~~l~~ 291 (426)
T 1sff_A 237 IADEVQS-GAGRTGTLFAMEQMGVAPDLTTF--AKSIA----G-GFPLAGVTGRAEVMDAVAP 291 (426)
T ss_dssp EEECTTT-TTTTTSSSSGGGGTTSCCSEEEE--CGGGG----T-SSCCEEEEEEHHHHTTSCT
T ss_pred EEechhh-ccCcccchhhhhhcCCCCCEEEE--ccccc----C-CCceEEEEEcHHHHhhhcc
Confidence 9999985 23210 0 111124788766 59886 2 5789999999887777654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-12 Score=123.66 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCC----
Q psy7357 31 GYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGM---- 104 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~---- 104 (302)
+..+...+++++++++++.+.. .++.++|++|+++++.+++.+...+|..++++||+.++ .||.........+.
T Consensus 96 ~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~ 175 (472)
T 3hmu_A 96 TTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMH 175 (472)
T ss_dssp EECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhc
Confidence 3446778899999999976544 45567888998888888887765555445677777766 55655444333221
Q ss_pred -------EEEEeecCC-----CCCCC--------HHHHHHHHhccC-CCeEEEEEecCC-Cceecccc----HHHHHHHH
Q psy7357 105 -------SVEPVSVRK-----DGTID--------FSDLETKVKKNK-ETLSCLMITYPS-TFGVFEEN----ITDVCELI 158 (302)
Q Consensus 105 -------~v~~i~~~~-----~g~iD--------~~~l~~~i~~~~-~~t~~V~i~~Pn-~~G~~~~d----i~~I~~ia 158 (302)
.+..+|.+. ++ .| +++|++++++.. +++++|++..++ +.|.+. + +++|+++|
T Consensus 176 ~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~-~~~~~l~~l~~l~ 253 (472)
T 3hmu_A 176 AQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIV-APDSYWPEIQRIC 253 (472)
T ss_dssp HTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBC-CCTTHHHHHHHHH
T ss_pred cccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCccc-CCHHHHHHHHHHH
Confidence 355555422 12 34 889999997543 456666665543 567765 4 99999999
Q ss_pred HHhCCEEEEecCCcccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 159 HEHGGQVYLDGANMNAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 159 ~~~g~llivD~a~~~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++|+++|+|+++. +++...... ...+|+++++ |+++ .||+++|++++++++++.+.
T Consensus 254 ~~~gillI~DEv~~-gfgr~G~~~a~~~~~v~pdi~t~s--K~l~----gg~~plG~v~~~~~i~~~~~ 315 (472)
T 3hmu_A 254 DKYDILLIADEVIC-GFGRTGNWFGTQTMGIRPHIMTIA--KGLS----SGYAPIGGSIVCDEVAHVIG 315 (472)
T ss_dssp HHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC--GGGT----TTSSCCEEEEEEHHHHHHHT
T ss_pred HHcCCEEEEEcccc-CCcccCccchhHHhCCCCceeeec--hhhh----cCCcceEEEEECHHHHHhcc
Confidence 99999999999874 221110010 1236898874 8765 35589999999998877663
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=128.26 Aligned_cols=172 Identities=19% Similarity=0.294 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCCEEEEeec
Q psy7357 34 QLIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~~v~~i~~ 111 (302)
+...+++++++++++ .+ ..+..++|++|+++++.+++.+ .++++|++.++ .|+.........|..+..++.
T Consensus 93 ~~~~~l~~~la~~~~~~~-~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 165 (429)
T 3k28_A 93 EIENKLAKLVIERVPSIE-IVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGL 165 (429)
T ss_dssp HHHHHHHHHHHHHSTTCS-EEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----
T ss_pred HHHHHHHHHHHHhCCCCC-EEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCC
Confidence 455678888999885 33 3456778888877777766543 34667777655 455443332222221111111
Q ss_pred CC-CCC-------------CCHHHHHHHHhccCCCeEEEEEecCC-Cceecccc----HHHHHHHHHHhCCEEEEecCCc
Q psy7357 112 RK-DGT-------------IDFSDLETKVKKNKETLSCLMITYPS-TFGVFEEN----ITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 112 ~~-~g~-------------iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~d----i~~I~~ia~~~g~llivD~a~~ 172 (302)
.. .+. -|+++|+++++++++++++|++..++ +.|.+. + +++|+++|+++|+++|+|+++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~DEv~~ 244 (429)
T 3k28_A 166 PDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVP-PQPGFLEGLREVTEQNGALLIFDEVMT 244 (429)
T ss_dssp CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCccc-CCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 11 111 18999999998654567776666543 567765 5 9999999999999999999873
Q ss_pred ccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 173 NAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 173 ~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++ ...... ...+|++++ .|+|+ +|+++|++++++++++.+.
T Consensus 245 -g~-~~g~~~~~~~~~~~~di~t~--sK~~~-----~G~~iG~~~~~~~~~~~~~ 290 (429)
T 3k28_A 245 -GF-RVAYNCGQGYYGVTPDLTCL--GKVIG-----GGLPVGAYGGKAEIMRQVA 290 (429)
T ss_dssp -TT-TSSTTHHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHTTBT
T ss_pred -cc-ccCcchHHHHhCCCCceehh--hhhhc-----CCCCeEEEEEcHHHHhhhc
Confidence 22 110000 123688877 48885 3689999999988877663
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=124.36 Aligned_cols=184 Identities=12% Similarity=0.081 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC-----
Q psy7357 31 GYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG----- 103 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g----- 103 (302)
+..+...+++++++++++.+.. .+..++|++|+++++.+++.+...+|..++++|++.++ .||.........+
T Consensus 92 ~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 171 (460)
T 3gju_A 92 HGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFH 171 (460)
T ss_dssp CCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGT
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccc
Confidence 3446788899999999876654 44567788888888888887665555445788888776 4565544333222
Q ss_pred -------CEEEEeecCC-----CCCCC--------HHHHHHHHhccC-CCeEEEEEecCC-Cceeccc---cHHHHHHHH
Q psy7357 104 -------MSVEPVSVRK-----DGTID--------FSDLETKVKKNK-ETLSCLMITYPS-TFGVFEE---NITDVCELI 158 (302)
Q Consensus 104 -------~~v~~i~~~~-----~g~iD--------~~~l~~~i~~~~-~~t~~V~i~~Pn-~~G~~~~---di~~I~~ia 158 (302)
..+..+|... +...| +++|++++++.. +++++|++..++ +.|.+.+ .+++|+++|
T Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~ 251 (460)
T 3gju_A 172 NAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVL 251 (460)
T ss_dssp TTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence 2355565432 11223 689999997433 456666666544 5666541 299999999
Q ss_pred HHhCCEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 159 HEHGGQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 159 ~~~g~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|+++|+|+++. +++..... . ....|+++++ |+++. |++++|++++++++++.+
T Consensus 252 ~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~l~g----G~~~lg~v~~~~~i~~~~ 312 (460)
T 3gju_A 252 KKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLITIA--KGLTS----AYAPLSGVIVADRVWQVL 312 (460)
T ss_dssp HHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC--GGGTT----TSSCCEEEEEEHHHHHHH
T ss_pred HHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeee--hhhcC----CCCCeEEEEECHHHHHHH
Confidence 99999999999874 22111001 0 1236888874 88752 337999999998887766
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-13 Score=126.09 Aligned_cols=184 Identities=14% Similarity=0.190 Sum_probs=119.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC----
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG---- 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g---- 103 (302)
.+..+...++++.++++++.+.. .+..++|++|+++++.+++.+...+|..++++|++.++ .|+.........|
T Consensus 89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~ 168 (449)
T 3a8u_X 89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGN 168 (449)
T ss_dssp SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHH
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhh
Confidence 34446778999999999876654 44566777887777777765544444335788888666 4555554444332
Q ss_pred --------CEEEEeecCCCC-----CCC--------HHHHHHHHhccC-CCeEEEEEecC--CCceecccc----HHHHH
Q psy7357 104 --------MSVEPVSVRKDG-----TID--------FSDLETKVKKNK-ETLSCLMITYP--STFGVFEEN----ITDVC 155 (302)
Q Consensus 104 --------~~v~~i~~~~~g-----~iD--------~~~l~~~i~~~~-~~t~~V~i~~P--n~~G~~~~d----i~~I~ 155 (302)
..+..++++... .+| +++|+++++++. +++++|+ ++| |++|.+. + +++|+
T Consensus 169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi-~~p~~~~tG~~~-~~~~~l~~l~ 246 (449)
T 3a8u_X 169 RKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVF-VEPLAGSAGVLV-PPEGYLKRNR 246 (449)
T ss_dssp HTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEE-ECSSBTTTTCBC-CCTTHHHHHH
T ss_pred ccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEE-EcCccCCCCCcc-CCHHHHHHHH
Confidence 134555543211 246 999999997543 3566655 455 3589876 6 99999
Q ss_pred HHHHHhCCEEEEecCCc-cccccc-CCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 156 ELIHEHGGQVYLDGANM-NAQVGL-CRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~-~~~~~~-~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|+++|+++|+|+++. ++..+. ..... ...|++++ +|+|+. |+.++|++++++++++.+
T Consensus 247 ~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~--sK~l~~----G~~~~G~~~~~~~~~~~l 310 (449)
T 3a8u_X 247 EICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCI--AKQVTN----GAIPMGAVIASTEIYQTF 310 (449)
T ss_dssp HHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGT----TSSCCEEEEEEHHHHHHH
T ss_pred HHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEE--cccccC----CCCceEEEEECHHHHHHh
Confidence 99999999999999983 322111 00011 23688866 488861 226799999998776554
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-12 Score=121.19 Aligned_cols=173 Identities=19% Similarity=0.155 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhCCC-ee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHHhC--------
Q psy7357 34 QLIGELETDLCEITGYD-KI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQMA-------- 102 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~~~-------- 102 (302)
+...++++.+++++|.+ .. .+..++|++++..++.+++. ..+++|+++++. |+.........
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~-------~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~ 158 (419)
T 2eo5_A 86 IPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-------TGRKYIIAFLGGFHGRTFGSISLTASKAVQRS 158 (419)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHT-------TSCCEEEEETTCCCCSSHHHHHHCCSCGGGGC
T ss_pred HHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHH-------hhCCcEEEECCCcCCCCHhhHhhcCCcccccc
Confidence 55678889999999986 43 44455666776565555442 137888888864 55555443321
Q ss_pred C-----CEEEEeecCCCCC----------------CCHHHHH-HHHhccC--CCeEEEEEecCC--Cceeccc---cHHH
Q psy7357 103 G-----MSVEPVSVRKDGT----------------IDFSDLE-TKVKKNK--ETLSCLMITYPS--TFGVFEE---NITD 153 (302)
Q Consensus 103 g-----~~v~~i~~~~~g~----------------iD~~~l~-~~i~~~~--~~t~~V~i~~Pn--~~G~~~~---di~~ 153 (302)
+ .+++.+|.+.+.. +|+++|+ ++++++. +++++|+ ++|+ ++|.+.+ .+++
T Consensus 159 ~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~ 237 (419)
T 2eo5_A 159 IVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAE 237 (419)
T ss_dssp SSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHH
T ss_pred ccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHH
Confidence 1 3678888754321 4789999 9887421 3555554 5663 5796541 2999
Q ss_pred HHHHHHHhCCEEEEecCCc-cccccc-CCCC--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 154 VCELIHEHGGQVYLDGANM-NAQVGL-CRPG--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~~-~~~~~~-~~p~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
|+++|+++|+++|+|+++. ++..+. .... ....|++++ .|+|+ +| .++|+++++++++ .++
T Consensus 238 l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~-----~G~~riG~~~~~~~~~-~~~ 303 (419)
T 2eo5_A 238 LQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITL--AKALG-----GGIMPIGATIFRKDLD-FKP 303 (419)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTTSCCEEEEEEGGGC-CC-
T ss_pred HHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEe--ccccc-----CCccceEEEEEchHhh-cCC
Confidence 9999999999999999974 222111 0001 234688866 48776 37 7999999998887 664
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=122.92 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=114.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccHHHHHhCC-----
Q psy7357 31 GYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNPASAQMAG----- 103 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~~~~~~~g----- 103 (302)
+..+...+++++++++++.+.. .++.++|++|+++++.+++.++...|..++++|++.++.| |.........+
T Consensus 84 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 163 (448)
T 3dod_A 84 MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFH 163 (448)
T ss_dssp SEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccc
Confidence 3446778899999999965543 4556778888878888777654333323368888888754 43322222111
Q ss_pred -------CEEEEeecCCCCC-----------CCHHHHHHHHhccCCCeEEEEEecC--CCceeccc---cHHHHHHHHHH
Q psy7357 104 -------MSVEPVSVRKDGT-----------IDFSDLETKVKKNKETLSCLMITYP--STFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 -------~~v~~i~~~~~g~-----------iD~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~ 160 (302)
..+..+|.+.... .|+++|+++++++.+++++|+++.+ |+.|.+.+ .+++|+++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~ 243 (448)
T 3dod_A 164 HVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTT 243 (448)
T ss_dssp ---------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHH
T ss_pred ccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHH
Confidence 2344455432222 2589999999754467777777654 55675541 29999999999
Q ss_pred hCCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lpg 223 (302)
+|+++|+|+++. ++..+ ..... ....|+++++ |+|+ +|+ ++|++++++++++.+..
T Consensus 244 ~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~-----~G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 244 YDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGIT-----GGYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSSCCEEEEEEHHHHHTTCS
T ss_pred hCCEEEEeccccCCCcccchhhhhhcCCCCCEEEec--cccc-----CCcCceEEEEECHHHHHHhhh
Confidence 999999999874 21111 00011 1236888874 8886 364 89999999887776643
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=122.95 Aligned_cols=169 Identities=14% Similarity=0.209 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC--C------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG--M------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g--~------ 104 (302)
+...+++++++++++-....+..++|++|+++++..++.+ .++++|++.++ .||.........+ .
T Consensus 93 ~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 166 (429)
T 4e77_A 93 EMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQP 166 (429)
T ss_dssp HHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCC------------------C
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCChhhhhhcCCcccccCCC
Confidence 5667888999999862223456778888876777665544 24556666555 5554432221111 1
Q ss_pred -----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecccc----HHHHHHHHHHhCCEEEEe
Q psy7357 105 -----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEEN----ITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 105 -----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~d----i~~I~~ia~~~g~llivD 168 (302)
.+..+|. .|+++|+++++++++++++|++...| +.|.+. + +++|+++|+++|+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~-~~~~~l~~l~~l~~~~~~lli~D 240 (429)
T 4e77_A 167 NSPGVPTDFAKHTLTCTY-----NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIP-PLPEFLPGLRALCDEFGALLIID 240 (429)
T ss_dssp CCTTSCGGGGTTEEEECT-----TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEE
T ss_pred CcCCCCCccCCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEe
Confidence 1222222 28999999998665677766654333 567776 4 999999999999999999
Q ss_pred cCCcccc--cccCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 169 GANMNAQ--VGLCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 169 ~a~~~~~--~~~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++. ++ +...... ....|++++ +|+|+ +|.++|++++++++++.+.
T Consensus 241 Ev~~-g~r~g~~~~~~~~~~~pdi~t~--sK~~~-----~G~~~G~~~~~~~~~~~l~ 290 (429)
T 4e77_A 241 EVMT-GFRVALAGAQDYYHVIPDLTCL--GKIIG-----GGMPVGAFGGRREVMNALA 290 (429)
T ss_dssp ETTT-BTTTBTTCHHHHTTCCCSEEEE--EGGGG-----TTSCCEEEEECHHHHTTBT
T ss_pred cccc-CcccCcchHHHhcCCCCCeeee--ccccc-----CCCCeEEEEECHHHHHHhc
Confidence 9874 11 1000001 123588876 48876 3688999999988877664
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=128.06 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCC--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGM-------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~-------- 104 (302)
+...+++++++++++-....+..++|++|+++++..++.+ .++++|++.++ .|+.+.......+.
T Consensus 92 ~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 165 (427)
T 3fq8_A 92 ALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAY------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLP 165 (427)
T ss_dssp HHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCC
Confidence 5667888999999862223456677888876776555544 23466666655 45544322111111
Q ss_pred -----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecccc----HHHHHHHHHHhCCEEEEe
Q psy7357 105 -----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEEN----ITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 105 -----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~d----i~~I~~ia~~~g~llivD 168 (302)
++..+|.+ |+++|+++++++++++++|+++.++ ++|.+. + +++|+++|+++|+++|+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~D 239 (427)
T 3fq8_A 166 SSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIV-PDAGFLEGLREITLEHDALLVFD 239 (427)
T ss_dssp SCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEe
Confidence 23444432 8999999998665578877777654 677776 5 999999999999999999
Q ss_pred cCCcccc--cccC--CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 169 GANMNAQ--VGLC--RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 169 ~a~~~~~--~~~~--~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++. ++ +... .......|+++++ |+|+ +|.++|++++++++++.+.
T Consensus 240 Ev~~-g~~~g~~~~~~~~~~~~di~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~ 289 (427)
T 3fq8_A 240 EVIT-GFRIAYGGVQEKFGVTPDLTTLG--KIIG-----GGLPVGAYGGKREIMQLVA 289 (427)
T ss_dssp CTTT-BTTTBTTHHHHHTTCCCSEEEEC--GGGG-----TTSSCEEEEECHHHHTTBT
T ss_pred cccc-ccccCcchhhHhcCCCCChhhhh--hhhh-----CCcceEEEEEcHHHHHhhc
Confidence 9874 22 0000 0011235888774 9887 3688999999988877664
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=126.95 Aligned_cols=162 Identities=10% Similarity=0.046 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCe-ee-Ee-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHHhC--CC
Q psy7357 31 GYEQLIGELETDLCEITGYDK-IS-FQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQMA--GM 104 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~-~~-~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~~~--g~ 104 (302)
...+..+++++++++++|++. .+ +. +++|++++.+++.++. +++ .++++...|+.... .+... |.
T Consensus 75 ~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--------~~g-v~~v~~~~~~~~~~~~~~~~~~g~ 145 (398)
T 2fyf_A 75 PVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--------DKR-SLHLTYGEFSAKFASAVSKNPFVG 145 (398)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--------SSC-EEEEECSHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--------CCC-eEEEeCCHHHHHHHHHHHHhCCCC
Confidence 445778999999999999973 23 34 5566666645544432 344 33445454432211 34455 88
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.+|++ ++..+..+ ++ ++|++|++++| |++|.+. |+++|.++ +|+++++|+++......+ .-
T Consensus 146 ~~~~v~~~-~g~~~~~~----i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~---~~~~vivD~a~~~~~~~~---~~ 210 (398)
T 2fyf_A 146 EPIIITSD-PGSAPEPQ----TD---PSVDVIAWAHNETSTGVAV-AVRRPEGS---DDALVVIDATSGAGGLPV---DI 210 (398)
T ss_dssp CCEEEECC-TTCCCCCC----CC---TTCSEEEEESEETTTTEEC-CCCCCTTC---C-CEEEEECTTTTTTSCC---CG
T ss_pred ceEEEecC-CCCCCCcc----cc---CCCCEEEEeCcCCCcceec-chHHhhhh---cCCeEEEEeccccCCccc---Cc
Confidence 99999987 44332221 34 67889999987 6899998 78888887 899999999975432211 11
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.++|+++.++||+|+.+ +|+|++++++++++++
T Consensus 211 ~~~di~~~s~sK~~~~~-----gg~g~l~~~~~~~~~l 243 (398)
T 2fyf_A 211 AETDAYYFAPQKNFASD-----GGLWLAIMSPAALSRI 243 (398)
T ss_dssp GGCSEEEECTTSTTCSC-----SSEEEEEECHHHHHHH
T ss_pred ccCcEEEEecCcccCCC-----CceEEEEECHHHHHHh
Confidence 24899999999998743 2689999998776654
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=125.06 Aligned_cols=185 Identities=13% Similarity=0.152 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC-----
Q psy7357 31 GYEQLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG----- 103 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g----- 103 (302)
+..+...+++++++++++.+. ..++.++|++|+++++.+++.++..+|..++++||+.++ .||.........+
T Consensus 94 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 173 (476)
T 3i5t_A 94 MATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNW 173 (476)
T ss_dssp CBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGC
T ss_pred cCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhc
Confidence 344678899999999985433 245677889998888888887776666555677787776 4555544433222
Q ss_pred -------CEEEEeecCC--CC-CCC--------HHHHHHHHhccC-CCeEEEEEecCC-Cceeccc---cHHHHHHHHHH
Q psy7357 104 -------MSVEPVSVRK--DG-TID--------FSDLETKVKKNK-ETLSCLMITYPS-TFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 -------~~v~~i~~~~--~g-~iD--------~~~l~~~i~~~~-~~t~~V~i~~Pn-~~G~~~~---di~~I~~ia~~ 160 (302)
..+..++... .. ..| +++|++++++.. +++++|+++.++ +.|.+.+ .+++|+++|++
T Consensus 174 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~ 253 (476)
T 3i5t_A 174 PNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEK 253 (476)
T ss_dssp TTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred cccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH
Confidence 1233444321 11 112 889999997543 467777777653 6676531 29999999999
Q ss_pred hCCEEEEecCCc-ccccc-cC--C-CCccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVG-LC--R-PGDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~-~~--~-p~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
+|+++|+|+++. ++..+ .. . .....+|+++++ |+|+ || +++|++++++++++.+.
T Consensus 254 ~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~-----~G~~plg~v~~~~~i~~~~~ 314 (476)
T 3i5t_A 254 HDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVT-----SGYVPLGGLAISEAVLARIS 314 (476)
T ss_dssp TTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGG-----TTSSCCEEEEECHHHHHTTS
T ss_pred cCCEEEEEecccCCccccCceeeecccCCCcchhhhh--hhhc-----CCCcCeEEEEECHHHHHHHh
Confidence 999999999874 21111 10 0 111236899874 8886 36 89999999988777664
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=123.19 Aligned_cols=185 Identities=16% Similarity=0.139 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHHhCC-----
Q psy7357 31 GYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQMAG----- 103 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~~~g----- 103 (302)
+..+...+++++++++++.+.. .+..++|++|+++++.+++.+...+|..++++|++.++. ||.........+
T Consensus 91 ~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 170 (459)
T 4a6r_A 91 TTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMH 170 (459)
T ss_dssp SCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhc
Confidence 3446778999999999876443 445677888888888888776555554457888887765 554444333221
Q ss_pred -------CEEEEeecCC-----CCCCC--------HHHHHHHHhccC-CCeEEEEEecCC-Cceeccc---cHHHHHHHH
Q psy7357 104 -------MSVEPVSVRK-----DGTID--------FSDLETKVKKNK-ETLSCLMITYPS-TFGVFEE---NITDVCELI 158 (302)
Q Consensus 104 -------~~v~~i~~~~-----~g~iD--------~~~l~~~i~~~~-~~t~~V~i~~Pn-~~G~~~~---di~~I~~ia 158 (302)
..+..++... +. .| +++|++++++.. +++++|++..++ +.|.+.+ .+++|+++|
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 249 (459)
T 4a6r_A 171 EQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERIC 249 (459)
T ss_dssp ---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHH
Confidence 1344455321 12 45 889999997543 345555554433 5566541 299999999
Q ss_pred HHhCCEEEEecCCc-ccccc-cCCC--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 159 HEHGGQVYLDGANM-NAQVG-LCRP--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 159 ~~~g~llivD~a~~-~~~~~-~~~p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++|+++|+|+++. ++..+ .... -....|+++++ |+++ .||+++|++++++++++.+.
T Consensus 250 ~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~----gg~~~lg~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 250 RKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLS----SGYLPIGAVFVGKRVAEGLI 311 (459)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGG----TTSSCCEEEEECHHHHHHHH
T ss_pred HHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhc----CCCCCccceeeCHHHHHHhh
Confidence 99999999999874 21111 0000 01236888874 8875 34589999999988877664
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-14 Score=131.17 Aligned_cols=160 Identities=11% Similarity=0.062 Sum_probs=109.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-e-eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEE-EEcCCCCcccHH--HHHhC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-K-ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVC-LIPVSAHGTNPA--SAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-~-~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~V-lv~~~~hg~~~~--~~~~~ 102 (302)
++-+.+.+++.++.+++++|++ . ..++ +.+|+.++ .+++..++ ++|++ .+....+ +++. .++..
T Consensus 45 ~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~---n~~~~~~~------~~~~~~~i~~~~~-~~~~~~~a~~~ 114 (361)
T 3m5u_A 45 TKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF---AMIPMNLA------LNGVCEYANTGVW-TKKAIKEAQIL 114 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH---HHHHHHHC------CSSCEEEEECSHH-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH---HHHHHhcC------CCCeEEEEeCCHH-HHHHHHHHHHc
Confidence 3457799999999999999995 3 3344 44455554 33343331 34433 2222233 2333 45678
Q ss_pred CCEEEEeecCCCCC--CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 103 GMSVEPVSVRKDGT--IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 103 g~~v~~i~~~~~g~--iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
|++++.++++++|. +|+++ + |+ ++|++|.+++. |.+|++.++ | ++ +|+++++|++|.++...+
T Consensus 115 G~~v~~~~~~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~---i---~~-~~~~~~vD~~q~~g~~~i- 180 (361)
T 3m5u_A 115 GVNVKTVASSEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN---Y---PK-TKTPLIVDASSDFFSRKV- 180 (361)
T ss_dssp TCCEEEEEECTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS---C---CC-CSSCEEEECGGGTTSSCC-
T ss_pred CCceEEEecccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc---c---cc-cCCEEEEEcccccCCCCC-
Confidence 99999999988874 57776 3 76 78888888874 567998633 3 33 499999999986555443
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+.. .+|++++++||+++ | ||+|++++++++.++
T Consensus 181 d~~--~~d~~~~s~~K~~g-p-----~G~g~l~~~~~~~~~ 213 (361)
T 3m5u_A 181 DFS--NIALFYGGVQKNAG-I-----SGLSCIFIRKDMLER 213 (361)
T ss_dssp CCT--TEEEEEEETTTTSS-C-----TTCEEEEEEHHHHHH
T ss_pred Ccc--cCCEEEEechhccC-C-----CccEEEEEcHHHHhh
Confidence 232 36999999999985 5 689999999876543
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-14 Score=130.92 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=108.4
Q ss_pred cccH-----HHHHHHHHHHHHHHhCCC--e-eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCC----EEEEcCCCCccc
Q psy7357 29 ARGY-----EQLIGELETDLCEITGYD--K-ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRN----VCLIPVSAHGTN 95 (302)
Q Consensus 29 sqG~-----l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d----~Vlv~~~~hg~~ 95 (302)
.+|. .++++.+.+.+. ..|.+ . .++..++|+ ++...++.++. ++|| +|++++|.|+.+
T Consensus 62 ~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~Gd~~~~~Vlv~~P~y~~~ 132 (391)
T 3bwn_A 62 MTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALS--------SLARSQPVSVVAAAPFYSTY 132 (391)
T ss_dssp TTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHH--------HTSSSSSEEEEECSSCCTHH
T ss_pred CCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhc--------CCCCCCcceEEEcCCCchhH
Confidence 5676 555555555554 33432 2 356666776 44433333332 4678 999999999988
Q ss_pred HHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 96 PASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
...++..|.+++.++.|.++. + . +++++|++++| |++|.+.+ +|++.++.+++++|+|.++...
T Consensus 133 ~~~~~~~g~~~~~~~~d~~~l-~--------~---~~~k~v~l~~p~NPtG~~~~---~l~~~~~~~~~~ii~De~y~~~ 197 (391)
T 3bwn_A 133 VEETTYVRSGMYKWEGDAWGF-D--------K---KGPYIELVTSPNNPDGTIRE---TVVNRPDDDEAKVIHDFAYYWP 197 (391)
T ss_dssp HHHHHTTCBTTEEEEEESTTC-C--------C---CSCEEEEEESSCTTTCCCCC---CCC-----CCCEEEEECTTCST
T ss_pred HHHHHHcCCeEEEecCCHHHc-C--------C---CCCEEEEECCCCCCCchhHH---HHHHHhhcCCCEEEEeCCCCCC
Confidence 888888999999998865432 1 2 57899999999 59998863 4544333344999999987531
Q ss_pred c-cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCCC
Q psy7357 175 Q-VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFLP 222 (302)
Q Consensus 175 ~-~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~lp 222 (302)
. ..+. ...+.+|++.+.+|+|+.| |.|+|++++ ++++++.+.
T Consensus 198 ~~~~l~--~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~l~~~l~ 241 (391)
T 3bwn_A 198 HYTPIT--RRQDHDIMLFTFSKITGHA----GSRIGWALVKDKEVAKKMV 241 (391)
T ss_dssp TTSCCC--CCBCCSEEEEEHHHHHSCG----GGCEEEEEECCHHHHHHHH
T ss_pred CCCccc--cCCCCeEEEEechhhcCCC----ccceEEEEecCHHHHHHHH
Confidence 1 1111 1345689999999998765 889999998 667665553
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=122.18 Aligned_cols=168 Identities=19% Similarity=0.204 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHh-CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHH----------
Q psy7357 33 EQLIGELETDLCEIT-GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQ---------- 100 (302)
Q Consensus 33 l~~~~e~~~~l~~l~-g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~---------- 100 (302)
.+...++++++++++ +.+. .+..++|++|+++++.+++.+ .++++||+.++ .|+.......
T Consensus 95 ~~~~~~l~~~la~~~~~~~~-v~~~~sgseA~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 167 (434)
T 2epj_A 95 GEAEVLLAEKILGYVKRGGM-IRFVNSGTEATMTAIRLARGY------TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYG 167 (434)
T ss_dssp CHHHHHHHHHHHHHHCTTCE-EEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSSGGGSEECC------C
T ss_pred CHHHHHHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHHHHHHh------hCCCeEEEEcCCcCCCCHHHHHhcCCCccccC
Confidence 356788999999999 5554 345677888877777665544 23456666665 4553332211
Q ss_pred ---hCCC------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEE
Q psy7357 101 ---MAGM------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVY 166 (302)
Q Consensus 101 ---~~g~------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~lli 166 (302)
..|+ ++..+|. .|+++|+++++++.+++++|++... +++|.+. + +++|.++|+++|+++|
T Consensus 168 ~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~g~~lI 241 (434)
T 2epj_A 168 VPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEYGDRIAGVIVEPVIANAGVIP-PRREFLAALQRLSRESGALLI 241 (434)
T ss_dssp EESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBC-CCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccC-CCHHHHHHHHHHHHHcCCEEE
Confidence 1233 3555654 3899999999754346766655433 3579876 5 9999999999999999
Q ss_pred EecCCcccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 167 LDGANMNAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 167 vD~a~~~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++. ++ ...... ...+|++++ +|+|+ +|.++|++++++++++.+.
T Consensus 242 ~DEv~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~ 293 (434)
T 2epj_A 242 LDEVVT-GF-RLGLEGAQGYFNIEGDIIVL--GKIIG-----GGFPVGAVAGSREVMSLLT 293 (434)
T ss_dssp EEETTT-TT-TSSTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBT
T ss_pred EEcchh-ce-eCCcchhhHHhCCCCCeeee--cchhc-----CCcceeeeeecHHHHHhhc
Confidence 999985 22 111111 124788866 58886 2577999999988777664
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=116.62 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC----
Q psy7357 31 GYEQLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG---- 103 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g---- 103 (302)
+..+...+++++++++++.+ ...++.++|++|+++++.+++.+ .++++|++.++ .||.........+
T Consensus 104 ~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 177 (453)
T 4ffc_A 104 TPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMP 177 (453)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred CCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCcc
Confidence 33467788999999999743 23556788888887777666643 34567777665 5665554433222
Q ss_pred ---------CEEEEeecCC-----CCCC-------CHHHHHHHHhccCCCeEEEEEecC-C-Cceeccc---cHHHHHHH
Q psy7357 104 ---------MSVEPVSVRK-----DGTI-------DFSDLETKVKKNKETLSCLMITYP-S-TFGVFEE---NITDVCEL 157 (302)
Q Consensus 104 ---------~~v~~i~~~~-----~g~i-------D~~~l~~~i~~~~~~t~~V~i~~P-n-~~G~~~~---di~~I~~i 157 (302)
..+..+|++. .|.. ++++|++.+. ++..++++.+| + +.|.+.+ .+++|+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~---~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l 254 (453)
T 4ffc_A 178 YKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAW 254 (453)
T ss_dssp TTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC---GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred cccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHH
Confidence 1466666541 1211 1355555554 33344555555 3 4455531 29999999
Q ss_pred HHHhCCEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 158 IHEHGGQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 158 a~~~g~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|+++|+++|+|+++. +++..... . ....|+++++ |+|+ +|+++|++++++++++.+.
T Consensus 255 ~~~~~~llI~DEv~~-g~g~~g~~~a~~~~~~~pdi~t~s--K~~~-----~G~~~G~~~~~~~i~~~~~ 316 (453)
T 4ffc_A 255 ASENGVVFIADEVQT-GFARTGAWFASEHEGIVPDIVTMA--KGIA-----GGMPLSAVTGRAELMDAVY 316 (453)
T ss_dssp HHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--GGGG-----TTSSCEEEEEEHHHHTTSC
T ss_pred HHHcCCEEEEecCcc-CCCcccccchhhhcCCCcchHhhh--hhhc-----CCcCeEEEEECHHHHhhhc
Confidence 999999999999873 22111001 1 1235888874 8886 2689999999988877664
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-13 Score=125.78 Aligned_cols=180 Identities=14% Similarity=0.166 Sum_probs=117.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
.+|..++++.+++.+ +|-+ ...++..+|+.|...++..+.. ...+++|+|++++|.|+.|....+..|
T Consensus 86 ~~G~p~lr~aia~~~---~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~----~~~~pgd~V~ip~P~w~~y~~i~~~aG 158 (420)
T 4h51_A 86 ISGYQPFIDEAVKII---YGNTVELENLVAVQTLSGTGAVSLGAKLLTR----VFDAETTPIYLSDPTWPNHYGVVKAAG 158 (420)
T ss_dssp TTCCHHHHHHHHHHH---HC---CGGGEEEEEEEHHHHHHHHHHHHHTT----TSCTTTSCEEEEESCCTHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHh---cCCCccccccceeeecCchHHHHHHHHHHHH----hcCCCCCEEEEecCCchhHHHHHHHcC
Confidence 678888877776654 3422 1234444555443222222211 112589999999999999999999999
Q ss_pred CE-EEEeecC--CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc-cccc
Q psy7357 104 MS-VEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQV 176 (302)
Q Consensus 104 ~~-v~~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~ 176 (302)
++ |..++.. .+..+|.+.+.+.+.+..++++++++.+| ||||.. .+++++|.++|++++++++.|.++. ...+
T Consensus 159 ~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~ 238 (420)
T 4h51_A 159 WKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASG 238 (420)
T ss_dssp CCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred CeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccC
Confidence 87 4445442 24568999999998766678888888888 799986 2269999999999999999998862 1211
Q ss_pred ccC-CC------CccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 177 GLC-RP------GDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 177 ~~~-~p------~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
... .+ .+.+.. +++.+..|+|+ +.|+|+|++.+..+..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~----~~G~RvG~~~~~~~~~~ 285 (420)
T 4h51_A 239 SLDTDAYAARLFARRGIEVLLAQSFSKNMG----LYSERAGTLSLLLKDKT 285 (420)
T ss_dssp CHHHHTHHHHHHHHTTCCCEEEEECTTTSC----CGGGCEEEEEEECSCHH
T ss_pred CcccchHHHHhHHhhCceEEEEeccccccc----cccCceEEEEecccCHH
Confidence 110 00 012223 45555566665 45999999998765443
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=118.48 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC-----
Q psy7357 32 YEQLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG----- 103 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g----- 103 (302)
..+...+++++++++++.+ ...++.++|++|+++++.+++.+ .++++|++.++ .||.........+
T Consensus 102 ~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 175 (451)
T 3oks_A 102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPY 175 (451)
T ss_dssp CCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred CCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence 3467789999999998743 33566788888887887766644 24567777665 5665544433221
Q ss_pred --------CEEEEeecCC---C---C-------CCCHHHHHHHHhcc--CCCeEEEEEecCC-Cceeccc-c--HHHHHH
Q psy7357 104 --------MSVEPVSVRK---D---G-------TIDFSDLETKVKKN--KETLSCLMITYPS-TFGVFEE-N--ITDVCE 156 (302)
Q Consensus 104 --------~~v~~i~~~~---~---g-------~iD~~~l~~~i~~~--~~~t~~V~i~~Pn-~~G~~~~-d--i~~I~~ 156 (302)
..+..+|++. + | ..+++.+++.+++. .+++++|++...+ +.|.+.+ + +++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~ 255 (451)
T 3oks_A 176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255 (451)
T ss_dssp TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence 1566666541 0 1 12355555655421 1345555544323 4566641 2 999999
Q ss_pred HHHHhCCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 157 LIHEHGGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 157 ia~~~g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|+++|+|+++. ++..+ ..... ....|++++ .|+|+ +|+++|++++++++++.+.
T Consensus 256 l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~--sK~l~-----~G~~iG~v~~~~~~~~~~~ 318 (451)
T 3oks_A 256 WCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVT--AKGIA-----GGLPLSAVTGRAEIMDSPH 318 (451)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCEEEEEEHHHHTCSC
T ss_pred HHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeee--hhhhh-----CCcceEEEEECHHHHhhhc
Confidence 9999999999999874 21111 00011 123688877 48886 2689999999988877664
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-12 Score=118.69 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g-------- 103 (302)
+...++++.++++++.+.. .+..++|++|+++++.+++.+ .++++|++.++ .|+.........+
T Consensus 85 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 158 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVG 158 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSC
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCccccccC
Confidence 5677888999999986543 345567778776666655433 23577887776 4565544332211
Q ss_pred ---CEEEEeecCCC------------CCCCHHHHHHHHhccC-CCeEEEEEecC--CCceeccc---cHHHHHHHHHHhC
Q psy7357 104 ---MSVEPVSVRKD------------GTIDFSDLETKVKKNK-ETLSCLMITYP--STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 104 ---~~v~~i~~~~~------------g~iD~~~l~~~i~~~~-~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~~g 162 (302)
..+..++++.. +.+|+++|+++++++. +++++|+ ++| |++|.+.+ .+++|+++|+++|
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 237 (433)
T 1zod_A 159 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARG 237 (433)
T ss_dssp CCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhC
Confidence 13444544211 1246999999997532 3566655 455 46896541 2999999999999
Q ss_pred CEEEEecCCc-cccccc-CCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANM-NAQVGL-CRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~-~~~~~~-~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. ++..+. .... ....|++++ .|+|+ +|.++|++++++++++.+
T Consensus 238 ~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~~ig~~~~~~~~~~~~ 293 (433)
T 1zod_A 238 MLLILDEAQTGVGRTGTMFACQRDGVTPDILTL--SKTLG-----AGLPLAAIVTSAAIEERA 293 (433)
T ss_dssp CEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CHHHH-----TTSSCEEEEECHHHHHHH
T ss_pred CEEEEeccccCCCcCchHhHHhhcCCCCCEEEe--ccccc-----CCCCeeEEEEhHHHHHhh
Confidence 9999999875 221111 0001 124688766 48887 257899999998776554
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=121.60 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHH---------
Q psy7357 32 YEQLIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQ--------- 100 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~--------- 100 (302)
..+...++.++++++++ .+. .+..++|++|+++++.+++.+ .++++||+.++. ||.......
T Consensus 95 ~~~~~~~la~~l~~~~~~~~~-v~~~~gg~eA~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 167 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFPSIRK-LRFTGSGTETTLLALRVARAF------TGRRMILRFEGHYHGWHDFSASGYNSHFDGQ 167 (453)
T ss_dssp SCHHHHHHHHHHHHHCTTCSE-EEEESCHHHHHHHHHHHHHHH------HCCCEEEEECC--------------------
T ss_pred CCHHHHHHHHHHHhhCCCCCE-EEEeCCHHHHHHHHHHHHHHh------hCCCEEEEEcCCcCCCchhhHhhcCCccCCC
Confidence 34567778888888874 333 445677888876776665434 234566777664 443322211
Q ss_pred -hCCCE------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEe
Q psy7357 101 -MAGMS------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 101 -~~g~~------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD 168 (302)
..|+. +..+|. .|+++|+++++++.+++++|++... |++|.+. + +++|.++|+++|+++|+|
T Consensus 168 ~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~-~~~~~l~~l~~l~~~~g~~lI~D 241 (453)
T 2cy8_A 168 PAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTP-VSDSFLREGAELARQYGALFILD 241 (453)
T ss_dssp --------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEE-CCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEe
Confidence 12332 333443 4899999999754346776655432 3578765 5 999999999999999999
Q ss_pred cCCcccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 169 GANMNAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 169 ~a~~~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+++. ++ ...... ...+|++++ +|+|+ +|.++|++++++++++.+..
T Consensus 242 Ev~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 242 EVIS-GF-RVGNHGMQALLDVQPDLTCL--AKASA-----GGLPGGILGGREDVMGVLSR 292 (453)
T ss_dssp CTTT-TT-TTCTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTSSS
T ss_pred cCcc-cc-ccCchhhhHHhCCCCcEEEE--Chhhh-----CCcceEEEechHHHHHHhcc
Confidence 9874 22 111111 123688866 58886 26789999999887776643
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=116.83 Aligned_cols=175 Identities=12% Similarity=0.111 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhC-CCe-eeEeeCchHHHHHHHHHHHHHHHHhh----c--CCCCCEEEEcCCC-CcccHHHHHh---
Q psy7357 34 QLIGELETDLCEITG-YDK-ISFQPNSGAQGEYAGLRAIQCYHQAQ----D--AHHRNVCLIPVSA-HGTNPASAQM--- 101 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g-~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~----g--~~~~d~Vlv~~~~-hg~~~~~~~~--- 101 (302)
+...++++.++++++ .+. ..++.++|++|+++++.+++.+.... + ..++++||+.++. |+........
T Consensus 101 ~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~ 180 (449)
T 2cjg_A 101 VAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNT 180 (449)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCS
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCC
Confidence 567788889999986 332 34566778888877777666553211 0 1137888988875 4433322221
Q ss_pred -----CCC-----EEEEeecCCC--C--------CCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHH
Q psy7357 102 -----AGM-----SVEPVSVRKD--G--------TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCE 156 (302)
Q Consensus 102 -----~g~-----~v~~i~~~~~--g--------~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ 156 (302)
.++ +++.+|.+.. . ..|+++|+++++++.+++++|++... |++|.+. + +++|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~ 259 (449)
T 2cjg_A 181 KPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRH-FRPEFFAAMRE 259 (449)
T ss_dssp CHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEE-CCHHHHHHHHH
T ss_pred chhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCcc-CCHHHHHHHHH
Confidence 222 5677776431 1 25677799999754467887766543 5789654 4 999999
Q ss_pred HHHHhCCEEEEecCCc-ccccccC-CCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 157 LIHEHGGQVYLDGANM-NAQVGLC-RPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 157 ia~~~g~llivD~a~~-~~~~~~~-~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+|+++|+++|+|++|. ++..+.. ... ....|+++++ |+| ++|++++++++++.
T Consensus 260 l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l---------~iG~~~~~~~~~~~ 316 (449)
T 2cjg_A 260 LCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG--KKT---------QVCGVMAGRRVDEV 316 (449)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGG---------SSEEEEECGGGGGS
T ss_pred HHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEec--Ccc---------cEEEEEECHHHhhh
Confidence 9999999999999985 2211110 000 1346888774 877 37889999888776
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=115.08 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHHHH----------
Q psy7357 33 EQLIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPASAQ---------- 100 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~~~---------- 100 (302)
.+...++++.++++++ .+. .+..++|++|+++++.+++.+ .++++|++.++. |+.......
T Consensus 91 ~~~~~~l~~~l~~~~~~~~~-v~~~~~g~ea~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 163 (424)
T 2e7u_A 91 SPLEVALAKKVKRAYPFVDL-VRFVNSGTEATMSALRLARGY------TGRPYIVKFRGNYHGHADGLLVEAGSGALTLG 163 (424)
T ss_dssp CHHHHHHHHHHHHHCTTCCE-EEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCCCGGGSEECCSSSCCBC
T ss_pred CHHHHHHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccC
Confidence 3567888999999984 433 345677888876776654444 234666666664 443332211
Q ss_pred ---hCCC------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC--Cceecccc----HHHHHHHHHHhCCEE
Q psy7357 101 ---MAGM------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS--TFGVFEEN----ITDVCELIHEHGGQV 165 (302)
Q Consensus 101 ---~~g~------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn--~~G~~~~d----i~~I~~ia~~~g~ll 165 (302)
..|+ ++..+|. .|+++|+++++++.+++++|++ +|+ ++|.+. + +++|.++ +++|+++
T Consensus 164 ~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~-ep~~~~~G~~~-~~~~~l~~l~~l-~~~g~~l 235 (424)
T 2e7u_A 164 VPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIF-EPVVGNAGVLV-PTEDFLKALHEA-KAYGVLL 235 (424)
T ss_dssp EESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEE-CSSBCTTSCBC-CCHHHHHHHHHG-GGGTCEE
T ss_pred CCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEE-eCCCCCCCCcC-CCHHHHHHHHHH-HHcCCEE
Confidence 1232 3455553 4899999999743245665555 553 479776 5 9999999 9999999
Q ss_pred EEecCCcccccccCCCC---c--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 166 YLDGANMNAQVGLCRPG---D--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 166 ivD~a~~~~~~~~~~p~---~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|+|+++. ++ ...... . ..+|++++ +|+|+ +|.++|++++++++++.+.
T Consensus 236 I~DEv~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~~~~~~~~~~~~~ 288 (424)
T 2e7u_A 236 IADEVMT-GF-RLAFGGATELLGLKPDLVTL--GKILG-----GGLPAAAYAGRREIMEKVA 288 (424)
T ss_dssp EEECTTT-TT-TSSTTHHHHHHTCCCSEEEE--CGGGG-----TTSSCEEEEECHHHHTTBT
T ss_pred EEecCcc-cc-ccchhHHHHHhCCCcchhhh--hhhhh-----CCcceEEEEEcHHHHhhhc
Confidence 9999975 22 111111 1 23688766 58886 2578999999988777664
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=115.27 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHH-----hCCCEEEEe
Q psy7357 37 GELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQ-----MAGMSVEPV 109 (302)
Q Consensus 37 ~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~-----~~g~~v~~i 109 (302)
.++.+++++++. ++. .++.+||++|+++++..+|.+. .+++|+.. ...||....... ........+
T Consensus 130 ~~lae~l~~~~p~~~~-v~f~~SGsEA~e~AiklAr~~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~ 202 (454)
T 4ao9_A 130 GRLARLICERFPQIEQ-LRFTNSGTEANLMALTAALHFT------GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL 202 (454)
T ss_dssp HHHHHHHHHHSTTCSE-EEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE
T ss_pred HHHHHHHHHhCCCCCE-EEEeCchHHHHHHHHHHHHhcc------cCCeEEEEeCCcCCccccccccccCccCCCCcccC
Confidence 467778888874 444 4567899999889998888773 44555554 456664432211 112344555
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccccccc-CCCCc-
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGD- 183 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~- 183 (302)
|. -|++.+++.++++.+++++|+++.- +..|.+.++ +++|+++|+++|+++|+|+++. +..+. .....
T Consensus 203 p~-----nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~ 276 (454)
T 4ao9_A 203 PY-----NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKL 276 (454)
T ss_dssp CT-----TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHH
T ss_pred CC-----chHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhcc
Confidence 54 3899999999987788999888642 456777522 9999999999999999999875 21111 00011
Q ss_pred -cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 184 -YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 184 -~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+|+++. .|.++ ||-.+|.+.+++++++.+.
T Consensus 277 gv~PDi~t~--gK~lg-----gG~Piga~~~~~ei~~~~~ 309 (454)
T 4ao9_A 277 GIRSDLTTL--GKYIG-----GGMSFGAFGGRADVMALFD 309 (454)
T ss_dssp TCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHGGGC
T ss_pred CCCCcEEEe--ccccC-----CCCcceeeeeHHHHHHHHh
Confidence 13699998 58886 3445888889988777663
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-12 Score=121.78 Aligned_cols=169 Identities=10% Similarity=-0.041 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 32 YEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..++.+++.+.+.+..+ ++..++..++|+ ++...++.++.........++||+|+++++.|+.+...++..|.+++.
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 181 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV 181 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee
Confidence 45555555555544322 444556666666 444344433300000000057899999999988887788888888764
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
.. +|+++|+++++ +++++|++++| |++|.+. + + +++ +...++|.++......+.. ...+.|
T Consensus 182 ~~------~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~-~-~----~l~--~~~~i~d~~~~~~~~s~~~-~~~~~~ 243 (427)
T 2hox_A 182 WA------GNAANYVNVSN---PEQYIEMVTSPNNPEGLLR-H-A----VIK--GCKSIYDMVYYWPHYTPIK-YKADED 243 (427)
T ss_dssp EE------EEGGGGTTCSC---GGGEEEEEESSCTTTCCCC-C-C----SST--TCEEEEECTTCSTTTSCCC-SCBCCS
T ss_pred ec------CCHHHHHHhhc---CCceEEEEcCCCCCccccc-H-H----HHc--CCCEEEeecccCCCCCccc-cCCCce
Confidence 43 57888888776 67899999999 5899987 5 2 223 5677889765321111111 114578
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
|++.+.+|+++.| |.|+|+++++ +++++++.
T Consensus 244 i~~~S~SK~~g~~----G~RiG~~~~~~~~l~~~l~ 275 (427)
T 2hox_A 244 ILLFTMSKFTGHS----GSRFGWALIKDESVYNNLL 275 (427)
T ss_dssp EEEEEHHHHTSCG----GGCCEEEEECCHHHHHHHH
T ss_pred EEEEeChhcCCCC----CceEEEEEECCHHHHHHHH
Confidence 9999999988755 7899999995 67666553
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-12 Score=126.30 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHh-CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHH---HhCCC--E
Q psy7357 33 EQLIGELETDLCEIT-GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASA---QMAGM--S 105 (302)
Q Consensus 33 l~~~~e~~~~l~~l~-g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~---~~~g~--~ 105 (302)
.+...+++++|++++ +.+. .+..+||++|+++++.+++.+ .++++||+.+. .||...... ...|+ .
T Consensus 139 ~~~~~~Lae~L~~~~p~~~~-v~~~nSGseA~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~ 211 (465)
T 2yky_A 139 TENEALFAEAVCDRFPSIDL-VRFTNSGTEANLMALATATAI------TGRKTVLAFDGGYHGGLLNFASGHAPTNAPYH 211 (465)
Confidence 356678888999998 5544 345678988887877766644 45677787776 455443322 12233 3
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccccc-cCC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQVG-LCR 180 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~~-~~~ 180 (302)
+..+|. .|+++|+++++++++++++|++... +.+|.+.+ .+++|+++|+++|+++|+|+++. ...+ ...
T Consensus 212 ~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a 285 (465)
T 2yky_A 212 VVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGA 285 (465)
Confidence 333332 4899999999855467888887642 45787641 39999999999999999999976 2111 001
Q ss_pred CCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 181 PGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 181 p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
...+ .+|++++ +|+++ ||.++|++++++++++.+..
T Consensus 286 ~~~~gv~pDi~t~--sK~lg-----~G~piG~v~~~~~i~~~l~~ 323 (465)
T 2yky_A 286 QEMLGISADLTTL--GKYIG-----GGMSFGAFGGRRDLMERFDP 323 (465)
Confidence 1112 3677755 57776 36789999999999887754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=105.13 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHh--hcC---------------CC---CCEEEEcCC-
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQA--QDA---------------HH---RNVCLIPVS- 90 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~--~g~---------------~~---~d~Vlv~~~- 90 (302)
++..++.+.++++++ .+. .++.++|++|+++++.+++.|+.. ++. .+ +++||+.++
T Consensus 110 ~l~~~la~~l~~~~~~~~~~-v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~ 188 (472)
T 1ohv_A 110 NFVEKLRESLLSVAPKGMSQ-LITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGA 188 (472)
T ss_dssp THHHHHHHTGGGGCCTTCCE-EEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTC
T ss_pred HHHHHHHHHHHHhCCCCcCE-EEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCC
Confidence 556666666666663 433 456788999988888877765421 110 01 477787775
Q ss_pred CCcccHHHHHhCCC--------E---EEEeecCCC-C-------------CCCHHHHHHHHhccCC---CeEEEEEec-C
Q psy7357 91 AHGTNPASAQMAGM--------S---VEPVSVRKD-G-------------TIDFSDLETKVKKNKE---TLSCLMITY-P 141 (302)
Q Consensus 91 ~hg~~~~~~~~~g~--------~---v~~i~~~~~-g-------------~iD~~~l~~~i~~~~~---~t~~V~i~~-P 141 (302)
.||.........|. . +..+++... . ..|+++|+++++++.+ ++++|++.. +
T Consensus 189 yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~ 268 (472)
T 1ohv_A 189 FHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQ 268 (472)
T ss_dssp CCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSB
T ss_pred cccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCc
Confidence 56666554433331 1 112233110 0 1278999999984322 788888865 3
Q ss_pred CCceecccc----HHHHHHHHHHhCCEEEEecCCc-cccccc-CCCCccC----CcEEEeCCCcccCCCCCCCCCcceeE
Q psy7357 142 STFGVFEEN----ITDVCELIHEHGGQVYLDGANM-NAQVGL-CRPGDYG----SDVSHLNLHKTFCIPHGGGGPGMGPI 211 (302)
Q Consensus 142 n~~G~~~~d----i~~I~~ia~~~g~llivD~a~~-~~~~~~-~~p~~~g----aDiv~~~~hK~l~~p~~~gGp~~G~l 211 (302)
|.+|.+. + +++|+++|+++|+++|+|+++. ++..+. .....++ +|+++++ |++ +|| |++
T Consensus 269 ~~~G~~~-~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~-----l~G---G~~ 337 (472)
T 1ohv_A 269 SEGGDNH-ASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKM-----MTG---GFF 337 (472)
T ss_dssp CTTTCBC-CCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGG-----SSE---EEE
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccc-----ccC---Ccc
Confidence 6789876 4 9999999999999999999985 222111 1112234 7888774 873 122 666
Q ss_pred EEeCCCC
Q psy7357 212 GVKSHLA 218 (302)
Q Consensus 212 ~~~~~l~ 218 (302)
+ ++++.
T Consensus 338 ~-~~~~~ 343 (472)
T 1ohv_A 338 H-KEEFR 343 (472)
T ss_dssp E-CGGGS
T ss_pred C-chhhc
Confidence 6 66654
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-09 Score=100.00 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++..+. -.++.+|||+|+++++..++.|+..+|..++.+||... ..||.........|
T Consensus 111 ~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~ 190 (473)
T 4e3q_A 111 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFG 190 (473)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGT
T ss_pred HHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccC
Confidence 445678889999986432 24567899999889999888888777755566666554 57887765443222
Q ss_pred ---CEEEEeecC------CCCCC-------CHHHHHHHHhccC-CCeEEEEEecC-CCceeccc---cHHHHHHHHHHhC
Q psy7357 104 ---MSVEPVSVR------KDGTI-------DFSDLETKVKKNK-ETLSCLMITYP-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 104 ---~~v~~i~~~------~~g~i-------D~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
.....++.. ..+.. ..+++++.+.+.. +++++|++.-- ...|++.+ -+++|+++|+++|
T Consensus 191 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~g 270 (473)
T 4e3q_A 191 LPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYD 270 (473)
T ss_dssp CSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred CCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccc
Confidence 123444432 11221 1345666665433 45677766532 35576632 3899999999999
Q ss_pred CEEEEecCCcccccccCCCCcc--------CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANMNAQVGLCRPGDY--------GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~p~~~--------gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. +++ +.+.+ .+|+++. .|.++ .|+..+|.+++++++++.+
T Consensus 271 ilLI~DEV~t-GfG---RtG~~fa~e~~gv~PDi~t~--~K~l~----gG~~Pl~av~~~~~i~~~~ 327 (473)
T 4e3q_A 271 IPVISDEVIC-GFG---RTGNTWGCVTYDFTPDAIIS--SKNLT----AGFFPMGAVILGPELSKRL 327 (473)
T ss_dssp CCEEEECTTT-SSS---TTSSSCHHHHTTCCCSEEEE--CGGGG----TTSSCCEEEEECHHHHHHH
T ss_pred eEEeccCccc-cCC---cccchhHHHhcCCCCChHHh--ccccc----CCCCCcccccccHHHHHHh
Confidence 9999999863 222 22222 3799998 48886 2336788899998877654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-08 Score=93.56 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++..+. ..++.+||++|+++++...+.+ ..+++|+.. ...||.+.......+
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~------t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~ 180 (456)
T 4atq_A 107 EGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLA------TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKT 180 (456)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhh------hcCCeEEEEecccCCccccccccccCcccccc
Confidence 345577888999986432 2456789999988998888876 344555555 467887755433111
Q ss_pred ------CEEEEeecCC------CCCCCHHHHHHHHhc-----cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhC
Q psy7357 104 ------MSVEPVSVRK------DGTIDFSDLETKVKK-----NKETLSCLMITYP-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 104 ------~~v~~i~~~~------~g~iD~~~l~~~i~~-----~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
-.+..+|... ....+.+.+++.++. ..+++++|+++-- ...|.+.+ -++++.++|+++|
T Consensus 181 ~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~g 260 (456)
T 4atq_A 181 NFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKG 260 (456)
T ss_dssp TSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHT
T ss_pred CCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcC
Confidence 2456666531 122345555544431 1357888887642 34566632 3899999999999
Q ss_pred CEEEEecCCccccccc---CCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 163 GQVYLDGANMNAQVGL---CRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 163 ~llivD~a~~~~~~~~---~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++|+|+++. +.+-. ..-..+ .+|+++.+ |.++ ||-.+|.+++++++++.+.
T Consensus 261 illI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~g--K~lg-----gg~P~~av~~~~~i~~~~~ 317 (456)
T 4atq_A 261 IVFIADEVQS-GFCRTGEWFAVDHEGVVPDIITMA--KGIA-----GGLPLSAITGRADLLDAVH 317 (456)
T ss_dssp CEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGG-----TTSSCEEEEEEHHHHTTSC
T ss_pred CceEeccccc-ccCCccccccccccCCCCchhhhh--hccc-----CcCCceeeEecHHHHhccc
Confidence 9999999873 22111 001112 36999994 8765 3456788888887776653
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.9e-08 Score=98.94 Aligned_cols=180 Identities=11% Similarity=0.044 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHH-HHHHHhhcCC--------CCCEEEEc-CCCCcccHHHHH
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAI-QCYHQAQDAH--------HRNVCLIP-VSAHGTNPASAQ 100 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~-~~~~~~~g~~--------~~d~Vlv~-~~~hg~~~~~~~ 100 (302)
+...++.++|+++++ ++. .++.+||++|+++++..+ +.|+..+|.. .+.+||.. ...||.......
T Consensus 424 ~~~~~Lae~L~~~~p~~~l~~-vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals 502 (831)
T 4a0g_A 424 EPALKCAELLLDGVGKGWASR-VYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAME 502 (831)
T ss_dssp HHHHHHHHHHHHTTTTTTCCE-EEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCE-EEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeee
Confidence 556689999999997 344 466789999988888876 5666544421 24455544 567888876554
Q ss_pred hCCC---------------EE-------------EEeecCCC--C-------CCC------------------HHHHHHH
Q psy7357 101 MAGM---------------SV-------------EPVSVRKD--G-------TID------------------FSDLETK 125 (302)
Q Consensus 101 ~~g~---------------~v-------------~~i~~~~~--g-------~iD------------------~~~l~~~ 125 (302)
..|. .+ ..++.... + .-| .++|++.
T Consensus 503 ~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 582 (831)
T 4a0g_A 503 AQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKH 582 (831)
T ss_dssp TSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred ccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHH
Confidence 3331 11 12222110 0 012 2677887
Q ss_pred Hhc-----cCCCeEEEEEecC--CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccccccCCC---Cc--cCCcEEE
Q psy7357 126 VKK-----NKETLSCLMITYP--STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQVGLCRP---GD--YGSDVSH 190 (302)
Q Consensus 126 i~~-----~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~~~~~p---~~--~gaDiv~ 190 (302)
|++ +.+++++|++..- +..|.+.+ -+++|+++|+++|+++|+|+++. +++..... .. ...|+++
T Consensus 583 l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t-GfGRtG~~fa~e~~gv~PDiit 661 (831)
T 4a0g_A 583 LQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT-GFWRLGVETTTELLGCKPDIAC 661 (831)
T ss_dssp C---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT-TTTTTSBSSTHHHHSSCCSEEE
T ss_pred HHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc-ccccCCCchhhHhcCCCCcEEE
Confidence 763 2356788877652 45566542 28999999999999999999863 22111111 11 1369998
Q ss_pred eCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 191 ~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
. .|.|+ || ..+|++++++++++.+.
T Consensus 662 l--sK~L~-----gG~~Plgav~~~~~i~~~~~ 687 (831)
T 4a0g_A 662 F--AKLLT-----GGMVPLAVTLATDAVFDSFS 687 (831)
T ss_dssp E--CGGGG-----TTSSCCEEEEECHHHHHTTC
T ss_pred E--ecccc-----cCccCcEEEEECHHHHHHHh
Confidence 7 48775 24 57899999988776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 302 | ||||
| d1wyub1 | 471 | c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 | 9e-55 | |
| d1wyua1 | 437 | c.67.1.7 (A:1-437) Glycine dehydrogenase (decarbox | 1e-36 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 6e-31 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 7e-31 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-23 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 8e-17 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 5e-12 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 8e-10 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 3e-04 |
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} Length = 471 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Score = 182 bits (463), Expect = 9e-55
Identities = 108/332 (32%), Positives = 156/332 (46%), Gaps = 40/332 (12%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MK N ++HP+ A+G +L+ EL L +TG D I+ +P +GA
Sbjct: 75 MKYNPKLHEEAARL--FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGA 132
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
GE G+ I+ YH+ + ++ + + + V G
Sbjct: 133 HGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG--YQVREIPSGPEGEV 190
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DLE ++ ++ LM+T P+T G+FE I ++ L E G Q+Y DGAN+NA +G R
Sbjct: 191 DLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWAR 250
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL----------SSID 230
PGD G DV HLNLHKTF +PHGGGGPG GP+GVK+HLAP+LPV +
Sbjct: 251 PGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRP 310
Query: 231 SSIGAVSAAHYGSASILPISWAYIRRL------ESHYKTLFRSSR--------------S 270
SIG V + YG+ L +WAYIR L ++ + +
Sbjct: 311 KSIGRVR-SFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD 369
Query: 271 GLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
G HEFV + A+D+AK L++
Sbjct: 370 GPSMHEFVA-----QPPEGFRALDLAKGLLEL 396
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} Length = 437 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Score = 133 bits (335), Expect = 1e-36
Identities = 41/342 (11%), Positives = 91/342 (26%), Gaps = 61/342 (17%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
+ + + LT P+ P+ ++G Q E +T + E+ G + + GA
Sbjct: 76 HHVPPVVQALAARGEFLTAYTPYQPE-VSQGVLQATFEYQTMIAELAGLEIANASMYDGA 134
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
G+ A + G + + + T
Sbjct: 135 TALAEGVLLALRETGRMGVLVSQGV--HPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLP- 191
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
+ E + +++ P+ G +++ A+ + L
Sbjct: 192 -------EVGEEVGAVVVQNPNFL--GALEDLGPFAEAAHGAGALFVAVADPLSLGVLKP 242
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL-------------- 226
PG YG+D++ + ++ +P G GGP G + K LP +
Sbjct: 243 PGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFIL 301
Query: 227 ------SSIDSSIGAVSAAHYGSASILPISWAYIRRLESHYKTL---------------- 264
I + + + L + + +
Sbjct: 302 TLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLL 361
Query: 265 ----FRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
R +EF + + + + + L +
Sbjct: 362 EVPGVRPFTPKPFFNEFALAL-------PKDPEAVRRALAER 396
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 118 bits (295), Expect = 6e-31
Identities = 28/304 (9%), Positives = 75/304 (24%), Gaps = 20/304 (6%)
Query: 15 PQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYH 74
++ + P + ++ L ++ ++ G ++ +
Sbjct: 77 GDISAVQPKAAG--SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR 134
Query: 75 QAQDAHHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKNKE 131
+ + P + S AG +E V + D +E K+++
Sbjct: 135 HKR--PKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP 192
Query: 132 T-LSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY-----G 185
+ CL T + + ++ + + ++ A
Sbjct: 193 EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR 252
Query: 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL-------PVHPLSSIDSSIGAVSA 238
D +L K F +P GG ++ P + S+G
Sbjct: 253 IDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGY 312
Query: 239 AHYGSASILPISWAYIRRLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKR 298
+ + + R ++ + ++ + +
Sbjct: 313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSM 372
Query: 299 LMDY 302
L
Sbjct: 373 LFTR 376
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 118 bits (295), Expect = 7e-31
Identities = 41/311 (13%), Positives = 86/311 (27%), Gaps = 31/311 (9%)
Query: 15 PQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCY 73
L + P A L ++ + G + P S L A
Sbjct: 96 GNLVDPQPKASG--ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSA---- 149
Query: 74 HQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG---TIDFSDLETKVKKNK 130
A+ + NV + P ++H + + GM++ V DG + D+E +KK
Sbjct: 150 --ARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEI 207
Query: 131 ET--LSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR----PGDY 184
E C++ T ++I ++ ++ + ++GA Y
Sbjct: 208 ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY 267
Query: 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV--HPLSSIDSSIGAVSAAHYG 242
D + K P GGG ++ P +++ + +S
Sbjct: 268 RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKN 327
Query: 243 SASILPISWAYIRRL--------ESHYKTLFRSSRSGLVAHEFVIDVRDFK---KSANIE 291
++ + L + D + + +
Sbjct: 328 YLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVT 387
Query: 292 AVDIAKRLMDY 302
K+ +
Sbjct: 388 GPRGIKKTDHF 398
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 97.7 bits (242), Expect = 2e-23
Identities = 45/332 (13%), Positives = 89/332 (26%), Gaps = 58/332 (17%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D+A + +L+ E+ YD I + G E + Y Q + V
Sbjct: 68 DEAYAGSRNYYDLKDKAKELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGKAKNPVF- 125
Query: 87 IPVSAHGTNPASAQMAGMSVEPVSVRK----------DGTIDFSDLETKVKKNKETLSCL 136
I T A ++ G + K G D L+ + ++
Sbjct: 126 ISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVA 185
Query: 137 MITYPSTFG-----VFEENITDVCELIHEHGGQVYLDGANM--NAQVGLCRPGDYGS--- 186
+++ + V N+ +V E+ +HG V +D A NA R Y +
Sbjct: 186 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI 245
Query: 187 -----DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH---PLSSIDSSIGAVSA 238
D+ T G + ++ + F + G ++
Sbjct: 246 KEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 305
Query: 239 AHYGSASIL------PISWAYIRRLESHYKTLFRSSRSGLV-----------AHEFVIDV 281
+ Y + R + + + V +
Sbjct: 306 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQI 365
Query: 282 RDFK-----------KSANIEAVDIAKRLMDY 302
+ + + AV+I L+
Sbjct: 366 PGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 78.0 bits (191), Expect = 8e-17
Identities = 40/334 (11%), Positives = 80/334 (23%), Gaps = 59/334 (17%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D+A + L + I GY + G E + + + + R+ +
Sbjct: 67 DEAFSGSRSYYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMV 125
Query: 87 IPVSA-HGTNPASAQMAGMSVEPVS----------VRKDGTIDFSDLETKVKKNKETLSC 135
+ T +Q+ G +V V G D LE +++
Sbjct: 126 AFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP 185
Query: 136 LMITYPSTFG-----VFEENITDVCELIHEHGGQVYLDGANMNAQVGL----------CR 180
++ ++ V N+ + + ++ V +D A
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL------APFLPVHPLSSIDSSIG 234
+ P G + +K + G
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG 305
Query: 235 AVSAAHYGSASILPISW-------------AYIRRLESHYKTLFRSSRSGLV--AHEFVI 279
A A L + LE ++ A + +
Sbjct: 306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLP 365
Query: 280 DVRDFK-----------KSANIEAVDIAKRLMDY 302
+ + K A I AV+I L+
Sbjct: 366 HIPADQFPAQALACELYKVAGIRAVEIGSFLLGR 399
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 63.7 bits (154), Expect = 5e-12
Identities = 26/275 (9%), Positives = 61/275 (22%), Gaps = 31/275 (11%)
Query: 58 SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-DGT 116
+ G A + +A L+ A+ + + + +R
Sbjct: 127 ACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLF 186
Query: 117 IDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELI---HEHGGQVYLDGANMN 173
+D + +N + + F + + D + +++D A+
Sbjct: 187 MDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG 246
Query: 174 AQVGLCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227
P + HK P G G F +
Sbjct: 247 FLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGG 306
Query: 228 SIDSSIGAVSAAHYGSAS-------------------ILPISWAYIRRLESHYK-TLFRS 267
I + S + ++ + +
Sbjct: 307 QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICT 366
Query: 268 SRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
R ++D + D+++RL
Sbjct: 367 GRPDEGIPAVCFKLKD-GEDPGYTLYDLSERLRLR 400
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 56.8 bits (136), Expect = 8e-10
Identities = 25/194 (12%), Positives = 64/194 (32%), Gaps = 11/194 (5%)
Query: 79 AHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKE---TLSC 135
+ V AH + + + G+ ++ + + S L+ ++++K
Sbjct: 179 VLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFF 238
Query: 136 LMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP-----GDYGSDVSH 190
++ T +T +N+ +V + HE +++D A + G +D +
Sbjct: 239 VVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFN 298
Query: 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPIS 250
N HK + + ++ L + P+ S G+ Y +
Sbjct: 299 FNPHKWLLVNFDCSAMWVKR---RTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 251 WAYIRRLESHYKTL 264
++ ++
Sbjct: 356 RFRSLKMWFVFRMY 369
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 37/275 (13%), Positives = 71/275 (25%), Gaps = 29/275 (10%)
Query: 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH-HRNVCLIPVSAHGTNP 96
LE + E+ G+ I + G E + Q + + +G
Sbjct: 79 HLEKTVKELFGFKHI-VPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATF 137
Query: 97 ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKE-----TLSCLMITYPSTFGVFEENI 151
+++ G ID + L T +K+ + + V N+
Sbjct: 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANM 197
Query: 152 TDVCELIHEHGGQVYLDGANM--NAQVGLCRPGDYGS--------------DVSHLNLHK 195
V E+ +G +++ D NA + Y + D ++ K
Sbjct: 198 RAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257
Query: 196 TFCIPHGGGGPGMGPI------GVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPI 249
+ GG + L+ D A+ +
Sbjct: 258 DCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEH 317
Query: 250 SWAYIRRLESHYKTLFRSSRSGLVAHEFVIDVRDF 284
+R L + H +D R F
Sbjct: 318 RVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRF 352
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 302 | |||
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 100.0 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.96 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.96 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.95 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.95 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.92 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.89 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.87 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.86 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.83 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.82 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.81 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.81 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.81 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.8 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.79 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.78 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.78 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.75 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.73 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.72 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.71 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.71 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.7 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.7 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.7 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.7 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.7 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.69 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.68 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.68 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.66 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.66 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.65 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.65 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.65 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.64 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.64 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.63 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.63 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.63 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.62 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.61 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.6 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.6 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.6 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.6 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.59 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.58 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.58 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.58 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.57 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.56 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.55 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.54 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.54 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.53 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.53 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.53 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.53 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.53 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.52 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.52 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.51 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.49 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.48 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.47 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.46 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.43 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.35 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.23 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.22 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.21 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.12 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.12 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.05 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.05 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.03 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.01 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.94 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.85 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.83 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.75 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.68 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.63 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 80.56 |
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-53 Score=402.28 Aligned_cols=272 Identities=19% Similarity=0.255 Sum_probs=234.3
Q ss_pred CCccccccccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcC
Q psy7357 1 MKLNATTEMIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDA 79 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~ 79 (302)
|||+|. ++++++|+|| |+|||||| |++||++|+++|+|+++|+++|||.+++++++|++|+.++++.++.+
T Consensus 76 ~~~p~~-i~~~~~~~~~~t~ytPyqp-E~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~------ 147 (437)
T d1wyua1 76 HHVPPV-VQALAARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE------ 147 (437)
T ss_dssp CCCCHH-HHHHHTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH------
T ss_pred ceeCHH-HHHHHhChhhhhhCCCcch-HHHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhh------
Confidence 777665 4789999999 99999999 89999999999999999999999999999999999987777776665
Q ss_pred CCCCEEEEcCCCCcccH----HHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNP----ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~----~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
.++++++++...|+.+. .+++..|++++.+|.++++. |.++ ++ +++++||+++||++|.++ |+++|+
T Consensus 148 ~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~-~~~~----~~---~~~Aavmi~~Pnt~G~~e-d~~~i~ 218 (437)
T d1wyua1 148 TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT-PLPE----VG---EEVGAVVVQNPNFLGALE-DLGPFA 218 (437)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC-CCCC----CC---TTEEEEEEESSCTTSBCC-CHHHHH
T ss_pred hcccccccccccChHHhhhhhhhcccceeeEEeeecccccc-hhhh----hc---cceeEEEEcccccccccc-chHHHH
Confidence 35677899998887653 46778999999999865443 3222 34 899999999999999999 899999
Q ss_pred HHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-------
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------- 228 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------- 228 (302)
+++|+.|+++++| +++++++++.+|+++|+||++++ ||+|+.|+++|||+.|++++++++.+++|||++|+
T Consensus 219 ~~~h~~G~l~~~~-ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~ 296 (437)
T d1wyua1 219 EAAHGAGALFVAV-ADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGR 296 (437)
T ss_dssp HHHHHTTCEEEEE-CCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSC
T ss_pred HHhhhccceEEee-echhhhhccccccccccceEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCc
Confidence 9999999988655 67899999999999999999999 99999999999999999999999999999999974
Q ss_pred ------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh--cccccccccCCCc
Q psy7357 229 ------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE--SHYKTLFRSSRSG 271 (302)
Q Consensus 229 ------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~--~g~~~~~~~~~~~ 271 (302)
+||.+.+++|++|+.+. + ++++. +|++ +|. .|+++++++++
T Consensus 297 ~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~-- 374 (437)
T d1wyua1 297 RGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPF-- 374 (437)
T ss_dssp EEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSB--
T ss_pred ccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCe--
Confidence 67888999999999853 3 33333 6776 786 58998877777
Q ss_pred ceeEEEEEEeccccccCCCCHHHHHHHhhcC
Q psy7357 272 LVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302 (302)
Q Consensus 272 ~~~he~~~~~~~~~~~~g~~~~~~~~~l~~~ 302 (302)
||||+++++ ++++|++|+|+|+
T Consensus 375 --f~ef~v~~~-------~~~~~i~k~L~d~ 396 (437)
T d1wyua1 375 --FNEFALALP-------KDPEAVRRALAER 396 (437)
T ss_dssp --CSEEEEECS-------SCHHHHHHHHHHT
T ss_pred --eeEEEEECC-------CCHHHHHHHHHhC
Confidence 999999876 7899999999986
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.2e-52 Score=398.09 Aligned_cols=288 Identities=39% Similarity=0.702 Sum_probs=244.4
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||++++.++++ ||+||||||.|+|||++|+++|+|+++|+|+|||.+|+++++|++|+..+++.++.+.+.++..
T Consensus 75 ~hy~P~v~~~~~~~--~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~ 152 (471)
T d1wyub1 75 MKYNPKLHEEAARL--FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEG 152 (471)
T ss_dssp CCCCCHHHHHHHHT--TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CccCcchhhhHHHH--HhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccc
Confidence 79999999999863 6999999977999999999999999999999999999999999977544444444455444433
Q ss_pred CCC-EEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHH
Q psy7357 81 HRN-VCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIH 159 (302)
Q Consensus 81 ~~d-~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~ 159 (302)
... .++++...+..+.......+.+++.++.+..+..|.+.+++..+ ++++++++++||++|.++++++++++++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~v~v~~p~~~g~~e~~~~~~~~~~h 229 (471)
T d1wyub1 153 RTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFERRILEISRLCK 229 (471)
T ss_dssp TTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCTTHHHHHHHHH
T ss_pred cccccccCCcccccceeeeeecccceeecccccccccccchhhhhhhh---ccccceeeccCCCcccccchhhhhHHHHH
Confidence 333 34444444444556677888999999988888999999999887 88999999999999999767999999999
Q ss_pred HhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-----------
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS----------- 228 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~----------- 228 (302)
++|+.+++|.++..+..++.+|+.+++|+++.+.||+|+.|+++|||++|++++++++.++||||++++
T Consensus 230 ~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~R 309 (471)
T d1wyub1 230 EAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDR 309 (471)
T ss_dssp HHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCC
T ss_pred hccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCC
Confidence 999999999988777777778888999999888899999999999999999999999999999999964
Q ss_pred ----------CCCcchhhhHHHHhhHh-------hHHHHH---HHHH-HHh-cccccccccCCCcceeEEEEEEeccccc
Q psy7357 229 ----------IDSSIGAVSAAHYGSAS-------ILPISW---AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKK 286 (302)
Q Consensus 229 ----------~~~~l~~~~a~~~~~~~-------~~~~~~---~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~ 286 (302)
+||.|++++|++|++++ +++.++ +|++ +|+ .|++++|++++ ||||+++++
T Consensus 310 EqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~f----f~EFvv~~~---- 381 (471)
T d1wyub1 310 PKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPS----MHEFVAQPP---- 381 (471)
T ss_dssp TTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSC----CSCEEEBCS----
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCcce----eeEEeecCC----
Confidence 78999999999999975 344443 7888 787 79999998888 999999887
Q ss_pred cCCCCHHHHHHHhhcC
Q psy7357 287 SANIEAVDIAKRLMDY 302 (302)
Q Consensus 287 ~~g~~~~~~~~~l~~~ 302 (302)
.|++++||+|+|+|+
T Consensus 382 -~~~~~~~i~k~L~~~ 396 (471)
T d1wyub1 382 -EGFRALDLAKGLLEL 396 (471)
T ss_dssp -TTCCHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHc
Confidence 478999999999975
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=5.7e-30 Score=236.61 Aligned_cols=257 Identities=18% Similarity=0.205 Sum_probs=195.4
Q ss_pred CC-ccCCCCCCCcccccHHHHHHHHH----HHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q psy7357 16 QL-TNMHPFIPQDQARGYEQLIGELE----TDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS 90 (302)
Q Consensus 16 ~f-t~~~py~p~e~sqG~l~~~~e~~----~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~ 90 (302)
.| ..|.---|.+.+.|-.+.+++++ ++.+++||++.+++++.||+.|++++++|+. ++||+|+..+.
T Consensus 46 ~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all--------~pGD~im~l~l 117 (405)
T d1kl1a_ 46 VLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL--------EHGDTVLGMNL 117 (405)
T ss_dssp GGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECG
T ss_pred cccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhc--------CCCCEEEEeec
Confidence 55 44544344455555458888877 5779999999999999999999999999886 89999999998
Q ss_pred CCcccHH-----HHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCE
Q psy7357 91 AHGTNPA-----SAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQ 164 (302)
Q Consensus 91 ~hg~~~~-----~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~l 164 (302)
.+|.|.. ......++.+.+|+++ ++.+|+|++++.+++++|+ +|++.. +.+-... |++++++||++.|++
T Consensus 118 ~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPk--lIi~G~-S~y~r~~-d~~~~reIad~vga~ 193 (405)
T d1kl1a_ 118 SHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPK--LIVAAA-SAYPRII-DFAKFREIADEVGAY 193 (405)
T ss_dssp GGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCS--EEEECC-SSCCSCC-CHHHHHHHHHHHTCE
T ss_pred ccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcc--eEEecc-ccccccc-ChHHHHHHHhhhCCE
Confidence 8887753 2334568999999986 5789999999999987665 355554 4434444 899999999999999
Q ss_pred EEEecCCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC--CCCcchhhhHH
Q psy7357 165 VYLDGANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS--IDSSIGAVSAA 239 (302)
Q Consensus 165 livD~a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~--~~~~l~~~~a~ 239 (302)
+++|.+|..++ +.+++|-++ +||+++++||||. ||+.|+|.+++++.+++...+++. ++..++.++ +
T Consensus 194 l~~D~aH~~GLIa~g~~~~P~~~-aDvvt~tThKtlr------GPrgg~I~~~~~~~~~i~~avfPg~qggp~~~~iA-a 265 (405)
T d1kl1a_ 194 LMVDMAHIAGLVAAGLHPNPVPY-AHFVTTTTHKTLR------GPRGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIA-A 265 (405)
T ss_dssp EEEECTTTHHHHHTTSSCCSTTT-CSEEEEESSSTTC------CCSCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHH-H
T ss_pred EecchhhHhhhhhhhhcCChhhh-hhheecccccccc------CCCCceEEecchhHHHHHhhhCcccccCcchhHHH-H
Confidence 99999996444 445778765 8999999999998 899999999988877774444432 455666666 4
Q ss_pred HHhhHhh-HH-HHHHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 240 HYGSASI-LP-ISWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 240 ~~~~~~~-~~-~~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
...++.- +. ....|++ .|. .|++++.+|++ .|++++|+++ .|++.+++.++|-
T Consensus 266 ~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd----~H~vlvdl~~----~~~~g~~ae~~Le 332 (405)
T d1kl1a_ 266 KAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTD----NHLLLVDLRP----QQLTGKTAEKVLD 332 (405)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS----SSEEEEECGG----GTCCHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCc----cceeeccccc----cCCcHHHHHHHHH
Confidence 6666652 22 2236766 454 69999976555 9999999985 3688888887763
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-29 Score=235.63 Aligned_cols=258 Identities=21% Similarity=0.253 Sum_probs=193.8
Q ss_pred cCC-ccCCCCCCCcccccHHHHHHHHH----HHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC
Q psy7357 15 PQL-TNMHPFIPQDQARGYEQLIGELE----TDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV 89 (302)
Q Consensus 15 ~~f-t~~~py~p~e~sqG~l~~~~e~~----~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~ 89 (302)
+.| ..|.---|.+.+.|-.+.+++++ ++.+++||++.+++++.||+.|++++++|+. ++||+|+..+
T Consensus 48 S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All--------~pGD~Il~l~ 119 (416)
T d1dfoa_ 48 SQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL--------EPGDTVLGMN 119 (416)
T ss_dssp SGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEEC
T ss_pred CcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhc--------CCCCeeeecc
Confidence 355 44544333444444447777766 5779999999999999999999999999886 7999999999
Q ss_pred CCCcccHH-----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCE
Q psy7357 90 SAHGTNPA-----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQ 164 (302)
Q Consensus 90 ~~hg~~~~-----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~l 164 (302)
..||.|.. ......++.+.+++++++.+|+|++++.+.+++|+ +|++.. +.+.... |++++++||++.|++
T Consensus 120 l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPk--lIi~G~-S~y~r~~-d~~~~reiad~vga~ 195 (416)
T d1dfoa_ 120 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPK--MIIGGF-SAYSGVV-DWAKMREIADSIGAY 195 (416)
T ss_dssp TTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCS--EEEEEC-SSCCSCC-CHHHHHHHHHHTTCE
T ss_pred ccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccc--eEEecc-ccccccc-CHHHHHHHHHhcCce
Confidence 99998754 23345578999999888999999999999876665 466655 5445556 899999999999999
Q ss_pred EEEecCCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC---CCCCCCCCCcccC--CCCcchhh
Q psy7357 165 VYLDGANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS---HLAPFLPVHPLSS--IDSSIGAV 236 (302)
Q Consensus 165 livD~a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~---~l~~~lpg~~~~~--~~~~l~~~ 236 (302)
+++|.+|..++ +.+.+|-.+ +||+++++||||. ||+.|++.++. ++.+++...+++. ++..++.+
T Consensus 196 l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThKtlr------GPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~i 268 (416)
T d1dfoa_ 196 LFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHKTLA------GPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVI 268 (416)
T ss_dssp EEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSSTTC------CCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHH
T ss_pred EEcchhhhhcceeccccCCcccc-cceeeeehhhccc------CCCceEEEeccchHhHHHHHHhhhCcccccCccHHHH
Confidence 99999996444 445788776 6999999999998 89999999973 5555663333321 44455566
Q ss_pred hHHHHhhHhh-HHHH-HHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 237 SAAHYGSASI-LPIS-WAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 237 ~a~~~~~~~~-~~~~-~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
+ +...++.. .... ..|++ .|. .||+++.+|++ .|+++||+++ .|++++++.+.|-
T Consensus 269 a-a~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTd----nHlvlvdl~~----~~~~G~~a~~~Le 337 (416)
T d1dfoa_ 269 A-GKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTD----NHLFLVDLVD----KNLTGKEADAALG 337 (416)
T ss_dssp H-HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS----SSEEEEECGG----GTCCHHHHHHHHH
T ss_pred H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCC----CceeEEEecc----cCCCHHHHHHHHH
Confidence 5 46666652 2222 36665 455 69999987666 9999999985 3688998888774
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.95 E-value=1.1e-28 Score=231.45 Aligned_cols=255 Identities=16% Similarity=0.171 Sum_probs=170.2
Q ss_pred cCC-ccCCCCCCCcccccHHHHHHHHH----HHHHHHhCCCee----eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEE
Q psy7357 15 PQL-TNMHPFIPQDQARGYEQLIGELE----TDLCEITGYDKI----SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVC 85 (302)
Q Consensus 15 ~~f-t~~~py~p~e~sqG~l~~~~e~~----~~l~~l~g~~~~----~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~V 85 (302)
+.| ..|.--.|.+.+.|-.+.+++++ ++.+++|+++.+ |++|.||+.|++++++++. ++||+|
T Consensus 49 S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all--------~pgD~I 120 (463)
T d2a7va1 49 SCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRI 120 (463)
T ss_dssp SGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------CSCEEC
T ss_pred chhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc--------CCCceE
Confidence 355 44544444455555568888776 579999999975 8999999999989999886 799999
Q ss_pred EEcCCCCcccHHH--------HH--hCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 86 LIPVSAHGTNPAS--------AQ--MAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 86 lv~~~~hg~~~~~--------~~--~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
+..+..+|.|... .. ...++...+++++ ++.||++++++.+.+++|+ +|++.. +.+-... |++++
T Consensus 121 m~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPk--lIi~G~-S~y~r~~-d~~~~ 196 (463)
T d2a7va1 121 MGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPR--LIIAGT-SAYARLI-DYARM 196 (463)
T ss_dssp CC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCS--EEEECC-SSCCSCC-CHHHH
T ss_pred EeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCc--eEEecc-ccccccc-CHHHH
Confidence 9988887766421 11 2234667777774 6899999999999987665 355555 4444445 89999
Q ss_pred HHHHHHhCCEEEEecCCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC---------------C
Q psy7357 155 CELIHEHGGQVYLDGANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS---------------H 216 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~---------------~ 216 (302)
++||++.|+++++|.+|..++ +.+.+|-++ +|||++++||||. ||+.|+|.+++ +
T Consensus 197 reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~tTHKTlr------GPrgGiIl~~~~~~~~~~~~~~~~~~~ 269 (463)
T d2a7va1 197 REVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLR------GARSGLIFYRKGVKAVDPKTGREIPYT 269 (463)
T ss_dssp HHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGC------SCSCEEEEEECSEEEEETTTEEEEECC
T ss_pred HHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhchhhhhhc------CCCceEEEEcccccccccccCccchhH
Confidence 999999999999999996444 445778765 7999999999998 89999999997 3
Q ss_pred CCCCC-----CCCcccCCCCcchhhhHHHHhhHhh-HHH-HHHHHH-----------HHh-cccccccccCCCcceeEEE
Q psy7357 217 LAPFL-----PVHPLSSIDSSIGAVSAAHYGSASI-LPI-SWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEF 277 (302)
Q Consensus 217 l~~~l-----pg~~~~~~~~~l~~~~a~~~~~~~~-~~~-~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~ 277 (302)
+.+++ ||.+ ++..++.++ +...++.. .+. ...|++ .|. .|+++++++++ +|++
T Consensus 270 ~~~~i~~avFPg~q---ggph~h~iA-a~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTd----nHlv 341 (463)
T d2a7va1 270 FEDRINFAVFPSLQ---GGPHNHAIA-AVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTD----NHLV 341 (463)
T ss_dssp CHHHHHHHHTTTTC---CSCCHHHHH-HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS----SSEE
T ss_pred HHHHhhhhcCcccc---hhhhhhhHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCC----Ccee
Confidence 44444 4444 445555666 46666653 222 236766 454 69999986665 9999
Q ss_pred EEEeccccccCCCCHHHHHHHhh
Q psy7357 278 VIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 278 ~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
++|+++ .|+++++++++|-
T Consensus 342 lvdl~~----~~~~G~~ae~~Le 360 (463)
T d2a7va1 342 LVDLRP----KGLDGARAERVLE 360 (463)
T ss_dssp EEECTT----TTCCHHHHHHHHH
T ss_pred eeeccc----cCCCHHHHHHHHH
Confidence 999975 3689999888874
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.95 E-value=6e-28 Score=227.10 Aligned_cols=244 Identities=20% Similarity=0.198 Sum_probs=184.5
Q ss_pred CcccccHHHHHHHHHH----HHHHHhCCC----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 26 QDQARGYEQLIGELET----DLCEITGYD----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 26 ~e~sqG~l~~~~e~~~----~l~~l~g~~----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
.+.+.|-.+.+++++. +.+++||++ .+|++|.||+.|++++++|+. +++|+|+..+..+|.|..
T Consensus 65 g~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all--------~pgD~im~~~l~~GGHls 136 (470)
T d1rv3a_ 65 GQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--------EPHGRIMGLDLPDGGHLT 136 (470)
T ss_dssp TEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--------CTTCEEEEECGGGTCCGG
T ss_pred CccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc--------CCCCeEeeeccccCCccc
Confidence 3444444588888875 559999987 689999999999999999887 799999999888776643
Q ss_pred H----------HHhCCCEEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 98 S----------AQMAGMSVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 98 ~----------~~~~g~~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
. .....++...++++++ +.||+|++++.+.+++|+ +|++.. +.+-... |++++++||++.|++++
T Consensus 137 hg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPk--lIi~G~-S~y~r~~-d~~~~reIad~vga~l~ 212 (470)
T d1rv3a_ 137 HGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK--LIIAGT-SCYSRNL-DYGRLRKIADENGAYLM 212 (470)
T ss_dssp GCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCS--EEEECC-SSCCSCC-CHHHHHHHHHHTTCEEE
T ss_pred ccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcc--eEeech-hhccccC-CHHHHHHHHhccCCeEE
Confidence 2 2233478999999874 899999999999876665 455554 4444445 89999999999999999
Q ss_pred EecCCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC---------------CCCCC-----CC
Q psy7357 167 LDGANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH---------------LAPFL-----PV 223 (302)
Q Consensus 167 vD~a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~---------------l~~~l-----pg 223 (302)
+|.+|..++ +.+.+|-++ +|||++++||||. ||+.|+|.++++ +.+++ ||
T Consensus 213 ~D~aH~aGLIA~g~~~sPl~~-aDvvt~tTHKtlr------GPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg 285 (470)
T d1rv3a_ 213 ADMAHISGLVVAGVVPSPFEH-CHVVTTTTHKTLR------GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPG 285 (470)
T ss_dssp EECTTTHHHHHHTSSCCGGGT-CSEEEEESSGGGC------CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTT
T ss_pred ecchhhhhhccccccCChhhe-eeeeeeehhhhcc------CCcceEEEEccccccccccccchhHHHHHHHHhhhcCcc
Confidence 999996544 456788765 6999999999998 899999999864 33344 44
Q ss_pred CcccCCCCcchhhhHHHHhhHhh-HH-HHHHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCC
Q psy7357 224 HPLSSIDSSIGAVSAAHYGSASI-LP-ISWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSAN 289 (302)
Q Consensus 224 ~~~~~~~~~l~~~~a~~~~~~~~-~~-~~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g 289 (302)
.+ ++..++.++ ++..++.. +. ....|++ .|. .|++++.+|++ .|++++|+++ .|
T Consensus 286 ~q---ggph~~~IA-a~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~ggTd----nHlvlvdl~~----~g 353 (470)
T d1rv3a_ 286 LQ---GGPHNHAIA-GVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSD----NHLILVDLRS----KG 353 (470)
T ss_dssp TC---CSCCHHHHH-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS----SSEEEEEGGG----GT
T ss_pred cc---ccchhhHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceeccCCCC----CceEEEeecc----cC
Confidence 44 445555666 46666653 22 2236766 454 69999987666 9999999975 37
Q ss_pred CCHHHHHHHhh
Q psy7357 290 IEAVDIAKRLM 300 (302)
Q Consensus 290 ~~~~~~~~~l~ 300 (302)
+++.++.+.|-
T Consensus 354 ~~g~~ae~~Le 364 (470)
T d1rv3a_ 354 TDGGRAEKVLE 364 (470)
T ss_dssp CCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 89998888774
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=1.8e-24 Score=203.83 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=150.0
Q ss_pred cCCcCC-ccCCCCCCCcccccHHHHHHH--HHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEE
Q psy7357 12 CSFPQL-TNMHPFIPQDQARGYEQLIGE--LETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLI 87 (302)
Q Consensus 12 ~~~~~f-t~~~py~p~e~sqG~l~~~~e--~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv 87 (302)
....++ +.|+|||| +.+|++++...+ +..++++++|++.......+| +.++++++++.+.. .++++|++
T Consensus 89 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~------~~~~~vi~ 161 (434)
T d2z67a1 89 CHGIGRSGNLVDPQP-KASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK------YGSNVVIY 161 (434)
T ss_dssp TTCBSBTTBTTSCCT-TBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH------HCCCEEEE
T ss_pred ccccccccchhhhhh-hhhhhHHHHHHHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHh------hcCceEEE
Confidence 344556 78999999 888888765544 557899999998765554444 45565677776643 36789999
Q ss_pred cCCCCcccHHHHHhCCCEEEEeec---CCCCCCCHHHHHHHHhcc--CCCeEEEEEecCC-CceeccccHHHHHHHHHHh
Q psy7357 88 PVSAHGTNPASAQMAGMSVEPVSV---RKDGTIDFSDLETKVKKN--KETLSCLMITYPS-TFGVFEENITDVCELIHEH 161 (302)
Q Consensus 88 ~~~~hg~~~~~~~~~g~~v~~i~~---~~~g~iD~~~l~~~i~~~--~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~ 161 (302)
|+..|++....+...|++++.++. ++++.+|+++|+++|+++ .+++.+|++++|| .+|.+. |+++|+++||++
T Consensus 162 s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~-~l~~i~~~~~~~ 240 (434)
T d2z67a1 162 PYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD-DIVEIAKICENY 240 (434)
T ss_dssp ECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC-CHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCcccc-CHHHHHHHHHHh
Confidence 999999888888899999888864 345789999999999753 2478899999997 578888 899999999999
Q ss_pred CCEEEEecCCccccc----ccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 162 GGQVYLDGANMNAQV----GLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~----~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
|+++++|+|+..... ....++..++|++++++||+|+.| ++.|++.+++ .+.+++
T Consensus 241 ~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~-----~g~~~~~~~~~~~~~~~ 300 (434)
T d2z67a1 241 DIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-----IGGGLVYSTDAEFIKEI 300 (434)
T ss_dssp TCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-----SSCEEEEESCHHHHHHH
T ss_pred CCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccC-----CCccccccCcHHHHHHH
Confidence 999999998743221 123457789999999999999854 4567777774 344333
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=5.8e-23 Score=187.74 Aligned_cols=171 Identities=17% Similarity=0.310 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
+.+.+++.+++++|.+.+.+ +.+|++|+.+++.++. ++||+||++++.|.++...++..|++++.+|.++
T Consensus 48 l~~~~~~~~A~~~g~e~~~~-t~g~t~a~~~~~~al~--------~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~ 118 (364)
T d2e7ja1 48 IHDFIHNQLPKFLGCDVARV-TNGAREAKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY 118 (364)
T ss_dssp HHHHHHTHHHHHTTSSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT
T ss_pred HHHHHHHHHHHHhCcCEEEE-ECcHHHHHHHHHHHHh--------CCCcEEEeecccccccchHHHhccceEEEeeeccc
Confidence 56778999999999987654 5667787766666654 6899999999999877777889999999999864
Q ss_pred -CCCCCHHHHHHHHhccC--CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 114 -DGTIDFSDLETKVKKNK--ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~--~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
++.+|+++++++++++. .++++|++++| |++|.+. |+++|+++|+++|+++++|+++..+.... +..++++|++
T Consensus 119 ~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~-~l~~I~~ia~~~~i~livD~a~~~g~~~~-~~~~~g~D~~ 196 (364)
T d2e7ja1 119 PDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP-DVKKIAKVCSEYDVPLLVNGAYAIGRMPV-SLKEIGADFI 196 (364)
T ss_dssp TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTTBTTBCC-CHHHHTCSEE
T ss_pred cccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceee-cchhheeccccccchhhccccchhhhhhh-ccccccccee
Confidence 56899999999997542 45788999998 5899999 79999999999999999999986554432 4456789999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++++||+|+.| .++|++++++++.+.+
T Consensus 197 ~~S~~K~~~~~-----g~~g~l~~~~~~~~~~ 223 (364)
T d2e7ja1 197 VGSGHKSMAAS-----GPIGVMGMKEEWAEIV 223 (364)
T ss_dssp EEEHHHHSSCC-----SSCEEEEECTTTTTTT
T ss_pred eeccccccCCC-----CCEEEEEECHHHHHHH
Confidence 99999999743 2689999998877765
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3.4e-21 Score=178.54 Aligned_cols=182 Identities=15% Similarity=0.250 Sum_probs=146.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v 106 (302)
-..+.++++|+.+++++|++..++..++|+ ++...++.++.... .+++|+|++++..|+++.. .++..|+++
T Consensus 45 ~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~----~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v 120 (391)
T d1p3wa_ 45 QAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY----QKKGKHIITSKTEHKAVLDTCRQLEREGFEV 120 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH----GGGCCEEEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhh----cCCCCEEEEeccccchHHHHHHHHHHcCCEE
Confidence 345788999999999999998766655555 44433444333211 1578999999999987644 345679999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|.++++.+|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +...++
T Consensus 121 ~~v~~~~~~~~d~~~~~~~i~---~~T~lv~is~~~n~tG~~~-~~~~I~~~~~~~~~~~ivD~~~~~g~~~~-d~~~~~ 195 (391)
T d1p3wa_ 121 TYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQ-DIAAIGEMCRARGIIYHVDATQSVGKLPI-DLSQLK 195 (391)
T ss_dssp EEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTBTTBCC-CTTTSC
T ss_pred EEeCCCCCCeEcHHHHHHhCC---CCcEEEEEECCCCCCeeEC-CHHHHHHHhccCCcEEEEeeccccCCccc-cchhcc
Confidence 999998889999999999998 89999999998 4899999 89999999999999999999987666554 556788
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~ 227 (302)
+|+++++.||+++ +++.|+++++++....++....|
T Consensus 196 ~D~~~~s~~k~~g------~~g~g~~~~~~~~~~~~~~~~~g 231 (391)
T d1p3wa_ 196 VDLMSFSGHKIYG------PKGIGALYVRRKPRVRIEAQMHG 231 (391)
T ss_dssp CSEEEEESTTTTS------CSSCEEEEECBTTBCCCCCSSCS
T ss_pred ccccccccccccC------CCceEEEEEecchhcccCCcccC
Confidence 9999999999863 46789999999888777765554
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.8e-20 Score=175.03 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=140.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe-eeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDK-ISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~-~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g 103 (302)
+-..+.+++.|+.+++++|++. .++ ...+++++....+.++... . ..++++|++++.+|+++.. .++..|
T Consensus 62 ~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~---~-~~~g~~il~~~~e~~s~~~~~~~~a~~~g 137 (405)
T d1jf9a_ 62 AQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNS---N-VRAGDNIIISQMEHHANIVPWQMLCARVG 137 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHH---H-CCTTCEEEEETTCCGGGTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhccccc---c-cCCCCEEEEEeCcccchHHHHHHHHHHcC
Confidence 3445788999999999999753 344 3444455442333322211 1 2678999999999988743 346779
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++++.+|++++|.+|+++++++++ ++|++|++++. |.+|.+. |+++|+++||++|+++++|++|..+...+ +..
T Consensus 138 ~~v~~~~~~~~g~~~~~~~~~~i~---~~t~lv~~~~v~~~tG~~~-pi~~i~~~~~~~g~~~~vD~~q~~g~~~i-d~~ 212 (405)
T d1jf9a_ 138 AELRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGTEN-PLAEMITLAHQHGAKVLVDGAQAVMHHPV-DVQ 212 (405)
T ss_dssp CEEEEECBCTTSCBCGGGHHHHCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHH
T ss_pred cEEEEECCCCCCcCCHHHHHHhcc---CCcEEEEEecCCCcccccC-chHHhhhHHHHcCCeeecccceecccccc-chh
Confidence 999999999999999999999998 89999999886 5799999 79999999999999999999987665543 455
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++++|++++++|||++ | +|+|++++++++.+.++.
T Consensus 213 ~~~~D~~~~s~hK~~G-p-----~G~g~l~v~~~~~~~~~~ 247 (405)
T d1jf9a_ 213 ALDCDFYVFSGHKLYG-P-----TGIGILYVKEALLQEMPP 247 (405)
T ss_dssp HHTCSEEEEEGGGTTS-C-----SSCEEEEECHHHHTTCCC
T ss_pred hcCCceeecccccccc-C-----CCceeeeechhhhcccCc
Confidence 7899999999999863 3 579999999877666554
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=2.5e-20 Score=175.57 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=135.1
Q ss_pred ccCCCCCCCcccccHH--HHHHHHHHHHHHHhCCCee--eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC
Q psy7357 18 TNMHPFIPQDQARGYE--QLIGELETDLCEITGYDKI--SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH 92 (302)
Q Consensus 18 t~~~py~p~e~sqG~l--~~~~e~~~~l~~l~g~~~~--~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h 92 (302)
.+++|+|| +.++++. ++..++.+++++++|++.. .+...+|+ .++++++++++.+ . .++++||+|...|
T Consensus 77 ~~~~~~~~-~~~~~~~~~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~----~-~~~~~vi~~~~~H 150 (445)
T d3bc8a1 77 GDISAVQP-KAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----R-PKAKYIIWPRIDQ 150 (445)
T ss_dssp ------CC-SBHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----C-TTCCEEEEECCCC
T ss_pred cchhhhhh-hhccchHHHHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh----C-CCCCEEEEcCccc
Confidence 55678888 7777654 4555677999999999752 22333333 3444555555432 2 4678999999999
Q ss_pred cccHHHHHhCCCEEEEeec---CCCCCCCHHHHHHHHhccC-CCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEE
Q psy7357 93 GTNPASAQMAGMSVEPVSV---RKDGTIDFSDLETKVKKNK-ETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 93 g~~~~~~~~~g~~v~~i~~---~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~lliv 167 (302)
.+....+...|++++.|+. ++++.+|+++|+++|++.. +++.+|++++|+ ++|.++ |+++|+++||++|+++|+
T Consensus 151 ~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~-~~~~i~~~~~~~~~~l~v 229 (445)
T d3bc8a1 151 KSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD-RLEELAVICANYDIPHVV 229 (445)
T ss_dssp HHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeeh-hHHHHHHHHHHhCCcEEE
Confidence 9888888999999888853 4568999999999997542 468999999986 689999 899999999999999999
Q ss_pred ecCCcccccccCCC----Cc-cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 168 DGANMNAQVGLCRP----GD-YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 168 D~a~~~~~~~~~~p----~~-~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
|+|+.........+ .. .++|++++++||+|+.|. +.|++++++ .+.+.+
T Consensus 230 D~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~-----g~~~l~~~~~~~~~~~ 284 (445)
T d3bc8a1 230 NNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV-----GGAIIAGFNEPFIQDI 284 (445)
T ss_dssp ECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCS-----SCEEEEESCHHHHHHH
T ss_pred EccchhhhhhccccchhccCcCCcceEEecCccccccCC-----CCceeeeCChHHHHHH
Confidence 99975433221111 11 258999999999998552 457777764 333333
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.82 E-value=3.7e-19 Score=166.26 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=138.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe-eeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDK-ISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~-~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g 103 (302)
+-..+.+++.|+.+++++|++. ..+.. .+++.+......++... ..++|++|++++..|++... .++..|
T Consensus 62 ~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~----~~~~g~~il~s~~e~~s~~~~~~~~~~~~g 137 (408)
T d1t3ia_ 62 VRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMN----NLKAGDEIITTVMEHHSNLVPWQMVAAKTG 137 (408)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHH----HCCTTCEEEEETTCCGGGTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhcccc----ccCCCCEEEeecccchhhhhhhhhhhhccC
Confidence 3445788999999999999974 44443 33444431222221111 12578999999999987743 345679
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
+++..+|.+.++..|+++++++++ ++|++|.+++- |.+|.+. |+++|+++||++|+++++|++|..+...+ +..
T Consensus 138 ~~v~~~~~~~~~~~~~~~l~~~~~---~~t~lv~i~~~~~~tG~~~-p~~~i~~~~~~~g~~~ivDa~q~~g~~~i-d~~ 212 (408)
T d1t3ia_ 138 AVLKFVQLDEQESFDLEHFKTLLS---EKTKLVTVVHISNTLGCVN-PAEEIAQLAHQAGAKVLVDACQSAPHYPL-DVQ 212 (408)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHH
T ss_pred ceEeeeeccccccccHHHhhhccC---CCceEEEEecccccccccC-cHHHHhhhhhccCceeeeccceecccccc-ccc
Confidence 999999998889999999999998 89999999875 5889999 79999999999999999999997776654 456
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++++|++++++||+++ ++|+|+++++++..+++|-.
T Consensus 213 ~~~~D~~~~s~hK~~g------p~G~g~l~v~~~~~~~~~p~ 248 (408)
T d1t3ia_ 213 LIDCDWLVASGHKMCA------PTGIGFLYGKEEILEAMPPF 248 (408)
T ss_dssp HHTCSEEEEEGGGTTS------CTTCEEEEECHHHHHHSCCC
T ss_pred ccCCceEEeccccccC------CCCccccccchhhhhcCCce
Confidence 7899999999999853 35899999998766555533
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.5e-18 Score=164.30 Aligned_cols=264 Identities=12% Similarity=0.037 Sum_probs=176.6
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee------eEeeCchHHHHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCCcccH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI------SFQPNSGAQGEYAGLRAIQCYHQA----QDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~------~~~~~~Ga~a~~a~l~a~~~~~~~----~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+.+..+.++-.++..++++|+|++.. -..+.+|++|++.+++++|..+.. .|......++++...|.+..
T Consensus 86 ~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~ 165 (450)
T d1pmma_ 86 EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWH 165 (450)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHH
Confidence 55677888889999999999998531 345666777776777776653321 22223345788888888888
Q ss_pred HHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHH------HHhCCEEEEe
Q psy7357 97 ASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELI------HEHGGQVYLD 168 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia------~~~g~llivD 168 (302)
..++..|++++.||+++ ++.+|+++|+++++ ++|.+|+.+.++ .+|.++ |+++|++++ +++|+++|||
T Consensus 166 Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~---~~t~~Vv~t~gtt~tG~~d-pv~~i~~i~~~~~~a~~~~i~lHVD 241 (450)
T d1pmma_ 166 KFARYWDVELREIPMRPGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE-FPQPLHDALDKFQADTGIDIDMHID 241 (450)
T ss_dssp HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC-CHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred HHHHHcCCCceEeeecCCCCcCcHHHHHHHhh---hCceEEEeeeeeccCCCcc-ccchhhHHHHHHHHHhccCcEEEee
Confidence 88999999999999986 58999999999998 889999988875 799999 798888775 5689999999
Q ss_pred cCCcccccccCCC------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC-CCCCC-CC---CcccC-----CC--
Q psy7357 169 GANMNAQVGLCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH-LAPFL-PV---HPLSS-----ID-- 230 (302)
Q Consensus 169 ~a~~~~~~~~~~p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~-l~~~l-pg---~~~~~-----~~-- 230 (302)
+|+..+...+..+ +..++|.++.++||++..| +++|+++++++ ..+.. .. .+.+. -+
T Consensus 242 AA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~s 316 (450)
T d1pmma_ 242 AASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAP-----LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 316 (450)
T ss_dssp CTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCC-----SSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCS
T ss_pred hhhccceeeeechhhhhhhcccceeEeecChhhccCCC-----CCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCc
Confidence 9974333322122 2347999999999998755 47899999853 32221 10 01110 01
Q ss_pred CcchhhhHHHHhhHh-hHHHHH-----------HHHH-HHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHHH
Q psy7357 231 SSIGAVSAAHYGSAS-ILPISW-----------AYIR-RLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDI 295 (302)
Q Consensus 231 ~~l~~~~a~~~~~~~-~~~~~~-----------~y~~-~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~ 295 (302)
..-..+. ..|..+. +...++ .|+. +|+ ++++++.++.. .+..+.+..++++. ...+++..++
T Consensus 317 r~~~~~~-~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p-~~~l~~V~Fr~~~~-~~~~~~~~~l 393 (450)
T d1pmma_ 317 RPAGQVI-AQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP-DEGIPAVCFKLKDG-EDPGYTLYDL 393 (450)
T ss_dssp CBSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCT-TTBSSEEEEEECTT-CCCSSCHHHH
T ss_pred cchHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCC-CCceEEEEEecCCc-ccCCCCHHHH
Confidence 1111222 2344332 111111 3444 565 47888765432 34467787777652 2347899999
Q ss_pred HHHhhcC
Q psy7357 296 AKRLMDY 302 (302)
Q Consensus 296 ~~~l~~~ 302 (302)
+++|.++
T Consensus 394 ~~~L~~~ 400 (450)
T d1pmma_ 394 SERLRLR 400 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 9999763
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.1e-19 Score=165.82 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=134.3
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHHhCC
Q psy7357 28 QARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQMAG 103 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~~~g 103 (302)
.++.+.++++++++.+++++|.+. ..+.+++|+.+..+++..+. .+++++++....|.+... .+...+
T Consensus 46 Rs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (388)
T d1h0ca_ 46 MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--------EPGDSFLVGANGIWGQRAVDIGERIG 117 (388)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CSSCCEEECBSSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh--------ccCCceeeecccceeeeecccccccc
Confidence 467788999999999999999964 34555667777656665543 678888888777655433 345667
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
..++.++.++.+.+|.+++++.+.+ +++++|++++. |.+|+++ |+++|+++||++|+++++|+++..+...+ +..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~n~tG~i~-pi~~i~~~~~~~g~~~~vD~~qs~g~~~~-d~~ 193 (388)
T d1h0ca_ 118 ARVHPMTKDPGGHYTLQEVEEGLAQ--HKPVLLFLTHGESSTGVLQ-PLDGFGELCHRYKCLLLVDSVASLGGTPL-YMD 193 (388)
T ss_dssp --CBCCBCCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHTTTCEEEEECTTTTTTSCC-CTT
T ss_pred ccccccccCCccccchHHHHHHhcc--CCcceEEEeeeeecccccc-CHHHHHHHhhcccccceeccccccccccc-ccc
Confidence 7888888877788999999888875 45566666663 7899999 79999999999999999999987666544 567
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
++++|++++++||+++.| +++|+++.+++..+
T Consensus 194 ~~~~D~~~~s~~K~~~gp-----~g~~~~~~~~~~~~ 225 (388)
T d1h0ca_ 194 RQGIDILYSGSQKALNAP-----PGTSLISFSDKAKK 225 (388)
T ss_dssp TTTCSEEEEESSSTTCCC-----TTCEEEEECHHHHH
T ss_pred ccccceecccccccccCC-----CceEEEeecHHHHH
Confidence 889999999999999844 47788888865443
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=4.8e-18 Score=156.16 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=135.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~ 104 (302)
++-..+.+++.|+.+++++|++..++...+++ ++...++.++... . ..+++.|+++...|+++.. .++..|+
T Consensus 39 ~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~---~-~~~g~~v~~~~~~~~~~~~~~~~~~~~g~ 114 (376)
T d1eg5a_ 39 GIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAET---F-EKRKRTIITTPIEHKAVLETMKYLSMKGF 114 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHH---T-TTTCCEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhccccc---c-cccCcccccccccchhhHHHHHHHHhcCC
Confidence 44567788899999999999998766655554 4442333222211 1 2567788888777665543 3467799
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCC
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p 181 (302)
+++++|++++|.+|+++++++++ ++|++|++++++ .+|.+. |+++++++++.+ |+++++|++|..+...+ +.
T Consensus 115 ~v~~vp~~~~~~id~~~l~~~i~---~~t~lv~is~v~~~tG~~~-~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~-d~ 189 (376)
T d1eg5a_ 115 KVKYVPVDSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQ-PVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-SL 189 (376)
T ss_dssp EEEECCBCTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-CC
T ss_pred EEEEEcCCCCCeECHHHHHHhcC---CCceEEEEECCccccceee-eehhhhhhhhhcccCceeEEEeeeccccccc-cc
Confidence 99999999999999999999998 899999999985 899999 799999998665 89999999987766654 56
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.++++|++++++|||++ ++|.|+++++++.
T Consensus 190 ~~~~~D~~~~s~~K~~g------p~G~~~l~~~~~~ 219 (376)
T d1eg5a_ 190 EKLEVDYASFSAHKFHG------PKGVGITYIRKGV 219 (376)
T ss_dssp TTTCCSEEEEEGGGGTS------CTTCEEEEECTTS
T ss_pred cccCccceecccceeec------CCCceeEEeccCc
Confidence 67899999999999964 3678889988653
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.80 E-value=2.5e-19 Score=165.04 Aligned_cols=182 Identities=17% Similarity=0.150 Sum_probs=136.7
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHh
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQM 101 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~ 101 (302)
..++...+.++++|+.+++++|++..++..++| +++. .+++.++ ..+++++|++++..|+++.. .++.
T Consensus 43 ~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~---~~~~~~l----~~~~g~~i~~~~~~~~s~~~~~~~~~~~ 115 (381)
T d1elua_ 43 AANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC---DIVLWGL----DWHQGDEILLTDCEHPGIIAIVQAIAAR 115 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH---HHHHHHS----CCCTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHh---hhcchhh----hhcCCceEEEeccccceeeecccccccc
Confidence 345566678899999999999998765554445 4544 3333322 12688999999999886543 3456
Q ss_pred CCCEEEEeecCCCCCC--CHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHh----CCEEEEecCCccc
Q psy7357 102 AGMSVEPVSVRKDGTI--DFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEH----GGQVYLDGANMNA 174 (302)
Q Consensus 102 ~g~~v~~i~~~~~g~i--D~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~----g~llivD~a~~~~ 174 (302)
.|+++..+|.+.+... +.+.++++++ ++|++|+++++| ++|.+. |+++|.++||++ |+++++|+++..+
T Consensus 116 ~g~~~~~v~~~~~~~~~~~~~~l~~~i~---~~t~~v~i~~~~n~tG~~~-~~~~I~~l~~~~~~~~~~~~~vD~~~~~g 191 (381)
T d1elua_ 116 FGITYRFFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVL-PLAEIMAVCRRHQGNYPVRVLVDGAQSAG 191 (381)
T ss_dssp HCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHCCSSSCCEEEEECTTTBT
T ss_pred ccccccccccccccccchHHHHHHhhhc---ccccccccccccccccccc-hhhHHHHHHhhcccccccccccccccccc
Confidence 7999999998654332 3566666666 899999999985 799999 799999999985 6899999998655
Q ss_pred ccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 175 QVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 175 ~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
...+ ...++++|++++++||+|+.| +|+|++++++++.+.+....
T Consensus 192 ~~~~-~~~~~~~D~~~~s~~K~~~~p-----~G~g~l~~~~~~~~~~~p~~ 236 (381)
T d1elua_ 192 SLPL-DFSRLEVDYYAFTGHKWFAGP-----AGVGGLYIHGDCLGEINPTY 236 (381)
T ss_dssp TBCC-CTTTSCCSEEEEESSSTTCCC-----TTCEEEEECTTTGGGCCCCS
T ss_pred cccc-ccccccccccccccccccccc-----chhhHHHhhHHHHHhcCccc
Confidence 5443 456778999999999999854 57899999988877765433
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.79 E-value=3.2e-18 Score=158.68 Aligned_cols=184 Identities=15% Similarity=0.162 Sum_probs=137.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYDK--ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
++.|.| ++|..++++.+.+++.+..|.+. .++..++|+ ++...++.++. ++||.|++++|.|+.+.
T Consensus 60 ~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~Vlv~~P~y~~~~ 128 (388)
T d1j32a_ 60 KTRYGP---AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI--------EPGDEVIIPAPFWVSYP 128 (388)
T ss_dssp CCSCCC---TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHH
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh--------CCCCEEEEcCCCcHHHH
Confidence 344665 68999999999999999888754 467777776 44433333332 68999999999998888
Q ss_pred HHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|.+++.++.+. +..+|++++++.++ +++++++++|| ||||.+ .+++++|.++|+++|+++|.|.++
T Consensus 129 ~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y 205 (388)
T d1j32a_ 129 EMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY 205 (388)
T ss_dssp HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHHhcCeEEEEecccccccCCCHHHHHHhCC---CCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhh
Confidence 88888999999999865 34799999999998 89999999999 599976 226899999999999999999986
Q ss_pred cc-ccccc--CCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 MN-AQVGL--CRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~-~~~~~--~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. ....- .+.. ...-.+++.+.+|+|+.| |.|+|++++++++++.+
T Consensus 206 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~----GlRvG~~~~~~~~~~~~ 259 (388)
T d1j32a_ 206 EKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT----GWRVGFLAGPVPLVKAA 259 (388)
T ss_dssp TTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT----TTCCEEEECCHHHHHHH
T ss_pred hcccccCCCCCCHHHhCcccccceeEecCChhhhhcc----hhHeEEEEECHHHHHHH
Confidence 31 11110 0000 111246777778887755 89999999988766544
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=9.7e-19 Score=161.51 Aligned_cols=183 Identities=19% Similarity=0.263 Sum_probs=134.6
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+-|.| .+|..++++++.+++.+..+... .++..++|+ ++...++.++. +++|+|++++|.|+.+.
T Consensus 56 ~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~--------~~gd~vlv~~P~y~~~~ 124 (388)
T d1gdea_ 56 THYGP---NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL--------KDGEEVLIPTPAFVSYA 124 (388)
T ss_dssp CSCCC---TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC--------CTTCEEEEEESCCTTHH
T ss_pred cCCCC---CcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhc--------CCCCEEEECCCCcHHHH
Confidence 34555 68999999999888887766432 355556665 44433333332 68999999999999888
Q ss_pred HHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|.+++.+|.++ +..+|+++|++.++ +++++++++|| ||+|.+- +++++|.++|+++++++|.|.++
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y 201 (388)
T d1gdea_ 125 PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVY 201 (388)
T ss_dssp HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHHcCCEEEEeecccccCCCCCHHHHHHhCc---cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 88899999999999875 34799999999997 78999999999 5999872 26899999999999999999986
Q ss_pred cc-ccccc--CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 MN-AQVGL--CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~-~~~~~--~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. ....- .+ +....-.|++.+.+|+|+.| |.|+|++++++++.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlR~G~ii~~~~~~~~~ 254 (388)
T d1gdea_ 202 EHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT----GWRLGFVAAPSWIIERM 254 (388)
T ss_dssp TTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG----GGCCEEEECCHHHHHHH
T ss_pred hhhhhccCCCCChhhccCCCCeEEEEeCChhhccCc----cccEEEEEeeccchhhh
Confidence 31 11110 01 11112236777777877655 89999999987665544
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=3.4e-18 Score=157.93 Aligned_cols=183 Identities=16% Similarity=0.178 Sum_probs=136.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
+.|.+ ++|..++++++.+++.+..|.+ ..++..++|+ +|...++.++. ++||.|++++|.|+.+..
T Consensus 62 ~~Y~~---~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~--------~~gd~vl~~~P~y~~~~~ 130 (382)
T d1b5pa_ 62 TKYAP---PAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL--------DPGDEVIVLSPYWVSYPE 130 (382)
T ss_dssp CSCCC---TTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHH
T ss_pred cCCCC---CCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhC--------CCCCEEEECCCCcHHHHH
Confidence 34544 6899999999999998887764 4567677776 44433333332 689999999999988888
Q ss_pred HHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 98 SAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
.++..|.+++.+|.++ +..+|++++++.++ +++++++++|| ||||.+ .+++++|.++|+++|+++|.|.++.
T Consensus 131 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~ 207 (382)
T d1b5pa_ 131 MVRFAGGVVVEVETLPEEGFVPDPERVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYE 207 (382)
T ss_dssp HHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHhcCeEEEEecccccccCCCHHHHHHhCC---CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEcccc
Confidence 8999999999999865 34789999999887 78999999999 599987 2268999999999999999999873
Q ss_pred c-cccc-cCCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 173 N-AQVG-LCRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 173 ~-~~~~-~~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. ...+ ...+... .--|++.+..|+|+.| |.|+|++++++++++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----GlR~G~~~~~~~~i~~~ 256 (382)
T d1b5pa_ 208 HLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMT----GWRIGYACGPKEVIKAM 256 (382)
T ss_dssp TCBSSSCCCCGGGTCTTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHH
T ss_pred ceecCCCCCCHHHcCCCCEEEEecchhhccCc----HhheEEEEECHHHHHHH
Confidence 1 1111 1112111 1136666677877755 89999999987766544
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=9.6e-18 Score=153.83 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++++|.+.+ +.+.||+.|...++.++. -++||+|++|+..|.+........|.+++.+++++
T Consensus 31 ~~v~~~E~~la~~~g~~~a-i~~~sgt~Al~~al~al~-------~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~ 102 (376)
T d1mdoa_ 31 PKNQELEAAFCRLTGNQYA-VAVSSATAGMHIALMALG-------IGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR 102 (376)
T ss_dssp HHHHHHHHHHHHHHCCSEE-EEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHHCcCeE-EEeCCHHHHHHHHHHHhC-------CCCCCEEEEecccccccccchhccccceeeecccc
Confidence 4678999999999999876 456789887766666542 26899999999998888888889999999999987
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
++.+|+++|+++++ ++|++|++++ .+|... |+++|.++|+++|+++|.|+||..+.-.- ...+.+|..+..+
T Consensus 103 ~~~~~d~~~l~~~i~---~~tkaIi~~h--~~G~~~-~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf 176 (376)
T d1mdoa_ 103 DTLMVTPEHIEAAIT---PQTKAIIPVH--YAGAPA-DLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSF 176 (376)
T ss_dssp TTCCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEEC
T ss_pred cccCCCHHHHHHhcC---CCCeEEEEeC--CCCCcc-chhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccC
Confidence 47899999999998 8999999875 679888 89999999999999999999985442211 2245566555555
Q ss_pred CCCcccCCCCCCCCCcceeEEEeC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
..+|.++. +.+|+++++.
T Consensus 177 ~~~K~l~~------g~GG~i~t~~ 194 (376)
T d1mdoa_ 177 HAIKNITC------AEGGIVVTDN 194 (376)
T ss_dssp CTTSSSCS------SSCEEEEESC
T ss_pred CCcCCCCC------CCCCEEEEec
Confidence 56787752 3458888875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.73 E-value=1.3e-16 Score=145.07 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=125.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCee---eEeeCchHHHHHHHHHHHHHHHHhhcCCCCC-EEEEcCCCCcccHH-HHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKI---SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRN-VCLIPVSAHGTNPA-SAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~---~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d-~Vlv~~~~hg~~~~-~~~~~g 103 (302)
++.+.+.++++++++++++|++.. .+.+++|+.+..+++.++. .+++ .+++....++.... .....+
T Consensus 28 ~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (361)
T d1m32a_ 28 DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--------GPQDKVLIVSNGAYGARMVEMAGLMG 99 (361)
T ss_dssp HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--------CTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh--------hhccccceeeehhhhhhHHHHhhhhh
Confidence 345667889999999999999642 3345566666544444432 3444 44444443332222 334455
Q ss_pred CEEEEeecCCCCCCCHH--HHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCC
Q psy7357 104 MSVEPVSVRKDGTIDFS--DLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~--~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~ 180 (302)
.+...+....+...+.+ .....++ ++++.|.+++- |.+|.+. |+++|+++||++|+++++|++|.++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tG~~~-~i~~i~~~~~~~g~~~~vDa~qs~G~~~~-d 174 (361)
T d1m32a_ 100 IAHHAYDCGEVARPDVQAIDAILNAD---PTISHIAMVHSETTTGMLN-PIDEVGALAHRYGKTYIVDAMSSFGGIPM-D 174 (361)
T ss_dssp CCEEEEECCTTSCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-C
T ss_pred cccccccccccCCccchhhHHHHHhc---cCccceEEEeeecccccch-hhhhhhhhhcccceeeEeecccccCcccc-c
Confidence 56666655454444433 3333333 77888888774 6799999 89999999999999999999987766654 5
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~ 227 (302)
..++++|++++++||+++.| ||+|+++++++..++++....+
T Consensus 175 ~~~~~~D~~~~s~~K~l~gp-----~G~g~l~~~~~~~~~~~~~~~~ 216 (361)
T d1m32a_ 175 IAALHIDYLISSANKCIQGV-----PGFAFVIAREQKLAACKGHSRS 216 (361)
T ss_dssp TTTTTCSEEEEESSSTTCCC-----SSEEEEEEEHHHHTTCTTCCSC
T ss_pred ccccccceEEeeecccccCC-----CCceEEEechhhhhhhcccccc
Confidence 67889999999999999744 5899999998887777665554
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.72 E-value=1.3e-16 Score=146.66 Aligned_cols=176 Identities=18% Similarity=0.243 Sum_probs=134.3
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee--eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHHhC
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI--SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQMA 102 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~~~ 102 (302)
-+++-+.++++++++.+++++|.+.. .+.+++|+.++++++..+. .+++++++....|.+... .+...
T Consensus 43 hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~--------~~~~~vl~~~~g~~~~~~~~~~~~~ 114 (388)
T d2ch1a1 43 NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRVLIAVNGIWAERAVEMSERY 114 (388)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc--------cccccccccccccccccchhhhhhh
Confidence 35677889999999999999999642 3345566777666666554 567888877665544432 45677
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
+...+.++.++....|.+++++.+.+ .+++.+.+++ .|.+|+.. |+++|+++||++|+++++|+++.++...+ +.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~t~tG~~~-~~~~i~~~~~~~~~~~~vD~~ss~g~~pi-d~ 190 (388)
T d2ch1a1 115 GADVRTIEGPPDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQ-PLEGVGQICHQHDCLLIVDAVASLCGVPF-YM 190 (388)
T ss_dssp TCEEEEEECCTTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CT
T ss_pred cccccccccccccccchhhhhhhhcc--CCcceeeeeeccccccccc-chhhhcchhccccceeeeeeeeccccccc-ch
Confidence 88999898877777888888888764 3455566655 46889999 79999999999999999999986665544 66
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
.++++|+++++.||+++.| ||+|+++.+++..+
T Consensus 191 ~~~~~d~~~~s~~K~~~gp-----~G~g~~~~~~~~~~ 223 (388)
T d2ch1a1 191 DKWEIDAVYTGAQKVLGAP-----PGITPISISPKALD 223 (388)
T ss_dssp TTTTCCEEECCCC-CCCCC-----SSCEEEEECHHHHH
T ss_pred hccCceEEEEccccccCCC-----CeEEEEeccHHHHH
Confidence 7899999999999999854 58999999875444
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=4.7e-17 Score=150.62 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
.-...+++.+++|-|.+.+.+ ..||-.|..++++++. ++||+||+++..||..... ....|+++.++
T Consensus 59 PT~~~LE~~la~LEg~~~a~~-~~SGmaAi~~~l~~l~--------~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~ 129 (392)
T d1gc0a_ 59 PTLNLLEARMASLEGGEAGLA-LASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 129 (392)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCcceee-hhhHHHHHHHHHHhhc--------cCCCeeecccccchhhhhhhhhhhccCCcccccC
Confidence 467889999999999887654 5678766655565554 6899999999988766553 34679999998
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++..+. ||++|+++||++|++++||.. ++...+.+|-++|+||
T Consensus 130 d~-----~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~-Di~~i~~ia~~~g~~~vvDnT--~atP~~~~Pl~~GaDi 198 (392)
T d1gc0a_ 130 DM-----ADLQALEAAMT---PATRVIYFESPANPNMHMA-DIAGVAKIARKHGATVVVDNT--YCTPYLQRPLELGADL 198 (392)
T ss_dssp CT-----TCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHGGGTCEEEEECT--TTHHHHCCGGGGTCSE
T ss_pred Cc-----cCHHHHHHhCC---CCCeEEEecccccceeeec-chHHHHHHHHhcCCEEEEecC--ccCccccChHHhCCCE
Confidence 75 48999999998 89999999999 6888888 899999999999999999954 5555567899999999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++.|+.|.+++. +..-.|.++++++.+.+
T Consensus 199 vihS~TKyi~Gh---sd~~~G~v~~~~~~~~~ 227 (392)
T d1gc0a_ 199 VVHSATKYLSGH---GDITAGIVVGSQALVDR 227 (392)
T ss_dssp EEEETTTTTTCS---SSCCCEEEEECHHHHHH
T ss_pred EEEecceeecCC---cccccccccchhHHHHH
Confidence 999999999843 33567888888766544
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.3e-16 Score=141.60 Aligned_cols=172 Identities=14% Similarity=0.077 Sum_probs=124.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++| .++++++.+++.+.+|.+. .++..++|+ ++..+++.++. ++||+|++++|.|+.+....+..|.+
T Consensus 35 ~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~~ 105 (361)
T d1d2fa_ 35 WKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--------ETGEGVVIHTPAYDAFYKAIEGNQRT 105 (361)
T ss_dssp SCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS--------CTTCEEEEEESCCHHHHHHHHHTTCE
T ss_pred CCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc--------ccccccccccccccchhHHHHhhcce
Confidence 456 4788888888888888754 466666676 44433333332 68999999999998888888899999
Q ss_pred EEEeecCC---CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-cccc
Q psy7357 106 VEPVSVRK---DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVGL 178 (302)
Q Consensus 106 v~~i~~~~---~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~~ 178 (302)
++.++.+. ++.+|++++++.+.+ +++++|+++|| |+||..- +++++|.++|+++|+++|+|.++..- ...-
T Consensus 106 ~~~v~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~ 183 (361)
T d1d2fa_ 106 VMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ 183 (361)
T ss_dssp EEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS
T ss_pred EEeecccccccccccccccchhhccc--CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccc
Confidence 99998753 235899999999973 78999999999 5899762 26999999999999999999986321 1111
Q ss_pred -CCC-C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 179 -CRP-G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 179 -~~p-~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
..+ . ...-.+++.+..|+++. .|.|+|++.+..
T Consensus 184 ~~~~~~~~~~~~~v~~~s~SK~~~~----~g~R~g~~~~~~ 220 (361)
T d1d2fa_ 184 PHIPWSNVARGDWALLTSGSKSFNI----PALTGAYGIIEN 220 (361)
T ss_dssp CCCCGGGTCCSSEEEEECSHHHHTC----GGGCCEEEEECS
T ss_pred ccccccccccccccccccccccccc----ccccceeeecch
Confidence 111 1 11123566666677664 489999998763
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.70 E-value=1.5e-16 Score=148.13 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=132.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhC--------CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCC
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITG--------YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSA 91 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g--------~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~ 91 (302)
+.|.| ++|..++++.+.+++.+.++ .+..++..++|+. +...++.++. ++||+|++++|.
T Consensus 66 ~~Y~~---~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--------~~Gd~Vlv~~P~ 134 (412)
T d1bw0a_ 66 NGYFP---TVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC--------DAGDYALVPQPG 134 (412)
T ss_dssp SSCCC---TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESC
T ss_pred CCCCC---CcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhh--------ccccceeeeecc
Confidence 34555 78999999999999988764 3345777777774 3433333332 689999999999
Q ss_pred CcccHHHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEE
Q psy7357 92 HGTNPASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVY 166 (302)
Q Consensus 92 hg~~~~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~lli 166 (302)
|+.+...++..|++++.+|+++ +...|++++++.+. +++++++++|| |+||.+ .+++++|.++|++++++++
T Consensus 135 y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi 211 (412)
T d1bw0a_ 135 FPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLF 211 (412)
T ss_dssp CTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEE
T ss_pred chhhhhhhhccCccccccccccccccchhhHHHHhhhh---ccccccccccccccccccchhhhccccccccccCCeeee
Confidence 9988888999999999999875 34689999999887 88999999999 599986 2268999999999999999
Q ss_pred EecCCcc-ccccc------CCCCcc--CCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 167 LDGANMN-AQVGL------CRPGDY--GSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 167 vD~a~~~-~~~~~------~~p~~~--gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
.|.++.- ...+. ...... ... +++.++.|+|+.| |+|+|++.+++....
T Consensus 212 ~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~----G~RvG~~~~~~~~~~ 270 (412)
T d1bw0a_ 212 SDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGN 270 (412)
T ss_dssp EECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCS
T ss_pred chhhHHHhccCCCCCccccccccccccccccccccccCccCccC----CCCcccccccchhhc
Confidence 9998631 11110 001111 112 4455566777654 999999999876554
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.70 E-value=5.4e-16 Score=141.60 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=130.1
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHHhCC
Q psy7357 28 QARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQMAG 103 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~~~g 103 (302)
.++-+.++++++++.+++++|++. ..+++++|+.+.++++..+. .+++++++....|..... .+...+
T Consensus 45 r~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (377)
T d1vjoa_ 45 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGRYG 116 (377)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc--------ccccccceeeechhhhhhhhhhhhhc
Confidence 356788999999999999999964 34445666776656655543 578888888777654433 345667
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
.....+....+...+.+..+....+ ++++.|.+++ .|.+|++. |+++|+++||++|+++++|+++..+...+ +..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~-~i~~i~~~~~~~g~~~~vDa~~~~g~~~~-~~~ 192 (377)
T d1vjoa_ 117 ADVRTISKPWGEVFSLEELRTALET--HRPAILALVHAETSTGARQ-PLEGVGELCREFGTLLLVDTVTSLGGVPI-FLD 192 (377)
T ss_dssp CEEEEEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTTTTSCC-CTT
T ss_pred ccccccccCCCCcccchhhhhhhhc--Ccceeeeeeeeeccceeee-chhhhhhhhhhccceEEEecchhhhhhhh-ccc
Confidence 7777777666666677776666653 4555555555 36889999 79999999999999999999986555543 567
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
++++|+++++.||+++.| |++|+++.+++..+
T Consensus 193 ~~~~d~~~~s~~K~~~gp-----~g~~~~~~~~~~~~ 224 (377)
T d1vjoa_ 193 AWGVDLAYSCSQKGLGCS-----PGASPFTMSSRAIE 224 (377)
T ss_dssp TTTCSEEECCSSSTTCSC-----SSCEEEEECHHHHH
T ss_pred ccccceeeecccccccCC-----CEEEEecchhhHHh
Confidence 899999999999999743 68888988876544
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=2.5e-17 Score=151.67 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=122.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe-ee-EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDK-IS-FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~-~~-~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~~v 106 (302)
.|......++++...+.++.+. .+ +..++|++|++++++++. ++++.|+++ .+.|+++...++..|+++
T Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~--------~~~~vi~~~~~~~~~~~~~~~~l~g~~~ 117 (366)
T d2aeua1 46 IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK--------PKKVIHYLPELPGHPSIERSCKIVNAKY 117 (366)
T ss_dssp THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC--------CSEEEEECSSSSCCTHHHHHHHHTTCEE
T ss_pred cCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC--------CCCEEEEecCCCcchhHHHHHHhcCCeE
Confidence 3444566777777777777553 33 445666677766666542 334444555 468888888888889886
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCc-eeccccHHHHHHHHHHhCCEEEEecCCccccc---ccCCC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STF-GVFEENITDVCELIHEHGGQVYLDGANMNAQV---GLCRP 181 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~-G~~~~di~~I~~ia~~~g~llivD~a~~~~~~---~~~~p 181 (302)
+ +. .|+++|+++++ ++|++|++.+| |+. +.++ |+++|+++||++|+++++|.++..... ....+
T Consensus 118 v--~~-----~d~e~l~~~i~---~~tk~i~~~~p~n~~~~~~~-~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~ 186 (366)
T d2aeua1 118 F--ES-----DKVGEILNKID---KDTLVIITGSTMDLKVIELE-NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA 186 (366)
T ss_dssp E--EE-----SCHHHHHTTCC---TTEEEEEECBCTTSCBCCHH-HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH
T ss_pred E--CC-----CCHHHHHHhcC---CCceEEEEEecCCCCcCCHH-HHHHHHHHhccCcEEEEEecCccccccccccCCCH
Confidence 4 33 28999999998 89999999998 543 3456 799999999999999999998743221 11233
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.++++|++++|.||+++ ||++|+++.++++++++.
T Consensus 187 ~~~~~di~~~S~sK~~~------g~~~G~i~~~~~~i~~~~ 221 (366)
T d2aeua1 187 LKLGADLVVTSTDKLME------GPRGGLLAGKKELVDKIY 221 (366)
T ss_dssp HHHTCSEEEEETTSSSS------SCSCEEEEEEHHHHHHHH
T ss_pred hhcCceEEEeccccccc------ccceeEEEecHHHHHHHH
Confidence 46789999999998654 899999999998887764
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.70 E-value=1.9e-16 Score=148.50 Aligned_cols=181 Identities=14% Similarity=0.205 Sum_probs=129.8
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHhC----CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 23 FIPQDQARGYEQLIGELETDLCEITG----YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 23 y~p~e~sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
|++ .+|..++++++.+.+.+.+| ++..++..++|+ ++...++.++. ++||.|++++|.|+.+..
T Consensus 80 Y~~---~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~--------~pGd~Vlv~~P~y~~~~~ 148 (431)
T d1m7ya_ 80 FQD---YHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDR 148 (431)
T ss_dssp CCC---TTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHH
T ss_pred CcC---CcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHH
Confidence 555 68999999999999999887 334577777776 44434444332 689999999999887776
Q ss_pred HHH-hCCCEEEEeecCCC--CCCCHHHHHHHHhc---cCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEe
Q psy7357 98 SAQ-MAGMSVEPVSVRKD--GTIDFSDLETKVKK---NKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 98 ~~~-~~g~~v~~i~~~~~--g~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD 168 (302)
.+. ..|.+++.++++++ ..+|++++++.+++ ...++++++++|| |++|.+- .++++|.++|+++|+++|+|
T Consensus 149 ~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~D 228 (431)
T d1m7ya_ 149 DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD 228 (431)
T ss_dssp HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeec
Confidence 655 46899999998753 47899999988863 2357899999999 5899762 26899999999999999999
Q ss_pred cCCcccc-cc--------cCC-------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 169 GANMNAQ-VG--------LCR-------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 169 ~a~~~~~-~~--------~~~-------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
.++.... .. +.. +....-=+++.+.+|+|+. .|.|+|+++++++++
T Consensus 229 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~----~G~RiG~~~~~~~~i 290 (431)
T d1m7ya_ 229 EIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL----PGFRVGAIYSNDDMV 290 (431)
T ss_dssp CTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCC----GGGCEEEEEESCHHH
T ss_pred ccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccC----CCCccceeccchhhh
Confidence 9873211 00 000 0001111556666676664 489999999987654
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.70 E-value=1.3e-16 Score=151.84 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=138.0
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee----------eEeeCchHHHHHHHHHHHHHHHH-h---hcC-------CCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI----------SFQPNSGAQGEYAGLRAIQCYHQ-A---QDA-------HHRNVC 85 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~----------~~~~~~Ga~a~~a~l~a~~~~~~-~---~g~-------~~~d~V 85 (302)
+.+....++-.++.+++++++|.+.. -+.+++|+.+++.++.+.|.... . .+. .++-+|
T Consensus 106 ~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv 185 (476)
T d1js3a_ 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185 (476)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEE
Confidence 56777778888899999999999642 35666778888788777765321 1 100 012368
Q ss_pred EEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecCC-CceeccccHHHHHHHHHHh
Q psy7357 86 LIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYPS-TFGVFEENITDVCELIHEH 161 (302)
Q Consensus 86 lv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~ 161 (302)
++++..|.+....+...|+.++.+|+|+++.+|+++|++.|++. ...+.+|+.+.++ .+|.++ |+++|+++|+++
T Consensus 186 ~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iD-pl~~I~~i~~~~ 264 (476)
T d1js3a_ 186 YASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFD-NLLEVGPICHEE 264 (476)
T ss_dssp EEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHT
T ss_pred EecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeec-cHHHHHHHHHhc
Confidence 89999998888888889999999999999999999999999742 2235667777665 799999 799999999999
Q ss_pred CCEEEEecCCcccccccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 162 GGQVYLDGANMNAQVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
|+++|||+|+.......... +-..+|.++.+.||++..|+ +.|++++++
T Consensus 265 ~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~-----~~g~~l~r~ 318 (476)
T d1js3a_ 265 DIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-----DCSAMWVKR 318 (476)
T ss_dssp TCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESC
T ss_pred CcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCC-----cceeecccc
Confidence 99999999863222222111 22368999999999999774 467788875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.69 E-value=1.7e-17 Score=153.43 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=132.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.+.+.++++++.+++++|++..++... +++++...++....... .+..+++.|++++..|..........+.++..+
T Consensus 67 ~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~--~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 144 (404)
T d1qz9a_ 67 GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQ--ATRSPERRVIVTETSNFPTDLYIAEGLADMLQQ 144 (404)
T ss_dssp SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHH--HHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhh--cccCCCcEEEEeccccchHHHHHHhhhheeeee
Confidence 345778899999999999987655444 45555423322211111 111467777888777655443333333444444
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+.++..++++++++++ ++|++|++++. |.+|.+. |+++|+++||++|+++++|++|..+...+ +..++++|+
T Consensus 145 ~~~~~~~~~~~~~~~~i~---~~T~lV~i~~v~~~tG~~~-pv~~i~~~~~~~~~~~~vD~~q~~g~~~~-~~~~~~~d~ 219 (404)
T d1qz9a_ 145 GYTLRLVDSPEELPQAID---QDTAVVMLTHVNYKTGYMH-DMQALTALSHECGALAIWDLAHSAGAVPV-DLHQAGADY 219 (404)
T ss_dssp SCEEEEESSGGGHHHHCS---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHHTCSE
T ss_pred ceeccccccchhHHHhcC---CCceEEEEeccccccccee-cHHHHhccccccccceeEEeecccccccc-ccccccceE
Confidence 554557778899999998 89999999997 5899999 89999999999999999999997776654 456789999
Q ss_pred EEeCCCcccCCCCCCCCCc-ceeEEEeCCCCCCCCCCc
Q psy7357 189 SHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~~lpg~~ 225 (302)
+++++||++.. ||+ +|+++.++++.+.+|...
T Consensus 220 ~~~s~~K~~~~-----~~g~~g~~~~~~~~~~~~~~~~ 252 (404)
T d1qz9a_ 220 AIGCTYKYLNG-----GPGSQAFVWVSPQLCDLVPQPL 252 (404)
T ss_dssp EEECSSSTTCC-----CTTCCCEEEECTTTTTTSCCSC
T ss_pred EEEechhhccc-----CCceEEEEEechhhhhhCCccc
Confidence 99999999874 454 688888888887776443
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.68 E-value=5.1e-16 Score=143.68 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
.-...+++.+++|.|.+.+.+ ..||..|..++++++. ++||+||+++..|+.... .....|+++.++
T Consensus 63 PT~~~LE~~la~LEgg~~a~~-~sSGmaAi~~~l~~ll--------~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~v 133 (397)
T d1y4ia1 63 PTTDALEKKLAVLERGEAGLA-TASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV 133 (397)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCcccee-ehHHHHHHHHHHhhcc--------CCCCeeeeecccccccchhhhcccCCCceEeecc
Confidence 577889999999999887654 4578766655565654 789999999998876544 345789999998
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|+++.| |++..+. ||++|+++||++|++++||. .++...+.+|-++|+||
T Consensus 134 d~-----~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~-Di~~i~~iA~~~gi~~vvDn--T~atP~~~~Pl~~GaDi 202 (397)
T d1y4ia1 134 DA-----GKPEEIRAAMR---PETKVVYIETPANPTLSLV-DIETVAGIAHQQGALLVVDN--TFMSPYCQQPLQLGADI 202 (397)
T ss_dssp CT-----TSHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEEC--TTTCTTTCCGGGGTCSE
T ss_pred CC-----CCHHHHHHhcC---CCCcEEEecCCcccceeec-ccHHHHHHhhcCCceEEecC--cccCcccCcchhcCCCE
Confidence 75 47999999998 89999999999 6887788 89999999999999999995 45555567899999999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
++.|+.|.+++. +..-+|.++++++.+.
T Consensus 203 vihS~TKyi~Gh---sdvl~G~v~~~~~~~~ 230 (397)
T d1y4ia1 203 VVHSVTKYINGH---GDVIGGIIVGKQEFID 230 (397)
T ss_dssp EEEETTTTTTCS---SCCCCEEEEECHHHHH
T ss_pred EEEehhhhcCCC---cceeeeccCCCHHHHH
Confidence 999999999843 3456788888876543
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=2.2e-16 Score=144.98 Aligned_cols=179 Identities=11% Similarity=0.122 Sum_probs=131.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC----Ce-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHh
Q psy7357 29 ARGYEQLIGELETDLCEITGY----DK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQM 101 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~----~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~ 101 (302)
++-+.+.+.++++.++++++. +. ..+++++|+.++.+++..+.. ..+++|+|++....|.++. ..++.
T Consensus 31 ~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~-----~~~~gd~vlv~~~~~~~~~~~~~~~~ 105 (382)
T d2bkwa1 31 SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFIL-----SKAPNKNVLVVSTGTFSDRFADCLRS 105 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSC-----TTCSCCEEEEECSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHH-----hcCCCCceEEEEechhhhhhhhhccc
Confidence 345778888999999999885 33 345667777776566655431 1157899999877654432 24567
Q ss_pred CCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC--CEEEEecCCcccccc
Q psy7357 102 AGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG--GQVYLDGANMNAQVG 177 (302)
Q Consensus 102 ~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g--~llivD~a~~~~~~~ 177 (302)
.+..+..+...+ ....|.+.+++.+.+ ++++.+++++- +.+|+.. |+++++++|++++ +++++|+++.++...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~-~~~~~~~~~~~~~~~~~~~vDa~qs~g~~p 182 (382)
T d2bkwa1 106 YGAQVDVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLS-DLKAISQAIKQTSPETFFVVDAVCSIGCEE 182 (382)
T ss_dssp TTCEEEEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTSEEEEECTTTTTTSC
T ss_pred cccccccccccCCCCccchhHHHHHhhh--ccchheeeeeccccccccc-cchhhhhhccccccceeeeeeccccccccc
Confidence 888888776544 446889999988875 34455555553 6789998 7999999988764 999999998666655
Q ss_pred cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 178 LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 178 ~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+ +..++++|++++++||+|+.| ||+|++++++++.+++
T Consensus 183 i-d~~~~giD~~~~s~~K~l~gP-----~G~g~l~vs~~~~~~~ 220 (382)
T d2bkwa1 183 F-EFDEWGVDFALTASQKAIGAP-----AGLSISLCSSRFMDYA 220 (382)
T ss_dssp C-CTTTTTCSEEEEESSSTTCCC-----SCEEEEEECHHHHHHH
T ss_pred c-cccccCeeEEeecccccCcCC-----CchhhhhccHHHHhhh
Confidence 4 667899999999999999754 6999999998765544
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.66 E-value=4.2e-16 Score=144.48 Aligned_cols=171 Identities=14% Similarity=0.137 Sum_probs=127.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++++.+.+.+..|.+. .++..++|+ ++...++.++. ++||+|++++|.|+.+...++..|.+
T Consensus 69 ~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~--------~~Gd~vlv~~P~y~~~~~~~~~~g~~ 140 (395)
T d1xi9a_ 69 SEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGGK 140 (395)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc--------CCCCEEEEcCCccccchhhhhhcCCE
Confidence 68999999999999999988754 466666666 43433333322 68999999999998888888999999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-ccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~-~ 178 (302)
++.+|.+. +..+|++++++.+. +++++|++++| ||||.+- +.+++|.++|++++++++.|.++..- ... .
T Consensus 141 ~v~v~~~~~~~~~~d~~~~~~~~~---~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (395)
T d1xi9a_ 141 PVEYRTIEEEDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH 217 (395)
T ss_dssp EEEEEEEGGGTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC
T ss_pred EEEEeccccccccchHHHHHHhhc---ccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc
Confidence 99998754 45789999999987 88999999999 5999872 26899999999999999999876311 111 1
Q ss_pred CCCCc--cCCc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 179 CRPGD--YGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 179 ~~p~~--~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..+.. .... |++.|.+|+|+.| |+|+|++++.
T Consensus 218 ~~~~~~~~~~~vi~~~S~SK~~~~~----GlRvG~~~~~ 252 (395)
T d1xi9a_ 218 ISPGSLTKDVPVIVMNGLSKVYFAT----GWRLGYMYFV 252 (395)
T ss_dssp CCHHHHCSSSCEEEEEESTTTTCCG----GGCCEEEEEE
T ss_pred cchhhcCCCCCEEEEeCcchhcccc----hhhcEeeEec
Confidence 11111 1123 5555667777655 8999998765
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.66 E-value=7.2e-16 Score=144.40 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=125.4
Q ss_pred cccHHHHHHHHHHHHHHHhCC----CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-hC
Q psy7357 29 ARGYEQLIGELETDLCEITGY----DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-MA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~----~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-~~ 102 (302)
++|..++++++.+.+.+.+|. +..++..++|+ ++...++.++. ++||+|++++|.|+.+...+. ..
T Consensus 82 ~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~--------~~Gd~Vlv~~P~y~~~~~~~~~~~ 153 (428)
T d1iaya_ 82 YHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRT 153 (428)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTT
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC--------CCCCEEEEccCCchHHHHHHHHhc
Confidence 689999999999999998874 33466666676 44434443332 689999999999987776555 45
Q ss_pred CCEEEEeecCC--CCCCCHHHHHHHHh---ccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 103 GMSVEPVSVRK--DGTIDFSDLETKVK---KNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 103 g~~v~~i~~~~--~g~iD~~~l~~~i~---~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
|++++.++.+. +..+|+++++++++ ...+++++|+++|| |++|..- +++++|.++|+++|+++|.|.++...
T Consensus 154 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~ 233 (428)
T d1iaya_ 154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccccc
Confidence 89999999875 35789998877653 23478999999999 5899762 26899999999999999999987421
Q ss_pred ccccCCC-------------C-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 175 QVGLCRP-------------G-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 175 ~~~~~~p-------------~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
...-..+ . ...--+++.+.+|+|+.| |.|+|++++.+
T Consensus 234 ~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----GlRiG~~~~~~ 284 (428)
T d1iaya_ 234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFN 284 (428)
T ss_dssp CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESC
T ss_pred ccCcccccccccccchhhccccccceEEEEecCCCcccCC----Ccccccccccc
Confidence 1000000 0 011125666677777654 89999999864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=1.1e-15 Score=139.93 Aligned_cols=175 Identities=18% Similarity=0.152 Sum_probs=126.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
.+|.. ++++.+++.++++..++..++|+ ++...++.++. .++|.|+++++.|..+.......|.+++
T Consensus 60 ~~G~~----elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~--------~~~d~v~~~~p~~~~~~~~~~~~g~~~~ 127 (368)
T d1v2da_ 60 PAGLP----ALREALAEEFAVEPESVVVTSGATEALYVLLQSLV--------GPGDEVVVLEPFFDVYLPDAFLAGAKAR 127 (368)
T ss_dssp TTCCH----HHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEE
T ss_pred CcCCH----HHHHHHHhhcccCCcceeeccchHHHHHHHhhccc--------cccccccccCCcchhhhhHHHhcCCccc
Confidence 45654 56677888899988777777776 43433333322 6789999999999888888888999999
Q ss_pred EeecCC---CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 108 PVSVRK---DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 108 ~i~~~~---~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
.++++. ...+|+++++++++ +++++++++|| |+||.+. .++++|+++|+++|++++.|.++.........+
T Consensus 128 ~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~ 204 (368)
T d1v2da_ 128 LVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPR 204 (368)
T ss_dssp EEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC
T ss_pred eeccccccccccCCHHHHHHhhc---cCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccc
Confidence 888753 35799999999998 78999999999 5999874 158899999999999999998763222111111
Q ss_pred C----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 G----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. .....+++.+.+|.++ +.|.|+|++.+++++++.+.
T Consensus 205 ~~~~~~~~~~~~~~~~sk~~~----~~G~R~g~~~~~~~~~~~~~ 245 (368)
T d1v2da_ 205 RLREFAPERTFTVGSAGKRLE----ATGYRVGWIVGPKEFMPRLA 245 (368)
T ss_dssp CHHHHCTTTEEEEEEHHHHTT----CGGGCCEEEECCTTTHHHHH
T ss_pred ccccccccccceeeccccccc----ccccccccccccccccchhh
Confidence 1 1112344544455544 55899999999988876554
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.65 E-value=2.3e-16 Score=147.25 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=135.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
+|-|.| .+|..++++.+.+++.+..|.+. .++..++|++ |...++.++. +++|.|+++++.|+.+
T Consensus 59 ~~~Y~~---~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~--------~~gd~vlv~~P~y~~~ 127 (418)
T d2r5ea1 59 ANQYTR---GFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV--------DEGDEVIIIEPFFDCY 127 (418)
T ss_dssp GGSCCC---TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTH
T ss_pred CcCCCC---CCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc--------ccccceeccccccchh
Confidence 445655 78999999999999999998763 3677777874 4433333332 7899999999999999
Q ss_pred HHHHHhCCCEEEEeecCCCC----------CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhC
Q psy7357 96 PASAQMAGMSVEPVSVRKDG----------TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHG 162 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~~~g----------~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g 162 (302)
...+...|.+++.+++++++ ..|.+++++... ++++++++++| |++|.+- +.+++|+++|+++|
T Consensus 128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~ 204 (418)
T d2r5ea1 128 EPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWN 204 (418)
T ss_dssp HHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh---ccccceecCCcCccccccccHHHHHHHhhhhhcCC
Confidence 99999999999999986532 468888888776 78999999999 5999762 26889999999999
Q ss_pred CEEEEecCCccc-cccc------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANMNA-QVGL------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~~~-~~~~------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|.|.++..- .... .-++...--+++.+..|+++.| |.|+|++++++++++.+
T Consensus 205 ~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~p----GlRiG~~~~~~~~i~~~ 266 (418)
T d2r5ea1 205 VLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLT----GWKIGWAYGPEALLKNL 266 (418)
T ss_dssp CEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG----GGCCEEEESCHHHHHHH
T ss_pred eeeecccchhhhccCCCccccccccccccceeeeeecCCccccCC----Ccccccccccchhhhhh
Confidence 999999886211 1110 0111222225566667777655 99999999988766544
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=4.8e-16 Score=142.19 Aligned_cols=175 Identities=18% Similarity=0.169 Sum_probs=132.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccH-HHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNP-ASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~-~~~~~~g~~ 105 (302)
+.-+.++++++++.++++++.+.. .+.+++|+.+.++++..+. .++++|++.... |+... ..++.++.+
T Consensus 28 ~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~--------~~g~~vlv~~~G~f~~~~~~~a~~~~~~ 99 (348)
T d1iuga_ 28 TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVLVPVYGKFSERFYEIALEAGLV 99 (348)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc--------cccccceeecchHHHHHHHHHHHhcCcc
Confidence 456889999999999999999754 5567777777767766654 577877776554 33332 356788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC--CEEEEecCCcccccccCCCC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG--GQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g--~llivD~a~~~~~~~~~~p~ 182 (302)
+..+..++...++++++ .+ ++++.|++++. +.+|++. |+++|+++|++++ +++++|+++..+...+ +..
T Consensus 100 ~~~~~~~~g~~~~~~~~---~~---~~~~~v~~~h~eTstG~~~-~i~~i~~~~~~~~~~~l~~vDavss~g~~~i-~~d 171 (348)
T d1iuga_ 100 VERLDYPYGDTPRPEDV---AK---EGYAGLLLVHSETSTGALA-DLPALARAFKEKNPEGLVGADMVTSLLVGEV-ALE 171 (348)
T ss_dssp EEEEECCTTCCCCTTTS---CC---SSCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTCEEEEECTTTBTTBCC-CSG
T ss_pred cccccccCCCccccccc---cc---cCCCeeEEEecchhhhhhc-cHHHHHHHHHhhhccceeechhhhccccccc-ccc
Confidence 99888866545555432 12 45666777764 5789999 7999999999875 7888999875555444 567
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++++|++++++||+|+.| ||+|+++++++++++++.+
T Consensus 172 ~~~iD~~~~~sqK~l~gp-----pG~~~v~~s~~~le~~~~~ 208 (348)
T d1iuga_ 172 AMGVDAAASGSQKGLMCP-----PGLGFVALSPRALERLKPR 208 (348)
T ss_dssp GGTCSEEEEESSSTTCCC-----SCEEEEEECHHHHHTCCCC
T ss_pred cccCCEEEeccccceecC-----CceeeeeechHHHhhhccc
Confidence 889999999999999865 7999999999888877654
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.64 E-value=2e-15 Score=139.09 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH----HhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA----QMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~----~~~g~~v~~i 109 (302)
.-.+.+++++++|-|.+.+.+ ..||-.|. ++++++. ++||+||+++..||...... ...|+++.++
T Consensus 49 Pt~~~le~~la~LE~~~~a~~-fsSGMaAi-sall~ll--------~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 118 (380)
T d1ibja_ 49 PTRDALESLLAKLDKADRAFC-FTSGMAAL-SAVTHLI--------KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 118 (380)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE-ESSHHHHH-HHHHTTS--------CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHcCCceEEe-hhhHHHHH-HHHHHhh--------CCCCEEEEEecccccccchhhhhhcccccccccc
Confidence 567899999999999887644 56776555 3443332 68999999999988765543 3568898887
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
.. .|+++++++++ ++|++|+++.| |++..+. |+++|+++||++|++++||.. ++.....+|-++|+||
T Consensus 119 d~-----~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~-Di~~i~~iA~~~g~~~vVDnT--~atP~~~~Pl~~GaDi 187 (380)
T d1ibja_ 119 NT-----TKLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKISEMAHAQGALVLVDNS--IMSPVLSRPLELGADI 187 (380)
T ss_dssp CT-----TSHHHHHHHCC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHTTTCEEEEECT--TTCTTTCCGGGTTCSE
T ss_pred Cc-----chHHHHHHHhc---cCccEEEeccccccccccc-cHHHHHHHHHHcCCeEEeecc--ccccccccccccCCCE
Confidence 75 47899999998 89999999999 6888888 899999999999999999953 5555557899999999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
++.|+.|.+++. +..-.|.++++.
T Consensus 188 VvhS~TKyi~Gh---sDv~~G~v~~~~ 211 (380)
T d1ibja_ 188 VMHSATKFIAGH---SDVMAGVLAVKG 211 (380)
T ss_dssp EEEETTTTTTCS---SCCCCEEEEECS
T ss_pred EEecccceeccc---cCccccccccch
Confidence 999999999843 345678888774
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=1.2e-15 Score=140.62 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=126.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+++.+..|.+ ..++..++|++ +...++.++. ++++.|++++|.|+.+...+...|.+
T Consensus 63 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~--------~~gd~V~i~~P~y~~~~~~~~~~g~~ 134 (389)
T d2gb3a1 63 SAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGVK 134 (389)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTCE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc--------cCCCeEEEeCCCCccccccccccCcc
Confidence 6899999999999999988865 45677777774 4433333332 68999999999988888888889999
Q ss_pred EEEeecCCCC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCccc-cccc-C
Q psy7357 106 VEPVSVRKDG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANMNA-QVGL-C 179 (302)
Q Consensus 106 v~~i~~~~~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~~~-~~~~-~ 179 (302)
++.++.++++ ..+.+.+.+.+. +++++++++|| |+||.. .+++++|.++|+++++++|.|.++..- .... .
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~ 211 (389)
T d2gb3a1 135 LIPVTRRMEEGFAIPQNLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA 211 (389)
T ss_dssp EEEEECCGGGTSCCCTTGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred ccccccccccccchhhhhhhhcc---cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccc
Confidence 9999987643 445555555555 78999999999 599976 226999999999999999999876311 1110 0
Q ss_pred CC--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 180 RP--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 180 ~p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
+. ....-.+++.++.|.++.| |.|+|++.++++
T Consensus 212 ~~~~~~~~~~~v~~s~sK~~~~~----GlRiG~~~~~~~ 246 (389)
T d2gb3a1 212 SALSIESDKVVVIDSVSKKFSAC----GARVGCLITRNE 246 (389)
T ss_dssp CGGGSCCTTEEEEEESTTTTTCG----GGCCEEEECSCH
T ss_pred cccccccccccccccccccccCc----ccceeeeeccch
Confidence 00 1112346666677877765 899999998764
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=7.4e-15 Score=135.38 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~ 108 (302)
-.-...+++++++|-|.+.+.+ ..||-.|..++++++. +++|+|++++..|+.... .....|.++.+
T Consensus 49 nPt~~~le~~la~LEgg~~a~~-~sSGMaAi~~~l~~l~--------~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~ 119 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGAGAVL-TNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF 119 (384)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCceEE-ecChHHHHHHHHhhcc--------cccceecccccccchhhhhhhhhhccccccccc
Confidence 3678899999999999887644 5678666645555543 789999999988875543 33456778877
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+.. .|.++++++++ ++|++|+++.| |++..+. ||++|+++||++|++++||. .++...+.+|-++|+|
T Consensus 120 ~d~-----~d~~~~~~~~~---~~t~~v~~EspsNP~l~v~-Di~~i~~ia~~~g~~~vVDN--T~atP~~~~Pl~~GaD 188 (384)
T d1cs1a_ 120 VDQ-----GDEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREVGAVSVVDN--TFLSPALQNPLALGAD 188 (384)
T ss_dssp ECT-----TCHHHHHHHHH---TCCSEEEEECSCTTTCCCC-CHHHHHHHHHHTTCEEEEEC--TTTCTTTCCGGGGTCS
T ss_pred ccC-----CCHHHHHhhcc---ccccEEEEeccccccceec-cHHHHhhhhhhcCcEEEEec--cccCcccccccccCCC
Confidence 764 48899999999 89999999999 6877777 89999999999999999995 4555556789999999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
|++.|+.|++++. |..-.|.++++.
T Consensus 189 iVvhS~TKyi~Gh---sdv~~G~vv~~~ 213 (384)
T d1cs1a_ 189 LVLHSCTKYLNGH---SDVVAGVVIAKD 213 (384)
T ss_dssp EEEEETTTTTTCS---SCCCCEEEEESS
T ss_pred EEEEccccccccC---CCcccccccCCc
Confidence 9999999999843 334567777764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=3e-15 Score=137.93 Aligned_cols=178 Identities=13% Similarity=0.170 Sum_probs=132.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--e-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--I-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
++|..++++.+.+.+.+.+|.+. . ++..++|+ ++...++.++. +++|.|+++++.|..+.......|.
T Consensus 62 ~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~ 133 (382)
T d1u08a_ 62 MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV--------RNGDEVICFDPSYDSYAPAIALSGG 133 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc--------cccceEEEecccccchhhhhhhccc
Confidence 78999999999999999999764 2 46666676 45544444443 6899999999998888888888999
Q ss_pred EEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecc--ccHHHHHHHHHHhCCEEEEecCCcccccc-cC
Q psy7357 105 SVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVG-LC 179 (302)
Q Consensus 105 ~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~-~~ 179 (302)
.++.++.+++ ...|++++++.+. +++++++++||| ++|.+- .++++|.+++.+++.+++.|..+...... ..
T Consensus 134 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~ 210 (382)
T d1u08a_ 134 IVKRMALQPPHFRVDWQEFAALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG 210 (382)
T ss_dssp EEEEEECCTTTCCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC
T ss_pred cceecccccccccCCHHHHhhhhc---cCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccc
Confidence 8888888764 5789999999887 789999999995 899873 25788888888999999888765321111 11
Q ss_pred CCC------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPG------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+. ...--|++.++.|+++.| |.|+|++++++++++.+
T Consensus 211 ~~~~~~~~~~~~~~i~~~s~SK~~~~p----G~RiG~~v~~~~~~~~~ 254 (382)
T d1u08a_ 211 HASVLAHPQLRERAVAVSSFGKTYHMT----GWKVGYCVAPAPISAEI 254 (382)
T ss_dssp CCCGGGSHHHHTTEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHH
T ss_pred cccccccccccCcEEEEeeccccccCC----cccchhhhccchhHHHH
Confidence 110 011126777777888765 89999999988766554
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.63 E-value=3.6e-15 Score=137.88 Aligned_cols=173 Identities=15% Similarity=0.160 Sum_probs=124.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe--eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDK--ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
+|..++++.+.+.+++.+|.+. .++..++|+ ++...++.++. +++|.|+++++.|..+.......|.+.
T Consensus 66 ~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~--------~pgd~vi~~~p~~~~~~~~~~~~g~~~ 137 (394)
T d1c7na_ 66 GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQERKI 137 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc--------ccccccccccCcccchhhHHhhhhhcc
Confidence 4566778888888888888754 467667776 44433333332 789999999998877777888899999
Q ss_pred EEeecCC---CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccccC
Q psy7357 107 EPVSVRK---DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGLC 179 (302)
Q Consensus 107 ~~i~~~~---~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~~ 179 (302)
+.++.+. ...+|.+.++.++.. +++++++++|| ||||.+- +++++|+++|+++++++|.|.++.- ......
T Consensus 138 v~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~ 215 (394)
T d1c7na_ 138 IECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYE 215 (394)
T ss_dssp EECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCC
T ss_pred cccccccccccccchhhhhhhhhcc--ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCcc
Confidence 8888643 235899999888862 67999999999 6999872 2688999999999999999998631 111100
Q ss_pred -C------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 180 -R------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 180 -~------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
. +.....-+++.+..|+|+.| |+|+|+++++++
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~R~g~~~~~~~ 255 (394)
T d1c7na_ 216 HTVFQSIDEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNP 255 (394)
T ss_dssp CCCGGGSCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCH
T ss_pred ccchhhhhcccccceeeccccccccccc----ccccccccccCh
Confidence 0 11112336667777887754 899999988753
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=3.8e-15 Score=135.77 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCC-EEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRN-VCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d-~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.++++.+++.+|++..++..++|+. +...++.++. ++|| +|+++++.|+.+...++..|.+++.++.+++
T Consensus 59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~--------~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~ 130 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC--------EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN 130 (354)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTT
T ss_pred HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh--------ccccccccccccccccchhhhhccCceeeccccccc
Confidence 4788999999999988888888884 3333333332 5776 6889999998888888999999999999888
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc--cHHHHHHHHHHhCCEEEEecCCc-cccc-ccC-CCCccCCcE
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE--NITDVCELIHEHGGQVYLDGANM-NAQV-GLC-RPGDYGSDV 188 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~--di~~I~~ia~~~g~llivD~a~~-~~~~-~~~-~p~~~gaDi 188 (302)
..+|++++++.+ +++++|++++|| ++|.+.+ .++.+.+.++ ++.++++|.++. .... ... ......--+
T Consensus 131 ~~~d~~~l~~~~----~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~~~~~~~~~~i 205 (354)
T d1fg7a_ 131 WQLDLQGISDKL----DGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLA 205 (354)
T ss_dssp SCCCHHHHHTSC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEE
T ss_pred cccchhhhhhcc----cccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccchhhcccccce
Confidence 899999998765 478999999995 8898741 3455555444 466666787642 1111 010 112222235
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.|.+|+|+ +.|.|+||+++++++++.+
T Consensus 206 v~~S~SK~~~----laGlRiGy~i~~~~~i~~l 234 (354)
T d1fg7a_ 206 ILRTLSKAFA----LAGLRCGFTLANEEVINLL 234 (354)
T ss_dssp EEEESSSTTC----CGGGCCEEEEECHHHHHHH
T ss_pred EEeCCccccC----CCccccccccccchhhhhh
Confidence 5555566555 5599999999998877665
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.61 E-value=2.6e-15 Score=141.59 Aligned_cols=171 Identities=15% Similarity=0.047 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-hCCCEEE--Eee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-MAGMSVE--PVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-~~g~~v~--~i~ 110 (302)
..+.|+|+.+++++|++.+.+.+++++.++.++++++. +++|+||+++..|.+...... ..+..++ .++
T Consensus 66 ~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~--------~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~ 137 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTN 137 (462)
T ss_dssp THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhc--------CCCCeEEecccchHHHHHHHHHHhcCCceeeecc
Confidence 35899999999999999876655544556666666554 789999999999877655333 3344444 444
Q ss_pred cCCCC--------CCCHHHHHHHHhcc------CCCe-EEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 111 VRKDG--------TIDFSDLETKVKKN------KETL-SCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 111 ~~~~g--------~iD~~~l~~~i~~~------~~~t-~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
+++.| .+|.+.+++.+.+. .+++ .+++++.||.+|.+. |+++|+++||++|+++++|+|+....
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~-dl~~I~~ia~~~g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 138 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIY-NAHEVVKRIGHLCDYIEFDSAWVGYE 216 (462)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEE-CHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred cccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchh-hHHHHHHHHHHcCCEEEEechhhccc
Confidence 55444 34555554443211 1233 456667789999999 89999999999999999999985443
Q ss_pred cccC-CC-----------CccCCcEEEeCCCcccCCCCCCCCCc-ceeEEEeCCCCC
Q psy7357 176 VGLC-RP-----------GDYGSDVSHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAP 219 (302)
Q Consensus 176 ~~~~-~p-----------~~~gaDiv~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~ 219 (302)
.... .+ .+.++|+++.++||+++. ++ .+++..++..+.
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~------~~~g~ll~~~~~~~~ 267 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG------FSQTSQIHKKDSHIK 267 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC------CTTCEEEEEECGGGT
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCccccc------ccceEEEEecccccc
Confidence 2210 01 123469999999999973 43 345555655443
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=2.2e-14 Score=133.57 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
.-...+++++++|-|.+.+.+ ..||-.|..++++++. ++||+||+++..||.... .....|+++.++
T Consensus 58 PT~~~LE~~la~LE~~~~a~~-~~SGmaAi~~~~~~l~--------~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 128 (421)
T d2ctza1 58 PTVDVLEKRLAALEGGKAALA-TASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCeEEE-ecChHHHHHHHHHhhc--------ccccceeecCCcCCchhHHHHHHHhhccccceec
Confidence 577889999999999887644 5678666545555554 689999999998876654 345789999887
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccc-cccCCCCccCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQ-VGLCRPGDYGSD 187 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~-~~~~~p~~~gaD 187 (302)
..+ -+.+..++.++ ++|++|+++.| |++..+. ||++|+++||++|++++||. .++. ..+.+|-++|+|
T Consensus 129 d~~----~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~-Di~~i~~iA~~~g~~~vvDn--T~a~tP~~~~Pl~~GaD 198 (421)
T d2ctza1 129 SRE----ERPEEFLALTD---EKTRAWWVESIGNPALNIP-DLEALAQAAREKGVALIVDN--TFGMGGYLLRPLAWGAA 198 (421)
T ss_dssp CTT----CCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEEC--GGGGGGTSCCGGGGTCS
T ss_pred ccc----cCcchhccccC---CCceEEEEcCCCcceeEec-chHHHHHHHHhcCCceEecc--cccccceeccccccCCc
Confidence 642 24566666676 89999999999 6888888 89999999999999999994 4553 334789999999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
|++.|+.|.+++. +.--+|.++.+++.
T Consensus 199 iVvhS~TKyl~GH---sD~l~G~vv~~~~~ 225 (421)
T d2ctza1 199 LVTHSLTKWVGGH---GAVIAGAIVDGGNF 225 (421)
T ss_dssp EEEEETTTTTTCS---SCCCCEEEEECSCS
T ss_pred EEEEechhhccCC---CCeEEEEEEcCCcc
Confidence 9999999999853 23356888877643
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.60 E-value=8.4e-16 Score=142.59 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=130.6
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHhCCCe--eeE--eeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 22 PFIPQDQARGYEQLIGELETDLCEITGYDK--ISF--QPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 22 py~p~e~sqG~l~~~~e~~~~l~~l~g~~~--~~~--~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
.|.| ++|..++++++.+++.+..+... ..+ ..+.++ .+..+....++.++ ++||.|++++|.|+.+.
T Consensus 66 ~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~-----~pGd~Vlv~~P~y~~y~ 137 (401)
T d7aata_ 66 EYLP---IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-----KFSRDVYLPKPSWGNHT 137 (401)
T ss_dssp CCCC---TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-----TTCCEEEEEESCCTTHH
T ss_pred CCCC---CCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhc-----CCCceEEEecCCCcchh
Confidence 4555 78999999999998877655321 122 222222 22222223333332 78999999999999999
Q ss_pred HHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|.+++.+|+.+ ++..|++.+++.+....++++++++++| ||||.. .+.+++|.++|++++++++.|.++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y 217 (401)
T d7aata_ 138 PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY 217 (401)
T ss_dssp HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred hHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccc
Confidence 99999999999999854 3567999999998765678999999999 699987 236999999999999999999986
Q ss_pred c-cccccc-CCC------CccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 M-NAQVGL-CRP------GDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~-~~~~~~-~~p------~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. ...... ..+ .....+ +++.++.|+++. .|+|+|++.++.++.+.+
T Consensus 218 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~----~G~RiG~~~~~~~~~~~~ 272 (401)
T d7aata_ 218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGL----YGERAGAFTVICRDAEEA 272 (401)
T ss_dssp TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC----GGGCEEEEEEECSSHHHH
T ss_pred hhhhcCCcccchhhhhhhhhhhcccceeEecccccee----eccccceeecchHHHHHH
Confidence 3 111110 000 011122 455555666654 499999999998766543
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=6e-15 Score=135.14 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=132.6
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH
Q psy7357 22 PFIPQDQARGYEQLIGELETDLCEITGYDK--ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 22 py~p~e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~ 98 (302)
-|.| .+|..++++++.+.+.+..|.+. .++..++|+ +|...++.++. ++||.|++++|.|+.+...
T Consensus 60 ~Y~~---~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~vlv~~P~y~~~~~~ 128 (375)
T d1o4sa_ 60 KYTD---PRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--------DPGDEVIVFSPVWVSYIPQ 128 (375)
T ss_dssp CCCC---TTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHH
T ss_pred CCCC---CcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh--------CCCCEEEEccCccccchhh
Confidence 3555 68999999999999998888654 455556665 44433333332 6899999999999888888
Q ss_pred HHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 99 AQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~ 173 (302)
....+..+..++.++ +...|.+.+++... +++++++++|| ||||..- +++++|.++|++++++++.|.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~ 205 (375)
T d1o4sa_ 129 IILAGGTVNVVETFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS 205 (375)
T ss_dssp HHHTTCEEEEEECCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred hhccccccccccccccccccchhHHHHHhhc---cCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcc
Confidence 888899999988865 45778998888776 78999999999 5999872 2689999999999999999987532
Q ss_pred cccccC------CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 174 AQVGLC------RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 174 ~~~~~~------~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...... .++..+-=+++.+..|+|+. .|.|+|+++++++..+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l----~G~R~G~~~~~~~~~~~~ 255 (375)
T d1o4sa_ 206 LVYTDEFTSILDVSEGFDRIVYINGFSKSHSM----TGWRVGYLISSEKVATAV 255 (375)
T ss_dssp SBCSSCCCCHHHHCSSSTTEEEEEESTTTTTC----GGGCCEEEECCHHHHHHH
T ss_pred ccccccccccccccCCCCCEEEEeechhhccC----Cccccccccccccchhhh
Confidence 111110 01222323566666676654 499999999987665443
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.60 E-value=1.1e-14 Score=134.64 Aligned_cols=165 Identities=18% Similarity=0.130 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
.-...+++++++|-|.+.+.+ ..||-.|..++++++. ++||+|++++..||..... ....|+++.++
T Consensus 67 Pt~~~LE~~la~LEgg~~a~~-~sSGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 137 (398)
T d1qgna_ 67 PTTVVLEEKISALEGAESTLL-MASGMCASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 137 (398)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE-ESCHHHHHHHHHHHHS--------CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCceEEE-ecCcchHHHHHHhhcc--------cccccccccccccchhhhhhcccccccccccccc
Confidence 567889999999999887644 5678766655555544 6899999999988766543 34678888888
Q ss_pred ecCCCCCCCHHHHHH-HHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 110 SVRKDGTIDFSDLET-KVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~-~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+. .|.++.++ .++ ++|++|+++.| |++..+. |+++|+++||++|++++||. .++...+.+|-++|+|
T Consensus 138 ~~-----~~~~~~~~~~~~---~~t~~v~~EspsNP~l~v~-Di~~ia~ia~~~g~~~vVDn--T~atP~~~~Pl~~GaD 206 (398)
T d1qgna_ 138 DP-----ADVGALELALNQ---KKVNLFFTESPTNPFLRCV-DIELVSKLCHEKGALVCIDG--TFATPLNQKALALGAD 206 (398)
T ss_dssp CS-----SCHHHHHHHHHH---SCEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEEC--TTTCTTTCCTTTTTCS
T ss_pred cc-----cchhhhhhhhcc---ccceEEEccCccccccccc-hHHHHHHHHhhcCCEEEecc--eeeccccCCchhhCCC
Confidence 74 24454444 455 89999999999 6877777 89999999999999999995 4565566789999999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
||+.|+.|.+++.- .--.|.+..++++.+++
T Consensus 207 iVihS~TKy~~Ghs---dv~~G~v~~~~~~~~~~ 237 (398)
T d1qgna_ 207 LVLHSATKFLGGHN---DVLAGCISGPLKLVSEI 237 (398)
T ss_dssp EEEECTTTTTTCSS---SCCCEEEEECHHHHHHH
T ss_pred EEEEechhhcCccc---ceeehhhcchhhhhhhh
Confidence 99999999998542 33457777776655443
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.59 E-value=9.3e-15 Score=132.99 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-CC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-DG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~-~g 115 (302)
.++++.+++.+|++..++..++|++..... .+... . ++.+++..+.++.+.......+.+++.+|++. ++
T Consensus 60 ~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~--~~~~~------~-~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~ 130 (355)
T d1lc5a_ 60 FHLHQALARHHQVPASWILAGNGETESIFT--VASGL------K-PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADG 130 (355)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHH--HHHHH------C-CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHhCCCHHHEEecccHHHHHHH--HHhhh------c-cccccccCCccceeccccccccccceeeeeeccCC
Confidence 468888999999998888888887533222 22211 2 33445555667667777778899999999864 34
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccccccc----CCCCccCCcE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGL----CRPGDYGSDV 188 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~----~~p~~~gaDi 188 (302)
..+.+++++.+. +++++|+++|| |++|..- +++++|.++|+++++++++|.++.--...- ......+-.+
T Consensus 131 ~~~~~~~~~~~~---~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i 207 (355)
T d1lc5a_ 131 WQLTDAILEALT---PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIW 207 (355)
T ss_dssp TCCCTTHHHHCC---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEE
T ss_pred ccceeeeeeccc---cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccce
Confidence 333356667666 78999999999 4899762 268899999999999999999863111100 0111222246
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
++.+.+|+|+ +.|.|+|+++++++
T Consensus 208 ~~~S~SK~~~----l~GlR~G~~i~~~~ 231 (355)
T d1lc5a_ 208 VLRSLTKFYA----IPGLRLGYLVNSDD 231 (355)
T ss_dssp EEEESTTTTT----CTTTCCEEEECCCH
T ss_pred eecccccccc----cccccccceeccch
Confidence 6666666665 45999999998764
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=8.4e-15 Score=135.47 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
.-...+++.+++|-|.+.+.+ ..||-.|..++++++. ++||+||+++..||..... ....|+++..+
T Consensus 58 Pt~~~le~~la~LEg~~~a~~-~~SGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~ 128 (391)
T d1cl1a_ 58 LTHFSLQQAMCELEGGAGCVL-FPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWF 128 (391)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred hhHHHHHHHHHHHhCCccEEE-eccccceeeehhhccc--------CCCCeEEEecccccchhhhhhhcccccccccccc
Confidence 567889999999999887654 4678766656666654 6899999999998866543 34678999888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCCCccCC
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.. .|.++++++++ ++|++|+++.| |++..+. |+++|+++|+++ |++++||. .++...+.+|-++|+
T Consensus 129 d~-----~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~-Di~~i~~~a~~~~~g~~~vVDn--T~atP~~~~Pl~~Ga 197 (391)
T d1cl1a_ 129 DP-----LIGADIVKHLQ---PNTKIVFLESPGSITMEVH-DVPAIVAAVRSVVPDAIIMIDN--TWAAGVLFKALDFGI 197 (391)
T ss_dssp CT-----TCGGGGGGTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHCTTCEEEEEC--TTTTTTSSCGGGGTC
T ss_pred cC-----ccccccccccc---cccceeeecccCccccccc-ccHHHHHHHHhccCCcEEEEec--cccchhhhccccccc
Confidence 75 36788888887 89999999999 6777777 899999999875 99999995 456666678999999
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
||++.|+.|++++. +.--+|.++.++++.+++
T Consensus 198 DivvhS~TKy~~Gh---sdvlgG~vv~~~~~~~~~ 229 (391)
T d1cl1a_ 198 DVSIQAATKYLVGH---SDAMIGTAVCNARCWEQL 229 (391)
T ss_dssp SEEEEETTTTTTCS---SSCCCEEEEECTTTHHHH
T ss_pred ceEEeecchhcccc---ccccccceeccccccccc
Confidence 99999999999853 234567888887766554
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.9e-15 Score=140.93 Aligned_cols=178 Identities=19% Similarity=0.175 Sum_probs=131.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
++|..++++.+.+.+.+.+|.+. .++..++|+ ++...++.++. ++++.|+++++.++.+...+...|.
T Consensus 63 ~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~--------~~g~~vlv~~p~~~~y~~~~~~~g~ 134 (418)
T d1w7la_ 63 TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGG 134 (418)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc--------cCCceeeccccccchhHHHHHHcCC
Confidence 78999999999999999999874 357777777 44433333332 6899999999999999999999999
Q ss_pred EEEEeecCC------------CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEec
Q psy7357 105 SVEPVSVRK------------DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ~v~~i~~~~------------~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~ 169 (302)
+++.++.++ +..+|.+++....+ ++++++++++| |++|.. .+++++|.++|+++++++|.|.
T Consensus 135 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De 211 (418)
T d1w7la_ 135 RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDE 211 (418)
T ss_dssp EEEEEECEECC---CCSEEGGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EeeccccccccccccccccccCcccchhhhhcccc---ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhh
Confidence 999888652 23567877777766 88999999999 499976 2269999999999999999999
Q ss_pred CCcc-ccccc--CCC---CccC-CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 170 ANMN-AQVGL--CRP---GDYG-SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 170 a~~~-~~~~~--~~p---~~~g-aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.. ....- .++ .+.. --+++.+..|+++.| |.|+|++++++++++.+
T Consensus 212 ~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p----G~RvG~~v~~~~~~~~l 266 (418)
T d1w7la_ 212 VYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT----GWKVGWVLGPDHIMKHL 266 (418)
T ss_dssp TTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHH
T ss_pred hhHHhhcCCCCCCCHHHccccccccceecccCccccCC----CCcccccccchhhhhhh
Confidence 8631 11110 111 1111 235666667777655 89999999988765544
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.58 E-value=1.3e-14 Score=135.18 Aligned_cols=190 Identities=10% Similarity=0.067 Sum_probs=131.5
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
-|.|+| ++|..++++++.+.+.+..+... .......|+.+.......+.... .+||.|+++++.|+.+
T Consensus 66 ~~~Y~p---~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~gd~Vlip~P~~~~y 137 (412)
T d1yaaa_ 66 NHEYLG---ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-----FPDKLVYLSKPTWANH 137 (412)
T ss_dssp CCCCCC---TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-----CTTCCEEEEESCCTTH
T ss_pred CCCCCC---CCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhcc-----CCCCEEecccccCchh
Confidence 356777 89999999998888866554211 11222223322211111122221 6899999999999999
Q ss_pred HHHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecC
Q psy7357 96 PASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a 170 (302)
...+...|.+++.+|... +...|.+.+++.+.+.+++++++++++| ||||.. .+.+++|.++|++++++++.|.+
T Consensus 138 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~ 217 (412)
T d1yaaa_ 138 MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTA 217 (412)
T ss_dssp HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecce
Confidence 999999999999999754 3467999999998876677888999999 699986 22699999999999999999998
Q ss_pred Cc-ccccccC-----------CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 171 NM-NAQVGLC-----------RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 171 ~~-~~~~~~~-----------~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+. ....... .+....--+++.++.|+++.| |+|+|+++++.+.++.+
T Consensus 218 Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~~~~ 276 (412)
T d1yaaa_ 218 YQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMY----GERVGCFHLALTKQAQN 276 (412)
T ss_dssp CTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCG----GGCEEEEEEECCSCTTH
T ss_pred eeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccC----cCceEEEEEchhhhhhH
Confidence 63 1111100 001111126666667777655 99999999998877654
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.57 E-value=3.2e-15 Score=138.35 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=131.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
..|.+ .+|..++++.+.+.+.+.+|.+ ..++..++|+ ++...++.++. +++|.|++++|.|..+..
T Consensus 65 ~~Y~~---~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~--------~~gd~v~~~~P~y~~~~~ 133 (403)
T d1wsta1 65 LQYGT---TKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL--------NPGDPIVVEAPTYLAAIQ 133 (403)
T ss_dssp HSCCC---SSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHH
T ss_pred cCCCC---CcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh--------hcCCccccCCCcchhhhH
Confidence 34666 7899999999999999888864 4567777776 44433333332 689999999999988888
Q ss_pred HHHhCCCEEEEeecCCCCCC---CHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCC
Q psy7357 98 SAQMAGMSVEPVSVRKDGTI---DFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~i---D~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~ 171 (302)
.+...|.+++.+|.++++.- ..+..++...+.++.+.++++.+| |++|.+- +++++|.++|+++|+++|.|.++
T Consensus 134 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y 213 (403)
T d1wsta1 134 AFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPY 213 (403)
T ss_dssp HHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhhccccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccch
Confidence 88999999999998764421 122222333333456677778888 5899762 26889999999999999999987
Q ss_pred cc-cccc-----cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 172 MN-AQVG-----LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 172 ~~-~~~~-----~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.. ...+ +......+--+++.+.+|+++ | |.|+|++++++++++.+.
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~----G~RiG~~i~~~~~i~~~~ 265 (403)
T d1wsta1 214 SELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA-P----GFRIGWVAAHPHLIRKME 265 (403)
T ss_dssp TTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-G----GGCCEEEEECHHHHHHHH
T ss_pred hheecCCCCCCcccccCCCCcEEEEccccceec-C----cccccccccchHHHHHHH
Confidence 31 1111 111123445678888888875 5 899999999987776543
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.56 E-value=1.4e-14 Score=131.23 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=123.0
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRK 113 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~ 113 (302)
.+++++++|-|.+.+.+ ..||-.|..++++++. ++||+|++++..||.... .....|+++.+++.
T Consensus 2 aLE~~la~Leg~~~a~~-~sSGMaAi~~~l~~ll--------~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~-- 70 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAA-TASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred HHHHHHHHHhCCCeEEE-ECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecc--
Confidence 57889999999887644 4678766645555554 789999999998875543 34578999999876
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHH-HHhCCEEEEecCCcccccccCCCCccCCcEEEe
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELI-HEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia-~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~ 191 (302)
.|++.++++++ ++|+.|+++.| |++..+. |++++++++ |++|++++||. .++...+.+|-++|+||++.
T Consensus 71 ---~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~-d~~~~~~~~a~~~~~~~vVDn--T~atp~~~~pl~~GaDiVv~ 141 (331)
T d1pffa_ 71 ---AVPGNIEKHLK---PNTRIVYFETPANPTLKVI-DIEDAVKQARKQKDILVIVDN--TFASPILTNPLDLGVDIVVH 141 (331)
T ss_dssp ---TSTTHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSSSCEEEEEC--TTTHHHHCCGGGGTCSEEEE
T ss_pred ---cchhhHhhhcc---cccceeeeecccccccccc-cchhhhhhhhcccCceEEeec--cccccccccccccCCCEEEe
Confidence 37889999998 89999999998 5777777 899999885 67899999995 45555557899999999999
Q ss_pred CCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
|+.|++++. +..-.|.++++++
T Consensus 142 S~TKy~~Gh---~d~~~G~v~~~~~ 163 (331)
T d1pffa_ 142 SATKYINGH---TDVVAGLVCSRAD 163 (331)
T ss_dssp ETTTTTSSS---SSCCCEEEEECHH
T ss_pred cchhhcCCC---Ccccccccccccc
Confidence 999999843 3346788888754
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.55 E-value=2.1e-14 Score=132.64 Aligned_cols=166 Identities=13% Similarity=0.201 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..+.++++++++++|.+.+ +.++||+.|..++++++. .++||+|++|+..+++....+...|++++.+++++
T Consensus 34 ~~v~~fE~~~a~~~g~~~~-v~~~SGt~Al~lal~~l~-------~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~ 105 (384)
T d1b9ha_ 34 DEVNSFEREFAAHHGAAHA-LAVTNGTHALELALQVMG-------VGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDA 105 (384)
T ss_dssp SHHHHHHHHHHHHTTCSEE-EEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHHCcCeE-EEeCCHHHHHHHHHHHcC-------CCCCCEEEEeccccccccccccccccccccccccc
Confidence 3688999999999999987 567899988766666542 26899999999998888888889999999999876
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
++.+|++.+++.++ ++|++|++++ .+|... |+.+|.++|+++|+++|-|++|..+.-.- ..+|.+| |+.++
T Consensus 106 ~~~~~d~~~~~~~i~---~~tk~i~~~~--~~g~~~-d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g-~~~~~ 178 (384)
T d1b9ha_ 106 ATYNLDPEAVAAAVT---PRTKVIMPVH--MAGLMA-DMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF 178 (384)
T ss_dssp TTCCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred cccccchhhhccccc---cccccccccc--cccccc-ccccchhhhhhhhhhhhhhhceecccccCCEecCccc-cccee
Confidence 57899999999998 8999988765 668777 89999999999999999999985433211 2345555 66555
Q ss_pred C--CCcccCCCCCCCCCcceeEEEe-CCCCCC
Q psy7357 192 N--LHKTFCIPHGGGGPGMGPIGVK-SHLAPF 220 (302)
Q Consensus 192 ~--~hK~l~~p~~~gGp~~G~l~~~-~~l~~~ 220 (302)
| .+|.++ ...+|+++++ +++.++
T Consensus 179 Sf~~~K~i~------~g~GG~i~t~~~~~~~~ 204 (384)
T d1b9ha_ 179 SFQNGKLMT------AGEGGAVVFPDGETEKY 204 (384)
T ss_dssp ECCTTSSSC------SSSCEEEEECTTCHHHH
T ss_pred ccccccccc------ccccchhhhhhHHHHHH
Confidence 5 455543 2345788876 454443
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.54 E-value=6.7e-14 Score=131.90 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR- 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~- 112 (302)
+.+.|+++.+++++|++.+ +.+.||+.|+++++.+++.+....+. .+..++.+...|.+........|..++.++.+
T Consensus 75 ~~~~~le~~~a~l~g~~~~-~~~~sGt~A~~~a~~~~~~~g~~~~~-~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~ 152 (465)
T d1ax4a_ 75 RNYYDLKDKAKELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGK-AKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 152 (465)
T ss_dssp HHHHHHHHHHHHHHCCCEE-EEESSHHHHHHHHHHHHHHHHHHTTC-CSSCEEEESSCCHHHHHHHHHTTCEEEECBCGG
T ss_pred hHHHHHHHHHHHHHCCCEE-EECCCcHHHHHHHHHHHHHHHHhcCC-CCCeEEeccchhhhhHHHHHHcCCeeecccccc
Confidence 5678999999999999986 56789999998999988877655543 33444555554445555677888888776432
Q ss_pred ---------CCCCCCHHHHHHHHhccCC-CeEEEEEecCCCc-e-ec--cccHHHHHHHHHHhCCEEEEecCCcccccc-
Q psy7357 113 ---------KDGTIDFSDLETKVKKNKE-TLSCLMITYPSTF-G-VF--EENITDVCELIHEHGGQVYLDGANMNAQVG- 177 (302)
Q Consensus 113 ---------~~g~iD~~~l~~~i~~~~~-~t~~V~i~~Pn~~-G-~~--~~di~~I~~ia~~~g~llivD~a~~~~~~~- 177 (302)
..|.+|+++++++|+++.+ .+++++++.+|.+ | .. ..++++|+++|++||+++|+|+++......
T Consensus 153 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~ 232 (465)
T d1ax4a_ 153 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYF 232 (465)
T ss_dssp GGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred cCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcc
Confidence 2578999999999986544 4666666665533 3 22 126899999999999999999998532210
Q ss_pred -c-CCCCcc-------------CCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 178 -L-CRPGDY-------------GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 178 -~-~~p~~~-------------gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
. ..++.+ .+|+++++.||.+ +||+.|+++++++
T Consensus 233 ~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~------~~~~~g~l~~~~~ 280 (465)
T d1ax4a_ 233 IKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP------LLNIGGLVAIRDN 280 (465)
T ss_dssp HHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT------CCSSCEEEEESSC
T ss_pred cccccccccccchhhhccccccccceeEeecccCc------ccccceeEeecch
Confidence 0 111111 1588888877754 4788899998864
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.54 E-value=1.4e-13 Score=125.93 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++.+|.+.+ +.++||+.|...++.++. .++||+|++|+..|..........|++++.+++++
T Consensus 21 ~~~~~fE~~~~~~~~~~~~-~~~~SgT~Al~lal~~l~-------~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~ 92 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSENA-LALNSATAALHLALRVAG-------VKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDE 92 (374)
T ss_dssp HHHHHHHHHHHHHHCCSEE-EEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHHCcCeE-EEeCCHHHHHHHHHHHcC-------CCCcCEEEeCCcchHhhHHHHhhccceeEeccccc
Confidence 4688999999999999975 567889987766665542 26799999999998888888889999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEeC
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHLN 192 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~~ 192 (302)
+...+..+.++......++|++|++++ .+|... |+++|.++|+++|++||-|+||..+.--- ...|.+| |+.++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~aii~~~--~~G~~~-d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~g-d~~~fS 168 (374)
T d1o69a_ 93 TYNIDVDLLKLAIKECEKKPKALILTH--LYGNAA-KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFG-EFGVYS 168 (374)
T ss_dssp TSSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSS-SEEEEE
T ss_pred ccccccccccccchhcccccccccccc--cccchh-hhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCC-ceEEEe
Confidence 654443333333332237888999887 568888 89999999999999999999985433211 2345665 999998
Q ss_pred CCcccCCCCCCCCCcceeEEEeC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
.|.+ ++.+.| ++|+++++.
T Consensus 169 f~~~--K~l~tg--eGG~i~tnn 187 (374)
T d1o69a_ 169 YNGN--KIITTS--GGGMLIGKN 187 (374)
T ss_dssp CCTT--SSSCCS--SCEEEEESC
T ss_pred ccCc--cccccc--cceeehhhh
Confidence 7642 233333 457788763
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.53 E-value=2.3e-14 Score=135.37 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=124.1
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
|.+.| ...+.++++.+++++|.+.+ +.+.||+.|+..++.++. ++||+|+.... +.++.......|+..
T Consensus 69 d~Y~~-dpt~~~lE~~~a~l~G~e~a-l~~~SGt~An~~a~~~l~--------~~Gd~Vi~~~~-f~~~~~~i~~~g~~~ 137 (456)
T d1c7ga_ 69 EAYAG-SENFYHLEKTVKELFGFKHI-VPTHQGRGAENLLSQLAI--------KPGQYVAGNMY-FTTTRFHQEKNGATF 137 (456)
T ss_dssp CCSSS-CHHHHHHHHHHHHHHCCSEE-EEESSHHHHHHHHHHHHC--------CTTEEEEESSC-CHHHHHHHHHTTEEE
T ss_pred hhccC-CchHHHHHHHHHHHhCCCeE-EECCCHHHHHHHHHHHhc--------CCCCeEecCcc-hHHHHHHHHHcCcee
Confidence 34444 46789999999999999987 567889988866666543 68888776543 222334455678887
Q ss_pred EEeecC----------CCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCc-eec---cccHHHHHHHHHHhCCEEEEecC
Q psy7357 107 EPVSVR----------KDGTIDFSDLETKVKKNK-ETLSCLMITYP-STF-GVF---EENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 107 ~~i~~~----------~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~-G~~---~~di~~I~~ia~~~g~llivD~a 170 (302)
+.+..+ .++.+|+++|+++|+++. +++..+++++| |.. |.. + ++++|+++|+++|+++++|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~-~l~~i~~~a~~~~~~~~~D~a 216 (456)
T d1c7ga_ 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMA-NMRAVHEMASTYGIKIFYDAT 216 (456)
T ss_dssp EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHH-HHHHHHHHHHHHTCCEEEECT
T ss_pred eeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHH-HHHHHHHHHHHcCCEEEEEcc
Confidence 766542 246899999999998653 46778889988 443 333 4 689999999999999999999
Q ss_pred Ccccccc--------c--CCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 171 NMNAQVG--------L--CRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 171 ~~~~~~~--------~--~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
+.+.... . .++.+ ..+|++++++||.++ +|.+|++++++ ++.+++
T Consensus 217 ~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~------~~~GG~i~~~~~~l~~~~ 278 (456)
T d1c7ga_ 217 RCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCL------VNIGGFLCMNDEEMFSAA 278 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC------CSSCEEEEESCHHHHHHH
T ss_pred hhhcchhhhcccccccCCCChhhhccccccccccEEEecccccc------ccceeEEEcCCHHHHHHH
Confidence 7532110 0 01100 137999999999876 46679999885 454444
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=7e-15 Score=136.91 Aligned_cols=184 Identities=16% Similarity=0.129 Sum_probs=129.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC---eeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD---KISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+.|.+ ++|..++++.+.+.+.+..|.+ ..++..++|++ +.. +++..+. ++||.|+++++.|+.+.
T Consensus 74 ~~Y~~---~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~---~~~~~~~-----~~Gd~Vlv~~P~y~~~~ 142 (420)
T d1vp4a_ 74 LQYST---TEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALD---LIGKLFL-----DDESYCVLDDPAYLGAI 142 (420)
T ss_dssp TSCCC---TTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHH---HHHHHHC-----CTTCEEEEEESCCHHHH
T ss_pred cCCCC---CcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHH---HHHHhhh-----ccccccccccccccchh
Confidence 34665 7899999999999999988864 45777777874 332 2333221 68999999999988888
Q ss_pred HHHHhCCCEEEEeecCCCCCCCHHHHHHHHhcc------CCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEE
Q psy7357 97 ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKN------KETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~------~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~lliv 167 (302)
..++..|.+++.+|.++++ +|++.++..+.+. ++.+.++++.+| |++|.+ ..++++|.++|+++++++|.
T Consensus 143 ~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~ 221 (420)
T d1vp4a_ 143 NAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 221 (420)
T ss_dssp HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhhcccccccccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccc
Confidence 8889999999999986644 7888877765321 123455567777 689976 22689999999999999999
Q ss_pred ecCCcc-ccccc-CCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 168 DGANMN-AQVGL-CRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 168 D~a~~~-~~~~~-~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|.++.- ....- ..+ ...+.-+++.++.|++. | |.|+|++++++++++.+
T Consensus 222 De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~----G~RiG~~~~~~~~i~~l 276 (420)
T d1vp4a_ 222 DDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-P----GLRIGMVAGSKEFIRKI 276 (420)
T ss_dssp ECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-G----GGCEEEEECCHHHHHHH
T ss_pred cchhhhccccCcccccccccccccceeEEeccccccc-c----ccccccccccchhhhhh
Confidence 998631 11111 111 11222355555666553 4 89999999998877655
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.53 E-value=9.6e-14 Score=128.37 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~ 108 (302)
-.-...+++.+++|-|.+.+.+ ..||..|..++++++. .++|+|++++..||.... .....|+++.+
T Consensus 58 nPT~~~le~~la~LEg~~~a~~-~sSGmaAi~~~~l~l~--------~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~ 128 (394)
T d1e5ea_ 58 NPTVSNLEGKIAFLEKTEACVA-TSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQVDF 128 (394)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHhCCcceee-eccchHHHHHHHHhhc--------ccccccccccceeehhhHhHHHHhhccceeeec
Confidence 3677889999999999887644 4578666645555544 689999999998876543 34578999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHH-HhCCEEEEecCCcccccccCCCCccCC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIH-EHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~-~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
++. .|+++++++++ ++|++|+++.| |++..+. |++++.++++ ++|+++++|. .++...+.+|-++|+
T Consensus 129 ~d~-----~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~-Di~~~~~~~~~~~g~~vvvDn--T~atP~~~~Pl~~Ga 197 (394)
T d1e5ea_ 129 INT-----AIPGEVKKHMK---PNTKIVYFETPANPTLKII-DMERVCKDAHSQEGVLVIADN--TFCSPMITNPVDFGV 197 (394)
T ss_dssp ECT-----TSTTHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSTTCEEEEEC--TTTCTTTCCGGGGTC
T ss_pred cCC-----CCHHHHHHhhc---ccccEEEEeccCCcceeee-hhhhhhhccccccCeEEEecC--cccCcccCCchhcCC
Confidence 986 36788999998 89999999998 6887788 8999988776 4789999995 455556678999999
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
|||+.|+.|++++. +..-.|.++++++..
T Consensus 198 DiVvhS~TKy~~Gh---sDv~~G~v~~~~~~~ 226 (394)
T d1e5ea_ 198 DVVVHSATKYINGH---TDVVAGLICGKADLL 226 (394)
T ss_dssp SEEEEETTTTTTCS---SCCCCEEEEECHHHH
T ss_pred CEEEechhhhcCCC---cccccccccchhhHH
Confidence 99999999999854 234578888876543
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.2e-14 Score=132.50 Aligned_cols=187 Identities=12% Similarity=0.032 Sum_probs=129.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC----ee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD----KI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~----~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
|.|.| ++|..++++.+.+.+.+..+.. .. .+...+|+.+. +....+...+ +++|.|+++++.|+.+
T Consensus 63 ~~Y~p---~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~-----~~gd~Vlvp~P~y~~y 133 (396)
T d2q7wa1 63 KNYLG---IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL-RVAADFLAKN-----TSVKRVWVSNPSWPNH 133 (396)
T ss_dssp CCCCC---TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH-HHHHHHHHHH-----SCCCEEEEEESCCTHH
T ss_pred CCCCC---CcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH-HHHHHHHhhc-----ccceEEEEecCCCccc
Confidence 45666 7899999999888887655431 22 22233333322 2222222222 6899999999999999
Q ss_pred HHHHHhCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecC
Q psy7357 96 PASAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a 170 (302)
...++..|.+++.+|...+ +..+.+.+++...+..+++.++++++| ||||.. .+.+++|.++|++++++++.|.+
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~ 213 (396)
T d2q7wa1 134 KSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFA 213 (396)
T ss_dssp HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred hHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecc
Confidence 9999999999999998643 346888888887766678899999999 699986 22689999999999999999998
Q ss_pred Cc-ccccccCC-------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 171 NM-NAQVGLCR-------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 171 ~~-~~~~~~~~-------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+. .....-.. +....-.+++.++.|+++.| |+|+|++.+.+...+.
T Consensus 214 Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~~ 267 (396)
T d2q7wa1 214 YQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY----NERVGACTLVAADSET 267 (396)
T ss_dssp CTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHH
T ss_pred ccccccCCccCchHhhhhhhhccccccccccccccccc----CCCccccccchhHHHH
Confidence 73 11111000 01112246666667877755 9999999998776544
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.5e-13 Score=127.62 Aligned_cols=171 Identities=18% Similarity=0.179 Sum_probs=126.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
-|..+...++++.+++++|++.+. ..+||.+|+++++.++. .++|.|++....|.+....+...+.++..+
T Consensus 86 ~g~~~~~~~lE~~lA~~~g~e~al-~~~SG~~An~~~i~~l~--------~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~ 156 (401)
T d1fc4a_ 86 CGTQDSHKELEQKLAAFLGMEDAI-LYSSCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRLCKAKRYRY 156 (401)
T ss_dssp HCCBHHHHHHHHHHHHHHTCSEEE-EESCHHHHHHTTHHHHC--------CTTCEEEEETTCCHHHHHHHHTSCSEEEEE
T ss_pred ccCcHHHHHHHHHHHHhhcCCceE-EecchhhhhHHHHHHhc--------CCCcEEEeCCcchHHHHccccccCceEEEE
Confidence 445567789999999999998764 56789888766666554 678999998888887777777788888877
Q ss_pred ecCCCCCCCHHHHHHHHhc---cCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-C----
Q psy7357 110 SVRKDGTIDFSDLETKVKK---NKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC-R---- 180 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-~---- 180 (302)
+. .|++++++.+++ +.+...+|++.+- +..|.+. |+++|.++|+++|+++++|.+|..+..+.. .
T Consensus 157 ~~-----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~-~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~ 230 (401)
T d1fc4a_ 157 AN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA-NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHE 230 (401)
T ss_dssp CT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHH
T ss_pred cC-----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchh-hhhHHHHHHhhcCcEEEehhhhccccccCCCCccch
Confidence 64 477777776643 3355566666653 4568788 799999999999999999999864432210 0
Q ss_pred -CC-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 181 -PG-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 181 -p~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+ ...+|+++++++|.|+ |+.+|+++.++++++.+
T Consensus 231 ~~~~~~~~dii~~tl~Ka~g------g~~Gg~v~g~~~~~~~l 267 (401)
T d1fc4a_ 231 YCDVMGRVDIITGTLGKALG------GASGGYTAARKEVVEWL 267 (401)
T ss_dssp HTTCTTCCSEEEEESSSTTC------SSSCEEEEECHHHHHHH
T ss_pred hccCCCCCeEEEeecccccc------cCCcccccCCHHHHHHH
Confidence 01 1137999998888764 67789999998877655
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.52 E-value=7.9e-14 Score=127.81 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=128.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
++| +.+.++++.+++.+|.+.+ +.++||+.|..++++++.. +..++++|++|...+.+........|++++.
T Consensus 28 ~~G--~~v~~fE~~~~~~~g~k~a-i~~~Sgt~Al~~al~al~~-----~~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~ 99 (371)
T d2fnua1 28 TQG--KRSLLFEEALCEFLGVKHA-LVFNSATSALLTLYRNFSE-----FSADRNEIITTPISFVATANMLLESGYTPVF 99 (371)
T ss_dssp SSS--HHHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHSSC-----CCTTSCEEEECSSSCTHHHHHHHHTTCEEEE
T ss_pred cCC--HHHHHHHHHHHHHHCcCeE-EEEecHHHHHHHHHHHhcc-----cCCCCCeeecccccccccceeeeccCccccc
Confidence 455 4689999999999999986 5678898877566555431 1123458999998888777788899999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-cCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-LCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~~~p~~~gaD 187 (302)
++++++..++.+++++.++ ++|++|++++ .+|... |+++|.++|+++|+++|-|+||..+.-. -...|.+| |
T Consensus 100 vDi~~~~~~~~~~~~~~~~---~~t~avi~vh--~~G~~~-~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g-~ 172 (371)
T d2fnua1 100 AGIKNDGNIDELALEKLIN---ERTKAIVSVD--YAGKSV-EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFA-L 172 (371)
T ss_dssp CCBCTTSSBCGGGSGGGCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSS-S
T ss_pred ccccccccccchhhhhhcc---chhhcccccc--cccccc-ccccccccccccchhhccchhhccCceeccccCCccc-c
Confidence 9999888888888888887 8999999886 779888 8999999999999999999998653321 12345555 7
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPF 220 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~ 220 (302)
+.++|.|- .++...| ++|++++++ ++.++
T Consensus 173 ~~~~Sf~~--~K~l~~g--~GG~i~t~~~~~~~~ 202 (371)
T d2fnua1 173 ASVFSFHA--IKPITTA--EGGAVVTNDSELHEK 202 (371)
T ss_dssp EEEEECCT--TSSSCCS--SCEEEEESCHHHHHH
T ss_pred cccccccc--ccccccc--cceEEEeechhhhhh
Confidence 77776532 1232233 468888874 44443
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.2e-14 Score=134.44 Aligned_cols=189 Identities=14% Similarity=0.061 Sum_probs=130.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--eeeEeeCch--HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KISFQPNSG--AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~G--a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+.|.| ++|..++++++.+.+.+..+.+ ..++....| ..+..+..+.++.+. +++|.|++++|.|+.+.
T Consensus 64 ~~Y~p---~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-----~pgd~Vlv~~P~y~~y~ 135 (397)
T d3tata_ 64 SLYLP---MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-----FPESGVWVSDPTWENHV 135 (397)
T ss_dssp BCCCC---TTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHH-----CSSCCCEECSSCCTTHH
T ss_pred CCCCC---cccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhc-----CCCCcceecccCccccH
Confidence 34555 7899998888888776654432 122322222 221212222333222 68999999999999999
Q ss_pred HHHHhCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|.+++.+|++.+ +..|.+++.+.+...+++++++++.+| ||||.. .+.+++|.++|++++++++.|.++
T Consensus 136 ~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y 215 (397)
T d3tata_ 136 AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAY 215 (397)
T ss_dssp HHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSC
T ss_pred HHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhh
Confidence 999999999999999754 467999988888765677888889998 699986 236899999999999999999986
Q ss_pred c-ccccccC-CC-----CccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 M-NAQVGLC-RP-----GDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~-~~~~~~~-~p-----~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. .....-. .+ ...+.+ +++.++.|+++.| |+|+|++.+.....+.+
T Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~~~~ 269 (397)
T d3tata_ 216 QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY----GERVGGLSVMCEDAEAA 269 (397)
T ss_dssp TTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBT----TTCCBCCEEECSSTTHH
T ss_pred hhhccCCcccchhhhhhhhcCCceEEEecCccccccc----CccccccccchhHHHHH
Confidence 3 1111000 00 011122 6666677887765 99999999998776543
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.51 E-value=5.2e-14 Score=130.75 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=128.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCC----Ce-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGY----DK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~----~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
|.|.| .+|..++++++++++.+..+. +. ..+++.+++.+...+..++...+... .++||+|++++|.|+.|
T Consensus 68 ~~Y~p---~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~pGd~Vlv~~P~y~~y 143 (412)
T d1ajsa_ 68 HEYLP---ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGT-NNKDTPVYVSSPTWENH 143 (412)
T ss_dssp CCCCC---TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSS-SCCCSCEEEEESCCTHH
T ss_pred CCCCC---CCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhc-CCCCCEEEEeCCcchhh
Confidence 45666 799999999988888664442 22 23333333333322332322211111 26899999999999999
Q ss_pred HHHHHhCCCEEEEee-cC-C-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEec
Q psy7357 96 PASAQMAGMSVEPVS-VR-K-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~-~~-~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~ 169 (302)
....+..|++++.++ .. + ....|++.+++.+.+..++++++++++| ||||.+ .+.+++|.++|+++|++++.|.
T Consensus 144 ~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De 223 (412)
T d1ajsa_ 144 NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS 223 (412)
T ss_dssp HHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecH
Confidence 889999998866554 32 2 2357999988887765688899999999 699987 2369999999999999999999
Q ss_pred CCcc-ccccc--------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 170 ANMN-AQVGL--------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 170 a~~~-~~~~~--------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++.- ..... ..+....-.+++.++.|+++.| |+|+|++.+..+..+.
T Consensus 224 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~~ 279 (412)
T d1ajsa_ 224 AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY----NERVGNLTVVAKEPDS 279 (412)
T ss_dssp SCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCEEEEEEECSSHHH
T ss_pred hhhhhhcCCcccchhhhhhhhhhcccccccccccccccCC----CCCccccccchhHHHH
Confidence 8631 11110 0001112246666667777654 8999999998776544
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=1.2e-13 Score=127.70 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH----HhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA----QMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~----~~~g~~v~~ 108 (302)
-.-...+++.+++|-|.+.+. ...||..|. ++++++. .++|+|++++..||...... ...|.++..
T Consensus 54 nPT~~~lE~~la~LE~~~~a~-~~sSGmaAi-~~~l~~l--------~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~ 123 (393)
T d1n8pa_ 54 NPNRENLERAVAALENAQYGL-AFSSGSATT-ATILQSL--------PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSEEE-EESCHHHHH-HHHHHTS--------CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred ChHHHHHHHHHHHHhCCceEE-EecCchhHH-Hhhhhcc--------cCCCeeeeeeeecccchhhhhhhhhcccceeEE
Confidence 367889999999999988764 456775544 3333322 57889999988877654433 366777776
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHH----HhCCEEEEecCCcccccccCCCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIH----EHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~----~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
++ .|.++++++++ ++|++|+++.| |++..+. |+++|+++|| ++|++++||. .++...+.+|-+
T Consensus 124 ~~------~~~~~~~~~i~---~~t~lv~~EspsNP~l~v~-Di~~ia~~a~~~~~~~g~~lvVDn--T~atP~~~~Pl~ 191 (393)
T d1n8pa_ 124 TN------DLLNDLPQLIK---ENTKLVWIETPTNPTLKVT-DIQKVADLIKKHAAGQDVILVVDN--TFLSPYISNPLN 191 (393)
T ss_dssp ES------SHHHHHHHHSC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTTTTCEEEEEC--TTTHHHHCCGGG
T ss_pred ee------cchHHHHHHhh---hhcceeEecCcchhhhhcc-chhhhhhhhhhhcccCCceEEEec--CccCcccCCchh
Confidence 64 25678999998 89999999999 6887788 8999999999 6789999995 455555678999
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
+|+|||+.|+.|++++. +..-.|.++.++ ++.+++
T Consensus 192 ~GADiVvhS~TKyi~Gh---sDv~~G~v~~~~~~~~~~l 227 (393)
T d1n8pa_ 192 FGADIVVHSATKYINGH---SDVVLGVLATNNKPLYERL 227 (393)
T ss_dssp GTCSEEEEETTTTTTCS---SCCCCEEEEESCHHHHHHH
T ss_pred hCCCEEEEccccccCCC---CccccceeeecchhHHHHH
Confidence 99999999999999854 335568877764 344443
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=8.3e-13 Score=121.79 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=130.5
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
....|..+...++++.+++++|.+.+. ...+|.+|+.+++.++. .++|.|++....|.+.....+..+.++
T Consensus 76 r~~~g~~~~~~~lE~~LA~~~g~e~al-~~~SG~~an~~~i~al~--------~~~d~v~~d~~~h~si~~g~~~~~~~~ 146 (383)
T d1bs0a_ 76 GHVSGYSVVHQALEEELAEWLGYSRAL-LFISGFAANQAVIAAMM--------AKEDRIAADRLSHASLLEAASLSPSQL 146 (383)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHTCSEEE-EESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTSSSEE
T ss_pred ccccCcchHHHHHHHHHHHhcCCCceE-EecccchhhHHHHHhhc--------CCCceEEeeccccHHHhhccccCCCcc
Confidence 345677889999999999999998754 46778887766666554 678999988888877666677788888
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC---
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG--- 182 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~--- 182 (302)
+.++. .|++++++.+.+++++...|++... |..|.+. |+++|.++|+++|+++++|.+|..+..+-.-.+
T Consensus 147 ~~~~h-----nd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~-pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~ 220 (383)
T d1bs0a_ 147 RRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCW 220 (383)
T ss_dssp EEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHH
T ss_pred eEecc-----hHHHHHHHHhcccCCCceEEEecCCCCCCCccc-chhHHHHHHHhcCcEEEeecceeeeecCCcccchHH
Confidence 88775 5999999999877777788888876 4689998 799999999999999999999865543321111
Q ss_pred --ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 --DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 --~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....|+++.+..|.++ ..+|+++++.+..+.+
T Consensus 221 ~~~~~~~~~~~t~~ka~g-------~~Gg~v~~~~~~~~~l 254 (383)
T d1bs0a_ 221 LQKVKPELLVVTFGKGFG-------VSGAAVLCSSTVADYL 254 (383)
T ss_dssp HTTCCCSEEEEESSSTTS-------SCCEEEEECHHHHHHH
T ss_pred HcCCcccccccccccccc-------ccccccccchhHHHHH
Confidence 1235777776566554 3457788887666555
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.1e-13 Score=130.65 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhc-CCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQD-AHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g-~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
+.+.++++++++++|++.+ +.+.||+.|++.++.+++....... ..+...++.+...|++....+...|.+++.++.+
T Consensus 74 ~~~~~le~~~a~l~G~~~~-~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~ 152 (467)
T d2v1pa1 74 RSYYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIK 152 (467)
T ss_dssp HHHHHHHHHHHHHTCCSEE-EEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCT
T ss_pred chHHHHHHHHHHHHCCCEE-EECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccc
Confidence 5678999999999999986 5678999888888887765433221 1234455666666666667778899999988765
Q ss_pred C----------CCCCCHHHHHHHHhccC-CCeEEEEEecCC-Cc-eec---cccHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 113 K----------DGTIDFSDLETKVKKNK-ETLSCLMITYPS-TF-GVF---EENITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 113 ~----------~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn-~~-G~~---~~di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
. .+.+|+++|++.++++. +.++++++.+.+ .. |.. . ++++|+++|++||+++|+|+++.+...
T Consensus 153 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~-~l~~i~~ia~~~g~~l~~D~a~~~~~~ 231 (467)
T d2v1pa1 153 EAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLA-NLKAMYSIAKKYDIPVVMDSARFAENA 231 (467)
T ss_dssp TTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHH-HHHHHHHHHHHTTCCEEEECTTHHHHH
T ss_pred cccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHH-HHHHHHHHHHHcCCEEEEechhhhccc
Confidence 2 35789999999997654 356777777754 33 333 3 699999999999999999999854321
Q ss_pred cc---CCCC-------------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 177 GL---CRPG-------------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 177 ~~---~~p~-------------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.. ..++ .-.+|+++++.||.++ ||.+|+++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~------~~~gg~i~~~~~~ 282 (467)
T d2v1pa1 232 YFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM------VPMGGLLCMKDDS 282 (467)
T ss_dssp HHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC------CSSCEEEEECSGG
T ss_pred cccccccccccCCcccccchhhcccCCEEEecCCCCCC------CCCceeEEecchh
Confidence 10 0000 0137999999888765 6788999988654
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=1.4e-13 Score=126.71 Aligned_cols=187 Identities=9% Similarity=0.031 Sum_probs=128.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~ 98 (302)
|.|.| .+|..++++++.+++.+..+.. ...+++.+|+.+. +..+.+.... +++|.|+++++.++.|...
T Consensus 63 ~~Y~p---~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~-----~~gd~V~~p~p~~~~y~~~ 133 (394)
T d2ay1a_ 63 KTYAG---LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL-RQALELARMA-----NPDLRVFVSDPTWPNHVSI 133 (394)
T ss_dssp CCCCC---SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHH-HHHHHHHHHH-----CTTCCEEEEESCCHHHHHH
T ss_pred CCCCC---CCCCHHHHHHHHHHHhccccccccccceeccCchHHH-HHHHHHhhhc-----CCceEEEEecccccchHHH
Confidence 45666 7899999999998887655543 2344444444333 2222222221 6899999999999988889
Q ss_pred HHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc-
Q psy7357 99 AQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM- 172 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~- 172 (302)
++..|.+++.+|... ++..+.+++++......+++.++++++| ||||.. .+.+++|.++|++++++++.|.++.
T Consensus 134 ~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~ 213 (394)
T d2ay1a_ 134 MNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQG 213 (394)
T ss_dssp HHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTT
T ss_pred HHHcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchh
Confidence 999999999999853 3456788888887765577888888888 699986 2269999999999999999998863
Q ss_pred ccccccC--C----CCccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 173 NAQVGLC--R----PGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 173 ~~~~~~~--~----p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
....... . ......+ +++.++.|+++.+ |+|+|++.+.....+.
T Consensus 214 l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~~ 264 (394)
T d2ay1a_ 214 FGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY----RERTGCLLALCADAAT 264 (394)
T ss_dssp SSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG----GGCEEEEEEECSSHHH
T ss_pred hcccccccchhhhhhhhhcccccccccccccccCC----cccccchhhchhHHHH
Confidence 1111000 0 0011223 3444456666654 8999999998766543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=2.4e-13 Score=122.71 Aligned_cols=164 Identities=14% Similarity=0.082 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
+|..+ +++.+++.++ .+..++..++|++. + +.++. ..+|+|++++|.|+.+...++..|+++
T Consensus 56 ~g~~~----Lr~aia~~~~~~~v~~d~I~it~G~~~--~-l~~l~--------~~~d~v~i~~P~y~~~~~~~~~~g~~~ 120 (334)
T d2f8ja1 56 SPDEE----LIEKILSYLDTDFLSKNNVSVGNGADE--I-IYVMM--------LMFDRSVFFPPTYSCYRIFAKAVGAKF 120 (334)
T ss_dssp SSCHH----HHHHHHHHHTCSSCCGGGEEEEEHHHH--H-HHHHH--------HHSSEEEECSSCCHHHHHHHHHHTCCE
T ss_pred CCcHH----HHHHHHHHhcccCCCcceEEecCcchh--H-HHHHh--------hhccccccccccccccccchhccCCcc
Confidence 46544 4445555554 44557777888752 1 22222 236899999999988888888999999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc--cCCCCc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG--LCRPGD 183 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~--~~~p~~ 183 (302)
+.+|+++++..+- ... +++++++++|| |++|.+. +.+++.++ .++++++++|.++...... ...+..
T Consensus 121 v~v~~~~~~~~~~-----~~~---~~~~~l~l~nP~NPtG~~~-s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~ 190 (334)
T d2f8ja1 121 LEVPLTKDLRIPE-----VNV---GEGDVVFIPNPNNPTGHVF-EREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKK 190 (334)
T ss_dssp EECCCCTTSCCCC-----CCC---CTTEEEEEESSCTTTCCCC-CHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGT
T ss_pred ccccccccccccc-----ccc---ccceEEEecccccccceee-cHHHhhcc-ccceeEEeecccchhhccccccccccc
Confidence 9999987765441 122 67899999999 5999987 57788775 4578899999875311110 011111
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..--+++.|.+|+++. .|.|+|++++++++++.+.
T Consensus 191 ~~~~i~~~S~SK~~~~----~G~R~G~~~~~~~~i~~l~ 225 (334)
T d2f8ja1 191 YENLAVIRTFSKAFSL----AAQRVGYVVASEKFIDAYN 225 (334)
T ss_dssp CSSEEEEEESTTTSSC----TTTCEEEEEECHHHHHHHH
T ss_pred CceEEEEecCccccch----hhhhhhhcccchHHHHHHH
Confidence 1222666666777664 4899999999987766553
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.35 E-value=6.9e-12 Score=115.94 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=128.4
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
...-|..++..++++.+++++|.+.+- ...+|-.|+.+++.++... .+++.|+.....|.+....++..+.++
T Consensus 83 r~~~G~~~~h~~LE~~lA~~~g~e~al-l~~sG~~An~~~i~~l~~~------~~~d~i~~D~~~Hasi~~g~~ls~a~~ 155 (396)
T d2bwna1 83 RNISGTTAYHRRLEAEIAGLHQKEAAL-VFSSAYNANDATLSTLRVL------FPGLIIYSDSLNHASMIEGIKRNAGPK 155 (396)
T ss_dssp TTTBCCBHHHHHHHHHHHHHTTCSEEE-EESCHHHHHHHHHHHHHHH------STTCEEEEETTCCHHHHHHHHHSCCCE
T ss_pred ccccCCchHHHHHHHHHHHHhCCCcee-eeecchHHHHHHHHHHhcc------cCCCceeehhhhhhccchhhhccccCc
Confidence 455678889999999999999998764 4567888776666555321 467887777777766666777888888
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC--
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG-- 182 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~-- 182 (302)
+.++. -|++++++.++...+ +...|++..- +..|-+. |+++|.++++++|++++||.||.++..+-.--|
T Consensus 156 ~~f~H-----nd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~a-pl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~ 229 (396)
T d2bwna1 156 RIFRH-----NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFG-PIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA 229 (396)
T ss_dssp EEECT-----TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH
T ss_pred eEeec-----chHHHhhhHHhhhcccCceeEEEEeeccCccccc-ccHhHHHHhhhhcceeeeccceeeeeeccccccch
Confidence 88775 478888888865433 3445555543 4678888 799999999999999999999966554321000
Q ss_pred -----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 -----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 -----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....|++++++.|.|+ -.+|++++++++++.+
T Consensus 230 ~~~~~~~~~di~~gTlsKa~g-------~~Gg~v~~~~~~i~~l 266 (396)
T d2bwna1 230 ERDGLMHRIDIFNGTLAKAYG-------VFGGYIAASARMVDAV 266 (396)
T ss_dssp HHHTCGGGCSEEEEESSSTTC-------SCCEEEEECHHHHHHH
T ss_pred hhcCCceeeeeeeeccccccc-------ccccccchhHHHHHHH
Confidence 1236999998888775 3458999998777665
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.23 E-value=2.8e-12 Score=119.80 Aligned_cols=161 Identities=12% Similarity=0.019 Sum_probs=104.2
Q ss_pred HHHHHHHHHh---C---CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 38 ELETDLCEIT---G---YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 38 e~~~~l~~l~---g---~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|+++.++++. | .+.-.+..++|+ +...+++.|+.........+++++||++.|.|+.|...++..+.+...+.
T Consensus 104 ~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~ 183 (425)
T d2hoxa1 104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA 183 (425)
T ss_dssp HHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE
T ss_pred HHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccC
Confidence 4555555543 4 233357778887 44545555542100000015789999999999888888887776544444
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcc-cccccCCCCccCCcE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVGLCRPGDYGSDV 188 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~p~~~gaDi 188 (302)
+|.+.++++++ +++++++++||| |+|.+.+++. +++.+|+|.++.. ....+ +....-+|
T Consensus 184 ------~D~~~~~~~~~---~~~~ii~l~sPnNPtG~l~~~v~--------~~~~~I~DEaY~~~~f~~~--~~~~~~~I 244 (425)
T d2hoxa1 184 ------GNAANYVNVSN---PEQYIEMVTSPNNPEGLLRHAVI--------KGCKSIYDMVYYWPHYTPI--KYKADEDI 244 (425)
T ss_dssp ------EEGGGGTTCSC---GGGEEEEEESSCTTTCCCCCCSS--------TTCEEEEECTTCSTTTSCC--CSCBCCSE
T ss_pred ------CCHHHHHhhCC---CCceEEEEECCCCCCcchhhhhh--------hCCEEEEeccccCccccch--hhhcCCeE
Confidence 46677777776 789999999995 9998853332 5899999998742 22222 23334478
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCC-CCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSH-LAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~-l~~~l 221 (302)
++.+..|+|+.| |+|+|+++++++ +.+++
T Consensus 245 vl~S~SK~fgla----GlRiGw~i~~~~~i~~~~ 274 (425)
T d2hoxa1 245 LLFTMSKFTGHS----GSRFGWALIKDESVYNNL 274 (425)
T ss_dssp EEEEHHHHTSCG----GGCCEEEEECCHHHHHHH
T ss_pred EEEeCHHhccCc----chheeeEEeCCHHHHHHH
Confidence 888777777655 999999888753 44443
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=9.8e-12 Score=109.72 Aligned_cols=169 Identities=24% Similarity=0.258 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH---HHHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP---ASAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~---~~~~~~g~~v~~i~ 110 (302)
+...++++.+++++|.+.+ +.+.+|+.|+++++.+++ .+++.+++....|.++. ......+..+..++
T Consensus 34 p~~~~le~~lA~~~G~~~~-~~~~sGt~A~~~al~a~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (343)
T d1m6sa_ 34 PTINELERLAAETFGKEAA-LFVPSGTMGNQVSIMAHT--------QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVP 104 (343)
T ss_dssp HHHHHHHHHHHHHTTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeE-EEeCCHHHHHHHHHHHHh--------ccCCceeccccccceeeecccccccccceeeccc
Confidence 5788999999999999875 455689887766666554 57888888887664332 23445566666666
Q ss_pred cCCCCCCCHHHHHHHHhcc---CCCeEEEEEec-CC-Cceecc--ccHHHHHHHHHHhCCEEEEecCCccccccc-CCCC
Q psy7357 111 VRKDGTIDFSDLETKVKKN---KETLSCLMITY-PS-TFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPG 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~-Pn-~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~ 182 (302)
. .++..|++.+++.++.. .+++..+++.. ++ +.|.+. +++++|+++|+++|+++++|+++....... ....
T Consensus 105 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~ 183 (343)
T d1m6sa_ 105 G-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPV 183 (343)
T ss_dssp E-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCH
T ss_pred c-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccch
Confidence 4 35678999999999742 23455555554 44 445442 268889999999999999999874322211 0110
Q ss_pred ---ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 183 ---DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 183 ---~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
....+..+.+.++ +.+|...|++...++..
T Consensus 184 ~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~ 216 (343)
T d1m6sa_ 184 KEYAGYADSVMFCLSK------GLCAPVGSVVVGDRDFI 216 (343)
T ss_dssp HHHHHTCSEEEEESSS------TTCCSSCEEEEECHHHH
T ss_pred hhhccccccccccccc------cccccccccccccHHHH
Confidence 1123444444333 34566777777765543
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.21 E-value=1.6e-12 Score=117.99 Aligned_cols=169 Identities=9% Similarity=-0.042 Sum_probs=110.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCCee--eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccH-HHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKI--SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNP-ASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~-~~~~~~g 103 (302)
++-+.++++++++.|+++++.+.. .+...+|+ .+++++...+. .+++++++....+ +... ..++..|
T Consensus 43 s~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~--------~~~~~~l~~~~g~~~~~~~~~~~~~g 114 (361)
T d2c0ra1 43 GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL--------KEGQTANYVMTGSWASKALKEAKLIG 114 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccc--------cCCCceEEEeechhhhhhhhhhhhcC
Confidence 466889999999999999999642 33333333 33433332222 4567766554322 1112 2566889
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
.+++.++.++...+|++++++.+. .++ .+.+. |++|... ++++|.++||++|+++++|+++.++...+ +..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~v~--~~tg~~~-~~~~i~~~~~~~~al~~vDavss~g~~~i-d~~~ 186 (361)
T d2c0ra1 115 DTHVAASSEASNYMTLPKLQEIQL---QDN-AAYLH--LTSNETI-EGAQFKAFPDTGSVPLIGDMSSDILSRPF-DLNQ 186 (361)
T ss_dssp CEEEEEECGGGTTCSCCCGGGCCC---CTT-EEEEE--EESEETT-TTEECSSCCCCTTSCEEEECTTTTTSSCC-CGGG
T ss_pred ceeeeeccccccccchhhhhhhcc---cCc-ceEEE--Eecccce-ecceEEEeeccCCceEEEEeecccccccc-cccc
Confidence 999999988778889888888776 332 22333 4678888 69999999999999999999875544433 3344
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
.|+.+.++||.++.| |+++++...+.+.+.
T Consensus 187 --~di~~~s~~k~~~~~-----~~~~~~~~~~~~~~~ 216 (361)
T d2c0ra1 187 --FGLVYAGAQKNLGPS-----GVTVVIVREDLVAES 216 (361)
T ss_dssp --CSEEEEETTTTTCCS-----SCEEEEEEGGGSSSC
T ss_pred --ceeEEEecccccccc-----cCcEEEEEhHHhhhC
Confidence 466666668887632 445555555554443
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=1.2e-10 Score=102.37 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH---HHHHhCCCEEEEe
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP---ASAQMAGMSVEPV 109 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~---~~~~~~g~~v~~i 109 (302)
.+.++++++++++++|.+...+++++|+.|+.+++.+++ ..++.+++....|.++. ......+..+..+
T Consensus 37 ~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (345)
T d1v72a1 37 DELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT--------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMT 108 (345)
T ss_dssp SHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC--------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEE
T ss_pred CHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHH--------hcCCccccccccceeeechhhHHHhcCcccccc
Confidence 468899999999999998777777889887755554433 45677777777665432 2345667778888
Q ss_pred ecCCCCCCCHHHHHHHHhccC-----CCeEEEEEecCCCcee---ccccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNK-----ETLSCLMITYPSTFGV---FEENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~-----~~t~~V~i~~Pn~~G~---~~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
+.+.++..|++++++.+.+.. +.+..+.....|..+. +. +++++.++|+++|+++++|+++.
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~D~~~~ 178 (345)
T d1v72a1 109 VDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-EIEAIGDVCKSSSLGLHMDGSRF 178 (345)
T ss_dssp CCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHH-HHHHHHHHHHHTTCEEEEEETTH
T ss_pred cccccccccHHHhhhhhcccccccccccceeeeeeccccccccccch-hhhhHHHHHHhcCceeeeccccc
Confidence 777788999999999997421 1233444444454443 35 68999999999999999999874
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.12 E-value=2.5e-09 Score=99.42 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHH-------hCCC--
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQ-------MAGM-- 104 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~-------~~g~-- 104 (302)
...++.++++++.+-.....+..+|++|+++++..++.+. .+++|+. ....||.+..... ..++
T Consensus 93 ~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t------~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~ 166 (427)
T d2gsaa_ 93 LENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS 166 (427)
T ss_dssp HHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCS
T ss_pred HHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhc------CCCeEEEEecccccCcceeeeecCCcccccCCCC
Confidence 3456677888876544345567899999889988888762 3455554 4567876533211 1111
Q ss_pred ----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecC
Q psy7357 105 ----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 105 ----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a 170 (302)
+...+| .-|++++++.++++++++++|+++.- ...|.+.++ +++|+++|+++|+++|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~-----~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv 241 (427)
T d2gsaa_ 167 SPGVPKKTTANTLTTP-----YNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241 (427)
T ss_dssp CSSSCHHHHTTEEEEC-----TTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCcccCccceeccC-----cchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccc
Confidence 122222 35899999999987788888888642 345776522 99999999999999999998
Q ss_pred Ccccc--cccCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 171 NMNAQ--VGLCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 171 ~~~~~--~~~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+. +. +...... ...+|+++. .|+++ ||-.+|.+++++++++.+.
T Consensus 242 ~t-G~r~g~~~~~~~~gi~PDi~~~--gK~lg-----gG~p~~a~~~~~~i~~~~~ 289 (427)
T d2gsaa_ 242 MT-GFRIAYGGVQEKFGVTPDLTTL--GKIIG-----GGLPVGAYGGKREIMQLVA 289 (427)
T ss_dssp TT-BTTTBTTCHHHHTTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHTTBT
T ss_pred cc-cceecccchHHhcCCCHHHHhh--hhccC-----CCcceeeeeehHHHHHHhc
Confidence 74 21 1110000 123799999 48886 2334466777877766553
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.05 E-value=1.1e-11 Score=111.76 Aligned_cols=167 Identities=11% Similarity=-0.012 Sum_probs=102.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccH-HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNP-ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~-~~~~~~g~ 104 (302)
++-+.+++++.++.++++++++.. .+.+.+|+ +++..+..... ..+++++++.... |+... ..+...+.
T Consensus 43 s~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~-------~~~~~~v~~~~~g~~~~~~~~~~~~~~~ 115 (360)
T d1w23a_ 43 SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL-------LTKGTIGNYVLTGSWSEKALKEAKLLGE 115 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-------CCTTCEEEEEECSHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh-------cccCcccceeeccchhhhhHHHHHHhhh
Confidence 456788999999999999999653 44444454 32211111111 1456666665432 22222 24456666
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
.++.....+....+++++++... ..+ .+.+. |.+|.+. |+++|+++||++|+++++|+++.++...+ +..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~tg~~~-~~~~i~~~~~~~g~l~ivDavqs~g~~~i-d~~~~ 187 (360)
T d1w23a_ 116 THIAASTKANSYQSIPDFSEFQL---NEN-DAYLH--ITSNNTI-YGTQYQNFPEINHAPLIADMSSDILSRPL-KVNQF 187 (360)
T ss_dssp EEEEEECGGGTSCSCCCGGGCCC---CTT-EEEEE--EESEETT-TTEECSSCCCCCSSCEEEECTTTTTSSCC-CGGGC
T ss_pred cceeeccccccccchhhhhhccc---ccc-cceeE--ecCCccc-cceeeeeccccceeeEEeecccccccccc-ccccc
Confidence 66666654333444455544443 222 22232 4679999 79999999999999999999986555443 56778
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
++|+++++.||++ +|+.|++..++..
T Consensus 188 ~vd~~~~~~~k~~-------~~~~~~~~~~~~~ 213 (360)
T d1w23a_ 188 GMIYAGAQKNLGP-------SGVTVVIVKKDLL 213 (360)
T ss_dssp SEEEEETTTTTSC-------TTCEEEEEEHHHH
T ss_pred cceEEeecccccc-------CCcceeeEechhh
Confidence 8888887666532 3566666666433
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.05 E-value=8.1e-09 Score=94.69 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g-------- 103 (302)
+...++.+.+.+....... .....||++|+++++..+|.+ ..+++|+... ..||.........|
T Consensus 79 ~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~------t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~ 152 (387)
T d1vefa1 79 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPF 152 (387)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGG
T ss_pred chHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhh------cccceecccccCCCCCccceEeccCCccccCCC
Confidence 4455666667666555433 456889999988998888876 2345555544 57787655433222
Q ss_pred ----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 104 ----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 104 ----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
-.+..+|. -|++.|++.++ +++++|++.-- ...|...++ ++++.++|+++|+++|+|+++. ++
T Consensus 153 ~p~~~~~~~~p~-----~d~~~l~~~~~---~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-Gf 223 (387)
T d1vefa1 153 LPLVEPVEFIPY-----NDVEALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-GM 223 (387)
T ss_dssp CSCSSCEEEECT-----TCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCCceEeCC-----CCHHHHHHhcC---CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc-cc
Confidence 23555664 37999999997 78999887531 344665422 8999999999999999999863 22
Q ss_pred cccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 176 VGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 176 ~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+-..... ...+|+++. .|+++. |-.++.+..+++.++.+
T Consensus 224 gR~G~~~~~~~~~v~PDi~~~--gK~l~g-----G~~~~~~~~~~~~~~~~ 267 (387)
T d1vefa1 224 GRTGKRFAFEHFGIVPDILTL--AKALGG-----GVPLGVAVMREEVARSM 267 (387)
T ss_dssp TTTSSSSTHHHHTCCCSEEEE--CGGGGT-----TSSCEEEEEEHHHHHTS
T ss_pred CccCCCcccccCCcCCceeee--cccCCC-----Cccccccccceeeeecc
Confidence 1111111 123699999 498873 33345555665554443
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.9e-08 Score=92.68 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhc--CCCCCEEE-EcCCCCcccHHHHH-------hCC--
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQD--AHHRNVCL-IPVSAHGTNPASAQ-------MAG-- 103 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g--~~~~d~Vl-v~~~~hg~~~~~~~-------~~g-- 103 (302)
..++.+.++++.+.+.+ +..++|++|+++++...|.+....+ ...+.+|+ .....||....... ..+
T Consensus 85 ~~~~~~~~~~~~~~~~v-~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~ 163 (404)
T d2byla1 85 LGEYEEYITKLFNYHKV-LPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG 163 (404)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSC
T ss_pred HHHHHHhhhhccccccc-ccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCC
Confidence 45667788889998875 5678999998888888877643221 11233444 45556776554322 111
Q ss_pred ---CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 104 ---MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 104 ---~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
-.+..+|. .|++++++.+.+ +++++|+++-- ...|.+.+ -+++|+++|+++|+++|+|+++. +++
T Consensus 164 p~~~~~~~~p~-----~d~~~l~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-Gfg 235 (404)
T d2byla1 164 PFMPGFDIIPY-----NDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLA 235 (404)
T ss_dssp SCCTTEEEECT-----TCHHHHHHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTT
T ss_pred CCCCCeeEecc-----cCHHHHHHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccc-ccc
Confidence 13444554 489999999973 67888887531 34565531 28999999999999999999873 222
Q ss_pred ccCCC---Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 177 GLCRP---GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 177 ~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
..... ..+ .+|+++. .|.++ .|+..+|.+++++++++.+....
T Consensus 236 R~G~~~a~~~~gv~PDi~~~--gK~l~----gG~~p~~av~~~~~i~~~~~~~~ 283 (404)
T d2byla1 236 RTGRWLAVDYENVRPDIVLL--GKALS----GGLYPVSAVLCDDDIMLTIKPGE 283 (404)
T ss_dssp TTSSSSGGGGGTCCCSEEEE--CGGGG----TTSSCCEEEEECHHHHTTSCTTS
T ss_pred cccccchhhhcCCCCCEEEE--Cchhh----CCCccceeeeechhhhhccCCCC
Confidence 11111 112 2699988 48886 23467899999988877665433
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2.7e-08 Score=92.39 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC---------
Q psy7357 35 LIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG--------- 103 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g--------- 103 (302)
...++.+++.+.+..+.. .....+|++|+++++...|.+...+|. .+.+|+. ....||.+.......+
T Consensus 87 ~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~-~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~ 165 (429)
T d1s0aa_ 87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLW 165 (429)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC-CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGG
T ss_pred HHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccc-cccEEEEecCCccccchhhhhhcCCcccccccc
Confidence 455666777777754432 345789999988898888887655553 3445444 4557887765433221
Q ss_pred ----CEEEEeecCC---CC---CCCHHHHHHHHhccCCCeEEEEEecC--CCceeccc---cHHHHHHHHHHhCCEEEEe
Q psy7357 104 ----MSVEPVSVRK---DG---TIDFSDLETKVKKNKETLSCLMITYP--STFGVFEE---NITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 104 ----~~v~~i~~~~---~g---~iD~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~~g~llivD 168 (302)
......|... .. .-+++++++.+.++.+++++|+++-. +.-|+..+ -+++|+++|+++|+++|+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~D 245 (429)
T d1s0aa_ 166 KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD 245 (429)
T ss_dssp TTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE
T ss_pred CccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehh
Confidence 1223333221 11 23566777777766688999988742 33344322 3899999999999999999
Q ss_pred cCCcccccccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 169 GANMNAQVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 169 ~a~~~~~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++. +++-.... -...+|+++. .|.++ .|+..+|.+++++++.+.+
T Consensus 246 EV~t-GfGRtG~~~~~~~~~v~PDi~~~--gK~l~----gG~~p~~av~~~~~i~~~~ 296 (429)
T d1s0aa_ 246 EIAT-GFGRTGKLFACEHAEIAPDILCL--GKALT----GGTMTLSATLTTREVAETI 296 (429)
T ss_dssp CTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGG----TSSSCCEEEEECHHHHHHH
T ss_pred hccc-cccccccccccccceeccccccc--ccccc----cccccccchhhHHHHHhcc
Confidence 9874 22111111 1124799998 48876 3557888899998776554
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=5.5e-11 Score=106.53 Aligned_cols=174 Identities=10% Similarity=-0.114 Sum_probs=109.5
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCe-eeEe-eCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhC
Q psy7357 28 QARGYEQLIGELETDLCEITGYDK-ISFQ-PNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMA 102 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~-~~~~-~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~ 102 (302)
+++-+.++++++++.++++++++. ..+. ..+++ .+++++...+ ..+++.+++....+.... ..++..
T Consensus 40 Rs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~ 111 (360)
T d1bjna_ 40 RGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI--------LGDKTTADYVDAGYWAASAIKEAKKY 111 (360)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH--------CTTCCEEEEEESSHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc--------cccccccceecccchhhhhHHHHhhc
Confidence 356688999999999999999964 2333 33333 3332322221 156777777654332221 245567
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|..++.+..+.++..|.+++++.+. ++++++++++ .|.+|+.. +++++. ++.+++++++|+++ +.+.. +.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~~~~t~~~~-~~~~i~--~~~~~~~v~vDa~~--~~~~~-~v 182 (360)
T d1bjna_ 112 CTPNVFDAKVTVDGLRAVKPMREWQ---LSDNAAYMHYCPNETIDGI-AIDETP--DFGADVVVAADFSS--TILSR-PI 182 (360)
T ss_dssp SEEEEEECEEEETTEEEECCGGGCC---CCSSCSCEEECSEETTTTE-ECCCCC--CCCTTCCEEEECTT--TTTSS-CC
T ss_pred CccceeeccccCCCcchhhhhhhhc---cCCceeEEEecccccccCc-ccccee--cccccceeeeeeec--cccce-ee
Confidence 7777777765566666666666665 4444444433 26778777 566664 47788999999865 33332 34
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
..+++|+.++++||+++.| |++|+++.++...+..+.
T Consensus 183 d~~~~dv~~~ss~k~~~~~-----~~~~~~~~~~~~~~~~~~ 219 (360)
T d1bjna_ 183 DVSRYGVIYAGAQKNIGPA-----GLTIVIVREDLLGKANIA 219 (360)
T ss_dssp CGGGCSEEEEETTTTTSST-----TCEEEEEEGGGCSCCCTT
T ss_pred eeccceeEEEEcccccccC-----CCceeEeeehhhhhcccc
Confidence 5577899999999999743 677778877766655543
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.5e-07 Score=87.07 Aligned_cols=176 Identities=13% Similarity=0.128 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~------ 104 (302)
+...++.+++++++.-+ ...+..++||+|+++++...+.+. .+++|+. ....||.+.......|.
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t------~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~ 156 (425)
T d1sffa_ 83 EPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSA 156 (425)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTT
T ss_pred cHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhh------cccceEeecCCCcCccccchhhcCCCCcccC
Confidence 45677888899988643 235567899999889988888773 3445444 45678877655443221
Q ss_pred -------EEEEeecC--CCCCCC---HHHHHHHH--hccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEE
Q psy7357 105 -------SVEPVSVR--KDGTID---FSDLETKV--KKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVY 166 (302)
Q Consensus 105 -------~v~~i~~~--~~g~iD---~~~l~~~i--~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~lli 166 (302)
.....+.+ ...... .+..++.+ ....+++++|+++.- ...|++.+ -+++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI 236 (425)
T d1sffa_ 157 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI 236 (425)
T ss_dssp TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred CcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEE
Confidence 12222221 111111 11111211 122356888887642 24465532 48999999999999999
Q ss_pred EecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 167 LDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 167 vD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+|+++. +.+..... . ...+|+++. .|+++. |-.+|.+++++++++.+..
T Consensus 237 ~DEV~t-G~gR~g~~~a~~~~gv~PDi~~~--gK~l~g-----G~P~~av~~~~~i~~~~~~ 290 (425)
T d1sffa_ 237 ADEVQS-GAGRTGTLFAMEQMGVAPDLTTF--AKSIAG-----GFPLAGVTGRAEVMDAVAP 290 (425)
T ss_dssp EECTTT-TTTTTSSSSGGGGTTSCCSEEEE--CGGGGT-----SSCCEEEEEEHHHHTTSCT
T ss_pred eccccc-cCCCcchhhHHHhcCCCccceec--ccccCC-----CcceEEEEEcHHHHHhhCC
Confidence 999874 22111111 1 124799998 498862 3348888899887776543
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.83 E-value=1.2e-07 Score=87.12 Aligned_cols=174 Identities=15% Similarity=0.178 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhh--cCCCCCEEEEcC-CCCcccHHHHHhCC---C----
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQ--DAHHRNVCLIPV-SAHGTNPASAQMAG---M---- 104 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~--g~~~~d~Vlv~~-~~hg~~~~~~~~~g---~---- 104 (302)
...++++.++++.+.+.+. ...+|+.++++++...+.+.... +...+.+++... ..||.........+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~v~-~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~ 160 (404)
T d1z7da1 82 PLGICERYLTNLLGYDKVL-MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 160 (404)
T ss_dssp HHHHHHHHHHHHHTCSEEE-EESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHhhhhccccceee-eeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCC
Confidence 4567788899999988754 56889988878877777654322 112233445443 34554433222111 1
Q ss_pred -----EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 105 -----SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 105 -----~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
.+..+|. -+.+.++..+. .+++++|+++-- ...|.+.++ +++|+++|+++|+++|+|+++. ++
T Consensus 161 ~~~~~~~~~~~~-----~~~~~l~~~~~--~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t-Gf 232 (404)
T d1z7da1 161 GPFAPQFSKVPY-----DDLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GL 232 (404)
T ss_dssp -----CEEEECT-----TCHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TT
T ss_pred CCCCcccccccc-----chHHHHHHHhc--CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CC
Confidence 1222222 36778888776 257888887542 355776523 8999999999999999999973 33
Q ss_pred cccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 176 VGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 176 ~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+..... . ...+|+++. .|+++ .|++.+|.+++++++.+.+..
T Consensus 233 gRtG~~~~~e~~gv~PDivt~--gK~l~----gG~~p~~~v~~~~~i~~~~~~ 279 (404)
T d1z7da1 233 GRTGKLLCVHHYNVKPDVILL--GKALS----GGHYPISAVLANDDIMLVIKP 279 (404)
T ss_dssp TTTSSSSGGGGGTCCCSEEEE--CGGGG----TTSSCCEEEEECHHHHTTCCT
T ss_pred CcccccccccccCCCCCEEEE--ccccc----CCCCCcccccchHHHHccCCC
Confidence 211111 1 123799998 48886 344778999999888776643
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.75 E-value=2.2e-07 Score=86.00 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHh--CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~--g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++ +.+.+ ++.+|||+|+++++..+|.+. .+++|+ .....||.+.......+
T Consensus 83 ~~~~~la~~L~~~~~~~~~~v-~f~~sGseA~e~Alk~Ar~~t------~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~ 155 (431)
T d1zoda1 83 RPVVDLATRLANITPPGLDRA-LLLSTGAESNEAAIRMAKLVT------GKYEIVGFAQSWHGMTGAAASATYSAGRKGV 155 (431)
T ss_dssp HHHHHHHHHHHHHSCTTCCEE-EEESCHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHTCCSSCCSSS
T ss_pred HHHHHHHHHHHHhCCccccee-eecccccchHHHHHHHHHHhc------CCcceeecccccccccchhhccccccccccc
Confidence 34557888899887 45554 567899999889988888762 344544 44567887765443211
Q ss_pred ----CEEEEeecCCCC---------CCC---HHHHHHHHh-ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhC
Q psy7357 104 ----MSVEPVSVRKDG---------TID---FSDLETKVK-KNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 104 ----~~v~~i~~~~~g---------~iD---~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
.....++..... ..+ ++.+...+. ...+++++|+++.- ..-|.+.+ -+++|+++|+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~g 235 (431)
T d1zoda1 156 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARG 235 (431)
T ss_dssp CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcC
Confidence 123333322110 112 333433333 23357788877642 23455532 2899999999999
Q ss_pred CEEEEecCCcccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 163 GQVYLDGANMNAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+++|+|+++. +++-..... ...+|+++. .|.+++ |-|- +.++++++.
T Consensus 236 illI~DEV~t-G~gRtG~~~~~~~~gv~PDi~~~--gK~l~g----G~p~-~av~~~~~~ 287 (431)
T d1zoda1 236 MLLILDEAQT-GVGRTGTMFACQRDGVTPDILTL--SKTLGA----GLPL-AAIVTSAAI 287 (431)
T ss_dssp CEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEE--CHHHHT----TSSC-EEEEECHHH
T ss_pred ceEEeccccc-cccccccccccccCCCCcchhcc--cccccc----cccc-ceeeeeecc
Confidence 9999999874 222111111 123699999 498873 3344 445555443
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.68 E-value=6.3e-08 Score=83.27 Aligned_cols=131 Identities=15% Similarity=0.236 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHHhCCCEEEEe
Q psy7357 33 EQLIGELETDLCEITGYDKISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQMAGMSVEPV 109 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~~~g~~v~~i 109 (302)
.+..+++++++++++|.+...+.+ .+|++|+..++.++. .+++++++....|.++.. .....+......
T Consensus 34 ~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (340)
T d1svva_ 34 DSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--------RPWEAVIATQLGHISTHETGAIEATGHKVVTA 105 (340)
T ss_dssp SHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC--------CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh--------hhccccccccccceeeeecccccccceeeeec
Confidence 356789999999999998765554 556666544444332 577787877776543321 223344444444
Q ss_pred ecCCCCCCCHHHHHHHHhc----cCCCeEEEEEecCCCceecc--ccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKK----NKETLSCLMITYPSTFGVFE--ENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~----~~~~t~~V~i~~Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~ 172 (302)
... ....+.+...++... +.+.+..+++.++|..|.+. +++..+.++|+++|+++++|.++.
T Consensus 106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~ 173 (340)
T d1svva_ 106 PCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARL 173 (340)
T ss_dssp CCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTH
T ss_pred ccc-cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccce
Confidence 432 233444444444432 11234455566666545442 258888999999999999999874
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.63 E-value=1.3e-06 Score=81.45 Aligned_cols=180 Identities=13% Similarity=0.167 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcC--------------------CCCCEEEE-cCCCCc
Q psy7357 36 IGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDA--------------------HHRNVCLI-PVSAHG 93 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~--------------------~~~d~Vlv-~~~~hg 93 (302)
.+++.+++.++.+-+. ..++.+||++|+++++..++.|...++. .++.+||. ....||
T Consensus 102 a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG 181 (461)
T d1ohwa_ 102 VEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 181 (461)
T ss_dssp HHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCC
T ss_pred HHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCC
Confidence 4556666666554332 2456789999988998888876543211 22335554 456888
Q ss_pred ccHHHHHhCCC-----------EEEEeecCC-CC-------------CCCHHHHHHHHh---ccCCCeEEEEEecC-CCc
Q psy7357 94 TNPASAQMAGM-----------SVEPVSVRK-DG-------------TIDFSDLETKVK---KNKETLSCLMITYP-STF 144 (302)
Q Consensus 94 ~~~~~~~~~g~-----------~v~~i~~~~-~g-------------~iD~~~l~~~i~---~~~~~t~~V~i~~P-n~~ 144 (302)
.+.......|- .....|... .. ..+.+++++.+. ++.+++++|+++.- ...
T Consensus 182 ~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~ 261 (461)
T d1ohwa_ 182 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEG 261 (461)
T ss_dssp SSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTT
T ss_pred CCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccc
Confidence 77665443321 111112111 00 123455555553 34577888888752 344
Q ss_pred eecccc---HHHHHHHHHHhCCEEEEecCCc-ccccc-cCCCCcc----CCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 145 GVFEEN---ITDVCELIHEHGGQVYLDGANM-NAQVG-LCRPGDY----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 145 G~~~~d---i~~I~~ia~~~g~llivD~a~~-~~~~~-~~~p~~~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
|.+.++ +++|.++|+++|+++|+|+++. .+..+ +..-..+ -+|+++.+ |.++ .|.+....
T Consensus 262 G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~---------~g~~~~~~ 330 (461)
T d1ohwa_ 262 GDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMM---------TGGFFHKE 330 (461)
T ss_dssp TCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGS---------SEEEEECG
T ss_pred cccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhh--hccc---------cccccccc
Confidence 665323 8999999999999999999873 21111 1111111 26999984 8664 24444455
Q ss_pred CCCCCCCCCcc
Q psy7357 216 HLAPFLPVHPL 226 (302)
Q Consensus 216 ~l~~~lpg~~~ 226 (302)
.+...-+....
T Consensus 331 ~~~~~~~~~~~ 341 (461)
T d1ohwa_ 331 EFRPNAPYRIF 341 (461)
T ss_dssp GGSCSSTTSSC
T ss_pred ccccccccccc
Confidence 55554454444
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=80.56 E-value=7.1 Score=29.60 Aligned_cols=63 Identities=6% Similarity=0.019 Sum_probs=42.4
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhC---CEEEEe
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHG---GQVYLD 168 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g---~llivD 168 (302)
..+..|++|+..+.+ ..++++.+++.+++. .+|.+++-+ .+..+ .++++.+.+++.| +++++=
T Consensus 60 ~l~~~G~eVi~lg~~----~~~e~iv~aa~~~~a--dvI~iSs~~-~~~~~-~~~~l~~~L~~~g~~~v~VivG 125 (168)
T d7reqa2 60 AYADLGFDVDVGPLF----QTPEETARQAVEADV--HVVGVSSLA-GGHLT-LVPALRKELDKLGRPDILITVG 125 (168)
T ss_dssp HHHHTTCEEEECCTT----BCHHHHHHHHHHHTC--SEEEEEECS-SCHHH-HHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHhCCcceecCCCc----CcHHHHHHHHHccCC--CEEEEecCc-ccchH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 456889999887753 568888888776444 446665522 23445 6899999999976 555543
|