Psyllid ID: psy7380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MFNDDNNNQAYYKEITKLKIDSNPFAKGFRDSSRLTEFERQNVLFDRHFMGRILRDEYPPDTGKVVNTLYSC
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHEEcccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHcHHHHHHccHcccccccccccHHHHHHHHcHccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mfnddnnnQAYYKEITKlkidsnpfakgfrdssrltefERQNVLFDrhfmgrilrdeyppdtgkvvntlysc
Flexible Loop (DISEMBL)
MFNDDNNNQAYYKEItklkidsnpfakgfrdssrlteferqnvlfdrhfmgrilrdeyppdtgkvvntlysc
Low Complexity Region (SEG)
MFNDDNNNQAYYKEITKLKIDSNPFAKGFRDSSRLTEFERQNVLFDRHFMGRILRDEYPPDTGKVVNTLYSC
Disordered region (IsUnstruct)
**********YYKEITKLKIDSNPFAKGF****RLTEFERQNVLFDRHFMGRILRDEYP*****VV******
Disordered Region (DISOPRED)
********QAYYKEITKLKIDSNPFAKGFRDSSR**************************DTGKVVNTLYSC
Disordered Region (DISEMBL)
MFNDDNNNQAYYKEITKLKIDSNPFAKGFRDSSRLTEFERQNVLFDRHFMGRILRDEYPPDTGKVVNTLYSC
Disordered Region (DISPRO)
*F*DDNNNQAYYKEITKLKIDSNPFAKGFRDSSRLTEFERQNVLFDRHFMGRILRDEYPPDTGKVVNTLYSC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFNDDNNNQAYYKEITKLKIDSNPFAKGFRDSSRLTEFERQNVLFDRHFMGRILRDEYPPDTGKVVNTLYSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q9ES03	445	T-box transcription facto	yes	N/A	0.527	0.085	0.7	3e-08
Q9UMR3	447	T-box transcription facto	yes	N/A	0.527	0.085	0.7	3e-08
Q8UW76	440	T-box transcription facto	yes	N/A	0.527	0.086	0.7	3e-08
Q8AXW8	441	T-box transcription facto	N/A	N/A	0.527	0.086	0.7	3e-08
Q3SA46	440	T-box transcription facto	yes	N/A	0.527	0.086	0.7	3e-08
Q9I9K7	446	T-box transcription facto	yes	N/A	0.527	0.085	0.675	7e-08
Q94890	660	T-box protein H15 OS=Dros	yes	N/A	0.625	0.068	0.6	9e-08
Q9EPZ6	613	T-box transcription facto	no	N/A	0.305	0.035	0.772	0.0007
O95935	607	T-box transcription facto	no	N/A	0.305	0.036	0.772	0.0007

>sp|Q9ES03|TBX20_MOUSE T-box transcription factor TBX20 OS=Mus musculus GN=Tbx20 PE=2 SV=3

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 2/40 (5%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
           ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct: 271 ITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 310

Probable transcriptional regulator involved in developmental processes.
Mus musculus (taxid: 10090)

>sp|Q9UMR3|TBX20_HUMAN T-box transcription factor TBX20 OS=Homo sapiens GN=TBX20 PE=1 SV=4

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 2/40 (5%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
           ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct: 272 ITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 311

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

>sp|Q8UW76|TBX20_CHICK T-box transcription factor TBX20 OS=Gallus gallus GN=TBX20 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 2/40 (5%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
           ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct: 266 ITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 305

Probable transcriptional regulator involved in developmental processes.

Gallus gallus (taxid: 9031)

>sp|Q8AXW8|TBX20_XENLA T-box transcription factor TBX20 OS=Xenopus laevis GN=tbx20 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 2/40 (5%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
           ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct: 266 ITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 305

Probable transcriptional regulator involved in developmental processes.

Xenopus laevis (taxid: 8355)

>sp|Q3SA46|TBX20_XENTR T-box transcription factor TBX20 OS=Xenopus tropicalis GN=tbx20 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 2/40 (5%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
           ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct: 266 ITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 305

Probable transcriptional regulator involved in developmental processes.

Xenopus tropicalis (taxid: 8364)

>sp|Q9I9K7|TBX20_DANRE T-box transcription factor TBX20 OS=Danio rerio GN=tbx20 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 32/40 (80%), Gaps = 2/40 (5%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
           IT+LKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct: 271 ITRLKIDSNPFAKGFRDSSRLTDIERESVESLIHKHSYAR 310

May play a very early role in the differentiation of the cardiac precursors.

Danio rerio (taxid: 7955)

>sp|Q94890|H15_DROME T-box protein H15 OS=Drosophila melanogaster GN=H15 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 5/50 (10%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQNV---LFDRHFMGRILRDEYPPD 61
           ITKLKIDSNPFAKGFRDSSRL++F+R  +    FD+H     LR  + PD
Sbjct: 456 ITKLKIDSNPFAKGFRDSSRLSDFDRDPMDAFFFDQHMRTAPLR--FFPD 503

Drosophila melanogaster (taxid: 7227)

>sp|Q9EPZ6|TBX18_MOUSE T-box transcription factor TBX18 OS=Mus musculus GN=Tbx18 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query: 13  KEITKLKIDSNPFAKGFRDSSR 34
           ++IT+LKID NPFAKGFRDS R
Sbjct: 318 QQITRLKIDRNPFAKGFRDSGR 339

Probable transcriptional regulator involved in developmental processes.

Mus musculus (taxid: 10090)

>sp|O95935|TBX18_HUMAN T-box transcription factor TBX18 OS=Homo sapiens GN=TBX18 PE=2 SV=3

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query: 13  KEITKLKIDSNPFAKGFRDSSR 34
           ++IT+LKID NPFAKGFRDS R
Sbjct: 312 QQITRLKIDRNPFAKGFRDSGR 333

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
270008223	443	midline [Tribolium castaneum]	0.569	0.092	0.681	5e-08
91082917	465	PREDICTED: similar to T-box transcriptio	0.569	0.088	0.681	6e-08
91082919	594	PREDICTED: similar to GA19742-PA [Tribol	0.569	0.069	0.659	7e-08
242007800	354	T-box protein H15, putative [Pediculus h	0.666	0.135	0.607	2e-07
270008163	371	H15 [Tribolium castaneum]	0.569	0.110	0.659	2e-07
195388507	687	GJ19565 [Drosophila virilis] gi|19414937	0.625	0.065	0.62	3e-07
307198362	249	T-box transcription factor TBX20 [Harpeg	0.416	0.120	0.833	3e-07
332026780	225	T-box transcription factor TBX20 [Acromy	0.513	0.164	0.666	5e-07
170028439	346	T-box protein H15 [Culex quinquefasciatu	0.486	0.101	0.710	5e-07
195118074	675	GI17985 [Drosophila mojavensis] gi|19391	0.625	0.066	0.62	5e-07

>gi|270008223|gb|EFA04671.1| midline [Tribolium castaneum]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 37/44 (84%), Gaps = 3/44 (6%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFER---QNVLFDRHFMGRILR 55
           ITKLKIDSNPFAKGFRDSSRLTEFER   +++L ++H++   LR
Sbjct: 267 ITKLKIDSNPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPLR 310

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082917|ref|XP_972626.1| PREDICTED: similar to T-box transcription factor TBX20 [Tribolium castaneum]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 37/44 (84%), Gaps = 3/44 (6%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFER---QNVLFDRHFMGRILR 55
           ITKLKIDSNPFAKGFRDSSRLTEFER   +++L ++H++   LR
Sbjct: 289 ITKLKIDSNPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPLR 332

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082919|ref|XP_972670.1| PREDICTED: similar to GA19742-PA [Tribolium castaneum]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 36/44 (81%), Gaps = 3/44 (6%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQ---NVLFDRHFMGRILR 55
           ITKLKIDSNPFAKGFRDSSRLT+F+R+   ++  D+HF+   LR
Sbjct: 384 ITKLKIDSNPFAKGFRDSSRLTDFDREPMDSLFMDQHFLRSSLR 427

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007800|ref|XP_002424710.1| T-box protein H15, putative [Pediculus humanus corporis] gi|212508203|gb|EEB11972.1| T-box protein H15, putative [Pediculus humanus corporis]

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 39/51 (76%), Gaps = 3/51 (5%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFER---QNVLFDRHFMGRILRDEYPPDT 62
           ITKLKIDSNPFAKGFRDSSRLTEFER   +++L ++H++   +R     DT
Sbjct: 146 ITKLKIDSNPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPIRTFSELDT 196

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008163|gb|EFA04611.1| H15 [Tribolium castaneum]

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 36/44 (81%), Gaps = 3/44 (6%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFERQ---NVLFDRHFMGRILR 55
           ITKLKIDSNPFAKGFRDSSRLT+F+R+   ++  D+HF+   LR
Sbjct: 161 ITKLKIDSNPFAKGFRDSSRLTDFDREPMDSLFMDQHFLRSSLR 204

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388507|ref|XP_002052921.1| GJ19565 [Drosophila virilis] gi|194149378|gb|EDW65076.1| GJ19565 [Drosophila virilis]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 5/50 (10%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFER---QNVLFDRHFMGRILRDEYPPD 61
           ITKLKIDSNPFAKGFRDSSRLT+F+R    +  FD+H     LR  + PD
Sbjct: 467 ITKLKIDSNPFAKGFRDSSRLTDFDRDPMDSFFFDQHMRAAPLR--FFPD 514

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198362|gb|EFN79310.1| T-box transcription factor TBX20 [Harpegnathos saltator]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/30 (83%), Positives = 29/30 (96%)

Query: 14 EITKLKIDSNPFAKGFRDSSRLTEFERQNV 43
          +ITKLKIDSNPFAKGFRDSSRLT+FER+ +
Sbjct: 31 QITKLKIDSNPFAKGFRDSSRLTDFERETM 60

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026780|gb|EGI66889.1| T-box transcription factor TBX20 [Acromyrmex echinatior]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 34/39 (87%), Gaps = 2/39 (5%)

Query: 7  NNQAYYK--EITKLKIDSNPFAKGFRDSSRLTEFERQNV 43
          N + +++  +ITKLKIDSNPFAKGFRDSSRLT+FER+ +
Sbjct: 2  NRRPFFRLLQITKLKIDSNPFAKGFRDSSRLTDFERETM 40

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028439|ref|XP_001842103.1| T-box protein H15 [Culex quinquefasciatus] gi|167874258|gb|EDS37641.1| T-box protein H15 [Culex quinquefasciatus]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/38 (71%), Positives = 32/38 (84%), Gaps = 3/38 (7%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFER---QNVLFDRHF 49
           ITKLKIDSNPFAKGFRDSSRLT+F+R     +LF++H 
Sbjct: 129 ITKLKIDSNPFAKGFRDSSRLTDFDRDPMDALLFEQHL 166

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118074|ref|XP_002003565.1| GI17985 [Drosophila mojavensis] gi|193914140|gb|EDW13007.1| GI17985 [Drosophila mojavensis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 5/50 (10%)

Query: 15  ITKLKIDSNPFAKGFRDSSRLTEFER---QNVLFDRHFMGRILRDEYPPD 61
           ITKLKIDSNPFAKGFRDSSRLT+F+R    +  FD+H     LR  + PD
Sbjct: 459 ITKLKIDSNPFAKGFRDSSRLTDFDRDPMDSFFFDQHMRAAPLR--FFPD 506

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
UNIPROTKB|Q8UW76	440	TBX20 "T-box transcription fac	0.597	0.097	0.652	1.7e-08
UNIPROTKB|Q8AXW8	441	tbx20 "T-box transcription fac	0.597	0.097	0.652	1.7e-08
MGI|MGI:1888496	445	Tbx20 "T-box 20" [Mus musculus	0.597	0.096	0.652	1.7e-08
RGD|1309396	446	Tbx20 "T-box 20" [Rattus norve	0.597	0.096	0.652	1.7e-08
UNIPROTKB|Q9UMR3	447	TBX20 "T-box transcription fac	0.597	0.096	0.652	1.8e-08
UNIPROTKB|J9JHY2	448	TBX20 "Uncharacterized protein	0.597	0.095	0.652	1.8e-08
UNIPROTKB|E1BGZ6	449	TBX20 "Uncharacterized protein	0.597	0.095	0.652	1.8e-08
UNIPROTKB|F1SIK8	449	TBX20 "Uncharacterized protein	0.597	0.095	0.652	1.8e-08
FB|FBgn0016660	660	H15 "H15" [Drosophila melanoga	0.694	0.075	0.571	6.7e-08
FB|FBgn0261963	580	mid "midline" [Drosophila mela	0.430	0.053	0.812	2.5e-07

UNIPROTKB|Q8UW76 TBX20 "T-box transcription factor TBX20" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   260 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 305

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

UNIPROTKB|Q8AXW8 tbx20 "T-box transcription factor TBX20" [Xenopus laevis (taxid:8355)]

 Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   260 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 305

GO:0000578 "embryonic axis specification" evidence=IMP

GO:0001706 "endoderm formation" evidence=IMP

GO:0048370 "lateral mesoderm formation" evidence=IMP

MGI|MGI:1888496 Tbx20 "T-box 20" [Mus musculus (taxid:10090)]

 Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   265 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 310

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI;IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO;IDA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO;IDA

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO;IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0003175 "tricuspid valve development" evidence=IMP

GO:0003176 "aortic valve development" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=IMP

GO:0003203 "endocardial cushion morphogenesis" evidence=IMP

GO:0003207 "cardiac chamber formation" evidence=IMP

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IMP

GO:0003272 "endocardial cushion formation" evidence=IMP

GO:0003279 "cardiac septum development" evidence=IMP

GO:0003344 "pericardium morphogenesis" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006936 "muscle contraction" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008015 "blood circulation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0010717 "regulation of epithelial to mesenchymal transition" evidence=NAS

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IDA

GO:0021524 "visceral motor neuron differentiation" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IGI;IMP

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IMP

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

RGD|1309396 Tbx20 "T-box 20" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   266 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 311

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO

GO:0001569 "patterning of blood vessels" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0003175 "tricuspid valve development" evidence=ISO

GO:0003176 "aortic valve development" evidence=ISO

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=ISO

GO:0003203 "endocardial cushion morphogenesis" evidence=ISO

GO:0003207 "cardiac chamber formation" evidence=ISO

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISO

GO:0003272 "endocardial cushion formation" evidence=ISO

GO:0003279 "cardiac septum development" evidence=ISO

GO:0003344 "pericardium morphogenesis" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006936 "muscle contraction" evidence=ISO

GO:0008015 "blood circulation" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=ISO

GO:0021524 "visceral motor neuron differentiation" evidence=ISO

GO:0035050 "embryonic heart tube development" evidence=ISO

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISO

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

UNIPROTKB|Q9UMR3 TBX20 "T-box transcription factor TBX20" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   266 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 311

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISS

GO:0003203 "endocardial cushion morphogenesis" evidence=ISS

GO:0003207 "cardiac chamber formation" evidence=ISS

GO:0003344 "pericardium morphogenesis" evidence=ISS

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0021524 "visceral motor neuron differentiation" evidence=ISS

GO:0003279 "cardiac septum development" evidence=ISS

GO:0003272 "endocardial cushion formation" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0003193 "pulmonary valve formation" evidence=ISS

GO:0003175 "tricuspid valve development" evidence=ISS

GO:0001947 "heart looping" evidence=ISS

GO:0035922 "foramen ovale closure" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISS

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISS

GO:0048370 "lateral mesoderm formation" evidence=ISS

GO:0001706 "endoderm formation" evidence=ISS

GO:0060413 "atrial septum morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=IMP

GO:0060577 "pulmonary vein morphogenesis" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|J9JHY2 TBX20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   267 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 312

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E1BGZ6 TBX20 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   268 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 313

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1SIK8 TBX20 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV--LFDRHFMGR 52
             AY  + ITKLKIDSNPFAKGFRDSSRLT+ ER++V  L  +H   R
Sbjct:   268 AYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYAR 313

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

FB|FBgn0016660 H15 "H15" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 32/56 (57%), Positives = 39/56 (69%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFERQNV---LFDRHFMGRILRDEYPPD 61
             AY  + ITKLKIDSNPFAKGFRDSSRL++F+R  +    FD+H     LR  + PD
Sbjct:   450 AYQNQLITKLKIDSNPFAKGFRDSSRLSDFDRDPMDAFFFDQHMRTAPLR--FFPD 503

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;NAS

GO:0007507 "heart development" evidence=IMP

GO:0042684 "cardioblast cell fate commitment" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0003015 "heart process" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0042659 "regulation of cell fate specification" evidence=IGI

GO:0035223 "leg disc pattern formation" evidence=IGI

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0261963 mid "midline" [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query:    10 AYYKE-ITKLKIDSNPFAKGFRDSSRLTEFER 40
             AY  + ITKLKIDSNPFAKGFRDSSRLT+F+R
Sbjct:   359 AYQNQLITKLKIDSNPFAKGFRDSSRLTDFDR 390

GO:0007367 "segment polarity determination" evidence=IMP

GO:0007409 "axonogenesis" evidence=NAS;IMP

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007399 "nervous system development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0042684 "cardioblast cell fate commitment" evidence=IMP

GO:0051890 "regulation of cardioblast differentiation" evidence=IMP

GO:0014019 "neuroblast development" evidence=IMP

GO:0014018 "neuroblast fate specification" evidence=IMP

GO:0003015 "heart process" evidence=IDA

GO:0048665 "neuron fate specification" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007402 "ganglion mother cell fate determination" evidence=IMP

GO:0051960 "regulation of nervous system development" evidence=IMP

GO:0007417 "central nervous system development" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI;IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0042659 "regulation of cell fate specification" evidence=IGI

GO:0035223 "leg disc pattern formation" evidence=IGI

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001226 "RNA polymerase II transcription corepressor binding" evidence=IPI

GO:0001227 "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA;IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SA46	TBX20_XENTR	No assigned EC number	0.7	0.5277	0.0863	yes	N/A
Q94890	H15_DROME	No assigned EC number	0.6	0.625	0.0681	yes	N/A
Q9ES03	TBX20_MOUSE	No assigned EC number	0.7	0.5277	0.0853	yes	N/A
Q9I9K7	TBX20_DANRE	No assigned EC number	0.675	0.5277	0.0852	yes	N/A
Q8UW76	TBX20_CHICK	No assigned EC number	0.7	0.5277	0.0863	yes	N/A
Q9UMR3	TBX20_HUMAN	No assigned EC number	0.7	0.5277	0.0850	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	2e-09
pfam00907	182	pfam00907, T-box, T-box	2e-08
smart00425	190	smart00425, TBOX, Domain first found in the mice T	1e-06

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score = 50.3 bits (121), Expect = 2e-09
 Identities = 18/26 (69%), Positives = 22/26 (84%), Gaps = 1/26 (3%)

Query: 10  AYYKE-ITKLKIDSNPFAKGFRDSSR 34
           AY  + IT+LKID+NPFAKGFRD+ R
Sbjct: 162 AYQNQEITQLKIDNNPFAKGFRDNGR 187

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 19/24 (79%), Positives = 21/24 (87%), Gaps = 1/24 (4%)

Query: 10  AYYK-EITKLKIDSNPFAKGFRDS 32
           AY   EITKLKID+NPFAKGFRD+
Sbjct: 159 AYQNEEITKLKIDNNPFAKGFRDA 182

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 17/21 (80%), Positives = 19/21 (90%)

Query: 14  EITKLKIDSNPFAKGFRDSSR 34
           +ITKLKID+NPFAKGFRD  R
Sbjct: 168 KITKLKIDNNPFAKGFRDQGR 188

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG3586|consensus	437		99.64
cd00182	188	TBOX T-box DNA binding domain of the T-box family	99.19
smart00425	190	TBOX Domain first found in the mice T locus (Brach	99.05
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	98.73
KOG3585|consensus	328		98.6

>KOG3586|consensus

Probab=99.64  E-value=4.5e-17  Score=130.00  Aligned_cols=53  Identities=42%  Similarity=0.432  Sum_probs=45.9

Q ss_pred             hhhhccceeeecCCccccccccCCCch----hhhhhhhhhhccccccCCCCCCCCCC
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDSSRLT----EFERQNVLFDRHFMGRILRDEYPPDT   62 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~s~~~----~~~~eail~~q~~~rsp~r~~~~~~~   62 (72)
                      -|||+||+||||+|||||||||.+++.    +...++++..+++||+|+++...+..
T Consensus       248 YQNq~ITkLKI~sNPFAKGFRD~~~~~~~~~~~~~~~l~~~~~~~r~p~~~~~~~~~  304 (437)
T KOG3586|consen  248 YQNQRITKLKIESNPFAKGFRDCGRNDWPDNEPGGDALLSAFARSRAPLRFPTQPSL  304 (437)
T ss_pred             cccceeeeeeeccCccccccccCCccCccccCcchhhhhhhhhhccCccccccccch
Confidence            499999999999999999999998875    24456688899999999999887763

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=99.19  E-value=3.2e-12  Score=91.55  Aligned_cols=25  Identities=68%  Similarity=1.034  Sum_probs=23.5

Q ss_pred             hhhhccceeeecCCccccccccCCC
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDSSR   34 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~s~   34 (72)
                      -||++||+|||++|||||||||.++
T Consensus       163 YqN~~It~lKi~~NpfAkgfr~~~~  187 (188)
T cd00182         163 YQNQEITQLKIDNNPFAKGFRDNGR  187 (188)
T ss_pred             ecCHhHhhhhhcCCcccccccccCC
Confidence            4899999999999999999999876

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=99.05  E-value=4.2e-11  Score=85.55  Aligned_cols=26  Identities=65%  Similarity=0.948  Sum_probs=23.7

Q ss_pred             hhhhccceeeecCCccccccccCCCc
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDSSRL   35 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~s~~   35 (72)
                      -||++||+|||++||||||||+.++.
T Consensus       164 YqN~~it~lKi~~NpfAkgfr~~~~~  189 (190)
T smart00425      164 YQNQKITKLKIDNNPFAKGFRDQGRR  189 (190)
T ss_pred             ecccchhhccccCCCCcCccccccCC
Confidence            48999999999999999999998653

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=98.73  E-value=9e-10  Score=75.70  Aligned_cols=24  Identities=63%  Similarity=0.951  Sum_probs=20.0

Q ss_pred             hhhhhccceeeecCCccccccccC
Q psy7380           9 QAYYKEITKLKIDSNPFAKGFRDS   32 (72)
Q Consensus         9 ~~qnqqIT~LKID~NPFAKgFRd~   32 (72)
                      .-||++|++|||++|||||||||.
T Consensus       161 ~Yqn~~I~~lK~~~Npfak~fr~~  184 (184)
T PF00907_consen  161 AYQNEEIRQLKIDNNPFAKGFRDK  184 (184)
T ss_dssp             S-SSHHHHHHHHHH-GGGGGGHH-
T ss_pred             ccchhhhhhhhhccCCCccccCCC
Confidence            458999999999999999999983

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

>KOG3585|consensus

Probab=98.60  E-value=1e-08  Score=78.25  Aligned_cols=26  Identities=65%  Similarity=0.876  Sum_probs=23.3

Q ss_pred             hhhhccceeeecCCccccccccCCCc
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDSSRL   35 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~s~~   35 (72)
                      -||++||+|||++||||||||+....
T Consensus       187 YQn~~it~lKi~~Npfakgfr~~~~~  212 (328)
T KOG3585|consen  187 YQNQEITKLKIDNNPFAKGFRDNIEG  212 (328)
T ss_pred             eecceehhhcccCCcccccccccccc
Confidence            48999999999999999999998443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
1h6f_A	193	T-box transcription factor TBX3; transcription fac	6e-05
1xbr_A	184	Protein (T protein); complex (transcription factor	8e-05
4a04_A	203	T-box transcription factor TBX1; transcription, T-	2e-04
2x6u_A	203	T-box transcription factor TBX5; developmental pro	4e-04

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score = 37.8 bits (87), Expect = 6e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 1/26 (3%)

Query: 10  AY-YKEITKLKIDSNPFAKGFRDSSR 34
           AY   +IT+LKID+NPFAKGFRD+  
Sbjct: 165 AYQNDKITQLKIDNNPFAKGFRDTGN 190

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score = 37.4 bits (86), Expect = 8e-05
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 11  YYKEITKLKIDSNPFAKGFRDSSR 34
             +EIT LKI  NPFAK F D+  
Sbjct: 159 QNEEITALKIKHNPFAKAFLDAKE 182

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score = 36.4 bits (83), Expect = 2e-04
 Identities = 15/21 (71%), Positives = 16/21 (76%)

Query: 11  YYKEITKLKIDSNPFAKGFRD 31
               IT+LKI SNPFAKGFRD
Sbjct: 183 QNHRITQLKIASNPFAKGFRD 203

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score = 35.5 bits (81), Expect = 4e-04
 Identities = 14/22 (63%), Positives = 18/22 (81%)

Query: 13  KEITKLKIDSNPFAKGFRDSSR 34
            +IT+LKI++NPFAKGFR S  
Sbjct: 172 HKITQLKIENNPFAKGFRGSDD 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
1h6f_A	193	T-box transcription factor TBX3; transcription fac	99.3
4a04_A	203	T-box transcription factor TBX1; transcription, T-	99.22
2x6u_A	203	T-box transcription factor TBX5; developmental pro	99.2
1xbr_A	184	Protein (T protein); complex (transcription factor	99.14

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=99.30  E-value=1.2e-13  Score=97.51  Aligned_cols=27  Identities=56%  Similarity=0.812  Sum_probs=21.3

Q ss_pred             hhhhccceeeecCCccccccccCCCch
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDSSRLT   36 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~s~~~   36 (72)
                      -||++||+||||+|||||||||++.++
T Consensus       166 YQN~~It~LKi~~NpFAkgFr~~~~~~  192 (193)
T 1h6f_A          166 YQNDKITQLKIDNNPFAKGFRDTGNGR  192 (193)
T ss_dssp             CSCHHHHHHHHHHCGGGGGGCC-----
T ss_pred             cCchhhhhhhhcCCCCCcccccCCCCC
Confidence            489999999999999999999998754

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=99.22  E-value=5.8e-13  Score=94.64  Aligned_cols=22  Identities=68%  Similarity=0.966  Sum_probs=21.1

Q ss_pred             hhhhccceeeecCCcccccccc
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRD   31 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd   31 (72)
                      -||++||+|||++|||||||||
T Consensus       182 YQN~~It~LKi~~NPFAkgFrd  203 (203)
T 4a04_A          182 YQNHRITQLKIASNPFAKGFRD  203 (203)
T ss_dssp             CCCHHHHHHHHHHCGGGGGGCC
T ss_pred             cCCHHHHHHHhccCCCCcccCC
Confidence            4899999999999999999997

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=99.20  E-value=7.1e-13  Score=94.37  Aligned_cols=26  Identities=54%  Similarity=0.857  Sum_probs=13.3

Q ss_pred             hhhhccceeeecCCccccccccCCCc
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDSSRL   35 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~s~~   35 (72)
                      -||++||+||||+|||||||||++..
T Consensus       169 YQN~~It~LKi~~NPFAkgFR~~~~~  194 (203)
T 2x6u_A          169 YQNHKITQLKIENNPFAKGFRGSDDM  194 (203)
T ss_dssp             CCSHHHHHHHHHHC------------
T ss_pred             ecchhhhhhhhccCCCccccccCccc
Confidence            48999999999999999999998653

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=99.14  E-value=1.5e-12  Score=91.47  Aligned_cols=23  Identities=57%  Similarity=0.756  Sum_probs=21.8

Q ss_pred             hhhhccceeeecCCccccccccC
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDS   32 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~   32 (72)
                      -||++||+||||+|||||||||.
T Consensus       158 YQN~~It~LKi~~NpFAkgFr~~  180 (184)
T 1xbr_A          158 YQNEEITALKIKHNPFAKAFLDA  180 (184)
T ss_dssp             CCCHHHHHHHHHHCGGGHHHHHH
T ss_pred             cCChhHhhhhhccCCCCcccCCC
Confidence            58999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	1e-08
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	4e-07

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 46.4 bits (110), Expect = 1e-08
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 14  EITKLKIDSNPFAKGFRDSSR 34
           EIT LKI  NPFAK F D+  
Sbjct: 162 EITALKIKHNPFAKAFLDAKE 182

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 4e-07
 Identities = 15/18 (83%), Positives = 18/18 (100%)

Query: 14  EITKLKIDSNPFAKGFRD 31
           +IT+LKID+NPFAKGFRD
Sbjct: 167 KITQLKIDNNPFAKGFRD 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	99.09
d1xbra_	184	T domain from Brachyury transcription factor {Afri	99.05

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.7e-12  Score=88.88  Aligned_cols=22  Identities=68%  Similarity=1.032  Sum_probs=21.0

Q ss_pred             hhhhccceeeecCCcccccccc
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRD   31 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd   31 (72)
                      -||++||+|||++|||||||||
T Consensus       163 YQN~~It~lKi~~NpFAkgfR~  184 (184)
T d1h6fa_         163 YQNDKITQLKIDNNPFAKGFRD  184 (184)
T ss_dssp             CSCHHHHHHHHHHCGGGGGGCC
T ss_pred             ccchhHHHHHhccCcccccccC
Confidence            4899999999999999999997

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.05  E-value=3.4e-12  Score=88.74  Aligned_cols=23  Identities=57%  Similarity=0.756  Sum_probs=21.7

Q ss_pred             hhhhccceeeecCCccccccccC
Q psy7380          10 AYYKEITKLKIDSNPFAKGFRDS   32 (72)
Q Consensus        10 ~qnqqIT~LKID~NPFAKgFRd~   32 (72)
                      -||++||+|||++|||||||||.
T Consensus       158 YQN~~It~lKi~~NpFAkgfR~~  180 (184)
T d1xbra_         158 YQNEEITALKIKHNPFAKAFLDA  180 (184)
T ss_dssp             CCCHHHHHHHHHHCGGGHHHHHH
T ss_pred             cCcHHHhHHHhccCccccccccc
Confidence            48999999999999999999985