Psyllid ID: psy7408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MMLKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAILLDKNQPIKPVAEHPSKHMQDWHKAWFEEF
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MMLKQHLdmigrnepitrKAKFWQSYVRALKGSTailldknqpikpvaehpskhmQDWHKAWFEEF
Flexible Loop (DISEMBL)
mmlkqhldmigrnepitrkAKFWQSYVRALKGSTAILLDKNQPIKPVAEHPSKHMQDWHKAWFEEF
Low Complexity Region (SEG)
MMLKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAILLDKNQPIKPVAEHPSKHMQDWHKAWFEEF
Disordered region (IsUnstruct)
**************PITRKAKFWQSYVRALKGSTAILLDK**************************
Disordered Region (DISOPRED)
*****H**MIGRNEPITRKAKFWQSYVRA************************HMQDWHKAWFEEF
Disordered Region (DISEMBL)
MMLKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAILLDKNQPIKPVAEHPSKHMQDWHKAWFEEF
Disordered Region (DISPRO)
*MLKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAILLDKNQPIKPVAEHPSKHMQDWHKAWFEEF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAILLDKNQPIKPVAEHPSKHMQDWHKAWFEEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
253735721	263	myofilin isoform a [Acyrthosiphon pisum]	0.484	0.121	0.968	7e-10
240849489	117	myofilin isoform b [Acyrthosiphon pisum]	0.484	0.273	0.968	8e-10
307194611	275	hypothetical protein EAI_10442 [Harpegna	0.515	0.123	0.823	4e-08
307180017	275	hypothetical protein EAG_10677 [Camponot	0.515	0.123	0.823	4e-08
46019972	254	myofilin protein [Lethocerus indicus]	0.606	0.157	0.725	4e-08
383847873	247	PREDICTED: uncharacterized protein LOC10	0.515	0.137	0.794	7e-08
322801482	121	hypothetical protein SINV_10737 [Solenop	0.515	0.280	0.794	8e-08
332027910	185	hypothetical protein G5I_03418 [Acromyrm	0.515	0.183	0.794	8e-08
380012652	252	PREDICTED: uncharacterized protein LOC10	0.515	0.134	0.764	1e-07
328780997	252	PREDICTED: hypothetical protein LOC40980	0.515	0.134	0.764	1e-07

>gi|253735721|ref|NP_001156708.1| myofilin isoform a [Acyrthosiphon pisum] gi|253735723|ref|NP_001156709.1| myofilin isoform a [Acyrthosiphon pisum] gi|239793565|dbj|BAH72894.1| ACYPI002609 [Acyrthosiphon pisum]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/32 (96%), Positives = 31/32 (96%)

Query: 2  MLKQHLDMIGRNEPITRKAKFWQSYVRALKGS 33
          MLKQHLDMIGRNEPI RKAKFWQSYVRALKGS
Sbjct: 1  MLKQHLDMIGRNEPIQRKAKFWQSYVRALKGS 32

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849489|ref|NP_001155485.1| myofilin isoform b [Acyrthosiphon pisum] gi|253735725|ref|NP_001156710.1| myofilin isoform b [Acyrthosiphon pisum] gi|239793567|dbj|BAH72895.1| ACYPI002609 [Acyrthosiphon pisum]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/32 (96%), Positives = 31/32 (96%)

Query: 2  MLKQHLDMIGRNEPITRKAKFWQSYVRALKGS 33
          MLKQHLDMIGRNEPI RKAKFWQSYVRALKGS
Sbjct: 1  MLKQHLDMIGRNEPIQRKAKFWQSYVRALKGS 32

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194611|gb|EFN76900.1| hypothetical protein EAI_10442 [Harpegnathos saltator]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/34 (82%), Positives = 30/34 (88%)

Query: 3  LKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
           K +LDMIGRNEPITRKAKFWQSYVRALKG+  I
Sbjct: 5  FKSNLDMIGRNEPITRKAKFWQSYVRALKGTDDI 38

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180017|gb|EFN68093.1| hypothetical protein EAG_10677 [Camponotus floridanus]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/34 (82%), Positives = 30/34 (88%)

Query: 3  LKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
           K +LDMIGRNEPITRKAKFWQSYVRALKG+  I
Sbjct: 5  FKSNLDMIGRNEPITRKAKFWQSYVRALKGTDDI 38

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|46019972|emb|CAD59433.1| myofilin protein [Lethocerus indicus]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/40 (72%), Positives = 34/40 (85%)

Query: 1  MMLKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAILLDK 40
          M+L  HLDMIGRNEPI RKAKFWQSYVRALKG + + L++
Sbjct: 1  MLLHNHLDMIGRNEPIQRKAKFWQSYVRALKGPSHLPLNE 40

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847873|ref|XP_003699577.1| PREDICTED: uncharacterized protein LOC100882609 [Megachile rotundata]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 3  LKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
           + +LDMIGRNEPITRKAKFWQSYVRALKG+  I
Sbjct: 5  FRSNLDMIGRNEPITRKAKFWQSYVRALKGTDDI 38

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801482|gb|EFZ22143.1| hypothetical protein SINV_10737 [Solenopsis invicta]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 3  LKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
           + +LDMIGRNEPITRKAKFWQSYVRALKG+  I
Sbjct: 8  FRSNLDMIGRNEPITRKAKFWQSYVRALKGTDDI 41

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027910|gb|EGI67965.1| hypothetical protein G5I_03418 [Acromyrmex echinatior]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 3  LKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
           + +LDMIGRNEPITRKAKFWQSYVRALKG+  I
Sbjct: 5  FRSNLDMIGRNEPITRKAKFWQSYVRALKGTDDI 38

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012652|ref|XP_003690392.1| PREDICTED: uncharacterized protein LOC100863990 [Apis florea]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 3  LKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
           + +LDMIGRNEPITRKA+FWQSYVRALKG+  I
Sbjct: 5  FRSNLDMIGRNEPITRKARFWQSYVRALKGTDDI 38

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780997|ref|XP_393297.4| PREDICTED: hypothetical protein LOC409805 [Apis mellifera]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 3  LKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
           + +LDMIGRNEPITRKA+FWQSYVRALKG+  I
Sbjct: 5  FRSNLDMIGRNEPITRKARFWQSYVRALKGTDDI 38

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
FB|FBgn0038294	365	Mf "Myofilin" [Drosophila mela	0.530	0.095	0.685	7e-08

FB|FBgn0038294 Mf "Myofilin" [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query:     2 MLKQHLDMIGRNEPITRKAKFWQSYVRALKGSTAI 36
             M K HL+MIGRNE  ++KAKFWQSY+R+LKGS  I
Sbjct:     1 MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDI 35


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        66   0.00091  102 3  11 22  0.42    28
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  524 (56 KB)
  Total size of DFA:  112 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  8.45u 0.06s 8.51t   Elapsed:  00:00:14
  Total cpu time:  8.45u 0.06s 8.51t   Elapsed:  00:00:15
  Start:  Thu Aug 15 11:55:02 2013   End:  Thu Aug 15 11:55:17 2013

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=NAS

GO:0031672 "A band" evidence=IDA

GO:0035220 "wing disc development" evidence=IGI

GO:0022416 "chaeta development" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
1r4g_A	53	RNA polymerase alpha subunit; three helix-bundle,	82.2

>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1

Probab=82.20  E-value=0.63  Score=27.79  Aligned_cols=24  Identities=29%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             hhhhccCCchhhHHHHHHHHHHhhcc
Q psy7408           7 LDMIGRNEPITRKAKFWQSYVRALKG   32 (66)
Q Consensus         7 LdMIGrNE~~skKAkFWqsYvraLKG   32 (66)
                      |-++=.|+|+|+++|  |+||.+|+-
T Consensus         7 L~~vI~nS~LS~~~K--~sYi~~L~~   30 (53)
T 1r4g_A            7 LRLVIESSPLSRAEK--AAYVKSLSK   30 (53)
T ss_dssp             HHHHHTTSCCCSHHH--HHHHHHHHT
T ss_pred             HhhhhcCCcccHHHH--HHHHHHHHH
Confidence            556678999999999  999999974

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00