Psyllid ID: psy7373

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
STVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESIFTAVTAYQNQLIFA
Secondary Structure (PSIPRED)
ccEEcccccccHHHHHccccEEEEEEEccccccccccEEEcccccccEEEEEEEEccccccccccccccccEEEEEccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccEEHHHHccccEEcccccEEcccccccccEEccccEEEEEEEEEEccccccccccccccccccEEEEEcHHHcEEEEcccccHHHHH
Coil and Loop (DISEMBL)
stvlypdspftgdqLRKQVVSFEKVKltnnemdkhgHLVLNSMhkyqprihlvkrhestinhpitdleaeeyktfiypesIFTAVTAYQNQLIFA
Flexible Loop (DISEMBL)
stvlypdspftgdqlrkQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESIFTAVTAYQNQLIFA
Low Complexity Region (SEG)
STVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESIFTAVTAYQNQLIFA
Disordered region (IsUnstruct)
******************VVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESIFTAVTAYQNQLIF*
Disordered Region (DISOPRED)
STVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRH**********LEAEEYKTFIYPESIFTAVTAYQNQLIF*
Disordered Region (DISEMBL)
STVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESIFTAVTAYQNQLIFA
Disordered Region (DISPRO)
STVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESIFTAVTAYQNQLIFA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
STVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESIFTAVTAYQNQLIFA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q8UW76	440	T-box transcription facto	yes	N/A	0.926	0.2	0.666	6e-33
Q9ES03	445	T-box transcription facto	no	N/A	0.926	0.197	0.666	8e-33
Q9UMR3	447	T-box transcription facto	no	N/A	0.926	0.196	0.666	9e-33
Q8AXW8	441	T-box transcription facto	N/A	N/A	0.926	0.199	0.655	1e-31
Q3SA46	440	T-box transcription facto	yes	N/A	0.926	0.2	0.655	1e-31
Q9I9K7	446	T-box transcription facto	yes	N/A	0.926	0.197	0.644	2e-31
Q94890	660	T-box protein H15 OS=Dros	yes	N/A	0.936	0.134	0.644	2e-28
P90971	346	T-box protein 12 OS=Caeno	yes	N/A	0.947	0.260	0.648	2e-27
Q9EPZ6	613	T-box transcription facto	no	N/A	0.947	0.146	0.505	1e-22
O95935	607	T-box transcription facto	no	N/A	0.947	0.148	0.505	1e-22

>sp|Q8UW76|TBX20_CHICK T-box transcription factor TBX20 OS=Gallus gallus GN=TBX20 PE=2 SV=1

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 83/90 (92%), Gaps = 2/90 (2%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct: 179 VHPDSPFTGEQLMKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 236

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct: 237 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 266

Probable transcriptional regulator involved in developmental processes.
Gallus gallus (taxid: 9031)

>sp|Q9ES03|TBX20_MOUSE T-box transcription factor TBX20 OS=Mus musculus GN=Tbx20 PE=2 SV=3

 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 83/90 (92%), Gaps = 2/90 (2%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct: 184 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 241

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct: 242 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 271

Probable transcriptional regulator involved in developmental processes.

Mus musculus (taxid: 10090)

>sp|Q9UMR3|TBX20_HUMAN T-box transcription factor TBX20 OS=Homo sapiens GN=TBX20 PE=1 SV=4

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 83/90 (92%), Gaps = 2/90 (2%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct: 185 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 242

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct: 243 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 272

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

>sp|Q8AXW8|TBX20_XENLA T-box transcription factor TBX20 OS=Xenopus laevis GN=tbx20 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 82/90 (91%), Gaps = 2/90 (2%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct: 179 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 236

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           + +L++EE++TFI+ E++FTAVTAYQNQLI
Sbjct: 237 LLNLKSEEFRTFIFQETVFTAVTAYQNQLI 266

Probable transcriptional regulator involved in developmental processes.

Xenopus laevis (taxid: 8355)

>sp|Q3SA46|TBX20_XENTR T-box transcription factor TBX20 OS=Xenopus tropicalis GN=tbx20 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 82/90 (91%), Gaps = 2/90 (2%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct: 179 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 236

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           + +L++EE++TFI+ E++FTAVTAYQNQLI
Sbjct: 237 LLNLKSEEFRTFIFQETVFTAVTAYQNQLI 266

Probable transcriptional regulator involved in developmental processes.

Xenopus tropicalis (taxid: 8364)

>sp|Q9I9K7|TBX20_DANRE T-box transcription factor TBX20 OS=Danio rerio GN=tbx20 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 82/90 (91%), Gaps = 2/90 (2%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct: 184 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 241

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           + +L++EE++TF++ E++FTAVTAYQNQLI
Sbjct: 242 LLNLKSEEFRTFVFTETVFTAVTAYQNQLI 271

May play a very early role in the differentiation of the cardiac precursors.

Danio rerio (taxid: 7955)

>sp|Q94890|H15_DROME T-box protein H15 OS=Drosophila melanogaster GN=H15 PE=2 SV=2

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 1/90 (1%)

Query: 5   YPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVK-RHESTINHP 63
           +PD P + + LRKQVVSFEKVKLTNNEMDK G +VLNSMH+YQPRIHLV+  H  +I   
Sbjct: 367 HPDCPLSPEALRKQVVSFEKVKLTNNEMDKSGQVVLNSMHRYQPRIHLVRLSHGQSIPGS 426

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             +L+  ++KTF++PE++FTAVTAYQNQLI
Sbjct: 427 PKELQDMDHKTFVFPETVFTAVTAYQNQLI 456

Drosophila melanogaster (taxid: 7227)

>sp|P90971|TBX12_CAEEL T-box protein 12 OS=Caenorhabditis elegans GN=mab-9 PE=2 SV=2

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/91 (64%), Positives = 73/91 (80%), Gaps = 1/91 (1%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           L+PDSPFTGDQL K V+SFEK KLTNNE+DK GHL+LNSMHKYQPRIH+V+R ++    P
Sbjct: 162 LHPDSPFTGDQLLKHVISFEKTKLTNNEVDKTGHLILNSMHKYQPRIHIVQRQKANPLDP 221

Query: 64  ITDLEAEE-YKTFIYPESIFTAVTAYQNQLI 93
              + +EE + T+ +PE+ F AVTAYQNQLI
Sbjct: 222 NKVVMSEEKHCTYTFPETQFMAVTAYQNQLI 252

Involved in cell fate determination; required to pattern the posterior hindgut.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9EPZ6|TBX18_MOUSE T-box transcription factor TBX18 OS=Mus musculus GN=Tbx18 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSP +G+   +QV+SF+K+KLTNNE+D  GH++L+SMHKYQPR+H++++       P
Sbjct: 230 IHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGDDLSP 289

Query: 64  ITDL-EAEEYKTFIYPESIFTAVTAYQNQLI 93
           I  +   E  K F +PE++FT VTAYQNQ I
Sbjct: 290 IKPVPSGEGVKAFSFPETVFTTVTAYQNQQI 320

Probable transcriptional regulator involved in developmental processes.

Mus musculus (taxid: 10090)

>sp|O95935|TBX18_HUMAN T-box transcription factor TBX18 OS=Homo sapiens GN=TBX18 PE=2 SV=3

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSP +G+   +QV+SF+K+KLTNNE+D  GH++L+SMHKYQPR+H++++       P
Sbjct: 224 IHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGDDLSP 283

Query: 64  ITDL-EAEEYKTFIYPESIFTAVTAYQNQLI 93
           I  +   E  K F +PE++FT VTAYQNQ I
Sbjct: 284 IKPVPSGEGVKAFSFPETVFTTVTAYQNQQI 314

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
242007800	354	T-box protein H15, putative [Pediculus h	0.947	0.254	0.9	7e-42
383863845	506	PREDICTED: uncharacterized protein LOC10	0.947	0.177	0.811	9e-38
340714247	612	PREDICTED: hypothetical protein LOC10065	0.947	0.147	0.833	2e-37
57753447	153	H15-1 protein [Glomeris marginata]	0.947	0.588	0.777	2e-37
57753449	153	H15-2 protein [Glomeris marginata]	0.947	0.588	0.777	3e-37
380025176	463	PREDICTED: uncharacterized protein LOC10	0.947	0.194	0.811	4e-37
328791144	621	PREDICTED: hypothetical protein LOC72665	0.947	0.144	0.822	4e-37
350417451	502	PREDICTED: T-box transcription factor TB	0.947	0.179	0.833	5e-37
357611649	337	putative T-box protein H15 [Danaus plexi	0.936	0.264	0.842	1e-36
332026779	214	T-box transcription factor TBX20 [Acromy	0.936	0.415	0.808	1e-36

>gi|242007800|ref|XP_002424710.1| T-box protein H15, putative [Pediculus humanus corporis] gi|212508203|gb|EEB11972.1| T-box protein H15, putative [Pediculus humanus corporis]

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 87/90 (96%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKR+EST N P
Sbjct: 57  MHPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRYESTGNLP 116

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           +TDLE EE+KTFIYPES+FTAVTAYQNQLI
Sbjct: 117 VTDLEQEEFKTFIYPESVFTAVTAYQNQLI 146

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863845|ref|XP_003707390.1| PREDICTED: uncharacterized protein LOC100883566 [Megachile rotundata]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 83/90 (92%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QLRKQVVSFEKVKLTNN+MD+HGHLVLNSMHKYQPRIHLVKR +S    P
Sbjct: 184 VHPDSPFTGEQLRKQVVSFEKVKLTNNDMDRHGHLVLNSMHKYQPRIHLVKRPDSGTAKP 243

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           ITDLE E +KTF++PE+IFTAVTAYQNQLI
Sbjct: 244 ITDLEKEPHKTFVFPEAIFTAVTAYQNQLI 273

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714247|ref|XP_003395642.1| PREDICTED: hypothetical protein LOC100650682 [Bombus terrestris]

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/90 (83%), Positives = 83/90 (92%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QLRKQVVSFEKVKLTNN+MD+HGHLVLNSMHKYQPRIHLVKR ES    P
Sbjct: 291 VHPDSPFTGEQLRKQVVSFEKVKLTNNDMDRHGHLVLNSMHKYQPRIHLVKRPESGTAKP 350

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           ITDLE E +KTFI+PE+IFTAVTAYQNQLI
Sbjct: 351 ITDLEKEPHKTFIFPEAIFTAVTAYQNQLI 380

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|57753447|emb|CAH04897.1| H15-1 protein [Glomeris marginata]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 85/90 (94%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           L+PDSPF+G+QLRKQVVSFEKVKLTNNEMDKHGH++LNSMH+YQPR+HLVKR E + N P
Sbjct: 61  LHPDSPFSGEQLRKQVVSFEKVKLTNNEMDKHGHIILNSMHRYQPRVHLVKRREISANAP 120

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           I+DLE+EE++TF++ E+IFTAVTAYQNQLI
Sbjct: 121 ISDLESEEFRTFVFTETIFTAVTAYQNQLI 150

Source: Glomeris marginata

Species: Glomeris marginata

Genus: Glomeris

Family: Glomeridae

Order: Glomerida

Class: Diplopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|57753449|emb|CAH04898.1| H15-2 protein [Glomeris marginata]

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 85/90 (94%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           L+PDSPF+G+QLRKQVVSFEKVKLTNNEMDKHGH++LNSMH+YQPR+HLVKR E + N P
Sbjct: 61  LHPDSPFSGEQLRKQVVSFEKVKLTNNEMDKHGHIILNSMHRYQPRVHLVKRREISANAP 120

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           I+DLE+EE++TF++ E+IFTAVTAYQNQLI
Sbjct: 121 ISDLESEEFRTFVFTETIFTAVTAYQNQLI 150

Source: Glomeris marginata

Species: Glomeris marginata

Genus: Glomeris

Family: Glomeridae

Order: Glomerida

Class: Diplopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025176|ref|XP_003696354.1| PREDICTED: uncharacterized protein LOC100872856 [Apis florea]

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/90 (81%), Positives = 83/90 (92%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QLRKQVVSFEKVKLTNN+MD+HGHLVLNSMHKYQPRIHLVKR +S    P
Sbjct: 342 VHPDSPFTGEQLRKQVVSFEKVKLTNNDMDRHGHLVLNSMHKYQPRIHLVKRPDSGTAKP 401

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           ITDLE E +KTFI+PE+IFTAVTAYQNQL+
Sbjct: 402 ITDLEKEPHKTFIFPEAIFTAVTAYQNQLV 431

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791144|ref|XP_003251524.1| PREDICTED: hypothetical protein LOC726654 [Apis mellifera]

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/90 (82%), Positives = 83/90 (92%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QLRKQVVSFEKVKLTNN+MD+HGHLVLNSMHKYQPRIHLVKR +S    P
Sbjct: 294 VHPDSPFTGEQLRKQVVSFEKVKLTNNDMDRHGHLVLNSMHKYQPRIHLVKRPDSGTAKP 353

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           ITDLE E +KTFI+PE+IFTAVTAYQNQLI
Sbjct: 354 ITDLEKEPHKTFIFPEAIFTAVTAYQNQLI 383

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417451|ref|XP_003491428.1| PREDICTED: T-box transcription factor TBX20-like, partial [Bombus impatiens]

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/90 (83%), Positives = 84/90 (93%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QLRKQVVSFEKVKLTNN+MD+HGHLVLNSMHKYQPRIHLVKR ES  + P
Sbjct: 205 VHPDSPFTGEQLRKQVVSFEKVKLTNNDMDRHGHLVLNSMHKYQPRIHLVKRPESGTSKP 264

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           ITDLE E +KTFI+PE+IFTAVTAYQNQLI
Sbjct: 265 ITDLEKEPHKTFIFPEAIFTAVTAYQNQLI 294

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611649|gb|EHJ67586.1| putative T-box protein H15 [Danaus plexippus]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/89 (84%), Positives = 81/89 (91%)

Query: 5   YPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPI 64
           +PDSPF+GDQLRKQVVSFEKVKLTNNEMDK+G LVLNSMHKYQPRIHLV R E  IN PI
Sbjct: 58  HPDSPFSGDQLRKQVVSFEKVKLTNNEMDKNGQLVLNSMHKYQPRIHLVLRREGAINAPI 117

Query: 65  TDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           TDLE EE+KTFI+PE +FTAVTAYQNQLI
Sbjct: 118 TDLEQEEFKTFIFPECVFTAVTAYQNQLI 146

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026779|gb|EGI66888.1| T-box transcription factor TBX20 [Acromyrmex echinatior]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 81/89 (91%)

Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSPFTG+QLRKQVVSFEKVKLTNN+MD+HGHLVLNSMHKYQPRIHLVKR +S    P
Sbjct: 59  VHPDSPFTGEQLRKQVVSFEKVKLTNNDMDRHGHLVLNSMHKYQPRIHLVKRPDSGTTKP 118

Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQL 92
           I DLE E +KTFI+PE+IFTAVTAYQNQL
Sbjct: 119 IVDLEKEPHKTFIFPEAIFTAVTAYQNQL 147

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
UNIPROTKB|Q8UW76	440	TBX20 "T-box transcription fac	0.926	0.2	0.666	7.7e-32
UNIPROTKB|E1BGZ6	449	TBX20 "Uncharacterized protein	0.926	0.195	0.666	9.8e-32
UNIPROTKB|J9JHY2	448	TBX20 "Uncharacterized protein	0.926	0.196	0.666	9.8e-32
UNIPROTKB|Q9UMR3	447	TBX20 "T-box transcription fac	0.926	0.196	0.666	9.8e-32
UNIPROTKB|F1SIK8	449	TBX20 "Uncharacterized protein	0.926	0.195	0.666	9.8e-32
MGI|MGI:1888496	445	Tbx20 "T-box 20" [Mus musculus	0.926	0.197	0.666	9.8e-32
RGD|1309396	446	Tbx20 "T-box 20" [Rattus norve	0.926	0.197	0.666	9.8e-32
UNIPROTKB|Q8AXW8	441	tbx20 "T-box transcription fac	0.926	0.199	0.655	6.9e-31
ZFIN|ZDB-GENE-000427-7	447	tbx20 "T-box 20" [Danio rerio	0.926	0.196	0.644	8.8e-31
FB|FBgn0261963	580	mid "midline" [Drosophila mela	0.936	0.153	0.644	6.4e-27

UNIPROTKB|Q8UW76 TBX20 "T-box transcription factor TBX20" [Gallus gallus (taxid:9031)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 60/90 (66%), Positives = 83/90 (92%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   179 VHPDSPFTGEQLMKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 236

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct:   237 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 266

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

UNIPROTKB|E1BGZ6 TBX20 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 60/90 (66%), Positives = 83/90 (92%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   187 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 244

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct:   245 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 274

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|J9JHY2 TBX20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 60/90 (66%), Positives = 83/90 (92%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   186 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 243

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct:   244 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 273

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|Q9UMR3 TBX20 "T-box transcription factor TBX20" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 60/90 (66%), Positives = 83/90 (92%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   185 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 242

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct:   243 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 272

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISS

GO:0003203 "endocardial cushion morphogenesis" evidence=ISS

GO:0003207 "cardiac chamber formation" evidence=ISS

GO:0003344 "pericardium morphogenesis" evidence=ISS

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0021524 "visceral motor neuron differentiation" evidence=ISS

GO:0003279 "cardiac septum development" evidence=ISS

GO:0003272 "endocardial cushion formation" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0003193 "pulmonary valve formation" evidence=ISS

GO:0003175 "tricuspid valve development" evidence=ISS

GO:0001947 "heart looping" evidence=ISS

GO:0035922 "foramen ovale closure" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISS

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISS

GO:0048370 "lateral mesoderm formation" evidence=ISS

GO:0001706 "endoderm formation" evidence=ISS

GO:0060413 "atrial septum morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=IMP

GO:0060577 "pulmonary vein morphogenesis" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|F1SIK8 TBX20 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 60/90 (66%), Positives = 83/90 (92%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   187 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 244

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct:   245 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 274

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:1888496 Tbx20 "T-box 20" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 60/90 (66%), Positives = 83/90 (92%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   184 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 241

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct:   242 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 271

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI;IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO;IDA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO;IDA

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO;IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0003175 "tricuspid valve development" evidence=IMP

GO:0003176 "aortic valve development" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=IMP

GO:0003203 "endocardial cushion morphogenesis" evidence=IMP

GO:0003207 "cardiac chamber formation" evidence=IMP

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IMP

GO:0003272 "endocardial cushion formation" evidence=IMP

GO:0003279 "cardiac septum development" evidence=IMP

GO:0003344 "pericardium morphogenesis" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006936 "muscle contraction" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008015 "blood circulation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0010717 "regulation of epithelial to mesenchymal transition" evidence=NAS

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IDA

GO:0021524 "visceral motor neuron differentiation" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IGI;IMP

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IMP

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

RGD|1309396 Tbx20 "T-box 20" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 60/90 (66%), Positives = 83/90 (92%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   185 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 242

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+PE++FTAVTAYQNQLI
Sbjct:   243 LLNLKSEEFRTFIFPETVFTAVTAYQNQLI 272

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO

GO:0001569 "patterning of blood vessels" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0003175 "tricuspid valve development" evidence=ISO

GO:0003176 "aortic valve development" evidence=ISO

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=ISO

GO:0003203 "endocardial cushion morphogenesis" evidence=ISO

GO:0003207 "cardiac chamber formation" evidence=ISO

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISO

GO:0003272 "endocardial cushion formation" evidence=ISO

GO:0003279 "cardiac septum development" evidence=ISO

GO:0003344 "pericardium morphogenesis" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006936 "muscle contraction" evidence=ISO

GO:0008015 "blood circulation" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=ISO

GO:0021524 "visceral motor neuron differentiation" evidence=ISO

GO:0035050 "embryonic heart tube development" evidence=ISO

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISO

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

UNIPROTKB|Q8AXW8 tbx20 "T-box transcription factor TBX20" [Xenopus laevis (taxid:8355)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 59/90 (65%), Positives = 82/90 (91%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   179 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 236

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TFI+ E++FTAVTAYQNQLI
Sbjct:   237 LLNLKSEEFRTFIFQETVFTAVTAYQNQLI 266

GO:0000578 "embryonic axis specification" evidence=IMP

GO:0001706 "endoderm formation" evidence=IMP

GO:0048370 "lateral mesoderm formation" evidence=IMP

ZFIN|ZDB-GENE-000427-7 tbx20 "T-box 20" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 58/90 (64%), Positives = 82/90 (91%)

Query:     4 LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
             ++PDSPFTG+QL KQ+VSFEKVKLTNNE+D+HGH++LNSMHKYQPR+H++K+ + T +  
Sbjct:   184 VHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKDHTAS-- 241

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             + +L++EE++TF++ E++FTAVTAYQNQLI
Sbjct:   242 LLNLKSEEFRTFVFTETVFTAVTAYQNQLI 271

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007507 "heart development" evidence=IEP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0035844 "cloaca development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0261963 mid "midline" [Drosophila melanogaster (taxid:7227)]

 Score = 309 (113.8 bits), Expect = 6.4e-27, P = 6.4e-27
 Identities = 58/90 (64%), Positives = 76/90 (84%)

Query:     5 YPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVK-RHESTINHP 63
             +PDSPF+ + LRKQV+SFEKVKLTNNEMDK+G +VLNSMH+YQPRIHLV+  H  +I   
Sbjct:   276 HPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSN 335

Query:    64 ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
               +L+  ++KT+++PE++FTAVTAYQNQLI
Sbjct:   336 PKELQDLDHKTYVFPETVFTAVTAYQNQLI 365

GO:0007367 "segment polarity determination" evidence=IMP

GO:0007409 "axonogenesis" evidence=NAS;IMP

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007399 "nervous system development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0042684 "cardioblast cell fate commitment" evidence=IMP

GO:0051890 "regulation of cardioblast differentiation" evidence=IMP

GO:0014019 "neuroblast development" evidence=IMP

GO:0014018 "neuroblast fate specification" evidence=IMP

GO:0003015 "heart process" evidence=IDA

GO:0048665 "neuron fate specification" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007402 "ganglion mother cell fate determination" evidence=IMP

GO:0051960 "regulation of nervous system development" evidence=IMP

GO:0007417 "central nervous system development" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI;IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0042659 "regulation of cell fate specification" evidence=IGI

GO:0035223 "leg disc pattern formation" evidence=IGI

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001226 "RNA polymerase II transcription corepressor binding" evidence=IPI

GO:0001227 "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA;IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SA46	TBX20_XENTR	No assigned EC number	0.6555	0.9263	0.2	yes	N/A
Q94890	H15_DROME	No assigned EC number	0.6444	0.9368	0.1348	yes	N/A
Q9I9K7	TBX20_DANRE	No assigned EC number	0.6444	0.9263	0.1973	yes	N/A
P90971	TBX12_CAEEL	No assigned EC number	0.6483	0.9473	0.2601	yes	N/A
Q8UW76	TBX20_CHICK	No assigned EC number	0.6666	0.9263	0.2	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	4e-40
pfam00907	182	pfam00907, T-box, T-box	2e-38
smart00425	190	smart00425, TBOX, Domain first found in the mice T	2e-33

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score =  130 bits (329), Expect = 4e-40
 Identities = 47/92 (51%), Positives = 63/92 (68%), Gaps = 6/92 (6%)

Query: 2   TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
             ++PDSP TG    KQ VSF+K+KLTNN +D +GH++LNSMHKYQPR+H+V+  +S   
Sbjct: 83  VYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDS--- 139

Query: 62  HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
              +       +TF +PE+ F AVTAYQNQ I
Sbjct: 140 ---SPFSWRLVQTFSFPETEFIAVTAYQNQEI 168

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score =  126 bits (318), Expect = 2e-38
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 7/92 (7%)

Query: 2   TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
             ++PDSP TG    KQ VSF+KVKLTNN++D +GH++LNSMHKYQPR+H+V+  + + +
Sbjct: 81  VYIHPDSPATGAHWMKQPVSFDKVKLTNNKLDGNGHIILNSMHKYQPRLHIVRVDDESPS 140

Query: 62  HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
                      +TF +PE+ F AVTAYQN+ I
Sbjct: 141 QRT-------VRTFSFPETQFIAVTAYQNEEI 165

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score =  113 bits (284), Expect = 2e-33
 Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 8/94 (8%)

Query: 2   TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHL--VLNSMHKYQPRIHLVKRHEST 59
             ++PDSP TG    KQ VSF+KVKLTNN+ DK+GHL  +LNSMHKYQPR+H+V+  + +
Sbjct: 82  VYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDIS 141

Query: 60  INHPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
                      ++KTF++PE+ F AVTAYQNQ I
Sbjct: 142 KEIL------SQFKTFVFPETQFIAVTAYQNQKI 169

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG3586|consensus	437		100.0
cd00182	188	TBOX T-box DNA binding domain of the T-box family	100.0
smart00425	190	TBOX Domain first found in the mice T locus (Brach	100.0
KOG3585|consensus	328		100.0
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	100.0

>KOG3586|consensus

Probab=100.00  E-value=3e-43  Score=265.30  Aligned_cols=93  Identities=54%  Similarity=0.847  Sum_probs=82.2

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      +|+|||||++|+.||++.|||||+|||||++|++|||+|||||||+||+||++.+....... ..+..+.+++|+||||+
T Consensus       163 ~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~~~s~~-~~~~~e~~kTF~FpET~  241 (437)
T KOG3586|consen  163 VYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPGNDSNK-YVEKNEGFKTFVFPETV  241 (437)
T ss_pred             eeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEecCCCCccc-cccccccceeEecccee
Confidence            69999999999999999999999999999999999999999999999999999886532111 02234678999999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |+|||||||++||+
T Consensus       242 FtAVTAYQNq~ITk  255 (437)
T KOG3586|consen  242 FTAVTAYQNQRITK  255 (437)
T ss_pred             EEEEeecccceeee
Confidence            99999999999995

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=100.00  E-value=9e-42  Score=239.24  Aligned_cols=88  Identities=53%  Similarity=0.805  Sum_probs=80.0

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      +|+|||||++|++||+++|+|+||||||+..++.++|.|+|||||+|||||+++++...      .....+++|+||||+
T Consensus        83 ~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~~------~~~~~~~~f~F~eT~  156 (188)
T cd00182          83 VYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSP------FSWRLVQTFSFPETE  156 (188)
T ss_pred             eEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCcc------ccccccEEEECCCeE
Confidence            68999999999999999999999999999999999999999999999999999877532      123457999999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||||||++||.
T Consensus       157 FiAVTaYqN~~It~  170 (188)
T cd00182         157 FIAVTAYQNQEITQ  170 (188)
T ss_pred             EEEEEeecCHhHhh
Confidence            99999999999984

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=100.00  E-value=6.8e-40  Score=230.10  Aligned_cols=88  Identities=57%  Similarity=0.865  Sum_probs=79.1

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcE--EEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccC
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHL--VLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPE   79 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i--~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~e   79 (95)
                      +|+|||||++|++||+++|+|+||||||+..+.+|+|  .|+|||||+|||||+++++....      ..+.+.+|+|||
T Consensus        82 ~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~~~------~~~~~~~f~F~e  155 (190)
T smart00425       82 VYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDISKE------ILSQFKTFVFPE  155 (190)
T ss_pred             eEECCCCccCHHHHhhCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCcccc------cccceeEEECCc
Confidence            6899999999999999999999999999999999997  99999999999999998774321      124568999999


Q ss_pred             cEEEEcCCCcCcccCC
Q psy7373          80 SIFTAVTAYQNQLIFA   95 (95)
Q Consensus        80 T~FiaVTaYqN~~It~   95 (95)
                      |+|||||||||++||.
T Consensus       156 T~FiaVTaYqN~~it~  171 (190)
T smart00425      156 TQFIAVTAYQNQKITK  171 (190)
T ss_pred             eEEEEEeeecccchhh
Confidence            9999999999999984

>KOG3585|consensus

Probab=100.00  E-value=1.1e-36  Score=228.22  Aligned_cols=88  Identities=49%  Similarity=0.730  Sum_probs=79.3

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCc-EEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCc
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGH-LVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPES   80 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~-i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT   80 (95)
                      +|+|||||++|++||+++|+|+||||||++.+.+++ |.|+|||||+|||||+++++...      .....+.+|+|+||
T Consensus       106 ~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~~~~~------~~~~~~~~~~F~eT  179 (328)
T KOG3585|consen  106 VYVHPDGPATGAHWMSEPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELDASLI------SPEISVQSFKFPET  179 (328)
T ss_pred             EEEecCCccchHHHhcCCcccceeEeeccccccCCceEeeecccceeeeEEEEEcccccC------CCccceeEEEcccc
Confidence            689999999999999999999999999999999999 99999999999999999973221      12346899999999


Q ss_pred             EEEEcCCCcCcccCC
Q psy7373          81 IFTAVTAYQNQLIFA   95 (95)
Q Consensus        81 ~FiaVTaYqN~~It~   95 (95)
                      +|||||||||++||.
T Consensus       180 ~FIaVTaYQn~~it~  194 (328)
T KOG3585|consen  180 QFIAVTAYQNQEITK  194 (328)
T ss_pred             eeEEeeeeecceehh
Confidence            999999999999984

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=100.00  E-value=9.8e-36  Score=207.11  Aligned_cols=89  Identities=46%  Similarity=0.698  Sum_probs=68.2

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      .++|||||++|+.||+++|+|+++||||+..++.++|.|+|||||+|+|+|++++++....     ....+.+|+||||+
T Consensus        81 ~~~h~~~~~~G~~WM~~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~~~~-----~~~~~~~f~f~~t~  155 (184)
T PF00907_consen   81 VVIHPDGPQTGSEWMKNGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNGSPS-----PNQPVHEFSFPETE  155 (184)
T ss_dssp             -EE-TT-SEEHHHHHHS-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTSCCC-----SCSSEEEEE-GGG-
T ss_pred             EEEEecCcCCHHHhCcccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCccccc-----cccceEEeecCcCe
Confidence            5899999999999999999999999999998888889999999999999999998853210     13468999999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||+|||++|++
T Consensus       156 FIaVT~Yqn~~I~~  169 (184)
T PF00907_consen  156 FIAVTAYQNEEIRQ  169 (184)
T ss_dssp             EEEESS-SSHHHHH
T ss_pred             EEeecccchhhhhh
Confidence            99999999999973

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
4a04_A	203	Structure Of The Dna-Bound T-Box Domain Of Human Tb		5e-21
1h6f_A	193	Human Tbx3, A Transcription Factor Responsible For		8e-21
2x6u_A	203	Crystal Structure Of Human Tbx5 In The Dna-Free For		8e-20
1xbr_A	184	T Domain From Xenopus Laevis Bound To Dna Length =		3e-13

>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 9/92 (9%)
Query: 5   YPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPI 64
           +PDSP  G Q  KQ+VSF+K+KLTNN +D +GH++LNSMH+YQPR H+V         P 
Sbjct: 102 HPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVV------YVDPR 155
Query: 65  TDLEA---EEYKTFIYPESIFTAVTAYQNQLI 93
            D E    E +KTF++ E+ FTAVTAYQN  I
Sbjct: 156 KDSEKYAEENFKTFVFEETRFTAVTAYQNHRI 187

>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 6/90 (6%)
Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSP TG+Q   +VV+F K+KLTNN  DKHG  +LNSMHKYQPR H+V+ ++      
Sbjct: 88  IHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND------ 141
Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
           I  L    ++T+++PE+ F AVTAYQN  I
Sbjct: 142 ILKLPYSTFRTYLFPETEFIAVTAYQNDKI 171

>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSP TG    +Q+VSF+K+KLTNN +D  GH++LNSMHKYQPR+H+VK  E+     
Sbjct: 89  VHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENN---- 144
Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
               +   + T ++PE+ F AVT+YQN  I
Sbjct: 145 GFGSKNTAFCTHVFPETAFIAVTSYQNHKI 174

>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 11/92 (11%)
Query: 4   LYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHP 63
           ++PDSP  G    K  VSF KVKLTN +M+  G ++LNS+HKY+PRIH+V+         
Sbjct: 85  IHPDSPNFGAHWMKDPVSFSKVKLTN-KMNGGGQIMLNSLHKYEPRIHIVR--VGGTQRM 141
Query: 64  ITDLEAEEYKTFIYPESIFTAVTAYQNQLIFA 95
           IT        +  +PE+ F AVTAYQN+ I A
Sbjct: 142 IT--------SHSFPETQFIAVTAYQNEEITA 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
2x6u_A	203	T-box transcription factor TBX5; developmental pro	1e-23
1h6f_A	193	T-box transcription factor TBX3; transcription fac	1e-22
4a04_A	203	T-box transcription factor TBX1; transcription, T-	2e-22
1xbr_A	184	Protein (T protein); complex (transcription factor	1e-17

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score = 88.3 bits (218), Expect = 1e-23
 Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 4/91 (4%)

Query: 3   VLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINH 62
            ++PDSP TG    +Q+VSF+K+KLTNN +D  GH++LNSMHKYQPR+H+VK  E+    
Sbjct: 88  YVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFG 147

Query: 63  PITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
                +   + T ++PE+ F AVT+YQN  I
Sbjct: 148 S----KNTAFCTHVFPETAFIAVTSYQNHKI 174

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score = 85.6 bits (211), Expect = 1e-22
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 6/92 (6%)

Query: 2   TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
             ++PDSP TG+Q   +VV+F K+KLTNN  DKHG  +LNSMHKYQPR H+V+ ++    
Sbjct: 86  MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND---- 141

Query: 62  HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             I  L    ++T+++PE+ F AVTAYQN  I
Sbjct: 142 --ILKLPYSTFRTYLFPETEFIAVTAYQNDKI 171

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score = 84.9 bits (209), Expect = 2e-22
 Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 3   VLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINH 62
             +PDSP  G Q  KQ+VSF+K+KLTNN +D +GH++LNSMH+YQPR H+V         
Sbjct: 100 HYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDP---RK 156

Query: 63  PITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
                  E +KTF++ E+ FTAVTAYQN  I
Sbjct: 157 DSEKYAEENFKTFVFEETRFTAVTAYQNHRI 187

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score = 72.1 bits (176), Expect = 1e-17
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 2   TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
             ++PDSP  G    K  VSF KVKLTN  M+  G ++LNS+HKY+PRIH+V+       
Sbjct: 83  VYIHPDSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQIMLNSLHKYEPRIHIVR------- 134

Query: 62  HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
                       +  +PE+ F AVTAYQN+ I
Sbjct: 135 ---VGGTQRMITSHSFPETQFIAVTAYQNEEI 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2x6u_A	203	T-box transcription factor TBX5; developmental pro	100.0
1h6f_A	193	T-box transcription factor TBX3; transcription fac	100.0
4a04_A	203	T-box transcription factor TBX1; transcription, T-	100.0
1xbr_A	184	Protein (T protein); complex (transcription factor	100.0

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=100.00  E-value=1.4e-43  Score=249.81  Aligned_cols=90  Identities=49%  Similarity=0.783  Sum_probs=80.1

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      +|+|||||++|++||+++|+|+|||||||..|..|+|.|+|||||+|||||+++++... .+   .....+++|+||||+
T Consensus        87 ~y~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~-~~---~~~~~~~tf~FpeT~  162 (203)
T 2x6u_A           87 LYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNG-FG---SKNTAFCTHVFPETA  162 (203)
T ss_dssp             CEECTTCSEEHHHHHHSCEECTTCEEECCTTCSSCCEECCTTEEEEEEEEEEECCTTSC-SS---SSCCCEEEECCGGGC
T ss_pred             eEECCCCccchHHHhhCCceeeeeeceeccCCccceEeecCCceEEEEEEEEEeCCccc-cC---cCccceEEEEcCCcE
Confidence            68999999999999999999999999999999999999999999999999999876421 11   123468999999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||||||++||+
T Consensus       163 FiAVTaYQN~~It~  176 (203)
T 2x6u_A          163 FIAVTSYQNHKITQ  176 (203)
T ss_dssp             EEEESSCCSHHHHH
T ss_pred             EEEEeeecchhhhh
Confidence            99999999999973

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=100.00  E-value=9.6e-44  Score=249.10  Aligned_cols=88  Identities=51%  Similarity=0.825  Sum_probs=79.8

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      +|+|||||++|++||+++|+|+|||||||..+++|+|.|+|||||+|||||+++++..      .++.+.+++|+||||+
T Consensus        86 ~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~~~~------~~~~~~~~tf~FpeT~  159 (193)
T 1h6f_A           86 MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL------KLPYSTFRTYLFPETE  159 (193)
T ss_dssp             CEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGG------GGGGSCCEEEECGGGC
T ss_pred             eEecCCCcccHHHHhhCCcceeeeeeeccCCCCCCcEEecCCceEeeEEEEEEcCCcc------CCCCcceEEEECCCeE
Confidence            6899999999999999999999999999999999999999999999999999987632      1233568999999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||||||++||+
T Consensus       160 FiAVTaYQN~~It~  173 (193)
T 1h6f_A          160 FIAVTAYQNDKITQ  173 (193)
T ss_dssp             EEEESSCSCHHHHH
T ss_pred             EEEEeccCchhhhh
Confidence            99999999999973

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=100.00  E-value=7.6e-43  Score=246.15  Aligned_cols=91  Identities=51%  Similarity=0.779  Sum_probs=78.8

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      +|+|||||++|++||+++|+|+|||||||..+++|+|.|+|||||+|||||+++++.+..   ..++.+.+++|+||||+
T Consensus        99 ~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~~---~~~~~~~~~tf~FpeT~  175 (203)
T 4a04_A           99 VHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDS---EKYAEENFKTFVFEETR  175 (203)
T ss_dssp             CCBCTTCSEEHHHHHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCCC-----------CCEEEEECGGGC
T ss_pred             eEEcCCCCcCHHHHhhCcceeeeeecccCccCcCCEEEEeeccccccEEEEEEcCCCccc---ccccCCceEEEECCCcE
Confidence            689999999999999999999999999999999999999999999999999998764211   12334568999999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||||||++||+
T Consensus       176 FiAVTaYQN~~It~  189 (203)
T 4a04_A          176 FTAVTAYQNHRITQ  189 (203)
T ss_dssp             EEEESSCCCHHHHH
T ss_pred             EEeeCccCCHHHHH
Confidence            99999999999984

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=100.00  E-value=2.9e-42  Score=240.07  Aligned_cols=83  Identities=47%  Similarity=0.703  Sum_probs=75.9

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      .|+|||||++|++||+++|+|+|||||||. +..|+|.|+|||||+|||||+++++.          ...+++|+||||+
T Consensus        83 ~~~Hpdsp~~G~~WM~~~VsF~klKlTNn~-~~~~~i~L~SmHKY~PrlhI~~~~~~----------~~~~~tf~FpeT~  151 (184)
T 1xbr_A           83 VYIHPDSPNFGAHWMKDPVSFSKVKLTNKM-NGGGQIMLNSLHKYEPRIHIVRVGGT----------QRMITSHSFPETQ  151 (184)
T ss_dssp             CEECTTCSEEHHHHHHSCEECTTCEEESSC-CTTTCEECCSSSEEEEEEEEEEESSS----------SCCEEEEECGGGC
T ss_pred             eEECCCCchhHHHHhhCCceeccccccccC-CCCCeEEeccCceEEEEEEEEEeCCC----------cceEEEEECCCcE
Confidence            689999999999999999999999999995 66789999999999999999998763          1347899999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||||||++||+
T Consensus       152 FiAVTaYQN~~It~  165 (184)
T 1xbr_A          152 FIAVTAYQNEEITA  165 (184)
T ss_dssp             EEEESSCCCHHHHH
T ss_pred             EEEEeccCChhHhh
Confidence            99999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	2e-31
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	5e-28

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 2e-31
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 6/92 (6%)

Query: 2   TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
             ++PDSP TG+Q   +VV+F K+KLTNN  DKHG  +LNSMHKYQPR H+V+ ++    
Sbjct: 83  MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND---- 138

Query: 62  HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             I  L    ++T+++PE+ F AVTAYQN  I
Sbjct: 139 --ILKLPYSTFRTYLFPETEFIAVTAYQNDKI 168

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 98.0 bits (244), Expect = 5e-28
 Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 11/91 (12%)

Query: 3   VLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINH 62
            ++PDSP  G    K  VSF KVKLTN  M+  G ++LNS+HKY+PRIH+V+   +    
Sbjct: 84  YIHPDSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQIMLNSLHKYEPRIHIVRVGGTQ--- 139

Query: 63  PITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
                      +  +PE+ F AVTAYQN+ I
Sbjct: 140 -------RMITSHSFPETQFIAVTAYQNEEI 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1xbra_	184	T domain from Brachyury transcription factor {Afri	100.0

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=239.99  Aligned_cols=88  Identities=51%  Similarity=0.815  Sum_probs=79.5

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      .|+|||||++|++||+++|+|+++||||+..+++|+|.|+|||||+|||||+++++...      .....+++|+||||+
T Consensus        83 ~~~Hpdsp~tG~~WM~~~i~F~k~KltN~~~~~~~~i~L~SmhKYqPrl~I~~~~~~~~------~~~~~~~~f~FpeT~  156 (184)
T d1h6fa_          83 MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILK------LPYSTFRTYLFPETE  156 (184)
T ss_dssp             CEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGGG------GGGSCCEEEECGGGC
T ss_pred             eEECCCCCcCHHHHHhCccccchhhhcCCccCcccchhHhhcccCCCeEEEEEeCCCCC------CCccceEEEECCCeE
Confidence            68999999999999999999999999999999999999999999999999999876421      223457899999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||||||++||+
T Consensus       157 FiAVTaYQN~~It~  170 (184)
T d1h6fa_         157 FIAVTAYQNDKITQ  170 (184)
T ss_dssp             EEEESSCSCHHHHH
T ss_pred             EEEEccccchhHHH
Confidence            99999999999973

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=3.5e-42  Score=237.89  Aligned_cols=83  Identities=48%  Similarity=0.729  Sum_probs=76.0

Q ss_pred             ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373           2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI   81 (95)
Q Consensus         2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~   81 (95)
                      +|+|||||++|++||+++|+|++|||||+ .++.|+|.|+|||||+|||||+++++..          ....+|+||||+
T Consensus        83 ~~~Hpdsp~tG~~WM~~~i~F~klKlTN~-~~~~~~i~L~SmHKYqPrl~I~~~~~~~----------~~~~~f~FpeT~  151 (184)
T d1xbra_          83 VYIHPDSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQIMLNSLHKYEPRIHIVRVGGTQ----------RMITSHSFPETQ  151 (184)
T ss_dssp             CEECTTCSEEHHHHHHSCEECTTCEEESS-CCTTTCEECCSSSEEEEEEEEEEESSSS----------CCEEEEECGGGC
T ss_pred             eEECCCCCcCHHHHhhCccccceeeeecc-CCCCCceEEecccceeeeEEEEEeCCCc----------cceeEEEcCCeE
Confidence            58999999999999999999999999998 5778999999999999999999987642          246899999999


Q ss_pred             EEEcCCCcCcccCC
Q psy7373          82 FTAVTAYQNQLIFA   95 (95)
Q Consensus        82 FiaVTaYqN~~It~   95 (95)
                      |||||||||++||+
T Consensus       152 FiaVTaYQN~~It~  165 (184)
T d1xbra_         152 FIAVTAYQNEEITA  165 (184)
T ss_dssp             EEEESSCCCHHHHH
T ss_pred             EEEEeecCcHHHhH
Confidence            99999999999973