Psyllid ID: psy7376

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHRL

cccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccEEcccccccccEEEEEEcccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHccc

cccccccccEcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHcc

mniadhevfafpseeeadkvlsipdVEQRIKDVLMVLGNfkqyrdparsrcEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLeasetqrpltirtNTLKTRRRDLAQALVNrgvnldpigkwsKVGLVIYNstvpigatpeYLGAALMKNTGVLFANDVSKERSKAIVGNFHRL

mniadhevfafpseeeadkvlsipdVEQRIKDVLMVLgnfkqyrdparsrCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEasetqrpltirtntlktrrRDLAQAlvnrgvnldpigkwsKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFandvskerskaivgnfhrl

MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHRL

*******************VLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDV***************

******E*******************EQRIKDVLMVLGNFKQYRDP*RSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHRL

MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHRL

*N***HEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHRL

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MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHRL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		180	2.2.26 [Sep-21-2011]
Q922K7		793	Putative ribosomal RNA me	yes	N/A	1.0	0.226	0.490	5e-56
P46087		812	Putative ribosomal RNA me	yes	N/A	0.977	0.216	0.486	1e-53
O94268		608	Putative ribosomal RNA me	yes	N/A	0.861	0.254	0.463	1e-46
P40991		618	Putative ribosomal RNA me	yes	N/A	0.844	0.245	0.481	3e-45
Q87PA5		478	Ribosomal RNA small subun	yes	N/A	0.588	0.221	0.283	2e-05

>sp\|Q922K7\|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1	Back alignment and function desciption

 Score =  216 bits (551), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 139/222 (62%), Gaps = 42/222 (18%)

Query: 1   MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
           +N+ D E F  P   E D+    PD   V +RI+D++ VL +F   R+  RSR EY S L
Sbjct: 196 INVEDEEAFVLPPAGETDQDGQAPDLQRVHKRIQDIVGVLRDFGAQREEGRSRAEYLSRL 255

Query: 58  LKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVN 117
            KDL TY+SY +FL+ ++M++FPL EL+ FLEA+E  RP+T+RTNTLKTRRRDLAQ L+N
Sbjct: 256 QKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQLLIN 315

Query: 118 RGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG--------------------------- 150
           RGVNLDP+GKWSK GLV+Y+S+VPIGATPEYL                            
Sbjct: 316 RGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILD 375

Query: 151 ------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
                       A LMKNTGV+ AND + +R K++VGN HRL
Sbjct: 376 MCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRL 417

May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp\|P46087\|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2	Back alignment and function description

>sp\|O94268\|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.20c PE=1 SV=1	Back alignment and function description

>sp\|P40991\|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1 SV=1	Back alignment and function description

>sp\|Q87PA5\|RSMF_VIBPA Ribosomal RNA small subunit methyltransferase F OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rsmF PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		180
193638967		657	PREDICTED: putative ribosomal RNA methyl	1.0	0.273	0.598	2e-71
357609454		666	hypothetical protein KGM_08224 [Danaus p	1.0	0.270	0.602	6e-70
307182612		696	Putative RNA methyltransferase NOL1 [Cam	0.988	0.255	0.576	3e-67
383851252		596	PREDICTED: putative ribosomal RNA methyl	0.955	0.288	0.603	7e-67
345481794		786	PREDICTED: putative ribosomal RNA methyl	0.988	0.226	0.571	9e-67
332018753		677	Putative ribosomal RNA methyltransferase	0.972	0.258	0.579	9e-67
328784827		657	PREDICTED: putative ribosomal RNA methyl	0.961	0.263	0.594	1e-66
91090670		731	PREDICTED: similar to CG8545 CG8545-PA [	1.0	0.246	0.579	1e-66
340726578		602	PREDICTED: putative ribosomal RNA methyl	0.961	0.287	0.599	3e-66
350418300		604	PREDICTED: putative ribosomal RNA methyl	0.961	0.286	0.594	1e-65

>gi\|193638967\|ref\|XP_001943714.1\| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/219 (59%), Positives = 160/219 (73%), Gaps = 39/219 (17%)

Query: 1   MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKD 60
           +N+A  +VF FP+ ++ D+ + IP+VEQRIKD+L+VL NF ++R+  RSR EYT LLLKD
Sbjct: 228 INVASQDVFVFPASDKIDEHIPIPEVEQRIKDILLVLSNFNKFREENRSRQEYTELLLKD 287

Query: 61  LCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGV 120
           LCTYFSYN FLME++M +FPL++LMSFLEASET RP+TIRTN+LKTRRRDLAQAL+NRGV
Sbjct: 288 LCTYFSYNTFLMEKMMHLFPLEDLMSFLEASETPRPVTIRTNSLKTRRRDLAQALINRGV 347

Query: 121 NLDPIGKWSKVGLVIYNSTVPIGATPEYLG------------------------------ 150
           NLDPIG WSKVGLV+YNSTVPIGATPEYL                               
Sbjct: 348 NLDPIGNWSKVGLVVYNSTVPIGATPEYLAGHYMLQAASSMLPVMALAPQENELILDMCS 407

Query: 151 ---------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
                    AA+MKNTGVL ANDV+K R+KA++GNFHR+
Sbjct: 408 APGGKASHIAAIMKNTGVLIANDVNKNRAKAVIGNFHRM 446

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|357609454\|gb\|EHJ66457.1\| hypothetical protein KGM_08224 [Danaus plexippus]	Back alignment and taxonomy information

>gi\|307182612\|gb\|EFN69780.1\| Putative RNA methyltransferase NOL1 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|383851252\|ref\|XP_003701148.1\| PREDICTED: putative ribosomal RNA methyltransferase nop2-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|345481794\|ref\|XP_001604770.2\| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|332018753\|gb\|EGI59318.1\| Putative ribosomal RNA methyltransferase NOP2 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|328784827\|ref\|XP_001121968.2\| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|91090670\|ref\|XP_974410.1\| PREDICTED: similar to CG8545 CG8545-PA [Tribolium castaneum] gi\|270013309\|gb\|EFA09757.1\| hypothetical protein TcasGA2_TC011896 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|340726578\|ref\|XP_003401633.1\| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350418300\|ref\|XP_003491816.1\| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Bombus impatiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		180
FB\|FBgn0033741		891	CG8545 [Drosophila melanogaste	0.822	0.166	0.664	3.3e-58
RGD\|1304616		772	Nop2 "NOP2 nucleolar protein"	0.855	0.199	0.573	1e-53
MGI\|MGI:107891		793	Nop2 "NOP2 nucleolar protein"	0.855	0.194	0.579	2.8e-53
UNIPROTKB\|F1N3G2		820	NOP2 "Uncharacterized protein"	0.855	0.187	0.566	3.2e-52
UNIPROTKB\|F1SLR6		821	NOP2 "Uncharacterized protein"	0.855	0.187	0.566	3.2e-52
UNIPROTKB\|F1NH85		549	Gga.5513 "Uncharacterized prot	0.85	0.278	0.571	7.7e-52
UNIPROTKB\|F1NK16		722	Gga.5513 "Uncharacterized prot	0.855	0.213	0.574	1.6e-51
UNIPROTKB\|P46087		812	NOP2 "Putative ribosomal RNA m	0.85	0.188	0.560	3.8e-51
UNIPROTKB\|E2RCH6		826	NOP2 "Uncharacterized protein"	0.855	0.186	0.557	3.3e-50
WB\|WBGene00021073		664	nol-1 [Caenorhabditis elegans	0.855	0.231	0.515	4.9e-49

FB\|FBgn0033741 CG8545 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 514 (186.0 bits), Expect = 3.3e-58, Sum P(2) = 3.3e-58
 Identities = 99/149 (66%), Positives = 120/149 (80%)

Query:     7 EVFAFPSE-EEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYF 65
             +VF  P E EE +K L++ +V+QRIKDV +VL +FK+YR   RSR EY  LL +DLC Y+
Sbjct:   270 DVFQLPVEGEETEKDLTLQEVQQRIKDVSLVLSDFKRYRQADRSRGEYIDLLRRDLCLYY 329

Query:    66 SYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPI 125
             SYNEFLME++M + PL ELM +LEASE  RPLTIRTNTLKTRRRDLA AL+NRGVNLDP+
Sbjct:   330 SYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPL 389

Query:   126 GKWSKVGLVIYNSTVPIGATPEYLGAALM 154
             GKW+KVGLV++NS VP+GATPEYL    M
Sbjct:   390 GKWTKVGLVVFNSQVPLGATPEYLAGHYM 418

GO:0005730 "nucleolus" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

RGD\|1304616 Nop2 "NOP2 nucleolar protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:107891 Nop2 "NOP2 nucleolar protein" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N3G2 NOP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SLR6 NOP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NH85 Gga.5513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NK16 Gga.5513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|P46087 NOP2 "Putative ribosomal RNA methyltransferase NOP2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCH6 NOP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

WB\|WBGene00021073 nol-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		180
pfam01189		277	pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family	3e-20
TIGR00446		264	TIGR00446, nop2p, NOL1/NOP2/sun family putative RN	3e-19
COG0144		355	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases	1e-15
PRK14903		431	PRK14903, PRK14903, 16S rRNA methyltransferase B;	4e-06
PRK11933		470	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf	5e-06
PRK14902		444	PRK14902, PRK14902, 16S rRNA methyltransferase B;	4e-05

>gnl\|CDD\|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family	Back alignment and domain information

 Score = 84.7 bits (210), Expect = 3e-20
 Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 40/133 (30%)

Query: 87  FLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATP 146
            LEA+    P T+R N LKT+R  L QAL   GV L+P+G++    L + +    IG+ P
Sbjct: 1   ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPH-ALPVGDLPYSIGSLP 59

Query: 147 EYL---------------------------------------GAALMKNTGVLFANDVSK 167
            +                                         A LMKN G + A D +K
Sbjct: 60  PFENGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNK 119

Query: 168 ERSKAIVGNFHRL 180
           +R K +  N  RL
Sbjct: 120 QRLKRVYANIQRL 132

Length = 277

>gnl\|CDD\|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase	Back alignment and domain information

>gnl\|CDD\|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>gnl\|CDD\|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed	Back alignment and domain information

>gnl\|CDD\|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		180
PRK14901		434	16S rRNA methyltransferase B; Provisional	99.96
PRK14903		431	16S rRNA methyltransferase B; Provisional	99.96
TIGR00563		426	rsmB ribosomal RNA small subunit methyltransferase	99.94
PRK14902		444	16S rRNA methyltransferase B; Provisional	99.94
PRK10901		427	16S rRNA methyltransferase B; Provisional	99.94
PRK14904		445	16S rRNA methyltransferase B; Provisional	99.92
COG0144		355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.89
PRK11933		470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.82
KOG1122\|consensus		460		99.56
PF01189		283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.56
TIGR00446		264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.99
cd00620		126	Methyltransferase_Sun N-terminal RNA binding domai	97.06
KOG2360\|consensus		413		97.02
cd00447		129	NusB_Sun RNA binding domain of NusB (N protein-Uti	96.9
TIGR01951		129	nusB transcription antitermination factor NusB. A	96.89
cd00619		130	Terminator_NusB Transcription termination factor N	96.85
PRK00202		137	nusB transcription antitermination protein NusB; R	96.71
KOG2198\|consensus		375		94.94
COG2242		187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	90.58
PRK09328		275	N5-glutamine S-adenosyl-L-methionine-dependent met	85.59

>PRK14901 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

Probab=99.96  E-value=1.5e-29  Score=221.04  Aligned_cols=167  Identities=22%  Similarity=0.302  Sum_probs=142.9

Q ss_pred             CChHHhhccCChhHHH---HHHhHHHHHHhhhhhccccccchhhhhhHHhhhhhhhhcCcHHHHHHHHHhCCHHHHHHHH
Q psy7376          12 PSEEEADKVLSIPDVE---QRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFL   88 (180)
Q Consensus        12 ~~~~~~~~~~~~~~~~---~~~~~VNaVLR~~~r~~~~~~~~~~~~~~~~~~lsi~yS~P~Wlv~~~~~~~G~e~~~~il   88 (180)
                      |...-++|.|+++|.+   ..+||||||||++.|..+...... ...++..+++++||+|.||+++|.+.||.+++++++
T Consensus        92 p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~-~~~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~  170 (434)
T PRK14901         92 PASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLP-LPEDPIERLAILHSFPDWLVKLWLEWLGLEEAEQLC  170 (434)
T ss_pred             CcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhcccccc-CCcChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHH
Confidence            8888899999999987   368999999999999744211000 112345678999999999999999999999999999


Q ss_pred             HHhCCCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEeccCCCCCCCHHHHH------------------
Q psy7376          89 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG------------------  150 (180)
Q Consensus        89 ~a~~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~~~~~l~~~p~f~~------------------  150 (180)
                      ++++++||+++||||+|++++++.+.|++.|+.++++ +++|+++++.....++..+|+|.+                  
T Consensus       171 ~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~  249 (434)
T PRK14901        171 KWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPI-PGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLD  249 (434)
T ss_pred             HHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEEC-CCCCCeEEecCCCCccccChHHhCCeEEEECHHHHHHHHHhC
Confidence            9999999999999999999999999999999999987 899999999753235778888875                  


Q ss_pred             ---------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376         151 ---------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL  180 (180)
Q Consensus       151 ---------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL  180 (180)
                                           |++|++.|+|+|+|++++|++.+++|++|+
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~  300 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL  300 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence                                 677788899999999999999999999874

>PRK14903 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB	Back alignment and domain information

>PRK14902 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>PRK10901 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>PRK14904 16S rRNA methyltransferase B; Provisional	Back alignment and domain information

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed	Back alignment and domain information

>KOG1122\|consensus	Back alignment and domain information

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins	Back alignment and domain information

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase	Back alignment and domain information

>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun	Back alignment and domain information

>KOG2360\|consensus	Back alignment and domain information

>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins	Back alignment and domain information

>TIGR01951 nusB transcription antitermination factor NusB	Back alignment and domain information

>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B)	Back alignment and domain information

>PRK00202 nusB transcription antitermination protein NusB; Reviewed	Back alignment and domain information

>KOG2198\|consensus	Back alignment and domain information

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]	Back alignment and domain information

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		180
1ixk_A		315	Crystal Structure Analysis Of Methyltransferase Hom		2e-04

>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315

Back alignment and structure

Iteration: 1

Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%) Query: 65 FSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDP 124 Y++ +R Q++ + + EA E P R NTLK +DL + L +G Sbjct: 14 LGYSKLFADRYFQLWG-ERAIRIAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKR 72 Query: 125 IGKWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVS 166 + W+K G + I +TPE+L TG+++ + S Sbjct: 73 V-PWAKEGFCLTREPFSITSTPEFL-------TGLIYIQEAS 106

PyMOL of 1ixk

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		180
1ixk_A		315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	2e-45
2frx_A		479	Hypothetical protein YEBU; rossmann-type S-adenosy	4e-36
3m6w_A		464	RRNA methylase; rRNA methyltransferase, 5-methylcy	5e-32
3ajd_A		274	Putative methyltransferase MJ0026; tRNA, M5C, ross	7e-32
3m4x_A		456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	3e-30
2b9e_A		309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	4e-27
2yxl_A		450	PH0851 protein, 450AA long hypothetical FMU protei	4e-13
1sqg_A		429	SUN protein, FMU protein; rossmann-fold, mixed bet	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315	Back alignment and structure

 Score =  151 bits (383), Expect = 2e-45
 Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 41/162 (25%)

Query: 58  LKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVN 117
           + D      Y++   +R  Q++  +  +   EA E   P   R NTLK   +DL + L  
Sbjct: 7   MLDKLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNK 65

Query: 118 RGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG--------------------------- 150
           +G     +  W+K G  +      I +TPE+L                            
Sbjct: 66  KGFQFKRV-PWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVAD 124

Query: 151 ------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
                       A LM+N GV++A DV + R +    N  RL
Sbjct: 125 MAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL 166

PyMOL of 1ixk

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479	Back alignment and structure

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464	Back alignment and structure

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274	Back alignment and structure

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456	Back alignment and structure

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309	Back alignment and structure

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450	Back alignment and structure

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		180
2yxl_A		450	PH0851 protein, 450AA long hypothetical FMU protei	99.95
1sqg_A		429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.93
1ixk_A		315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.89
2frx_A		479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.78
3m6w_A		464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.75
3m4x_A		456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.68
2b9e_A		309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.32
3ajd_A		274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.28
4fzv_A		359	Putative methyltransferase NSUN4; mterf fold, meth	98.41
1tzv_A		142	NUSB protein, N utilization substance protein B ho	97.02
3d3b_A		141	Protein NUSB, N utilization substance protein B; N	96.89
1eyv_A		156	NUSB protein, N-utilizing substance protein B homo	96.89
3r2d_A		149	Protein NUSB, N utilization substance protein B; c	96.86
1nv8_A		284	HEMK protein; class I adoMet-dependent methyltrans	88.94
3id6_C		232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	86.7
4df3_A		233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	84.9

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}	Back alignment and structure

Probab=99.95  E-value=5.9e-27  Score=203.98  Aligned_cols=160  Identities=24%  Similarity=0.280  Sum_probs=138.8

Q ss_pred             CCChHHhh----ccCChhHHH---HHHhHHHHHHhhhhhccccccchhhhhhHHhhhhhhhhcCcHHHHHHHHHhCCHHH
Q psy7376          11 FPSEEEAD----KVLSIPDVE---QRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE   83 (180)
Q Consensus        11 ~~~~~~~~----~~~~~~~~~---~~~~~VNaVLR~~~r~~~~~~~~~~~~~~~~~~lsi~yS~P~Wlv~~~~~~~G~e~   83 (180)
                      .|...-++    |.|+++|..   ...+|||||||++.|.+....       +....++++||||.||+++|.+.|| ++
T Consensus       101 ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~~~~~-------~~~~~~~~~~~~P~w~~~~~~~~~g-~~  172 (450)
T 2yxl_A          101 DPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPK-------NELEELEWKYLAPSWLIERVKGILG-DE  172 (450)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCCCCCC-------SHHHHHHHHHTSCHHHHHHHHHHHG-GG
T ss_pred             CCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhcccccc-------chhhhhhhHhcCcHHHHHHHHHHhh-HH
Confidence            57777778    899999986   357999999999999752211       2345689999999999999999999 88


Q ss_pred             HHHHHHHhC-CCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEeccCCCCCCCHHHHH------------
Q psy7376          84 LMSFLEASE-TQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG------------  150 (180)
Q Consensus        84 ~~~il~a~~-~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~~~~~l~~~p~f~~------------  150 (180)
                      +++++++++ ++||+++|||++|++++++++.|++.|+.+.++ +++|+++.+... .++..+|+|..            
T Consensus       173 ~~~~~~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~s~l  250 (450)
T 2yxl_A          173 TEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRS-ERVPTILKIKGP-YNFDTSSAFNEGKIIVQEEASAV  250 (450)
T ss_dssp             HHHHHHHHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEEC-SSCTTEEEEESC-CCTTSCHHHHTTSEEECCHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceec-CccCceEEeCCC-CCcccCchhhCceEEecCchhHH
Confidence            999999999 999999999999999999999999999999887 899999999643 47888898876            


Q ss_pred             ---------------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376         151 ---------------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL  180 (180)
Q Consensus       151 ---------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL  180 (180)
                                                 |+++.+.|+|+|+|++++|++.+++|++|+
T Consensus       251 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~  307 (450)
T 2yxl_A          251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM  307 (450)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence                                       666767799999999999999999998864

PyMOL of 2yxl

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A	Back alignment and structure

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38	Back alignment and structure

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}	Back alignment and structure

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*	Back alignment and structure

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}	Back alignment and structure

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38	Back alignment and structure

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A	Back alignment and structure

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*	Back alignment and structure

>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*	Back alignment and structure

>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A	Back alignment and structure

>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1	Back alignment and structure

>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A	Back alignment and structure

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*	Back alignment and structure

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*	Back alignment and structure

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		180
d1ixka_		313	c.66.1.38 (A:) Hypothetical methyltransferase PH13	1e-16
d1sqga2		284	c.66.1.38 (A:145-428) Ribosomal RNA small subunit	2e-10
d2b9ea1		293	c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens)	3e-07

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 73.9 bits (180), Expect = 1e-16
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 65  FSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDP 124
             Y++   +R  Q++  +  +   EA E   P   R NTLK   +DL + L  +G     
Sbjct: 12  LGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKR 70

Query: 125 IGKWSKVGLVIYNSTVPIGATPEYL 149
           +  W+K G  +      I +TPE+L
Sbjct: 71  V-PWAKEGFCLTREPFSITSTPEFL 94

PyMOL of d1ixka_

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284	Back information, alignment and structure

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		180
d1ixka_		313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.89
d1sqga2		284	Ribosomal RNA small subunit methyltransferase B, R	99.84
d2b9ea1		293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1sqga1		140	Ribosomal RNA small subunit methyltransferase B, R	97.35
d1tzva_		141	Antitermination factor NusB {Thermotoga maritima [	96.64
d1ey1a_		139	Antitermination factor NusB {Escherichia coli [Tax	95.46
d1g8aa_		227	Fibrillarin homologue {Archaeon Pyrococcus horikos	89.46
d1o54a_		266	Hypothetical protein TM0748 {Thermotoga maritima [	84.48
d1nt2a_		209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	84.41

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=2.7e-23  Score=171.59  Aligned_cols=120  Identities=33%  Similarity=0.575  Sum_probs=109.2

Q ss_pred             hhhhhhhhcCcHHHHHHHHHhCCHHHHHHHHHHhCCCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEec
Q psy7376          58 LKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYN  137 (180)
Q Consensus        58 ~~~lsi~yS~P~Wlv~~~~~~~G~e~~~~il~a~~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~  137 (180)
                      ++.+ ++||||.||+++|.+.|| ++++++++++++++|+++||||+|++++++++.|++.|+.++++ +++|+++.+..
T Consensus         6 ~~~~-~~~~~p~wl~~~~~~~~G-ee~~~l~~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~-~~~~~~~~~~~   82 (313)
T d1ixka_           6 LDKL-LRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTR   82 (313)
T ss_dssp             HHHH-HHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE-TTEEEEEEEEE
T ss_pred             hhHH-HHcCCCHHHHHHHHHHhh-HHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEEC-CCCcchhhhcc
Confidence            3444 799999999999999999 56899999999999999999999999999999999999999997 89999999876


Q ss_pred             cCCCCCCCHHHHH---------------------------------------HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376         138 STVPIGATPEYLG---------------------------------------AALMKNTGVLFANDVSKERSKAIVGNFH  178 (180)
Q Consensus       138 ~~~~l~~~p~f~~---------------------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~  178 (180)
                      ...++..+++|.+                                       |++|.++|.|+|+|++++|++.+++|++
T Consensus        83 ~~~~l~~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~  162 (313)
T d1ixka_          83 EPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS  162 (313)
T ss_dssp             CSSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCccccCHhhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHH
Confidence            5457788888876                                       7789999999999999999999999998


Q ss_pred             cC
Q psy7376         179 RL  180 (180)
Q Consensus       179 RL  180 (180)
                      |+
T Consensus       163 r~  164 (313)
T d1ixka_         163 RL  164 (313)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

PyMOL of d1ixka_

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure