Psyllid ID: psy7460

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------
Protein Sequence
MLMEVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEccEEEccccHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEcccccccccccccEEEEEcccHHHHHHHHHHHHHHHEHHHccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEccEEEccccHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEcccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEccEEEccccHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEcccccccccccccccEEccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEcccccEEccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEccccccccccEEcccccccccccEccccccHHHHHHHHHHHHHHHHHccccccEcHHHHHHHcccccHHHcccHHHHHHHHHHHcEcEccccccccccccccccccccccccEcEEEEEEccccHHHHHHHHHHHccEEEEEcHHHcccccccEEcccccccccccccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccHHHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEcccccccccccEccccEcHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHcccccccEcHcccHHHHHHHHccccccHcccccEEccccccccccccccccEcEEEEEEccccHHHHHHHHHHHccEEEEEcHHHcccccccEEcccccccccccccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEcccccccccccEccccccHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHcccccHHHcccHHHHHHHHHHHcEcEccccccccccccccccccccccccEcEEEEEEccccHHHHHHHHHHHccEEEEEcHHHcccccccEEcccccccccccccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccHHHcccccEEEEEcccccccccccccccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
mlmevekdgpvpdawdwrkknvtgpagdqadcgscwaFSIAGMLEGQYAIKTGKLVEFSKSQLVECAkqcsgcdgcffepsiEYTHqaglesekdypyknangekfkcaydkskvklftgkdflhfngsETMKKILYkygplsvllnsdlihdyngtpirkndetcspydlGHAVLLVGygkqdnipywlvrnswgpigpdegffkiergnnacgieqiagYATIDVVIQRLVLEKKAIMLIQAVFLLCGVAsclclpsltdritDQVVARVDTLAIegsltfdneNILETFKAFIVKRGRQYANDEEIKERFEYFKqdghkkherygtsefsdrspeeilCKTGFKWSERTYERIVADREKVEKMLMEVEkdgpvpdawdwrkknvtgpagdqaacgscWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAkqcsgcggcdgleqpieythqaglesekdypyrngngekfkcaydkskvklftgkdflyfngSETMKKILYkygplsvglnshlihfyngtpirkndetcspydlGHAVLLVGygkqddipywlarnswgpigpdegffkiergnnacgieqiagYATIDVVIQRLVLEKKAIMLIQAVFLLCGVAsclclpsltdritDQVVARVDTLAIegsltfdneNILETFKAFIVKRGRQYANDEEIKERFEYFKqdghkkherygtsefsdrspeeilCKTGFKWSERTYERIVADREKVEKMLMEVEkdgpvpdawdwrkknvtgpagdqaacgscWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAkqcsgcdgcffepsiEYTHqaglesekdypyknangekfkcaydkskvklftgkdflhfngsETMKKILYkygplsvllnsdlihdyngtpirkndetcspydlGHAVLLVGygkqdnipywlvrnswgpigpdegffkiergnnacgieqiagyatidvvkndetcspydlGHAVLLVGygkqddipywlvrnswgpigpdegffkiergnnacgieqiagyatidv
Flexible Loop (DISEMBL)
mlmevekdgpvpdawdWRKKNVTgpagdqadcGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIegsltfdneniLETFKAFIVKRGRQYANDEEIKERFEyfkqdghkkherygtsefsdrspeeilcktgfkwsertyeRIVADREKVEKMLMEVekdgpvpdawdWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIegsltfdneniLETFKAFIVKRGRQYANDEEIKERFEyfkqdghkkherygtsefsdrspeeilcktgfkwsertyeRIVADREKVEKMLMEVekdgpvpdawdWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIeqiagyatidv
Low Complexity Region (SEG)
MLMEVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADRekvekmlmevekDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADRekvekmlmevekDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV
Disordered region (IsUnstruct)
*************AWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYF***********************ILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLE**KDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYF***********************ILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI**
Disordered Region (DISOPRED)
*******DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKW************************DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQ****EKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKW************************DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV
Disordered Region (DISEMBL)
********GPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHK**************PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHK**************PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV
Disordered Region (DISPRO)
MLMEVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKW********************E*EKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWS*******************E*EKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLMEVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTxxxxxxxxxxxxxxxxxxxxxGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTxxxxxxxxxxxxxxxxxxxxxGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1026	2.2.26 [Sep-21-2011]
Q80LP4	337	Viral cathepsin OS=Adoxop	N/A	N/A	0.307	0.934	0.332	4e-43
Q9VN93	614	Putative cysteine protein	yes	N/A	0.315	0.527	0.320	5e-43
Q8V5U0	367	Viral cathepsin OS=Heliot	N/A	N/A	0.278	0.779	0.304	7e-43
Q10716	371	Cysteine proteinase 1 OS=	N/A	N/A	0.277	0.768	0.326	4e-40
Q9UBX1	484	Cathepsin F OS=Homo sapie	yes	N/A	0.307	0.650	0.302	2e-39
O10364	324	Viral cathepsin OS=Orgyia	N/A	N/A	0.274	0.870	0.310	8e-39
Q8QLK1	337	Viral cathepsin OS=Mamest	N/A	N/A	0.305	0.928	0.326	4e-38
P43295	361	Probable cysteine protein	no	N/A	0.306	0.869	0.297	1e-37
P43296	368	Cysteine proteinase RD19a	no	N/A	0.276	0.771	0.327	1e-37
P05167	362	Thiol protease aleurain O	N/A	N/A	0.301	0.853	0.300	1e-37

>sp|Q80LP4|CATV_NPVAH Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score =  177 bits (449), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 165/337 (48%), Gaps = 22/337 (6%)

Query: 634 VVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHER- 692
            +  V +  IEG L FD  +    F+ FI+   +QY + +    RF+ FKQ+    +E+ 
Sbjct: 8   TILLVASSQIEGHLKFDIHDAQHYFETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKN 67

Query: 693 -------YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKD--GPVP 743
                  Y  ++FSD S  E+L K     S++    + +       + ++   D    +P
Sbjct: 68  KLNDSAIYNINKFSDLSKNELLTKYTGLTSKKPSNMVRSTSNFCNVIHLDAPPDVHDELP 127

Query: 744 DAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 803
             +DWR  N      DQ ACGSCWA +  G LE  YAIK   L+  S+ QL++C      
Sbjct: 128 QNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCDSANMA 187

Query: 804 CDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNGS 860
           CDG     + E    A GL  E DYPY+   G K  C  D  K  L     K ++ F   
Sbjct: 188 CDGGLMHTAFEQLMNAGGLMEEIDYPYQ---GTKGVCKIDNKKFALSVSSCKRYI-FQNE 243

Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
           E +KK L   GP+++ +++  I  Y+   I      C    L HAVLLVGYG +  + YW
Sbjct: 244 ENLKKELITMGPIAMAIDAASISTYSKGIIH----FCENLGLNHAVLLVGYGTEGGVSYW 299

Query: 921 LVRNSWGPIGPDEGFFKIERGNNACGI-EQIAGYATI 956
            ++NSWG    ++G+F+++R  NACG+  Q+A  ATI
Sbjct: 300 TLKNSWGSDWGEDGYFRVKRNINACGLNNQLAASATI 336

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.
Adoxophyes honmai (taxid: 85585)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 5EC: 0

>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2

 Score =  177 bits (448), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 180/356 (50%), Gaps = 32/356 (8%)

Query: 254 CLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERF 313
           C   P +  R T  V         + S  FD  + L  F  F V+ GR+Y +  E + R 
Sbjct: 272 CRNQPVVQARHTRSVEWAEKKTHKKHSHRFDKVDHL--FYKFQVRFGRRYVSTAERQMRL 329

Query: 314 EYFKQDGHKKHE---------RYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVE 364
             F+Q+     E         +YG +EF+D +  E   +TG  W +R   +       V 
Sbjct: 330 RIFRQNLKTIEELNANEMGSAKYGITEFADMTSSEYKERTGL-W-QRDEAKATGGSAAVV 387

Query: 365 KMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFS 424
                    G +P  +DWR+K+      +Q +CGSCWAFS+ G +EG YA+KTG+L EFS
Sbjct: 388 PAY-----HGELPKEFDWRQKDAVTQVKNQGSCGSCWAFSVTGNIEGLYAVKTGELKEFS 442

Query: 425 KSQLVECAKQCSGCGG--CDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVK 482
           + +L++C    S C G   D   + I+     GLE E +YPY+    +K +C ++++   
Sbjct: 443 EQELLDCDTTDSACNGGLMDNAYKAIKDI--GGLEYEAEYPYK---AKKNQCHFNRTLSH 497

Query: 483 LFTGKDFLYFNGSET-MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAV 541
           +          G+ET M++ L   GP+S+G+N++ + FY G         CS  +L H V
Sbjct: 498 VQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGV 557

Query: 542 LLVGYGKQD------DIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
           L+VGYG  D       +PYW+ +NSWGP   ++G++++ RG+N CG+ ++A  A +
Sbjct: 558 LVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVL 613

May have a role in autophagic cell death.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8V5U0|CATV_NPVHZ Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1

 Score =  176 bits (447), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 170/322 (52%), Gaps = 36/322 (11%)

Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHER--------------------YGTSE 697
           FK F+ +  + Y + +E + R+  FK + +K + +                    +G ++
Sbjct: 57  FKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNK 116

Query: 698 FSDRSPEEIL-CKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 756
           FSD++P+E+L   TGF  +   +  +  +R      +++   D  +PD +DWR  N   P
Sbjct: 117 FSDKTPDEVLHSNTGFFLNLSQHYTLCENR------IVKGAPDIRLPDYYDWRDTNKVTP 170

Query: 757 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSI-EY 815
             DQ  CGSCWAF   G +E QYAI+  KL++ S+ QL++C +   GC+G     +  E 
Sbjct: 171 IKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCDEVDLGCNGGLMHLAFQEL 230

Query: 816 THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH-FNGSETMKKILYKYGPLS 874
               G+E+E DYPY+   G +  C  D  K+ +     F +       +K+++Y  GP++
Sbjct: 231 LLMGGVETEADYPYQ---GSEQMCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVA 287

Query: 875 VLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEG 934
           + +++  I +Y    + +    C  YDL HAVLL+G+G ++N+PYW+++NSWG    + G
Sbjct: 288 IAVDAMDIINYRRGILNQ----CHIYDLNHAVLLIGWGIENNVPYWIIKNSWGEDWGENG 343

Query: 935 FFKIERGNNACGIEQIAGYATI 956
           F ++ R  NACG+    G +++
Sbjct: 344 FLRVRRNVNACGLLNEFGASSV 365

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 174/346 (50%), Gaps = 61/346 (17%)

Query: 653 NILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHK--KHE------RYGTSEFSDRSPE 704
           N    F +F+ + G+ Y + +E   R   FK +  +  +H+       +G ++FSD +P 
Sbjct: 43  NAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPA 102

Query: 705 EILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPV------PDAWDWRKKNVTGPAG 758
           E           RTY  +   R  + + L E   + PV      PD +DWR     GP  
Sbjct: 103 EF---------RRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVK 153

Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC---------SGCDGCFF 809
           +Q +CGSCW+FS +G LEG + + TGKL   S+ Q V+C  +C         SGC+G   
Sbjct: 154 NQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLM 213

Query: 810 EPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKIL 867
             +  Y  +A GLESEKDYPY  ++G   KC +DKSK+ + + ++F   +  E  +   L
Sbjct: 214 TTAFSYLQKAGGLESEKDYPYTGSDG---KCKFDKSKI-VASVQNFSVVSVDEAQISANL 269

Query: 868 YKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPY----DLGHAVLLVGYG-------KQDN 916
            K+GPL++ +N+  +  Y G           PY     L H VLLVGYG       +  +
Sbjct: 270 IKHGPLAIGINAAYMQTYIGG-------VSCPYICGRHLDHGVLLVGYGASGFAPIRLKD 322

Query: 917 IPYWLVRNSWGPIGPDEGFFKIERGNNA---CGIEQIAGYATIDVV 959
            PYW+++NSWG    + G++KI RG+N    CG++ +   +T+  V
Sbjct: 323 KPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMV--STVSAV 366

Involved in the degradation of the storage protein zein. May play a role in proteolysis during emergencies.

Zea mays (taxid: 4577)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9UBX1|CATF_HUMAN Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 157/337 (46%), Gaps = 22/337 (6%)

Query: 266 DQVVARVDTLAIEGSLTFDNE-NILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKH 324
           ++  + V +L  E  L+ D    +   FK F++   R Y + EE + R   F  +  +  
Sbjct: 160 NETFSSVISLLNEDPLSQDLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQ 219

Query: 325 E---------RYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGP 375
           +         +YG ++FSD + EE             Y   +  +E   KM         
Sbjct: 220 KIQALDRGTAQYGVTKFSDLTEEEF---------RTIYLNTLLRKEPGNKMKQAKSVGDL 270

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
            P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K  
Sbjct: 271 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 330

Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
             C G           +  GLE+E DY Y+   G    C +   K K++           
Sbjct: 331 KACMGGLPSNAYSAIKNLGGLETEDDYSYQ---GHMQSCNFSAEKAKVYINDSVELSQNE 387

Query: 496 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 555
           + +   L K GP+SV +N+  + FY     R     CSP+ + HAVLLVGYG + D+P+W
Sbjct: 388 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFW 447

Query: 556 LARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
             +NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 448 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 484

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 4

EC: 1

>sp|O10364|CATV_NPVOP Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 169/316 (53%), Gaps = 34/316 (10%)

Query: 648 TFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK--------QDGHKKHERYGTSEFS 699
           T+D       F+ F+ K  + Y+++ E   RF+ F+        ++ +    +Y  ++FS
Sbjct: 18  TYDLLKAPNYFEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFS 77

Query: 700 DRSPEEILCK-TGFKWSERTY---ERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTG 755
           D S EE + K TG     +T    E ++ DR             GP+   +DWR+ N   
Sbjct: 78  DLSKEEAISKYTGLSLPHQTQNFCEVVILDRPP---------DRGPLE--FDWRQFNKVT 126

Query: 756 PAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY 815
              +Q  CG+CWAF+  G LE Q+AIK  +L+  S+ Q ++C +  +GCDG     + E 
Sbjct: 127 SVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCDRVNAGCDGGLLHTAFES 186

Query: 816 THQ-AGLESEKDYPYKNANGEKFKCAYDKSK--VKLFTGKDFLHFNGSETMKKILYKYGP 872
             +  G++ E DYPY+ ANG+   C  + ++  V + + + ++     E +K +L   GP
Sbjct: 187 AMEMGGVQMESDYPYETANGQ---CRINPNRFVVGVRSCRRYIVM-FEEKLKDLLRAVGP 242

Query: 873 LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPD 932
           + V +++  I +Y    +R+    C+ + L HAVLLVGY  ++NIPYW+++N+WG    +
Sbjct: 243 IPVAIDASDIVNYRRGIMRQ----CANHGLNHAVLLVGYAVENNIPYWILKNTWGTDWGE 298

Query: 933 EGFFKIERGNNACGIE 948
           +G+F++++  NACGI 
Sbjct: 299 DGYFRVQQNINACGIR 314

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Orgyia pseudotsugata (taxid: 33414)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q8QLK1|CATV_NPVMC Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score =  160 bits (405), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 174/352 (49%), Gaps = 39/352 (11%)

Query: 621 LCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFE 680
           L L S      DQVVA    + I+ +L   N   L  F+ FI +  +QY++++E K R+ 
Sbjct: 8   LLLVSAVLTSHDQVVA----VTIKPNLYNINSAPL-YFEKFISQYNKQYSSEDEKKYRYN 62

Query: 681 YFKQDG---HKKHER-----YGTSEFSDRSPEEILCK-TGFKWSERTYERIVADREKVEK 731
            F+ +    + K+ R     Y  + F+D +  E++ + TG            A  +    
Sbjct: 63  IFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGL-----------ASGDIGAN 111

Query: 732 MLMEVEKDGP----VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLV 787
               +  DGP     P  +DWR  N      DQ  CG+CWAF+  G LE QYAIK  +L+
Sbjct: 112 FCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLI 171

Query: 788 EFSKSQLVECAKQCSGCDGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKV 846
           + ++ QLV+C     GCDG     + E   H  G+E E DYPYK     +  CA    K 
Sbjct: 172 DLAEQQLVDCDFVDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYK---AVRLPCAVKPHKF 228

Query: 847 KLFTGKDFLHFNGS-ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHA 905
            +     + +   S E ++ +L   GP+++ +++  + DY G  I      C    L HA
Sbjct: 229 AVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGVI----SFCENNGLNHA 284

Query: 906 VLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACG-IEQIAGYATI 956
           VLLVGYG ++N+PYW ++NSWG    + G+ +I RG N+CG I ++A  A I
Sbjct: 285 VLLVGYGIENNVPYWTIKNSWGSDYGENGYVRIRRGVNSCGMINELASSAQI 336

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Mamestra configurata (taxid: 174822)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|P43295|A494_ARATH Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 175/383 (45%), Gaps = 69/383 (18%)

Query: 603 KAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFI 662
           + +  +  +F+   V+ C     L  ++ D+   +V  L+ E           + F  F 
Sbjct: 6   RVLFSVSLIFVFVSVSVCGDEDVLIRQVVDETEPKV--LSSE-----------DHFTLFK 52

Query: 663 VKRGRQYANDEEIKERFEYFKQD-----GHKKHE---RYGTSEFSDRSPEE-----ILCK 709
            K G+ Y + EE   RF  FK +      H+K +   R+G ++FSD +  E     +  K
Sbjct: 53  KKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVK 112

Query: 710 TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAF 769
            GFK  +   +  +   + +             P+ +DWR +    P  +Q +CGSCW+F
Sbjct: 113 GGFKLPKDANQAPILPTQNL-------------PEEFDWRDRGAVTPVKNQGSCGSCWSF 159

Query: 770 SIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC---------SGCDGCFFEPSIEYTHQA- 819
           S  G LEG + + TGKLV  S+ QLV+C  +C         SGC+G     + EYT +  
Sbjct: 160 STTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLKTG 219

Query: 820 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 879
           GL  EKDYPY   +G    C  D+SK+        +     + +   L K GPL+V +N+
Sbjct: 220 GLMREKDYPYTGTDGG--SCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINA 277

Query: 880 DLIHDYNGTPIRKNDETCSPY----DLGHAVLLVGYG-------KQDNIPYWLVRNSWGP 928
             +  Y G           PY     L H VLLVGYG       +    PYW+++NSWG 
Sbjct: 278 AYMQTYIGG-------VSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGE 330

Query: 929 IGPDEGFFKIERGNNACGIEQIA 951
              + GF+KI +G N CG++ + 
Sbjct: 331 SWGENGFYKICKGRNICGVDSLV 353

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P43296|RD19A_ARATH Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 157/330 (47%), Gaps = 46/330 (13%)

Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQDGHK--KHER------YGTSEFSDRSPEEILCK 709
           F  F  K G+ YA++EE   RF  FK +  +  +H++      +G ++FSD +  E   K
Sbjct: 51  FSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKK 110

Query: 710 TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAF 769
                  R+  ++  D  K   +  E      +P+ +DWR      P  +Q +CGSCW+F
Sbjct: 111 ---HLGVRSGFKLPKDANKAPILPTE-----NLPEDFDWRDHGAVTPVKNQGSCGSCWSF 162

Query: 770 SIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC---------SGCDGCFFEPSIEYTHQA- 819
           S  G LEG   + TGKLV  S+ QLV+C  +C         SGC+G     + EYT +  
Sbjct: 163 SATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTG 222

Query: 820 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 879
           GL  E+DYPY   +G+   C  DKSK+        +     E +   L K GPL+V +N+
Sbjct: 223 GLMKEEDYPYTGKDGK--TCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINA 280

Query: 880 DLIHDYNGTPIRKNDETCSPY----DLGHAVLLVGYG-------KQDNIPYWLVRNSWGP 928
             +  Y G           PY     L H VLLVGYG       +    PYW+++NSWG 
Sbjct: 281 GYMQTYIGG-------VSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGE 333

Query: 929 IGPDEGFFKIERGNNACGIEQIAGYATIDV 958
              + GF+KI +G N CG++ +       V
Sbjct: 334 TWGENGFYKICKGRNICGVDSMVSTVAATV 363

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P05167|ALEU_HORVU Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 161/343 (46%), Gaps = 34/343 (9%)

Query: 630 ITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKK 689
           +TD+  + +++ A+ G+L      +   F  F V+ G+ Y +  E++ RF  F +   + 
Sbjct: 36  VTDRAASTLES-AVLGALGRTRHAL--RFARFAVRYGKSYESAAEVRRRFRIFSESLEEV 92

Query: 690 HE--------RYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLME--VEKD 739
                     R G + FSD S           W E    R+ A +     +     +   
Sbjct: 93  RSTNRKGLPYRLGINRFSDMS-----------WEEFQATRLGAAQTCSATLAGNHLMRDA 141

Query: 740 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK 799
             +P+  DWR+  +  P  +QA CGSCW FS  G LE  Y   TGK +  S+ QLV+CA 
Sbjct: 142 AALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDCAG 201

Query: 800 QCS--GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAY--DKSKVKLFTGKDF 854
             +  GC+G     + EY  +  G+++E+ YPYK  NG    C Y  + + V++    + 
Sbjct: 202 GFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPYKGVNG---VCHYKAENAAVQVLDSVN- 257

Query: 855 LHFNGSETMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGK 913
           +  N  + +K  +    P+SV     D    Y       +    +P D+ HAVL VGYG 
Sbjct: 258 ITLNAEDELKNAVGLVRPVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGV 317

Query: 914 QDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
           ++ +PYWL++NSWG    D G+FK+E G N C I   A Y  +
Sbjct: 318 ENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAIATCASYPVV 360

Hordeum vulgare (taxid: 4513)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1026
358339354	603	cathepsin F [Clonorchis sinensis]	0.526	0.895	0.312	3e-78
391333248	642	PREDICTED: uncharacterized protein LOC10	0.601	0.961	0.272	9e-62
357619726	1118	cathepsin [Danaus plexippus]	0.375	0.344	0.353	4e-54
358339355	1157	cathepsin F [Clonorchis sinensis]	0.473	0.420	0.289	6e-50
67773380	322	cysteine protease 9 [Paragonimus westerm	0.276	0.881	0.380	2e-46
156546466	1036	PREDICTED: hypothetical protein LOC10012	0.284	0.281	0.362	3e-46
244790097	586	cathepsin F isoform 2 precursor [Acyrtho	0.295	0.517	0.353	6e-46
67773374	325	cysteine protease 6 [Paragonimus westerm	0.273	0.864	0.357	2e-45
67773370	321	cysteine protease 3 [Paragonimus westerm	0.277	0.887	0.371	3e-45
242014216	434	Cathepsin F precursor, putative [Pedicul	0.295	0.698	0.340	5e-45

>gi|358339354|dbj|GAA47434.1| cathepsin F [Clonorchis sinensis]

 Score =  300 bits (767), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 188/601 (31%), Positives = 293/601 (48%), Gaps = 61/601 (10%)

Query: 13  DAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 72
           D +DWR+    GP  +Q  CGSCWAFS  G +EGQ+ +K+G+L+  S  Q+++C     G
Sbjct: 41  DNFDWRQHGAVGPVWNQGPCGSCWAFSAVGNIEGQWFLKSGELLHLSVQQVLDCDHVDHG 100

Query: 73  CDGCFFEPSI--EYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
           C+G +  P +  +     GL+ + DY YK A G   KC  D+SK + +     +     +
Sbjct: 101 CNGGY-PPQVYRQVNQMGGLQLDADYSYKAAVG---KCHTDRSKFRAYVNSSVILSQNEQ 156

Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
                L   GPL+  LN+  +  Y    +      C+P  L HAVL VGYG +  +PYW+
Sbjct: 157 FQANKLKTIGPLASTLNARTLQFYRKGIMHPTPSACNPGQLNHAVLTVGYGTEQGMPYWI 216

Query: 191 VRNSWGPIGPDEGFFKIERG--NNACGIEQIAGYATIDVVIQRL----VLEKKAIMLIQA 244
           V+NSW       GF +  R    +      I G++ + +   +L    +LE K++ L ++
Sbjct: 217 VKNSW-----SRGFGEQVRAIWQHLRSRASIMGWSNLALKALQLQGDHLLENKSMKLFRS 271

Query: 245 VFLLCGVASC----LCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRG 300
            +L+  ++ C    L L  L  R T                T + EN  + ++ F  K  
Sbjct: 272 RYLMMRISICYLFTLELWCLCARTT----------------TPEPENARQLYEEFKQKYK 315

Query: 301 RQYANDEEIKERFEYFKQDGHKKHE---------RYGTSEFSDRSPEEILCK-TGFKWSE 350
           + Y ND++ + RF  FK++  + H+          YG ++F D + +E   +  GFK+ +
Sbjct: 316 KTYVNDDD-EYRFSVFKENLLRAHQLQTMEQGTAEYGVTQFFDLTSQEFQIQYLGFKYED 374

Query: 351 RTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLE 410
                 + D E++      V  +    D++DWR     GP  DQ  CGSCWAFS  G +E
Sbjct: 375 ------MQDTEEMSPSTRVVMDE----DSFDWRDHGAVGPVLDQGKCGSCWAFSTIGNIE 424

Query: 411 GQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGE 470
           GQ+ +KTG+L+  S+ QL++C     GC G    +         GLE   DYPY+     
Sbjct: 425 GQWFLKTGELLSLSEQQLIDCDNVDEGCNGGYPPKTYGAVIKMGGLELNSDYPYK---AL 481

Query: 471 KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDE 530
             KC  D+ K+K++     ++        + L   GPLS  LN++ + FY    +     
Sbjct: 482 AEKCHMDRQKLKVYINDSVVFPRNEHLQAEALKLMGPLSSALNANPLKFYKTGIMHLPVA 541

Query: 531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 590
           +C P  L HAVL VGYG ++ +PYW  +NSWG    ++G+F+I RG   CGI ++   A 
Sbjct: 542 SCFPRALNHAVLTVGYGTENGLPYWTVKNSWGTAFGEDGYFRIYRGGGTCGINRLVSTAA 601

Query: 591 I 591
           I
Sbjct: 602 I 602

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|391333248|ref|XP_003741031.1| PREDICTED: uncharacterized protein LOC100898636 [Metaseiulus occidentalis]

 Score =  245 bits (626), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 194/712 (27%), Positives = 315/712 (44%), Gaps = 95/712 (13%)

Query: 268 VVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFK---------- 317
           ++ R+ TL I    T+ +    E +K      G+ Y  +EE   R  + K          
Sbjct: 1   MILRLATLVIVLKFTYAD---WELYKRI---HGKSYDVEEESMRRRIFEKNVAMINAHNL 54

Query: 318 -QDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPV 376
             D  +   R G S  +D +P E+       ++       + ++   +  L  +++   +
Sbjct: 55  LHDLKQVSYRMGLSRLTDATPAEVQALKCLNFT-------LPNKTSRKSTLGTLQRQ-DL 106

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P+A DW ++    P  DQ  CG+CW F+  G +EGQ+   TG LV  S+  +++C K  +
Sbjct: 107 PEAVDWTQQGYVTPVKDQGKCGACWTFAATGAIEGQHFKATGNLVSLSEQNILDCVKTAT 166

Query: 437 --GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVK-LFTGKDFLYFN 493
             GC G   +E      +  G+++E+ YPY    G    C + +  V    +G   +   
Sbjct: 167 SNGCSGGLFVEAFDYLKNSGGIDAEESYPYEASGG---TCRFRQDSVAATVSGYQAISAG 223

Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
               +++ +   GP+SVG++S    F + T     +  C+ + L HAVL+VGYG ++   
Sbjct: 224 NEAELQEAVATIGPISVGIDSGHPGFQHYTGGIYYEPECTEH-LSHAVLVVGYGTENGED 282

Query: 554 YWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVF 612
           YWL +NSWG     +G+ K+ R  NN CGI   A Y    + +  LV+  K       ++
Sbjct: 283 YWLVKNSWGASYGLQGYIKMARNRNNNCGIATGAAYPITMLCVAALVVLLKFSHADWDLY 342

Query: 613 LLC-----GVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGR 667
                   GVA      S+  RI ++ VA ++             N+L   K        
Sbjct: 343 KRVQNKNYGVAE----DSMRRRIFEKNVAMIN-----------GHNLLHDLK-------- 379

Query: 668 QYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADRE 727
                     R  Y          R G S F+D +PEE+        +      +     
Sbjct: 380 ----------RVSY----------RMGLSRFTDSTPEEMRAMRCLNIN------VSMTTG 413

Query: 728 KVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLV 787
              + + +  +   + +A DWR++    P  +Q  CGSCWAFS  G +EGQ+   TG+L 
Sbjct: 414 GPHEEVFDAIESSDLSEAIDWRQQGYVTPVKNQGNCGSCWAFSATGAVEGQHFKATGRLE 473

Query: 788 EFSKSQLVECAKQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKV 846
             S+  LV+C K+  GCDG FFE + +Y     G+ +E  YPY+  +G    C + +  +
Sbjct: 474 SLSEQNLVDCVKESKGCDGGFFEQAFQYIKDNGGINTEDSYPYEAFDG---SCRFREDSI 530

Query: 847 -KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHA 905
               +G   +       ++K +   GP+SV ++       N       + +CS  +L HA
Sbjct: 531 GATVSGYQTIPKGSEADLQKAVSTIGPISVAIDVSNPSFQNYREGVYYEPSCSSSNLDHA 590

Query: 906 VLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
           VL+VGYG      YWLV+NSWG    ++G+ ++ R  GNN CGI   A Y T
Sbjct: 591 VLVVGYGSDGGEDYWLVKNSWGTSFGEQGYVRMARNKGNN-CGIASAAAYPT 641

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619726|gb|EHJ72185.1| cathepsin [Danaus plexippus]

 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 227/452 (50%), Gaps = 67/452 (14%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            PD +DWRKK V     +Q  CGSCWAFS A  +E  +AIKTGKL++ S+ QL++C K  
Sbjct: 54  APDQFDWRKKGVVSSIKNQKHCGSCWAFSAAANVESIHAIKTGKLIDVSEQQLLDCDKYD 113

Query: 71  SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--G 128
           SGC G     ++ Y    G  S K YPY    G   KC YD SKV++   K++ H     
Sbjct: 114 SGCSGGLPWDALRYFVANGAMSLKSYPYVAKEG---KCRYDSSKVEIRL-KEYKHKEKLS 169

Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
            + +K+ LY  GPLS+ + S  +  YNG  +   +E    Y + HAVLLVGYGK++ + Y
Sbjct: 170 EDQIKEHLYNIGPLSIAITSSPLASYNGGILI--EECHRSYLINHAVLLVGYGKENGVKY 227

Query: 189 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQRLVLEKKAIMLIQAVFLL 248
           W+V+NSWG    + G+F+++ G N              + ++  V E++ +         
Sbjct: 228 WIVKNSWGQNWGENGYFRMKMGVNCL------------LRVRSKVTEQQPVDYDIWDEGC 275

Query: 249 CGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILETFKAFIVKRGRQYANDEE 308
            G    L +  L  R       R+ +L    +L          F+ FI    ++Y ++ E
Sbjct: 276 SGGMQWLAIRELGQR-------RLYSLEEAPTL----------FEQFIKDYNKEY-DESE 317

Query: 309 IKERFEYFK---QDGHKKHER-----YGTSEFSDRSPEE-ILCKTGFKWSERTYERIVAD 359
            +ERF+ F    +D +  +ER     YG ++FSD S EE I   TG K            
Sbjct: 318 KEERFKIFVNNLKDINAMNERSSNAVYGINKFSDLSKEEFIKYYTGLK------------ 365

Query: 360 REKVEKMLMEVEKDGP------VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQY 413
           R++          D P       PD +DWRKK V     +Q  CGSCWAFS A  +E  +
Sbjct: 366 RDRCTTTEHHKSTDLPKSFNITAPDQFDWRKKGVVSSVKNQRHCGSCWAFSAAANVESIH 425

Query: 414 AIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE 445
           AIKTGKL++ S+ QL++C K  SGC G  GLE
Sbjct: 426 AIKTGKLIDVSEQQLLDCDKYDSGCSG--GLE 455

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358339355|dbj|GAA47435.1| cathepsin F [Clonorchis sinensis]

 Score =  206 bits (524), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 171/591 (28%), Positives = 252/591 (42%), Gaps = 105/591 (17%)

Query: 300  GRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVAD 359
            G  +  ++ IK+    F Q   +    YG ++FSD + EE          + T+  +  D
Sbjct: 646  GMLWGEEDNIKQ--AEFYQTLERGTALYGVTQFSDLTGEEF---------QETFLGLRLD 694

Query: 360  REKVEKMLMEVEKDGPV--PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT 417
             E+  K    V+K   V  P+ +DWR     GP  DQ  CGSCWAFS+ G +EGQ+  KT
Sbjct: 695  -EQYSKSQSYVKKKHSVSIPENYDWRPYGAVGPVLDQGHCGSCWAFSVIGNIEGQWFRKT 753

Query: 418  GKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYD 477
            G+LV  SK QLV+C +   GCGG              GLE E DY Y   +G    C  +
Sbjct: 754  GQLVSLSKQQLVDCDRSSRGCGGGYPPATYDSIRRIGGLEIELDYRYTGRDG---VCHQN 810

Query: 478  KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDL 537
              K   +            T+ + L  +GP+S+ LN+ L+ FY    +      C   D+
Sbjct: 811  PRKFVAYVNSSVALTKDENTIAEWLSYHGPISMALNARLLQFYVSGIMHPPAAYCPVKDI 870

Query: 538  GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVIQR 597
             HAVL VG+G + ++P+W+ +NSWG +  +EG+F+I RG++                   
Sbjct: 871  SHAVLSVGFGTKGNVPFWIVKNSWGTLWGEEGYFRIYRGDD------------------- 911

Query: 598  LVLEKKAIMLIQAVFLLCGVASCLCLPSLTDRITDQVVARVDTLAIEGSLTFDNENILET 657
                      + A+ +     +   +P    R      +RV +LA E S       + E 
Sbjct: 912  ----------MGALPISQPTNNSRLMPYHPLR---DATSRVTSLA-EYSRELRERQLYEE 957

Query: 658  FKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHERYGTSEFSDRSPEEILCKTGFKWSER 717
            FK   +  G+ Y N     E   YF   G +           DR P             R
Sbjct: 958  FK---LNYGKVYEN-----EGMFYFLYLGAR----------FDREP------------SR 987

Query: 718  TYERIVADREKVEKML--MEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGML 775
                +V D  ++ +     E+   GP+ D  D               CGSCWAFS  G +
Sbjct: 988  AGSMVVDDLGEIPERFDWRELGAVGPIQDQGD---------------CGSCWAFSTIGNI 1032

Query: 776  EGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY---THQAGLESEKDYPYKNA 832
            EGQ+  KTG+L+  S+ QL++C     GC G +  P   Y       GLE   DYPY  A
Sbjct: 1033 EGQWFKKTGQLLTLSEQQLIDCDSVDDGCGGGY--PPDTYGDIVKMGGLELNADYPYIAA 1090

Query: 833  NGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIH 883
            +G    C  ++SK + +  K  +     +     L K GPLS  +N+D + 
Sbjct: 1091 DG---VCKMERSKFRAYVNKSLVLPTKEDQQAVWLSKNGPLSAGINADYLQ 1138

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|67773380|gb|AAY81947.1| cysteine protease 9 [Paragonimus westermani]

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 171/313 (54%), Gaps = 29/313 (9%)

Query: 656 ETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE---------RYGTSEFSDRSPEEI 706
           E ++ F    G+ YAN+++ K RF  FK +  +  +         RYG ++FSD +PEE 
Sbjct: 25  ELYEQFKRDYGKVYANEDDQK-RFAIFKDNLVRAQKLQLKDQGTARYGVTQFSDLTPEEF 83

Query: 707 LCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSC 766
             K         Y R   + ++VE++     K    P+  DWR+K       +Q +CGSC
Sbjct: 84  AAK---------YLRAAVNNDQVERVRPTGLK--AAPERMDWREKGAVTAVENQGSCGSC 132

Query: 767 WAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPS-IEYTHQAGLESEK 825
           WAFS AG +EGQ+ IKTG+LV  SK QLV+C +   GC+G +   S +E  H  GLESE 
Sbjct: 133 WAFSAAGNVEGQWFIKTGQLVSLSKQQLVDCDRVAEGCNGGWPVSSYLEIKHMGGLESES 192

Query: 826 DYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS--ETMKKILYKYGPLSVLLNSDLIH 883
           DYPY    G +  CA +K K  L    D L   G+  E     L ++GPLS LLN+  + 
Sbjct: 193 DYPYV---GAEQTCALNKEK--LLAKIDDLIVLGAYEEEHAAYLAEHGPLSTLLNAVALQ 247

Query: 884 DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNN 943
            Y    +    E C   +L HAVL VGY K+ ++PYW+++NSWG    ++G+F++ RG+ 
Sbjct: 248 HYQSGVLNPTYEECPDTELNHAVLTVGYDKEGDMPYWIIKNSWGTDWGEKGYFRLFRGDY 307

Query: 944 ACGIEQIAGYATI 956
            CGI ++A  A I
Sbjct: 308 TCGINRMATSAII 320

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|156546466|ref|XP_001607324.1| PREDICTED: hypothetical protein LOC100123649 [Nasonia vitripennis]

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 169/323 (52%), Gaps = 31/323 (9%)

Query: 286  ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE---------RYGTSEFSDRS 336
            E IL  F  F+ K  + Y N EE + RF+ FK + +   E         RYG ++F+D  
Sbjct: 727  EEIL--FHEFMGKYKKMYHNKEEKEMRFQIFKDNLNLIEELQRNEMGTGRYGVTQFTD-- 782

Query: 337  PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAA 396
                L K  FK      +  +     +  M M    D  +P  +DWR  NV  P  DQ +
Sbjct: 783  ----LTKAEFKARHLGLKPTLKSENDI-PMPMATIPDIELPSDYDWRHHNVVTPVKDQGS 837

Query: 397  CGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG--CDGLEQPIEYTHQA 454
            CGSCWAFS+ G +EGQYAIK G+L+  S+ +LV+C K  SGC G   D   + IE     
Sbjct: 838  CGSCWAFSVTGNIEGQYAIKHGELLSLSEQELVDCDKLDSGCNGGLPDTAYRAIE--ELG 895

Query: 455  GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNS 514
            GLE E DYPY   + E  KC ++K+KVK+         +    M + L K GP+S+G+N+
Sbjct: 896  GLELESDYPY---DAEDEKCHFNKNKVKVNIVSGLNITSNETQMAQWLVKNGPMSIGINA 952

Query: 515  HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGK------QDDIPYWLARNSWGPIGPDE 568
            + + FY G         CSP  L H VL+VGYG       +  +PYW+ +NSWGP   ++
Sbjct: 953  NAMQFYMGGVSHPFKFLCSPDSLDHGVLIVGYGVKFYPIFKKTMPYWIIKNSWGPRWGEQ 1012

Query: 569  GFFKIERGNNACGIEQIAGYATI 591
            G++++ RG+  CG+ ++   A +
Sbjct: 1013 GYYRVYRGDGTCGVNKMVTSAVV 1035

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|244790097|ref|NP_001156454.1| cathepsin F isoform 2 precursor [Acyrthosiphon pisum]

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 175/337 (51%), Gaps = 34/337 (10%)

Query: 279 GSLTFDNENI-----LET-FKAFIVKRGRQYANDEEIKERFEYFKQDGHK-----KHER- 326
           G LT    NI     L+T F+ FI+   + Y + EE   RF  F  +  K      HE+ 
Sbjct: 261 GKLTTKKNNIDDRLQLKTDFENFIMTHNKIYTSLEEKSRRFRIFAANMKKVKLLQNHEQG 320

Query: 327 ---YGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEV-EKDGPVPDAWDW 382
              YG ++F+D      L K  FK   + Y  + +     + + M V  +   +P+ +DW
Sbjct: 321 SAIYGATQFAD------LTKNEFK---KKYLGLDSSMTSKKTLPMAVIPQSASIPNEFDW 371

Query: 383 RKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCD 442
           R  NV  P  +Q ACGSCWAFS    +EGQYA+K+ +L+  S+ +L++C    +GCGG  
Sbjct: 372 RNHNVVTPVKNQGACGSCWAFSAIANIEGQYALKSKELLSLSEQELIDCDNLDNGCGG-G 430

Query: 443 GLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKI 501
            + Q  E      GLE+E DYPY  G+ ++  C   KS VK+   K        E + K 
Sbjct: 431 LMTQAFEAVENLGGLETESDYPYE-GHADRKGCQLKKSDVKVSISKAVNVSTDEEDIAKF 489

Query: 502 LYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG------KQDDIPYW 555
           L K+GPLSVG+N++ + FY G         CSP  L H V +VGYG         ++PYW
Sbjct: 490 LVKHGPLSVGVNANAMQFYMGGVSHPIHALCSPKSLDHGVAIVGYGVHRTKYTHKNLPYW 549

Query: 556 LARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
           L +NSWGP   ++G++ + RG+ +CG+ Q+   A I+
Sbjct: 550 LIKNSWGPGWGEKGYYLLYRGDGSCGVNQMVSSAIIE 586

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|67773374|gb|AAY81944.1| cysteine protease 6 [Paragonimus westermani]

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 167/316 (52%), Gaps = 35/316 (11%)

Query: 290 ETFKAFIVKRGRQYANDEEIKERFEYFK---------QDGHKKHERYGTSEFSDRSPEEI 340
           E ++ F    G+ YAND++ K RF  FK         Q   +   RYG ++FSD +PEE 
Sbjct: 30  ELYEQFKRDYGKSYANDDDEK-RFAIFKDNLVRAQNYQLQEQGTARYGVTQFSDLTPEEF 88

Query: 341 LCKTGFKWSERTYERIVADR--EKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACG 398
             K             ++ R  ++VE++ +   K    P++ DWR+     P  DQ +CG
Sbjct: 89  AAK------------FLSSRFDDQVERVQLNDLK--AAPESVDWRELGAVAPVEDQGSCG 134

Query: 399 SCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY---THQAG 455
           SCWAFS+AG +EGQ+ +KTG+LV  SK QLV+C  Q SGC   DG   P  Y       G
Sbjct: 135 SCWAFSVAGNVEGQWFLKTGQLVSLSKQQLVDCDVQDSGC---DGGYPPTTYGEIIRMGG 191

Query: 456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSH 515
           LE+++DYPY    G +  C  D+SK+        +     +     + ++GP+S G+N+ 
Sbjct: 192 LEAQRDYPYV---GREQPCKLDESKLLAKINSSIVLEANEKKQAAYIAEHGPMSSGINAV 248

Query: 516 LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 575
            + FY       +   C P  L H VL VGYG +D +PYW+ +NSWG    ++G+F++ R
Sbjct: 249 TLQFYQSGISHPSKSQCQPDWLNHGVLSVGYGTEDGVPYWIIKNSWGTGWGEKGYFRLYR 308

Query: 576 GNNACGIEQIAGYATI 591
           G+  CGIE++   A I
Sbjct: 309 GDGTCGIEKVVSSAII 324

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|67773370|gb|AAY81942.1| cysteine protease 3 [Paragonimus westermani]

 Score =  191 bits (484), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 170/312 (54%), Gaps = 27/312 (8%)

Query: 656 ETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE---------RYGTSEFSDRSPEEI 706
           E ++ F    G+ YAN+++ K RF  FK +  +  +         RYG ++FSD +PEE 
Sbjct: 25  ELYEQFKRDYGKVYANEDDQK-RFAIFKDNLMRAQKLQLKDQGTARYGVTQFSDLTPEEF 83

Query: 707 LCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSC 766
             K         Y     + ++V+++     K    P+  DWR K       +Q +CGSC
Sbjct: 84  AAK---------YLSAPVNNDQVKRVRPTGLK--AAPERIDWRAKGAVTAVENQGSCGSC 132

Query: 767 WAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPS-IEYTHQAGLESEK 825
           WAFS AG +EGQ+ IKTG+LV  SK QLV+C +   GC+G +   S +E  H  GLES+ 
Sbjct: 133 WAFSTAGNVEGQWFIKTGQLVSLSKQQLVDCDRAADGCNGGWPASSYLEIMHMGGLESQD 192

Query: 826 DYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLNSDLIHD 884
           DYPY    G K +C  +K ++ L    D +    SE      L ++GPLS LLN+  +  
Sbjct: 193 DYPYA---GVKEQCFMEKERL-LAKIDDSIALGPSEDDNAAYLAEHGPLSTLLNAITLQY 248

Query: 885 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA 944
           Y    I  + E CSP DL HAVL VGY K+ ++PYW+++NSW     ++G+F++ RG+  
Sbjct: 249 YQSGIIHPSYEECSPVDLNHAVLTVGYDKEGDMPYWIIKNSWNVEWGEKGYFRLYRGDGT 308

Query: 945 CGIEQIAGYATI 956
           CGI ++   A I
Sbjct: 309 CGINRMPTSAII 320

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|242014216|ref|XP_002427787.1| Cathepsin F precursor, putative [Pediculus humanus corporis] gi|212512256|gb|EEB15049.1| Cathepsin F precursor, putative [Pediculus humanus corporis]

 Score =  189 bits (481), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 169/335 (50%), Gaps = 32/335 (9%)

Query: 274 TLAIEGSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQD---------GHKKH 324
           T  I+  +   NE +L++FK F++K  + Y + EE K+RF  F+ +           K  
Sbjct: 116 TKKIDNEIINKNEYLLQSFKDFVLKFNKVYFSKEEFKKRFRIFRANMKKINFLNKAEKGT 175

Query: 325 ERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVE-KDGPVPDAWDWR 383
            +YG +EFSD S  E     G K             +K E  L   E  D  +PD +DWR
Sbjct: 176 AQYGITEFSDLSVTEFKNYLGLK-------------KKPESKLPTAEIPDVKLPDNFDWR 222

Query: 384 KKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG 443
             N   P  +Q +CGSCWAFS+ G +EG +AIK  +L+  S+ +L++C K  +GC G   
Sbjct: 223 HYNAVTPVKNQGSCGSCWAFSVTGNIEGLWAIKKHELLSLSEQELIDCDKIDNGCNGGYM 282

Query: 444 LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILY 503
            E         GLE+E DYPY     E  KC  +K+++K+              + K LY
Sbjct: 283 PETYEAIMKLGGLETETDYPYE---AENEKCNLNKTEIKVKINGAVNLTKSELDIAKWLY 339

Query: 504 KYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD------IPYWLA 557
           K GP+S GLN++ + FY G         C+P +  H +L+VGYG          IPYW+ 
Sbjct: 340 KNGPVSAGLNANAMQFYLGGISHPPKILCNPEEQDHGILIVGYGIHKSSILKRTIPYWII 399

Query: 558 RNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
           +NSWG    ++G++++ RG+  CGI Q+   A I+
Sbjct: 400 KNSWGKHWGEKGYYRLYRGSGVCGINQMVSSALIN 434

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1026
WB|WBGene00007055	477	tag-196 [Caenorhabditis elegan	0.288	0.620	0.324	1.9e-42
FB|FBgn0260462	614	CG12163 [Drosophila melanogast	0.285	0.477	0.337	8.5e-42
UNIPROTKB|F1MHV4	375	CTSW "Uncharacterized protein"	0.241	0.661	0.325	1.7e-41
UNIPROTKB|E2RPX3	374	CTSW "Uncharacterized protein"	0.251	0.689	0.301	6.4e-41
RGD|1309354	371	Ctsw "cathepsin W" [Rattus nor	0.293	0.811	0.299	3.3e-33
ZFIN|ZDB-GENE-030131-9831	473	ctsf "cathepsin F" [Danio reri	0.288	0.625	0.3	2.5e-39
UNIPROTKB|F1RU48	460	CTSF "Uncharacterized protein"	0.277	0.619	0.324	1.1e-38
UNIPROTKB|E2RR02	460	CTSF "Uncharacterized protein"	0.342	0.763	0.297	8.6e-39
UNIPROTKB|G1M0X4	337	CTSH "Uncharacterized protein"	0.270	0.824	0.350	8.6e-39
UNIPROTKB|Q3T0I2	335	CTSH "Pro-cathepsin H" [Bos ta	0.275	0.844	0.342	1e-37

WB|WBGene00007055 tag-196 [Caenorhabditis elegans (taxid:6239)]

 Score = 459 (166.6 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 103/317 (32%), Positives = 160/317 (50%)

Query:   288 ILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH-----KKHER----YGTSEFSDRSPE 338
             I  +F  F+ +  ++Y N  E+ +RF  FK++       +K+E+    YG ++FSD +  
Sbjct:   170 IWNSFLDFVDRHEKKYTNKREVLKRFRVFKKNAKVIRELQKNEQGTAVYGFTKFSDMTTM 229

Query:   339 EIL-CKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQAAC 397
             E       ++W +  Y    A+             +  +P+++DWR+K       +Q  C
Sbjct:   230 EFKKIMLPYQWEQPVYPMEQAN----FEKHDVTINEEDLPESFDWREKGAVTQVKNQGNC 285

Query:   398 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAG 455
             GSCWAFS  G +EG + I   KLV  S+ +LV+C     GC G  GL      E     G
Sbjct:   286 GSCWAFSTTGNVEGAWFIAKNKLVSLSEQELVDCDSMDQGCNG--GLPSNAYKEIIRMGG 343

Query:   456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSH 515
             LE E  YPY +G GE   C   +  + ++        +    M+K L   GP+S+GLN++
Sbjct:   344 LEPEDAYPY-DGRGET--CHLVRKDIAVYINGSVELPHDEVEMQKWLVTKGPISIGLNAN 400

Query:   516 LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 575
              + FY    +      C P+ L H VL+VGYGK    PYW+ +NSWGP   + G+FK+ R
Sbjct:   401 TLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWGPNWGEAGYFKLYR 460

Query:   576 GNNACGIEQIAGYATID 592
             G N CG++++A  A ++
Sbjct:   461 GKNVCGVQEMATSALVN 477

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

FB|FBgn0260462 CG12163 [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 8.5e-42, P = 8.5e-42
 Identities = 111/329 (33%), Positives = 175/329 (53%)

Query:   283 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE---------RYGTSEFS 333
             FD  + L  F  F V+ GR+Y +  E + R   F+Q+     E         +YG +EF+
Sbjct:   301 FDKVDHL--FYKFQVRFGRRYVSTAERQMRLRIFRQNLKTIEELNANEMGSAKYGITEFA 358

Query:   334 DRSPEEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGD 393
             D +  E   +TG  W     +R  A +             G +P  +DWR+K+      +
Sbjct:   359 DMTSSEYKERTGL-W-----QRDEA-KATGGSAAVVPAYHGELPKEFDWRQKDAVTQVKN 411

Query:   394 QAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG--CDGLEQPIEYT 451
             Q +CGSCWAFS+ G +EG YA+KTG+L EFS+ +L++C    S C G   D   + I+  
Sbjct:   412 QGSCGSCWAFSVTGNIEGLYAVKTGELKEFSEQELLDCDTTDSACNGGLMDNAYKAIKDI 471

Query:   452 HQAGLESEKDYPYRNGNGEKFKCAYDK--SKVKLFTGKDFLYFNGSET-MKKILYKYGPL 508
                GLE E +YPY+    +K +C +++  S V++    D     G+ET M++ L   GP+
Sbjct:   472 --GGLEYEAEYPYK---AKKNQCHFNRTLSHVQVAGFVDLP--KGNETAMQEWLLANGPI 524

Query:   509 SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD------DIPYWLARNSWG 562
             S+G+N++ + FY G         CS  +L H VL+VGYG  D       +PYW+ +NSWG
Sbjct:   525 SIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWG 584

Query:   563 PIGPDEGFFKIERGNNACGIEQIAGYATI 591
             P   ++G++++ RG+N CG+ ++A  A +
Sbjct:   585 PRWGEQGYYRVYRGDNTCGVSEMATSAVL 613

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0045169 "fusome" evidence=IDA

GO:0035220 "wing disc development" evidence=IGI

GO:0022416 "chaeta development" evidence=IGI

UNIPROTKB|F1MHV4 CTSW "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 318 (117.0 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
 Identities = 88/270 (32%), Positives = 130/270 (48%)

Query:   656 ETFKAFIVKRGRQYANDEEIKERFEYFKQDGHK----KHERYGTSEF-----SDRSPEEI 706
             E F+ F ++  R Y N  E   R + F Q+  K    + E  GT+EF     SD + EE 
Sbjct:    40 EVFRLFQMQYNRSYPNPAEYARRLDIFAQNLAKAQRLQEEDLGTAEFGVTQFSDLTEEEF 99

Query:   707 LCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQAACGSC 766
             +   G   S+   E +   R                P   DWRK     P  DQ  C  C
Sbjct:   100 VQLYG---SQVAGEALGVSRKVGSEEWGESE-----PQTCDWRKVGTISPVRDQRNCNCC 151

Query:   767 WAFSIAGMLEGQYAIKTGKLVEFS-KSQLVECAKQCSGCDGCF-FEPSIEYTHQAGLESE 824
             WA + AG +E  +AIK    VE S + +L++C +  +GC G F ++  +   + +GL SE
Sbjct:   152 WAMAAAGNIEALWAIKFRHFVEVSVQPELLDCDRCGNGCRGGFVWDAFLTVLNNSGLASE 211

Query:   825 KDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNSDLIH 883
             KDYP+ N +G+  +C   K K K+   +DF+     E +M + L   GP++V +N  L+ 
Sbjct:   212 KDYPF-NGSGKTHRCLAKKYK-KVAWIQDFIILQACEQSMARHLATEGPITVTINMTLLQ 269

Query:   884 DYNGTPIRKNDETCSPYDLGHAVLLVGYGK 913
              Y    I+    TC P  + H+VLLVG+GK
Sbjct:   270 QYQKGVIKATPTTCDPTQVDHSVLLVGFGK 299

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E2RPX3 CTSW "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 305 (112.4 bits), Expect = 6.4e-41, Sum P(3) = 6.4e-41
 Identities = 81/269 (30%), Positives = 126/269 (46%)

Query:   656 ETFKAFIVKRGRQYANDEEIKERFEYFK----QDGHKKHERYGTSEFSDRSPEEILCKTG 711
             + F  F ++  R Y+N EE   R + F     Q    + E  GT+EF   +P   L +  
Sbjct:    40 QVFALFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEDEDLGTAEFGV-TPFSDLTEEE 98

Query:   712 FKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRK-KNVTGPAGDQAACGSCWAFS 770
             F      ++R+  +               PVP   DWRK   +  P   Q  C  CWA +
Sbjct:    99 FG-QFYGHQRMAGEAPSVGRKVESEEWGEPVPPTCDWRKLPGIISPIKQQGNCRCCWAMA 157

Query:   771 IAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPY 829
              AG +E  + I+  + VE S  +L++C +   GC G F ++  I   + +GL S KDYP+
Sbjct:   158 AAGNIEALWGIRYHQPVEVSVQELLDCGRCGDGCKGGFTWDAFITVLNNSGLASAKDYPF 217

Query:   830 KNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNSDLIHDYNGT 888
                N +  +C   K K K+   +DF+   G+E  +   L   GP++V +N  L+  Y   
Sbjct:   218 LG-NTKPHRCLAKKYK-KVAWIQDFIMLQGNEQAIAWYLATKGPITVTINMKLLQHYQKG 275

Query:   889 PIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
              I+    TC P  + H+VLLVG+GK  ++
Sbjct:   276 VIQATHTTCDPQRVDHSVLLVGFGKSKSV 304

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1309354 Ctsw "cathepsin W" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 100/334 (29%), Positives = 162/334 (48%)

Query:   290 ETFKAFIVKRGRQYANDEEIKERFEYFK----QDGHKKHERYGTSEFSDRSPEEILCKTG 345
             E FK F ++  R Y+N  E   R   F     Q    + E  GT+EF  ++P   L +  
Sbjct:    38 EVFKLFQIQFNRSYSNPAEYTRRLGIFAHNLAQAQRLQEEDLGTAEFG-QTPFSDLTEEE 96

Query:   346 FKW---SERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRK-KNVTGPAGDQAACGSCW 401
             F      +R  ERI+                  VP   DWRK KN+     +Q  C  CW
Sbjct:    97 FGQLYGHQRAPERIL----NMAKKVKSERWGESVPPTCDWRKVKNIISSIKNQGNCRCCW 152

Query:   402 AFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKD 461
             A + A  ++  + IKT + V+ S  +L++C +  +GC G    +  I   + +GL SE+D
Sbjct:   153 AIAAADNIQTLWRIKTQQFVDVSVQELLDCDRCGNGCNGGFVWDAYITVLNNSGLASEED 212

Query:   462 YPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLNSHLIHFY 520
             YP++ G+ +  +C  DK + K+   +DF   + +E  +   L  +GP++V +N  L+ +Y
Sbjct:   213 YPFQ-GHQKPHRCLADKYR-KVAWIQDFTMLSSNEQVIAGYLAIHGPITVTINMKLLQYY 270

Query:   521 NGTPIRKNDETCSPYDLGHAVLLVGYGKQD-----------------DIPYWLARNSWGP 563
                 I+    TC P+ + H+VLLVG+GK+                    PYW+ +NSWG 
Sbjct:   271 QKGVIKATPSTCDPHLVNHSVLLVGFGKEKGGMQTGTLLSHSRKPRRSTPYWILKNSWGA 330

Query:   564 IGPDEGFFKIERGNNACGIEQIAGYATIDVVIQR 597
                ++G+F++ RGNN CGI +    A +D  +++
Sbjct:   331 EWGEKGYFRLYRGNNTCGIAKYPITARVDRPVKK 364

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-9831 ctsf "cathepsin F" [Danio rerio (taxid:7955)]

 Score = 430 (156.4 bits), Expect = 2.5e-39, P = 2.5e-39
 Identities = 96/320 (30%), Positives = 156/320 (48%)

Query:   284 DNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG---------HKKHERYGTSEFSD 334
             ++  +L  FK F++   R Y++ EE ++R   F+Q+           +    YG ++FSD
Sbjct:   167 ESVELLTMFKNFMITYNRTYSSQEEAEKRLRIFQQNMKTAQTLQSLEQGSAEYGITKFSD 226

Query:   335 RSPEEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQ 394
              + +E      F+        +++                P PD WDWR      P  +Q
Sbjct:   227 LTEDE------FRMMY--LNPMLSQWSLKKEMKPAIPASAPAPDTWDWRDHGAVSPVKNQ 278

Query:   395 AACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGC--DGLEQPIEYTH 452
               CGSCWAFS+ G +EGQ+  KTG+L+  S+ +LV+C K    CGG       + IE  +
Sbjct:   279 GMCGSCWAFSVTGNIEGQWFKKTGQLLSLSEQELVDCDKLDQACGGGLPSNAYEAIE--N 336

Query:   453 QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL 512
               GLE+E DY Y    G K  C +   KV  +           + +   L + GP+S  L
Sbjct:   337 LGGLETETDYSY---TGHKQSCDFSTGKVAAYINSSVELPKDEKEIAAFLAENGPVSAAL 393

Query:   513 NSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFK 572
             N+  + FY           C+P+ + HAVLLVG+G+++ +P+W  +NSWG    ++G++ 
Sbjct:   394 NAFAMQFYRKGVSHPLKIFCNPWMIDHAVLLVGFGQRNGVPFWAIKNSWGEDYGEQGYYY 453

Query:   573 IERGNNACGIEQIAGYATID 592
             + RG+  CGI ++   A ++
Sbjct:   454 LYRGSGLCGIHKMCSSAIVN 473

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1RU48 CTSF "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 424 (154.3 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 102/314 (32%), Positives = 155/314 (49%)

Query:   292 FKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE---------RYGTSEFSDRSPEEILC 342
             FK F+    R Y   EE + R   F  +  +  +         RYG ++FSD + EE   
Sbjct:   163 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTKFSDLTEEEF-- 220

Query:   343 KTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQAACGSCWA 402
             +T +         ++ +               P P+ WDWRKK       DQ  CGSCWA
Sbjct:   221 RTIY------LNPLLQEEPGRKMRLAKSVSSLPPPE-WDWRKKGAVTKVKDQGMCGSCWA 273

Query:   403 FSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC-GGCDGLEQPIEYTHQAGLESEKD 461
             FS+ G +EGQ+ +K G L+  S+ +L++C K   GC GG          T   GLE+E+D
Sbjct:   274 FSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAIKT-LGGLETEED 332

Query:   462 YPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFY- 520
             Y YR   G    C+++  K K++           + +   L + GP+SV +N+  + FY 
Sbjct:   333 YSYR---GHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQFYR 389

Query:   521 NGT--PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 578
             +G   P+R     CSP+ + HAVLLVGYG +   P+W  +NSWG    +EG++ + RG+ 
Sbjct:   390 HGISHPLRP---LCSPWLIDHAVLLVGYGNRSATPFWAIKNSWGTDWGEEGYYYLYRGSG 446

Query:   579 ACGIEQIAGYATID 592
             ACG+  +A  A ++
Sbjct:   447 ACGVNIMASSAVVN 460

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E2RR02 CTSF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 425 (154.7 bits), Expect = 8.6e-39, P = 8.6e-39
 Identities = 115/387 (29%), Positives = 180/387 (46%)

Query:   226 DVVIQRLVLEKKAIMLIQAVFLLCGVASCL---CLPSLTDRITD---QVVARVDTLAIEG 279
             D  + +L + KK ++    V    G    L   C P  T ++TD   + ++ V  L  + 
Sbjct:    90 DPTVCQLPVSKKTLLCSFEVLDELGKHMLLRRDCGPVDT-KVTDDRNETLSSVLPLLNKD 148

Query:   280 SLTFD-NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE---------RYGT 329
              L  D +  +   FK F+    R Y   EE + R   F  +  +  +         +YG 
Sbjct:   149 PLPQDFSVKMASVFKEFVTTYNRTYETKEEAEWRMSVFSNNMVRAQKIQALDRGTAQYGI 208

Query:   330 SEFSDRSPEEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTG 389
             ++FSD + EE   +T +         ++ +             D   P  WDWR K    
Sbjct:   209 TKFSDLTEEEF--RTIY------LNPLLRENRGKKMRLAKSISDHAPPPEWDWRSKGAVT 260

Query:   390 PAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC-GGCDGLEQPI 448
                DQ  CGSCWAFS+ G +EGQ+ +K G L+  S+ +L++C K    C GG        
Sbjct:   261 KVKDQGMCGSCWAFSVTGNVEGQWFLKEGTLLSLSEQELLDCDKVDKACLGGLPSNAYSA 320

Query:   449 EYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPL 508
               T   GLE+E DY Y+   G    C++   K +++           + +   L K GP+
Sbjct:   321 IMT-LGGLETEDDYSYQ---GHLQACSFSAKKARVYINDSMELSQNEQKLAAWLAKKGPI 376

Query:   509 SVGLNSHLIHFY-NGT--PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIG 565
             SV +N+  + FY +G   P+R     CSP+ + HAVLLVGYG +  IP+W  +NSWG   
Sbjct:   377 SVAINAFGMQFYRHGISHPLRP---LCSPWLIDHAVLLVGYGNRSGIPFWAIKNSWGTDW 433

Query:   566 PDEGFFKIERGNNACGIEQIAGYATID 592
              +EG++ + RG+ ACG+  +A  A ++
Sbjct:   434 GEEGYYYLHRGSGACGVNTMASSAVVN 460

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|G1M0X4 CTSH "Uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 425 (154.7 bits), Expect = 8.6e-39, P = 8.6e-39
 Identities = 110/314 (35%), Positives = 158/314 (50%)

Query:   658 FKAFIVKRGRQYANDEEIKERFEYF-----KQDGHK--KHE-RYGTSEFSDRSPEEILCK 709
             FK+++V+  ++Y++ EE + R   F     K + H    H  + G ++FSD S  EI  K
Sbjct:    37 FKSWMVQHQKKYSS-EEYQHRLRTFVGNWRKINAHNAGNHTFKMGLNQFSDMSFAEI--K 93

Query:   710 TGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKN-VTGPAGDQAACGSCWA 768
               + WSE   +   A +             GP P   DWRKK     P  +Q  CGSCW 
Sbjct:    94 RKYLWSEP--QNCSATKGNYLRGT------GPYPPFVDWRKKGKFVSPVKNQGGCGSCWT 145

Query:   769 FSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS--GCDGCFFEPSIEYT-HQAGLESEK 825
             FS  G LE   AIKTGKL+  ++ QLV+CA+  +  GC G     + EY  +  G+  E 
Sbjct:   146 FSTTGALESAIAIKTGKLLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYIRYNRGIMGED 205

Query:   826 DYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVL--LNSDL 881
              YPYK  +G+   C +  SK   F  KD  +   N  + M + +  + P+S    +  D 
Sbjct:   206 SYPYKGQDGD---CKFQPSKAIAFV-KDVANITINDEQAMVEAVALFNPVSFAFEVTGDF 261

Query:   882 IHDYNGTPIRKNDETC--SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIE 939
             +    G     +  +C  +P  + HAVL VGYG+Q+ +PYW+V+NSWGP     G+F IE
Sbjct:   262 MMYRKGV---YSSTSCHKTPDKVNHAVLAVGYGEQNGVPYWIVKNSWGPQWGMHGYFLIE 318

Query:   940 RGNNACGIEQIAGY 953
             RG N CG+   A Y
Sbjct:   319 RGKNMCGLAACASY 332

GO:0001656 "metanephros development" evidence=ISS

GO:0001913 "T cell mediated cytotoxicity" evidence=ISS

GO:0002764 "immune response-regulating signaling pathway" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004177 "aminopeptidase activity" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISS

GO:0010813 "neuropeptide catabolic process" evidence=ISS

GO:0010815 "bradykinin catabolic process" evidence=ISS

GO:0010952 "positive regulation of peptidase activity" evidence=ISS

GO:0016505 "apoptotic protease activator activity" evidence=ISS

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0031638 "zymogen activation" evidence=ISS

GO:0031648 "protein destabilization" evidence=ISS

GO:0032526 "response to retinoic acid" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043129 "surfactant homeostasis" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=ISS

GO:0070324 "thyroid hormone binding" evidence=ISS

GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS

GO:0097208 "alveolar lamellar body" evidence=ISS

UNIPROTKB|Q3T0I2 CTSH "Pro-cathepsin H" [Bos taurus (taxid:9913)]

 Score = 415 (151.1 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 110/321 (34%), Positives = 164/321 (51%)

Query:   653 NILETF--KAFIVKRGRQYANDEEIKERFEYFKQD-----GH--KKHE-RYGTSEFSDRS 702
             N LE F  ++++V+  ++Y++ EE   R + F  +      H  + H  + G ++FSD S
Sbjct:    28 NSLEKFHFQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMS 86

Query:   703 PEEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKK-NVTGPAGDQA 761
              +E+  K  + WSE   +   A +             GP P + DWRKK N   P  +Q 
Sbjct:    87 FDEL--KRKYLWSEP--QNCSATKSNYLRGT------GPYPPSMDWRKKGNFVTPVKNQG 136

Query:   762 ACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS--GCDGCFFEPSIEYT-HQ 818
             +CGSCW FS  G LE   AI TGKL   ++ QLV+CA+  +  GC G     + EY  + 
Sbjct:   137 SCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYN 196

Query:   819 AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVL 876
              G+  E  YPY+  +G+   C Y  SK   F  KD  +   N  E M + +  + P+S  
Sbjct:   197 KGIMGEDTYPYRGQDGD---CKYQPSKAIAFV-KDVANITLNDEEAMVEAVALHNPVSFA 252

Query:   877 --LNSDLIHDYNGTPIRKNDETC--SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPD 932
               + +D +    G     +  +C  +P  + HAVL VGYG++  IPYW+V+NSWGP    
Sbjct:   253 FEVTADFMMYRKGI---YSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGM 309

Query:   933 EGFFKIERGNNACGIEQIAGY 953
             +G+F IERG N CG+   A +
Sbjct:   310 KGYFLIERGKNMCGLAACASF 330

GO:0031638 "zymogen activation" evidence=ISS

GO:0031648 "protein destabilization" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0010815 "bradykinin catabolic process" evidence=ISS

GO:0043129 "surfactant homeostasis" evidence=ISS

GO:0010813 "neuropeptide catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0001656 "metanephros development" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0001913 "T cell mediated cytotoxicity" evidence=ISS

GO:0016505 "apoptotic protease activator activity" evidence=ISS

GO:0010952 "positive regulation of peptidase activity" evidence=ISS

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=ISS

GO:0002764 "immune response-regulating signaling pathway" evidence=ISS

GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0070324 "thyroid hormone binding" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=ISS

GO:0097208 "alveolar lamellar body" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0004177 "aminopeptidase activity" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0032526 "response to retinoic acid" evidence=ISS

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1026
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	6e-67
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	1e-66
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	2e-66
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	4e-66
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	6e-66
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	2e-63
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	1e-48
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	2e-48
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	1e-45
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	7e-40
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	8e-40
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	1e-36
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	2e-36
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	1e-35
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-35
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	2e-35
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	2e-35
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	3e-33
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	7e-33
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-31
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	3e-30
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	5e-30
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	6e-30
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	4e-29
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	2e-28
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	2e-28
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	4e-28
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	7e-21
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	1e-19
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	5e-19
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	3e-18
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	4e-18
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	4e-17
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	4e-17
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	5e-17
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	1e-15
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	3e-12
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	4e-08
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	6e-08
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	6e-08
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	8e-08
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-07
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	3e-07
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	6e-06
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	2e-05
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	2e-05
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	2e-05
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	2e-05
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	5e-05
smart00848	57	smart00848, Inhibitor_I29, Cathepsin propeptide in	5e-05
smart00848	57	smart00848, Inhibitor_I29, Cathepsin propeptide in	5e-05
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	1e-04
pfam08246	58	pfam08246, Inhibitor_I29, Cathepsin propeptide inh	4e-04
pfam08246	58	pfam08246, Inhibitor_I29, Cathepsin propeptide inh	4e-04
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	5e-04
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	0.003

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  222 bits (569), Expect = 6e-67
 Identities = 95/215 (44%), Positives = 124/215 (57%), Gaps = 8/215 (3%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P++ DWR+K    P  DQ  CGSCWAFS  G LEG YAIKTGKLV  S+ QLV+C+   +
Sbjct: 1   PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGN 60

Query: 72  -GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGS 129
            GC+G   + + EY    GL SE DYPY   +G    C Y+ SKV    TG   +     
Sbjct: 61  NGCNGGNPDNAFEYVKNGGLASESDYPYTGKDG---TCKYNSSKVGAKITGYSNVPPGDE 117

Query: 130 ETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
           E +K  L  YGP+SV ++ S     Y G     +   CS  +L HAVLLVGYG ++ + Y
Sbjct: 118 EALKAALANYGPVSVAIDASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYGTENGVDY 175

Query: 189 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 223
           W+V+NSWG    ++G+ +I RG+N CGI   A Y 
Sbjct: 176 WIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  222 bits (567), Expect = 1e-66
 Identities = 95/215 (44%), Positives = 125/215 (58%), Gaps = 8/215 (3%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P++ DWR+K    P  DQ +CGSCWAFS  G LEG YAIKTGKLV  S+ QLV+C+   +
Sbjct: 1   PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGN 60

Query: 803 -GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGS 860
            GC+G   + + EY    GL SE DYPY   +G    C Y+ SKV    TG   +     
Sbjct: 61  NGCNGGNPDNAFEYVKNGGLASESDYPYTGKDG---TCKYNSSKVGAKITGYSNVPPGDE 117

Query: 861 ETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
           E +K  L  YGP+SV ++ S     Y G     +   CS  +L HAVLLVGYG ++ + Y
Sbjct: 118 EALKAALANYGPVSVAIDASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYGTENGVDY 175

Query: 920 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 954
           W+V+NSWG    ++G+ +I RG+N CGI   A Y 
Sbjct: 176 WIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  221 bits (566), Expect = 2e-66
 Identities = 97/217 (44%), Positives = 125/217 (57%), Gaps = 11/217 (5%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P++ DWR+K    P  DQ +CGSCWAFS  G LEG YAIKTGKLV  S+ QLV+C+   S
Sbjct: 1   PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCST--S 58

Query: 437 GCGGCDG--LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLF-TGKDFLYFN 493
           G  GC+G   +   EY    GL SE DYPY   +G    C Y+ SKV    TG   +   
Sbjct: 59  GNNGCNGGNPDNAFEYVKNGGLASESDYPYTGKDG---TCKYNSSKVGAKITGYSNVPPG 115

Query: 494 GSETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDI 552
             E +K  L  YGP+SV ++ S    FY G     +   CS  +L HAVLLVGYG ++ +
Sbjct: 116 DEEALKAALANYGPVSVAIDASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYGTENGV 173

Query: 553 PYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 589
            YW+ +NSWG    ++G+ +I RG+N CGI   A Y 
Sbjct: 174 DYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  220 bits (564), Expect = 4e-66
 Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 11/219 (5%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+++DWR+K    P  DQ  CGSCWAFS  G LEG+Y IKTGKLV  S+ QLV+C    
Sbjct: 1   LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDTGN 60

Query: 71  SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFN 127
           +GC+G   + + EY  +  G+ +E DYPY   +G    C + KS  K    K +  + +N
Sbjct: 61  NGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDG---TCKFKKSNSKYAKIKGYGDVPYN 117

Query: 128 GSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 185
             E ++  L K GP+SV ++   D    Y           CS   L HAVL+VGYG ++ 
Sbjct: 118 DEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVY--KHTECSGE-LDHAVLIVGYGTENG 174

Query: 186 IPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 224
           +PYW+V+NSWG    + G+F+I RG N CGI   A Y  
Sbjct: 175 VPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213

Length = 213

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  220 bits (563), Expect = 6e-66
 Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 11/219 (5%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+++DWR+K    P  DQ  CGSCWAFS  G LEG+Y IKTGKLV  S+ QLV+C    
Sbjct: 1   LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDTGN 60

Query: 802 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFN 858
           +GC+G   + + EY  +  G+ +E DYPY   +G    C + KS  K    K +  + +N
Sbjct: 61  NGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDG---TCKFKKSNSKYAKIKGYGDVPYN 117

Query: 859 GSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
             E ++  L K GP+SV ++   D    Y           CS   L HAVL+VGYG ++ 
Sbjct: 118 DEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVY--KHTECSGE-LDHAVLIVGYGTENG 174

Query: 917 IPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 955
           +PYW+V+NSWG    + G+F+I RG N CGI   A Y  
Sbjct: 175 VPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213

Length = 213

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  213 bits (545), Expect = 2e-63
 Identities = 91/227 (40%), Positives = 125/227 (55%), Gaps = 26/227 (11%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P+++DWR+K    P  DQ  CGSCWAFS  G LEG+Y IKTGKLV  S+ QLV+C    
Sbjct: 1   LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDC---D 57

Query: 436 SGCGGCDG--LEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLY- 491
           +G  GC+G   +   EY  +  G+ +E DYPY   +G    C + KS  K    K +   
Sbjct: 58  TGNNGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDG---TCKFKKSNSKYAKIKGYGDV 114

Query: 492 -FNGSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLL 543
            +N  E ++  L K GP+SV ++++   F       Y  T        CS   L HAVL+
Sbjct: 115 PYNDEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTE-------CSGE-LDHAVLI 166

Query: 544 VGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 590
           VGYG ++ +PYW+ +NSWG    + G+F+I RG N CGI   A Y  
Sbjct: 167 VGYGTENGVPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213

Length = 213

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  170 bits (433), Expect = 1e-48
 Identities = 80/218 (36%), Positives = 104/218 (47%), Gaps = 49/218 (22%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+++DWRKK    P  DQ  CGSCWAFS  G LEG+Y IKTGKLV  S+ QLV+C+   
Sbjct: 1   LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSGGG 60

Query: 71  S-GCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
           + GC+G   + + EY  +  GLE+E  YPY  +                    DF     
Sbjct: 61  NCGCNGGLPDNAFEYIKKNGGLETESCYPYTGSVAID--------------ASDFQF--- 103

Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DNI 186
                   YK G             Y+          C    L HAVL+VGYG +  +  
Sbjct: 104 --------YKSG------------IYDHP-------GCGSGTLDHAVLIVGYGTEVENGK 136

Query: 187 PYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYA 223
            YW+V+NSWG    + G+F+I RG NN CGIE      
Sbjct: 137 DYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVASY 174

Length = 175

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  169 bits (431), Expect = 2e-48
 Identities = 80/218 (36%), Positives = 104/218 (47%), Gaps = 49/218 (22%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+++DWRKK    P  DQ  CGSCWAFS  G LEG+Y IKTGKLV  S+ QLV+C+   
Sbjct: 1   LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSGGG 60

Query: 802 S-GCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
           + GC+G   + + EY  +  GLE+E  YPY  +                    DF     
Sbjct: 61  NCGCNGGLPDNAFEYIKKNGGLETESCYPYTGSVAID--------------ASDFQF--- 103

Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DNI 917
                   YK G             Y+          C    L HAVL+VGYG +  +  
Sbjct: 104 --------YKSG------------IYDHP-------GCGSGTLDHAVLIVGYGTEVENGK 136

Query: 918 PYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYA 954
            YW+V+NSWG    + G+F+I RG NN CGIE      
Sbjct: 137 DYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVASY 174

Length = 175

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  161 bits (410), Expect = 1e-45
 Identities = 79/220 (35%), Positives = 101/220 (45%), Gaps = 52/220 (23%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P+++DWRKK    P  DQ  CGSCWAFS  G LEG+Y IKTGKLV  S+ QLV+C+   
Sbjct: 1   LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSGGG 60

Query: 436 SGCGGCDG--LEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
           +   GC+G   +   EY  +  GLE+E  YPY                       DF   
Sbjct: 61  N--CGCNGGLPDNAFEYIKKNGGLETESCYPYTGSVAID--------------ASDFQ-- 102

Query: 493 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--D 550
                     YK G             Y+          C    L HAVL+VGYG +  +
Sbjct: 103 ---------FYKSG------------IYDHP-------GCGSGTLDHAVLIVGYGTEVEN 134

Query: 551 DIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYA 589
              YW+ +NSWG    + G+F+I RG NN CGIE      
Sbjct: 135 GKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVASY 174

Length = 175

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score =  151 bits (381), Expect = 7e-40
 Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 22/305 (7%)

Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQD--------GHKKHERYGTSEFSDRSPEEILCK 709
           F+ F     R Y    E ++R   F+++            H R+G ++F D S  E   +
Sbjct: 38  FEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAAR 97

Query: 710 TGFKWSERTYERIVADREKVEKMLMEVEKD-GPVPDAWDWRKKNVTGPAGDQAACGSCWA 768
                +   Y    A ++   +   +   D   VPDA DWR+K    P  +Q ACGSCWA
Sbjct: 98  Y---LNGAAY--FAAAKQHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWA 152

Query: 769 FSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY--THQAG-LESEK 825
           FS  G +E Q+A+   KLV  S+ QLV C    +GC G     + E+   +  G + +EK
Sbjct: 153 FSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEK 212

Query: 826 DYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNSDLIHD 884
            YPY + NG+  +C+             ++    SE  M   L K GP+S+ +++     
Sbjct: 213 SYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMS 272

Query: 885 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA 944
           Y+   +     +C    L H VLLVGY     +PYW+++NSWG    ++G+ ++  G NA
Sbjct: 273 YHSGVL----TSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNA 328

Query: 945 CGIEQ 949
           C +  
Sbjct: 329 CLLTG 333

Length = 348

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score =  151 bits (381), Expect = 8e-40
 Identities = 96/307 (31%), Positives = 146/307 (47%), Gaps = 25/307 (8%)

Query: 292 FKAFIVKRGRQYANDEEIKERFEYFKQD--------GHKKHERYGTSEFSDRSPEEILCK 343
           F+ F     R Y    E ++R   F+++            H R+G ++F D S  E   +
Sbjct: 38  FEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAAR 97

Query: 344 TGFKWSERTYERIVADREKVEKMLMEVEKD-GPVPDAWDWRKKNVTGPAGDQAACGSCWA 402
                +   Y    A ++   +   +   D   VPDA DWR+K    P  +Q ACGSCWA
Sbjct: 98  Y---LNGAAY--FAAAKQHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWA 152

Query: 403 FSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEY--THQAG-LES 458
           FS  G +E Q+A+   KLV  S+ QLV C    +GCGG  GL  Q  E+   +  G + +
Sbjct: 153 FSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGG--GLMLQAFEWVLRNMNGTVFT 210

Query: 459 EKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLNSHLI 517
           EK YPY +GNG+  +C+             ++    SE  M   L K GP+S+ +++   
Sbjct: 211 EKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSF 270

Query: 518 HFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN 577
             Y+   +     +C    L H VLLVGY    ++PYW+ +NSWG    ++G+ ++  G 
Sbjct: 271 MSYHSGVL----TSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV 326

Query: 578 NACGIEQ 584
           NAC +  
Sbjct: 327 NACLLTG 333

Length = 348

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score =  144 bits (365), Expect = 1e-36
 Identities = 103/364 (28%), Positives = 151/364 (41%), Gaps = 54/364 (14%)

Query: 623 LPSLTDRITDQVVARVDTLAIEGSLTFDNENILET---FKAFIVKRGRQYANDEEIKERF 679
            P L     D  V  +  L  +G ++ D +   E    F+ F  K  R++A   E   RF
Sbjct: 88  FPRLDKSKRDSYVDELTRLFKDGYISDDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRF 147

Query: 680 EYFKQD-----GHKKHERY--GTSEFSDRSPEEI--------LCKTGFKWSERTY--ERI 722
             F+ +      HK  E Y    ++FSD + EE         +       S       R 
Sbjct: 148 LTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARH 207

Query: 723 VADREKVEKMLMEVEKDGPVPDA-------WDWRKKNVTGPAGDQAA-CGSCWAFSIAGM 774
           V++   ++ +      D  V D         DWR+ +      DQ   CGSCWAFS  G 
Sbjct: 208 VSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGS 267

Query: 775 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANG 834
           +E  Y I   K V+ S+ +LV C  +  GC G + + ++EY    GL S  D PY   +G
Sbjct: 268 VESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKDG 327

Query: 835 EKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS--DLIHD----YNGT 888
              KC    +K        +L   G + + K L    P  V +    +L+      YNG 
Sbjct: 328 ---KCVVSSTKKVYIDS--YLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGVYNG- 380

Query: 889 PIRKNDETCSPYDLGHAVLLV--GYGKQDNIPYWLVRNSWGPIGPDEGFFKIER---GNN 943
                   C    L HAVLLV  GY ++    YW+++NSWG    + G+ ++ER   G +
Sbjct: 381 -------ECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTD 432

Query: 944 ACGI 947
            CGI
Sbjct: 433 KCGI 436

Length = 448

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score =  140 bits (355), Expect = 2e-36
 Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           VPDA DWR+K    P  +Q  CGSCWAFS  G +E Q+A+   KLV  S+ QLV C    
Sbjct: 126 VPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVD 185

Query: 71  SGCDGCFFEPSIEY--THQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
           +GC G     + E+   +  G + +EK YPY + NG+  +C+             ++   
Sbjct: 186 NGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSME 245

Query: 128 GSE-TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
            SE  M   L K GP+S+ +++     Y+   +     +C    L H VLLVGY     +
Sbjct: 246 SSERVMAAWLAKNGPISIAVDASSFMSYHSGVL----TSCIGEQLNHGVLLVGYNMTGEV 301

Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 218
           PYW+++NSWG    ++G+ ++  G NAC +  
Sbjct: 302 PYWVIKNSWGEDWGEKGYVRVTMGVNACLLTG 333

Length = 348

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score =  141 bits (358), Expect = 1e-35
 Identities = 103/319 (32%), Positives = 151/319 (47%), Gaps = 46/319 (14%)

Query: 652 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHK--KHE-------RYGTSEFSDRS 702
           EN+  +F  FI + G++Y   +E+++R+  F ++  K   H        + G + F D S
Sbjct: 164 ENV-NSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLS 222

Query: 703 PEEI------LCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPD-AWDWRKKNVTG 755
            EE       L    FK S       V + + V K      KD       +DWR  N   
Sbjct: 223 FEEFKKKYLTLKSFDFK-SNGKKSPRVINYDDVIKKYKP--KDATFDHAKYDWRLHNGVT 279

Query: 756 PAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCF----FEP 811
           P  DQ  CGSCWAFS  G++E QYAI+  +LV  S+ +LV+C+ + +GC G      FE 
Sbjct: 280 PVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFED 339

Query: 812 SIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYG 871
            IE     GL SE DYPY +   E   C  D+ K K +  K ++     +  K+ +   G
Sbjct: 340 MIEL---GGLCSEDDYPYVSDTPE--LCNIDRCKEK-YKIKSYVSIP-EDKFKEAIRFLG 392

Query: 872 PLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP----------YW 920
           P+SV +  SD    Y G      D  C   +  HAV+LVGYG ++             Y+
Sbjct: 393 PISVSIAVSDDFAFYKGGIF---DGECG-EEPNHAVILVGYGMEEIYNSDTKKMEKRYYY 448

Query: 921 LVRNSWGPIGPDEGFFKIE 939
           +++NSWG    ++GF +IE
Sbjct: 449 IIKNSWGESWGEKGFIRIE 467

Length = 489

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score =  140 bits (355), Expect = 2e-35
 Identities = 103/366 (28%), Positives = 148/366 (40%), Gaps = 57/366 (15%)

Query: 257 LPSLTDRITDQVVARVDTLAIEGSLTFDNENILET---FKAFIVKRGRQYANDEEIKERF 313
            P L     D  V  +  L  +G ++ D +   E    F+ F  K  R++A   E   RF
Sbjct: 88  FPRLDKSKRDSYVDELTRLFKDGYISDDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRF 147

Query: 314 EYFKQD-----GHKKHERY--GTSEFSDRSPEEI--------LCKTGFKWSERTY--ERI 356
             F+ +      HK  E Y    ++FSD + EE         +       S       R 
Sbjct: 148 LTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARH 207

Query: 357 VADREKVEKMLMEVEKDGPVPDA-------WDWRKKNVTGPAGDQAA-CGSCWAFSIAGM 408
           V++   ++ +      D  V D         DWR+ +      DQ   CGSCWAFS  G 
Sbjct: 208 VSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGS 267

Query: 409 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 467
           +E  Y I   K V+ S+ +LV C  +  GC G  G  +  +EY    GL S  D PY   
Sbjct: 268 VESLYKIYRDKSVDLSEQELVNCDTKSQGCSG--GYPDTALEYVKNKGLSSSSDVPYL-- 323

Query: 468 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSH--LIHF----YN 521
             +  KC    +K        +L   G + + K L    P  V +     L+ +    YN
Sbjct: 324 -AKDGKCVVSSTKKVYIDS--YLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGVYN 379

Query: 522 GTPIRKNDETCSPYDLGHAVLLV--GYGKQDDIPYWLARNSWGPIGPDEGFFKIER---G 576
           G         C    L HAVLLV  GY ++    YW+ +NSWG    + G+ ++ER   G
Sbjct: 380 G--------ECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEG 430

Query: 577 NNACGI 582
            + CGI
Sbjct: 431 TDKCGI 436

Length = 448

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  134 bits (340), Expect = 2e-35
 Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 31/242 (12%)

Query: 12  PDAWDWR----KKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVE------FSKS 61
           P ++DW       N   P  +Q  CGSC+AF+    LE +  I + K          S  
Sbjct: 2   PKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQ 61

Query: 62  QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGK 121
            ++ C++   GCDG F     ++    G+ +E  +PY   +     C    S+ + +   
Sbjct: 62  HVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTADDDRP--CKASPSECRRYYFS 119

Query: 122 DFLHFNG------SETMKKILYKYGPLSVLL--NSDLIHDYNGT-PIRKNDETCS----- 167
           D+ +  G       + MK  +Y+ GP+ V     SD      G      NDE        
Sbjct: 120 DYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDN 179

Query: 168 --PYDL-GHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 222
             P++L  HAVLLVG+G+ +     YW+V+NSWG    ++G+FKI RG N CGIE  A +
Sbjct: 180 FNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVF 239

Query: 223 AT 224
           A 
Sbjct: 240 AY 241

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  134 bits (340), Expect = 2e-35
 Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 31/242 (12%)

Query: 743 PDAWDWR----KKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVE------FSKS 792
           P ++DW       N   P  +Q  CGSC+AF+    LE +  I + K          S  
Sbjct: 2   PKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQ 61

Query: 793 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGK 852
            ++ C++   GCDG F     ++    G+ +E  +PY   +     C    S+ + +   
Sbjct: 62  HVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTADDDRP--CKASPSECRRYYFS 119

Query: 853 DFLHFNG------SETMKKILYKYGPLSVLL--NSDLIHDYNGT-PIRKNDETCS----- 898
           D+ +  G       + MK  +Y+ GP+ V     SD      G      NDE        
Sbjct: 120 DYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDN 179

Query: 899 --PYDL-GHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 953
             P++L  HAVLLVG+G+ +     YW+V+NSWG    ++G+FKI RG N CGIE  A +
Sbjct: 180 FNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVF 239

Query: 954 AT 955
           A 
Sbjct: 240 AY 241

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  128 bits (324), Expect = 3e-33
 Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 34/244 (13%)

Query: 377 PDAWDWR----KKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVE------FSKS 426
           P ++DW       N   P  +Q  CGSC+AF+    LE +  I + K          S  
Sbjct: 2   PKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQ 61

Query: 427 QLVECAKQCSGCGGCDGLEQPI-EYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFT 485
            ++ C++   GC G  G    + ++    G+ +E  +PY   +     C    S+ + + 
Sbjct: 62  HVLSCSQYSQGCDG--GFPFLVGKFAEDFGIVTEDYFPYTADDDRP--CKASPSECRRYY 117

Query: 486 GKDFLYFNG------SETMKKILYKYGPLSVGL--NSHLIHFYNGT-PIRKNDETCS--- 533
             D+ Y  G       + MK  +Y+ GP+ V     S    +  G      NDE      
Sbjct: 118 FSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDN 177

Query: 534 ----PYDL-GHAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIA 586
               P++L  HAVLLVG+G+ +     YW+ +NSWG    ++G+FKI RG N CGIE  A
Sbjct: 178 DNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQA 237

Query: 587 GYAT 590
            +A 
Sbjct: 238 VFAY 241

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score =  133 bits (337), Expect = 7e-33
 Identities = 102/319 (31%), Positives = 150/319 (47%), Gaps = 45/319 (14%)

Query: 286 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGHK--KHE-------RYGTSEFSDRS 336
           EN+  +F  FI + G++Y   +E+++R+  F ++  K   H        + G + F D S
Sbjct: 164 ENV-NSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLS 222

Query: 337 PEEI------LCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPD-AWDWRKKNVTG 389
            EE       L    FK S       V + + V K      KD       +DWR  N   
Sbjct: 223 FEEFKKKYLTLKSFDFK-SNGKKSPRVINYDDVIKKYKP--KDATFDHAKYDWRLHNGVT 279

Query: 390 PAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQ 446
           P  DQ  CGSCWAFS  G++E QYAI+  +LV  S+ +LV+C+ + +GC G    +  E 
Sbjct: 280 PVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFED 339

Query: 447 PIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG 506
            IE     GL SE DYPY +   E   C  D+ K K +  K ++     +  K+ +   G
Sbjct: 340 MIEL---GGLCSEDDYPYVSDTPE--LCNIDRCKEK-YKIKSYVSIP-EDKFKEAIRFLG 392

Query: 507 PLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP----------YW 555
           P+SV +  S    FY G      D  C   +  HAV+LVGYG ++             Y+
Sbjct: 393 PISVSIAVSDDFAFYKGGIF---DGECG-EEPNHAVILVGYGMEEIYNSDTKKMEKRYYY 448

Query: 556 LARNSWGPIGPDEGFFKIE 574
           + +NSWG    ++GF +IE
Sbjct: 449 IIKNSWGESWGEKGFIRIE 467

Length = 489

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score =  128 bits (324), Expect = 2e-31
 Identities = 71/213 (33%), Positives = 101/213 (47%), Gaps = 27/213 (12%)

Query: 16  DWRKKNVTGPAGDQA-DCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCD 74
           DWR+ +      DQ  +CGSCWAFS  G +E  Y I   K V+ S+ +LV C  +  GC 
Sbjct: 239 DWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTKSQGCS 298

Query: 75  GCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKK 134
           G + + ++EY    GL S  D PY   +G   KC    +K        +L   G + + K
Sbjct: 299 GGYPDTALEYVKNKGLSSSSDVPYLAKDG---KCVVSSTKKVYIDS--YLVAKGKDVLNK 353

Query: 135 ILYKYGPLSVLLNS--DLIHD----YNGTPIRKNDETCSPYDLGHAVLLV--GYGKQDNI 186
            L    P  V +    +L+      YNG         C    L HAVLLV  GY ++   
Sbjct: 354 SLV-ISPTVVYIAVSRELLKYKSGVYNG--------ECGKS-LNHAVLLVGEGYDEKTKK 403

Query: 187 PYWLVRNSWGPIGPDEGFFKIER---GNNACGI 216
            YW+++NSWG    + G+ ++ER   G + CGI
Sbjct: 404 RYWIIKNSWGTDWGENGYMRLERTNEGTDKCGI 436

Length = 448

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  119 bits (300), Expect = 3e-30
 Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 32/234 (13%)

Query: 12  PDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVE 65
           P+++D R+K       G   DQ +CGSCWAFS       +  I++   + V  S   L+ 
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 66  CAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKF------------------ 106
           C   C  GC+G + + + +Y    G+ +    PY                          
Sbjct: 61  CCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQ 120

Query: 107 -KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV--LLNSDLIHDYNGTPIRKND 163
             C     + K      +   +    + K +   GP+     +  D ++ Y     +   
Sbjct: 121 DGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLY-YKSGVYQH-- 177

Query: 164 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 217
            T      GHAV ++G+G ++ +PYWL  NSWG    + G+F+I RG+N CGIE
Sbjct: 178 -TSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIE 230

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score =  125 bits (315), Expect = 5e-30
 Identities = 76/210 (36%), Positives = 109/210 (51%), Gaps = 26/210 (12%)

Query: 14  AWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 73
            +DWR  N   P  DQ +CGSCWAFS  G++E QYAI+  +LV  S+ +LV+C+ + +GC
Sbjct: 269 KYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFKNNGC 328

Query: 74  DGCF----FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
            G      FE  IE     GL SE DYPY +   E   C  D+ K K +  K ++     
Sbjct: 329 YGGLIPNAFEDMIEL---GGLCSEDDYPYVSDTPE--LCNIDRCKEK-YKIKSYVSIP-E 381

Query: 130 ETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP- 187
           +  K+ +   GP+SV +  SD    Y G      D  C   +  HAV+LVGYG ++    
Sbjct: 382 DKFKEAIRFLGPISVSIAVSDDFAFYKGGIF---DGECG-EEPNHAVILVGYGMEEIYNS 437

Query: 188 ---------YWLVRNSWGPIGPDEGFFKIE 208
                    Y++++NSWG    ++GF +IE
Sbjct: 438 DTKKMEKRYYYIIKNSWGESWGEKGFIRIE 467

Length = 489

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  118 bits (298), Expect = 6e-30
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 32/234 (13%)

Query: 743 PDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVE 796
           P+++D R+K       G   DQ  CGSCWAFS       +  I++   + V  S   L+ 
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 797 CAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKF------------------ 837
           C   C  GC+G + + + +Y    G+ +    PY                          
Sbjct: 61  CCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQ 120

Query: 838 -KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV--LLNSDLIHDYNGTPIRKND 894
             C     + K      +   +    + K +   GP+     +  D ++ Y     +   
Sbjct: 121 DGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLY-YKSGVYQH-- 177

Query: 895 ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 948
            T      GHAV ++G+G ++ +PYWL  NSWG    + G+F+I RG+N CGIE
Sbjct: 178 -TSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIE 230

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  116 bits (292), Expect = 4e-29
 Identities = 64/235 (27%), Positives = 99/235 (42%), Gaps = 33/235 (14%)

Query: 377 PDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVE 430
           P+++D R+K       G   DQ  CGSCWAFS       +  I++   + V  S   L+ 
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 431 CAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPYRNGNGEKF--------------- 472
           C   CSGCG GC+G   +   +Y    G+ +    PY                       
Sbjct: 61  C---CSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTP 117

Query: 473 ----KCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKN 528
                C     + K      +   +    + K +   GP+      +    Y  + + ++
Sbjct: 118 KCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQH 177

Query: 529 DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIE 583
             T      GHAV ++G+G ++ +PYWLA NSWG    + G+F+I RG+N CGIE
Sbjct: 178 --TSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIE 230

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score =  114 bits (286), Expect = 2e-28
 Identities = 57/209 (27%), Positives = 83/209 (39%), Gaps = 17/209 (8%)

Query: 15  WDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQ--- 69
            D R   +T P  +Q   GSCWAF+ A  LE  Y IK G  + V+ S   L  CA     
Sbjct: 2   VDLRPLRLT-PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECL 60

Query: 70  ---CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 124
               S   G      ++     G+  E+DYPY   +  +   +           KD+  +
Sbjct: 61  GINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRV 120

Query: 125 HFNGSETMKKILYKYGPLSV--LLNSDLIHDYNGTPIR--KNDETCSPYDLGHAVLLVGY 180
             N  E +K+ L K GP+     + S       G                 GHAV++VGY
Sbjct: 121 LKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGY 180

Query: 181 GKQ--DNIPYWLVRNSWGPIGPDEGFFKI 207
                +    ++V+NSWG    D G+ +I
Sbjct: 181 DDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score =  113 bits (285), Expect = 2e-28
 Identities = 59/209 (28%), Positives = 87/209 (41%), Gaps = 16/209 (7%)

Query: 380 WDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQ-CS 436
            D R   +T P  +Q + GSCWAF+ A  LE  Y IK G  + V+ S   L  CA   C 
Sbjct: 2   VDLRPLRLT-PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECL 60

Query: 437 GCG-GCDG---LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
           G    CDG   L   ++     G+  E+DYPY   +  +   +           KD+  +
Sbjct: 61  GINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRV 120

Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFY----NGTPIRKNDETCSPYDLGHAVLLVGY 546
             N  E +K+ L K GP+  G + +                          GHAV++VGY
Sbjct: 121 LKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGY 180

Query: 547 GKQ--DDIPYWLARNSWGPIGPDEGFFKI 573
                +    ++ +NSWG    D G+ +I
Sbjct: 181 DDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score =  112 bits (283), Expect = 4e-28
 Identities = 57/209 (27%), Positives = 84/209 (40%), Gaps = 17/209 (8%)

Query: 746 WDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQ--- 800
            D R   +T P  +Q + GSCWAF+ A  LE  Y IK G  + V+ S   L  CA     
Sbjct: 2   VDLRPLRLT-PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECL 60

Query: 801 ---CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               S   G      ++     G+  E+DYPY   +  +   +           KD+  +
Sbjct: 61  GINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRV 120

Query: 856 HFNGSETMKKILYKYGPLSV--LLNSDLIHDYNGTPIR--KNDETCSPYDLGHAVLLVGY 911
             N  E +K+ L K GP+     + S       G                 GHAV++VGY
Sbjct: 121 LKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGY 180

Query: 912 GKQ--DNIPYWLVRNSWGPIGPDEGFFKI 938
                +    ++V+NSWG    D G+ +I
Sbjct: 181 DDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 91.5 bits (228), Expect = 7e-21
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAG 1020
            +   CS  +L HAVLLVGYG ++ + YW+V+NSWG    ++G+ +I RG+N CGI   A 
Sbjct: 149  SGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYAS 208

Query: 1021 YA 1022
            Y 
Sbjct: 209  YP 210

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 88.4 bits (220), Expect = 1e-19
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAG 1020
                CS   L HAVL+VGYG ++ +PYW+V+NSWG    + G+F+I RG N CGI   A 
Sbjct: 152  KHTECSGE-LDHAVLIVGYGTENGVPYWIVKNSWGTDWGENGYFRIARGVNECGIASEAS 210

Query: 1021 YAT 1023
            Y  
Sbjct: 211  YPI 213

Length = 213

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 87.1 bits (216), Expect = 5e-19
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 31/225 (13%)

Query: 376 VPDAWDWRKKNVTG-----PAGDQ---AACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ 427
           +P +WDWR  NV G     P  +Q     CGSCWA      L  +  I   +   +    
Sbjct: 1   LPKSWDWR--NVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADR--INIARKGAWPSVY 56

Query: 428 L-VECAKQCSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKS----- 479
           L V+    C+G G C G +     EY H+ G+  E   PY+  +GE        +     
Sbjct: 57  LSVQVVIDCAGGGSCHGGDPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFG 116

Query: 480 ---KVKLFTG---KDFLYFNGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETC 532
               +K +T     D+   +G + M   +Y  GP+S G+ +   +  Y G   ++  +  
Sbjct: 117 ECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDP 176

Query: 533 SPYDLGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG 576
                 H + + G+G  ++ + YW+ RNSWG    + G+F+I   
Sbjct: 177 LI---NHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTS 218

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 30/224 (13%)

Query: 742 VPDAWDWRKKNVTG-----PAGDQ---AACGSCWAFSIAGMLEGQYAIKT---GKLVEFS 790
           +P +WDWR  NV G     P  +Q     CGSCWA      L  +  I        V  S
Sbjct: 1   LPKSWDWR--NVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLS 58

Query: 791 KSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS------ 844
              +++CA   S C G       EY H+ G+  E   PY+  +GE        +      
Sbjct: 59  VQVVIDCAGGGS-CHGGDPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFGE 117

Query: 845 --KVKLFTG---KDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCS 898
              +K +T     D+   +G + M   +Y  GP+S  ++ ++ + +Y G   ++  +   
Sbjct: 118 CFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPL 177

Query: 899 PYDLGHAVLLVGYGKQDN-IPYWLVRNSWGPIGPDEGFFKIERG 941
                H + + G+G  +N + YW+VRNSWG    + G+F+I   
Sbjct: 178 I---NHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTS 218

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 30/224 (13%)

Query: 11  VPDAWDWRKKNVTG-----PAGDQ---ADCGSCWAFSIAGMLEGQYAIKT---GKLVEFS 59
           +P +WDWR  NV G     P  +Q     CGSCWA      L  +  I        V  S
Sbjct: 1   LPKSWDWR--NVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLS 58

Query: 60  KSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS------ 113
              +++CA   S C G       EY H+ G+  E   PY+  +GE        +      
Sbjct: 59  VQVVIDCAGGGS-CHGGDPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFGE 117

Query: 114 --KVKLFTG---KDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCS 167
              +K +T     D+   +G + M   +Y  GP+S  ++ ++ + +Y G   ++  +   
Sbjct: 118 CFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPL 177

Query: 168 PYDLGHAVLLVGYGKQDN-IPYWLVRNSWGPIGPDEGFFKIERG 210
                H + + G+G  +N + YW+VRNSWG    + G+F+I   
Sbjct: 178 I---NHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTS 218

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQ 1017
            +   C    L HAVL+VGYG +  +   YW+V+NSWG    + G+F+I RG NN CGIE 
Sbjct: 110  DHPGCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEA 169

Query: 1018 IAGYA 1022
                 
Sbjct: 170  SVASY 174

Length = 175

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 44/250 (17%)

Query: 741 PVPDAWDWRKKNVTG--------PAGDQAACGSC------WAFSIAGMLEGQYAIKTGKL 786
           P P AW W   +V G        PA     C S        A     M+        G+ 
Sbjct: 204 PPPAAWSWG--DVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQ 261

Query: 787 VEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDY--PYKNANGEKFKCAYDKS 844
              S   +++C++   GC G F E   ++    G+ +   Y  PY + +G +  C   + 
Sbjct: 262 TFLSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRP 321

Query: 845 KVKLF------TGKDFLHFNGSETMKKILYKYGPL--SVLLNSDLI---HDYNGT----- 888
             + +       G  +      + +   +Y++GP+  SV  NSD      +         
Sbjct: 322 SRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVS 381

Query: 889 ----PIRKNDETCSPY---DLGHAVLLVGYGKQDN-IPYWLVRNSWGPIGP--DEGFFKI 938
                    D     Y   ++ H VL++G+G  +N   YWLV + WG      D G  KI
Sbjct: 382 LDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKI 441

Query: 939 ERGNNACGIE 948
            RG NA  IE
Sbjct: 442 ARGVNAYNIE 451

Length = 548

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 85.3 bits (211), Expect = 5e-17
 Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 44/250 (17%)

Query: 10  PVPDAWDWRKKNVTG--------PAGDQADCGSC------WAFSIAGMLEGQYAIKTGKL 55
           P P AW W   +V G        PA     C S        A     M+        G+ 
Sbjct: 204 PPPAAWSWG--DVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQ 261

Query: 56  VEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDY--PYKNANGEKFKCAYDKS 113
              S   +++C++   GC G F E   ++    G+ +   Y  PY + +G +  C   + 
Sbjct: 262 TFLSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRP 321

Query: 114 KVKLF------TGKDFLHFNGSETMKKILYKYGPL--SVLLNSDLI---HDYNGT----- 157
             + +       G  +      + +   +Y++GP+  SV  NSD      +         
Sbjct: 322 SRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVS 381

Query: 158 ----PIRKNDETCSPY---DLGHAVLLVGYGKQDN-IPYWLVRNSWGPIGP--DEGFFKI 207
                    D     Y   ++ H VL++G+G  +N   YWLV + WG      D G  KI
Sbjct: 382 LDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKI 441

Query: 208 ERGNNACGIE 217
            RG NA  IE
Sbjct: 442 ARGVNAYNIE 451

Length = 548

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
            GHAV ++G+G ++ +PYWL  NSWG    + G+F+I RG+N CGIE
Sbjct: 185  GHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIE 230

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 70.3 bits (172), Expect = 3e-12
 Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 47/252 (18%)

Query: 375 PVPDAWDWRKKNVTG--------PAGDQAACGSC------WAFSIAGMLEGQYAIKTGKL 420
           P P AW W   +V G        PA     C S        A     M+        G+ 
Sbjct: 204 PPPAAWSWG--DVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQ 261

Query: 421 VEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDY--PYRNGNGEKFKCAYD 477
              S   +++C++   GC G  G  E+  ++    G+ +   Y  PY +G+G +  C   
Sbjct: 262 TFLSARHVLDCSQYGQGCAG--GFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTR 319

Query: 478 KSKVK-LFTGKDFL--YF---NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDET 531
           +   +  FT    L  Y+      + +   +Y++GP+   + ++   +       ++   
Sbjct: 320 RPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRY 379

Query: 532 CSPYD-----------------LGHAVLLVGYGK-QDDIPYWLARNSWGPIGP--DEGFF 571
            S  D                 + H VL++G+G  ++   YWL  + WG      D G  
Sbjct: 380 VSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTR 439

Query: 572 KIERGNNACGIE 583
           KI RG NA  IE
Sbjct: 440 KIARGVNAYNIE 451

Length = 548

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 56.9 bits (137), Expect = 4e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 972  HAVLLVGYGKQDD----IPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
            HA++LVG+G+++       YW+ RNSWG     EG+FKI RG N  GIE
Sbjct: 620  HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIE 668

Length = 693

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 56.5 bits (136), Expect = 6e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 173 HAVLLVGYGKQDN----IPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 217
           HA++LVG+G+++       YW+ RNSWG     EG+FKI RG N  GIE
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIE 668

Length = 693

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 56.5 bits (136), Expect = 6e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 904 HAVLLVGYGKQDN----IPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 948
           HA++LVG+G+++       YW+ RNSWG     EG+FKI RG N  GIE
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIE 668

Length = 693

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 56.1 bits (135), Expect = 8e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 539 HAVLLVGYGKQDD----IPYWLARNSWGPIGPDEGFFKIERGNNACGIE 583
           HA++LVG+G+++       YW+ RNSWG     EG+FKI RG N  GIE
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIE 668

Length = 693

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 965  CSPYDLGHAVLLVG--YGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGI 1015
            C    L HAVLLVG  Y ++    YW+++NSWG    + G+ ++ER   G + CGI
Sbjct: 382  CGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGI 436

Length = 448

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 959  VKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKI 1006
            +           GHAV++VGY     +    ++V+NSWG    D G+ +I
Sbjct: 160  IVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 49.5 bits (118), Expect = 6e-06
 Identities = 49/220 (22%), Positives = 73/220 (33%), Gaps = 29/220 (13%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P  +D R +    P  DQ   GSCWAF+    LE  Y            +         
Sbjct: 99  LPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLES-YLNPESAWDFSENNMKNLLGVPY 157

Query: 71  S-GCD------GCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF 123
             G D      G     +   T  +G   E D PY   +        +    K       
Sbjct: 158 EKGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPYSENSY---FSPTNLPVTKHVQEAQI 214

Query: 124 L-HFNGS---ETMKKILYKYGPLSVLLNSDLIHDY-NGTPIRKNDETCSPYDLGHAVLLV 178
           +           +K +   YG +S  +  D  +      P    D      + GHAVL+V
Sbjct: 215 IPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSGE---NWGHAVLIV 271

Query: 179 GYG---KQDNIPY-------WLVRNSWGPIGPDEGFFKIE 208
           GY      +N  Y       ++++NSWG    + G+F I 
Sbjct: 272 GYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWIS 311

Length = 372

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 49/220 (22%), Positives = 74/220 (33%), Gaps = 29/220 (13%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P  +D R +    P  DQ + GSCWAF+    LE  Y            +         
Sbjct: 99  LPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLES-YLNPESAWDFSENNMKNLLGVPY 157

Query: 802 S-GCD------GCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF 854
             G D      G     +   T  +G   E D PY   +        +    K       
Sbjct: 158 EKGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPYSENSY---FSPTNLPVTKHVQEAQI 214

Query: 855 L-HFNGS---ETMKKILYKYGPLSVLLNSDLIHDY-NGTPIRKNDETCSPYDLGHAVLLV 909
           +           +K +   YG +S  +  D  +      P    D      + GHAVL+V
Sbjct: 215 IPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSGE---NWGHAVLIV 271

Query: 910 GYG---KQDNIPY-------WLVRNSWGPIGPDEGFFKIE 939
           GY      +N  Y       ++++NSWG    + G+F I 
Sbjct: 272 GYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWIS 311

Length = 372

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 5/41 (12%)

Query: 173 HAVLLVGYGKQDN-----IPYWLVRNSWGPIGPDEGFFKIE 208
           HAV +VGYG   N       YW+VRNSWG    DEG+FK++
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763

Length = 1004

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 5/41 (12%)

Query: 904 HAVLLVGYGKQDN-----IPYWLVRNSWGPIGPDEGFFKIE 939
           HAV +VGYG   N       YW+VRNSWG    DEG+FK++
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763

Length = 1004

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 5/41 (12%)

Query: 972  HAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIE 1007
            HAV +VGYG     + +   YW+VRNSWG    DEG+FK++
Sbjct: 723  HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763

Length = 1004

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 972  HAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERG 1009
            H + + G+G  ++ + YW+VRNSWG    + G+F+I   
Sbjct: 180  HIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTS 218

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 292 FKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHE----RYGTSEFSDRSPEE 339
           F+ +  K G+ Y+++EE   RF  FK+     + H K      + G ++FSD +PEE
Sbjct: 1   FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTPEE 57

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Length = 57

>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHE----RYGTSEFSDRSPEE 705
           F+ +  K G+ Y+++EE   RF  FK+     + H K      + G ++FSD +PEE
Sbjct: 1   FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTPEE 57

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Length = 57

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 46.2 bits (109), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 5/41 (12%)

Query: 539 HAVLLVGYG-----KQDDIPYWLARNSWGPIGPDEGFFKIE 574
           HAV +VGYG     + +   YW+ RNSWG    DEG+FK++
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763

Length = 1004

>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 292 FKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHE----RYGTSEFSDRSPEEI 340
           F+ +  K G+ Y ++EE   RF+ FK+     + H K        G ++F+D + EE 
Sbjct: 1   FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Length = 58

>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 658 FKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHE----RYGTSEFSDRSPEEI 706
           F+ +  K G+ Y ++EE   RF+ FK+     + H K        G ++F+D + EE 
Sbjct: 1   FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Length = 58

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 969  DLGHAVLLVGYGK-QDDIPYWLVRNSWGPIGP--DEGFFKIERGNNACGIE 1016
            ++ H VL++G+G  ++   YWLV + WG      D G  KI RG NA  IE
Sbjct: 401  NVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIE 451

Length = 548

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 46/222 (20%), Positives = 72/222 (32%), Gaps = 32/222 (14%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P  +D R +    P  DQ + GSCWAF+    LE  Y            +         
Sbjct: 99  LPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLES-YLNPESAWDFSENNMKNLLGVPY 157

Query: 436 S------GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF 489
                     G +        T  +G   E D PY   +   +    +    K    ++ 
Sbjct: 158 EKGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPY---SENSYFSPTNLPVTK--HVQEA 212

Query: 490 LYFNG------SETMKKILYKYGPLSVGLNSHLIHFY-NGTPIRKNDETCSPYDLGHAVL 542
                      +  +K +   YG +S  +     +      P    D      + GHAVL
Sbjct: 213 QIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSGE---NWGHAVL 269

Query: 543 LVGYGKQDDIPY----------WLARNSWGPIGPDEGFFKIE 574
           +VGY    DI            ++ +NSWG    + G+F I 
Sbjct: 270 IVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWIS 311

Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1026
KOG1542|consensus	372		100.0
KOG1542|consensus	372		100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
PTZ00021	489	falcipain-2; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
PTZ00021	489	falcipain-2; Provisional	100.0
KOG1543|consensus	325		100.0
KOG1543|consensus	325		100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
smart00645	174	Pept_C1 Papain family cysteine protease.	100.0
smart00645	174	Pept_C1 Papain family cysteine protease.	100.0
PTZ00462	1004	Serine-repeat antigen protein; Provisional	100.0
PTZ00462	1004	Serine-repeat antigen protein; Provisional	100.0
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	100.0
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	100.0
KOG1544|consensus	470		100.0
KOG1544|consensus	470		100.0
COG4870	372	Cysteine protease [Posttranslational modification,	99.95
COG4870	372	Cysteine protease [Posttranslational modification,	99.88
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.76
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.76
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	99.31
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	99.22
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	99.09
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	99.05
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	98.71
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	98.68
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	98.25
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	97.7
KOG4128|consensus	457		95.3
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	95.25
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	94.15
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	93.52
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	91.9

>KOG1542|consensus

Probab=100.00  E-value=2.8e-78  Score=638.65  Aligned_cols=291  Identities=41%  Similarity=0.796  Sum_probs=256.9

Q ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc---------CCCcccccccCCCCCHHHHh-hhcCCCCCccchhhh
Q psy7460         287 NILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH---------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERI  356 (1026)
Q Consensus       287 ~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~---------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~~~~  356 (1026)
                      ...++|..|+.+|+|+|.+.+|..+|+.||+.|+.         .+++.||+|+|||||+|||+ .+++.+........ 
T Consensus        66 ~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~-  144 (372)
T KOG1542|consen   66 GLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPG-  144 (372)
T ss_pred             chHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCcc-
Confidence            34899999999999999999999999999999952         34889999999999999999 66665542111100 


Q ss_pred             hhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCC
Q psy7460         357 VADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS  436 (1026)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~  436 (1026)
                        +...     .+......||++||||++|+||||||||.||||||||+|+++|++++|++|++++|||||||||+..++
T Consensus       145 --~~~~-----~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~  217 (372)
T KOG1542|consen  145 --DAAE-----APIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDN  217 (372)
T ss_pred             --cccc-----CcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCC
Confidence              0000     011345789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCc-hHHHH-HHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEe
Q psy7460         437 GCGGCDGLE-QPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLN  513 (1026)
Q Consensus       437 gC~G~~G~~-~a~~~-~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~  513 (1026)
                      ||+|  |++ +||+| ++.+||..|.+|||+++++.  .|.+++.+.++ .+.+|..++ +|++|.+.|.++|||+|+|+
T Consensus       218 gC~G--Gl~~nA~~~~~~~gGL~~E~dYPY~g~~~~--~C~~~~~~~~v-~I~~f~~l~~nE~~ia~wLv~~GPi~vgiN  292 (372)
T KOG1542|consen  218 GCNG--GLMDNAFKYIKKAGGLEKEKDYPYTGKKGN--QCHFDKSKIVV-SIKDFSMLSNNEDQIAAWLVTFGPLSVGIN  292 (372)
T ss_pred             cCCC--CChhHHHHHHHHhCCccccccCCccccCCC--ccccchhhceE-EEeccEecCCCHHHHHHHHHhcCCeEEEEc
Confidence            9999  999 99999 68899999999999998874  79999887776 556666655 99999999999999999999


Q ss_pred             cCccccccCCceeCCCCCCCCCCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeE
Q psy7460         514 SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-DIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT  590 (1026)
Q Consensus       514 ~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~-g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~  590 (1026)
                      +..+|+|++||+.|....|++..+||||||||||.+. .+||||||||||++|||+||+|+.||.|.|||+++++-+.
T Consensus       293 a~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~  370 (372)
T KOG1542|consen  293 AKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA  370 (372)
T ss_pred             hHHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence            9899999999998777799998899999999999988 8999999999999999999999999999999999987654

>KOG1542|consensus

Probab=100.00  E-value=5.1e-73  Score=598.76  Aligned_cols=290  Identities=40%  Similarity=0.767  Sum_probs=254.5

Q ss_pred             HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh--------h-CCCcccccCcCCCCCHHHHH-hhcCCCCCchhhhhhhh
Q psy7460         655 LETFKAFIVKRGRQYANDEEIKERFEYFKQDG--------H-KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERIVA  724 (1026)
Q Consensus       655 ~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~--------~-~~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~~~~~~  724 (1026)
                      ...|..|+.+|+|+|.+.+|+.+|+.||++|+        . .+++.||+|+|||||+|||+ ++++.+.......   .
T Consensus        68 ~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~---~  144 (372)
T KOG1542|consen   68 EDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLP---G  144 (372)
T ss_pred             HHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCc---c
Confidence            67899999999999999999999999999996        1 23778999999999999999 5665544210000   0


Q ss_pred             hhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCC
Q psy7460         725 DREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC  804 (1026)
Q Consensus       725 ~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC  804 (1026)
                      +.     ...+......||++||||++|+||||||||.||||||||+|+++|++++|++|++++||||+||||+..+.||
T Consensus       145 ~~-----~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC  219 (372)
T KOG1542|consen  145 DA-----AEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGC  219 (372)
T ss_pred             cc-----ccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcC
Confidence            00     0112245678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHH-HHHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCCCC
Q psy7460         805 DGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLI  882 (1026)
Q Consensus       805 ~GG~~~~a~~y-~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~~f  882 (1026)
                      +||.+..||+| ++.+|+..|.+|||+++++.  .|..++....+ .+.+|..++ +|++|.+.|.++|||+|+|++..+
T Consensus       220 ~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~--~C~~~~~~~~v-~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~m  296 (372)
T KOG1542|consen  220 NGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGN--QCHFDKSKIVV-SIKDFSMLSNNEDQIAAWLVTFGPLSVGINAKPM  296 (372)
T ss_pred             CCCChhHHHHHHHHhCCccccccCCccccCCC--ccccchhhceE-EEeccEecCCCHHHHHHHHHhcCCeEEEEchHHH
Confidence            99999999999 57899999999999998874  79988866655 777887654 899999999999999999999999


Q ss_pred             cccCCcceeCCCCCCCCCCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEE
Q psy7460         883 HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT  955 (1026)
Q Consensus       883 ~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~  955 (1026)
                      |+|.+||+.+....|+...+||+|||||||... .++|||||||||+.|||+||+|+.||.|.|||+++++-+.
T Consensus       297 Q~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~  370 (372)
T KOG1542|consen  297 QFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA  370 (372)
T ss_pred             HHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence            999999999866689988899999999999988 8999999999999999999999999999999998876543

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=1.5e-67  Score=591.29  Aligned_cols=294  Identities=31%  Similarity=0.551  Sum_probs=237.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc--------CCCcccccccCCCCCHHHHh-hhcCCCCCccchhhh
Q psy7460         286 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERI  356 (1026)
Q Consensus       286 ~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~--------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~~~~  356 (1026)
                      ..+..+|++|+++|+|.|.+.+|+.+|+.||++|++        ..++++|+|+|+|||+|||+ .+++...........
T Consensus        32 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~  111 (348)
T PTZ00203         32 TPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQH  111 (348)
T ss_pred             cHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCccccccccc
Confidence            356678999999999999998899999999999953        23678899999999999998 555321100000000


Q ss_pred             hhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCC
Q psy7460         357 VADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS  436 (1026)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~  436 (1026)
                       .. ...   ........+||++||||++|+|+||||||.||||||||++++||++++|++++++.||+||||||+..+.
T Consensus       112 -~~-~~~---~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~~~  186 (348)
T PTZ00203        112 -AG-QHY---RKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDN  186 (348)
T ss_pred             -cc-ccc---cccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCCCC
Confidence             00 000   0000122468999999999999999999999999999999999999999999999999999999998778


Q ss_pred             CCCCCCCCc-hHHHHHHh---CCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEE
Q psy7460         437 GCGGCDGLE-QPIEYTHQ---AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVG  511 (1026)
Q Consensus       437 gC~G~~G~~-~a~~~~~~---~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~  511 (1026)
                      ||+|  |.+ .||+|+.+   +||++|++|||.+.++....|...........+..|..+. +++.|+++|+++|||+|+
T Consensus       187 GC~G--G~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~  264 (348)
T PTZ00203        187 GCGG--GLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIA  264 (348)
T ss_pred             CCCC--CCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEE
Confidence            9999  999 99999854   4699999999998776434686433221222456666554 788999999999999999


Q ss_pred             EecCccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeE
Q psy7460         512 LNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT  590 (1026)
Q Consensus       512 i~~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~  590 (1026)
                      |++..|++|++|||.    .|....+||||+|||||+++|++|||||||||++|||+|||||+||.|.|||++.+..+.
T Consensus       265 i~a~~f~~Y~~GIy~----~c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~  339 (348)
T PTZ00203        265 VDASSFMSYHSGVLT----SCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVH  339 (348)
T ss_pred             EEhhhhcCccCceee----ccCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEEe
Confidence            999889999999993    387666899999999999999999999999999999999999999999999996665543

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=3.6e-66  Score=593.67  Aligned_cols=323  Identities=28%  Similarity=0.505  Sum_probs=263.5

Q ss_pred             cCCCchhhhhhhhhcchhhhccCCccCCh---hHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc-------CCCcc
Q psy7460         257 LPSLTDRITDQVVARVDTLAIEGSLTFDN---ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH-------KKHER  326 (1026)
Q Consensus       257 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~-------~~~~~  326 (1026)
                      +|.++...+...++|+.+|+.++.+..+.   .++..+|++|+++|+|.|.+.+|+.+|+.||++|++       ..+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y~  167 (448)
T PTZ00200         88 FPRLDKSKRDSYVDELTRLFKDGYISDDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYS  167 (448)
T ss_pred             CCCcChhHHHHHHHHHHHHhhCCCcCCCccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCeE
Confidence            68888888999999999999999887653   367789999999999999999999999999999963       23578


Q ss_pred             cccccCCCCCHHHHh-hhcCCCCCccch-----hhhh----hhhHHHHH---hh---hcc-cCCCCCCCceeccCCCCCC
Q psy7460         327 YGTSEFSDRSPEEIL-CKTGFKWSERTY-----ERIV----ADREKVEK---ML---MEV-EKDGPVPDAWDWRKKNVTG  389 (1026)
Q Consensus       327 ~g~n~fsD~t~eEf~-~~~~~~~~~~~~-----~~~~----~~~~~~~~---~~---~~~-~~~~~lP~~~DwR~~~~vt  389 (1026)
                      +|+|+|||||+|||. .+++.+.+....     ....    ........   ..   ... .....+|++||||++|.|+
T Consensus       168 lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vt  247 (448)
T PTZ00200        168 KEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVT  247 (448)
T ss_pred             EeccccccCCHHHHHHHhccCCCcccccccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCC
Confidence            899999999999998 566554321100     0000    00000000   00   000 0012369999999999999


Q ss_pred             CCCCCC-CCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCC
Q psy7460         390 PAGDQA-ACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNG  467 (1026)
Q Consensus       390 ~vk~Qg-~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~  467 (1026)
                      |||||| .||||||||+++++|++++|+++.++.||+|||+||+..+.||.|  |.+ .||+|++++||++|++|||++.
T Consensus       248 pVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~~~~GC~G--G~~~~A~~yi~~~Gi~~e~~YPY~~~  325 (448)
T PTZ00200        248 KVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTKSQGCSG--GYPDTALEYVKNKGLSSSSDVPYLAK  325 (448)
T ss_pred             CcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccCccCCCCC--CcHHHHHHHHhhcCccccccCCCCCC
Confidence            999999 999999999999999999999999999999999999987889999  999 9999999999999999999998


Q ss_pred             CCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEe
Q psy7460         468 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGY  546 (1026)
Q Consensus       468 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGy  546 (1026)
                      ++   .|......  .+.+..|..+.+.+.|++++ ..|||+|+|++. .|++|++|||   ++.|+. .+||||+||||
T Consensus       326 ~~---~C~~~~~~--~~~i~~y~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy---~~~C~~-~~nHaV~lVGy  395 (448)
T PTZ00200        326 DG---KCVVSSTK--KVYIDSYLVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVY---NGECGK-SLNHAVLLVGE  395 (448)
T ss_pred             CC---CCcCCCCC--eeEecceEecCHHHHHHHHH-hcCCEEEEeecccccccCCCCcc---ccccCC-CCcEEEEEEEe
Confidence            87   88765432  23467777777666666666 579999999995 7999999999   456875 48999999999


Q ss_pred             ee--cCCccEEEEEcCCCCCCCCCcEEEEEec---CCcccccceeeeeEE
Q psy7460         547 GK--QDDIPYWLARNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI  591 (1026)
Q Consensus       547 G~--~~g~~YWivkNSWG~~WGe~Gy~ri~r~---~n~cgi~~~~~~~~~  591 (1026)
                      |.  ++|++|||||||||++|||+|||||+|+   .|.|||++.+.||++
T Consensus       396 G~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~  445 (448)
T PTZ00200        396 GYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF  445 (448)
T ss_pred             cccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence            95  4689999999999999999999999996   589999999999986

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=3.3e-65  Score=572.28  Aligned_cols=295  Identities=29%  Similarity=0.534  Sum_probs=238.9

Q ss_pred             hhhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----hC---CCcccccCcCCCCCHHHHH-hhcCCCCCchhhhh
Q psy7460         651 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----HK---KHERYGTSEFSDRSPEEIL-CKTGFKWSERTYER  721 (1026)
Q Consensus       651 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~~---~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~~~  721 (1026)
                      ...+...|++||++|+|.|.+.+|+.+|+.||++|+     ++   .+++||+|+|||||+|||. .+++......... 
T Consensus        31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~-  109 (348)
T PTZ00203         31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK-  109 (348)
T ss_pred             ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCccccccc-
Confidence            445667899999999999999889999999999996     22   3568899999999999998 4543211000000 


Q ss_pred             hhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCC
Q psy7460         722 IVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC  801 (1026)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~  801 (1026)
                         .... ...........+||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+
T Consensus       110 ---~~~~-~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~~  185 (348)
T PTZ00203        110 ---QHAG-QHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVD  185 (348)
T ss_pred             ---cccc-ccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCCC
Confidence               0000 000000112236899999999999999999999999999999999999999999999999999999999878


Q ss_pred             CCCCCCCchHHHHHHHH---cCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEE
Q psy7460         802 SGCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLL  877 (1026)
Q Consensus       802 ~gC~GG~~~~a~~y~~~---~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i  877 (1026)
                      .||+||.+..||+|+.+   .|+++|++|||.+.++....|.........+++.+|..+. +++.|+++|+++|||+|+|
T Consensus       186 ~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i  265 (348)
T PTZ00203        186 NGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAV  265 (348)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEE
Confidence            89999999999999864   3689999999998876444686433222223566776654 6889999999999999999


Q ss_pred             eCCCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEE
Q psy7460         878 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA  954 (1026)
Q Consensus       878 ~~~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~  954 (1026)
                      +++.|++|++|||..    |....+||+|+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.+...
T Consensus       266 ~a~~f~~Y~~GIy~~----c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~  338 (348)
T PTZ00203        266 DASSFMSYHSGVLTS----CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSV  338 (348)
T ss_pred             EhhhhcCccCceeec----cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEE
Confidence            998899999999962    7655689999999999988999999999999999999999999999999998655544

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=5.8e-65  Score=584.17  Aligned_cols=303  Identities=30%  Similarity=0.551  Sum_probs=242.6

Q ss_pred             CCccCChhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc---------CCCcccccccCCCCCHHHHh-hhcCCCC
Q psy7460         279 GSLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH---------KKHERYGTSEFSDRSPEEIL-CKTGFKW  348 (1026)
Q Consensus       279 ~~~~~~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~---------~~~~~~g~n~fsD~t~eEf~-~~~~~~~  348 (1026)
                      ..+..++.+....|++|+.+|+|+|.+.+|+.+|+.||++|++         ..++++|+|+|+|||+|||+ .+++.+.
T Consensus       156 ~~~~~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~  235 (489)
T PTZ00021        156 SKFLMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKS  235 (489)
T ss_pred             hhhhccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccc
Confidence            3455666677789999999999999999999999999999953         13578899999999999998 6666542


Q ss_pred             CccchhhhhhhhHH-HHHhhh--cccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCH
Q psy7460         349 SERTYERIVADREK-VEKMLM--EVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSK  425 (1026)
Q Consensus       349 ~~~~~~~~~~~~~~-~~~~~~--~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~  425 (1026)
                      .............. ......  .+.....+|+++|||++|+||||||||.||||||||++++||++++|++++++.||+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSe  315 (489)
T PTZ00021        236 FDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSE  315 (489)
T ss_pred             cccccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCH
Confidence            11000000000000 000000  001111359999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCCCCCCCCc-hHHHHH-HhCCcCCCCCCcccCCC-CCccccccCCCCceeeecceeEecCCHHHHHHHH
Q psy7460         426 SQLVECAKQCSGCGGCDGLE-QPIEYT-HQAGLESEKDYPYRNGN-GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKIL  502 (1026)
Q Consensus       426 q~lvdC~~~~~gC~G~~G~~-~a~~~~-~~~Gi~~e~~ypY~~~~-~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l  502 (1026)
                      ||||||+..+.||.|  |.+ .||+|+ ..+||++|++|||.+.. .   .|....... .+.+.+|..++ +++|+++|
T Consensus       316 QqLVDCs~~n~GC~G--G~~~~Af~yi~~~gGl~tE~~YPY~~~~~~---~C~~~~~~~-~~~i~~y~~i~-~~~lk~al  388 (489)
T PTZ00021        316 QELVDCSFKNNGCYG--GLIPNAFEDMIELGGLCSEDDYPYVSDTPE---LCNIDRCKE-KYKIKSYVSIP-EDKFKEAI  388 (489)
T ss_pred             HHHhhhccCCCCCCC--cchHhhhhhhhhccccCcccccCccCCCCC---ccccccccc-cceeeeEEEec-HHHHHHHH
Confidence            999999987889999  998 999997 45699999999999874 4   687554332 23567777765 67899999


Q ss_pred             HcCCCEEEEEecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCC----------ccEEEEEcCCCCCCCCCcEE
Q psy7460         503 YKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD----------IPYWLARNSWGPIGPDEGFF  571 (1026)
Q Consensus       503 ~~~gPv~v~i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g----------~~YWivkNSWG~~WGe~Gy~  571 (1026)
                      +.+|||+|+|++. .|++|++|||   +..|+. .+||||+|||||++++          .+|||||||||++|||+|||
T Consensus       389 ~~~GPVsv~i~a~~~f~~YkgGIy---~~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~  464 (489)
T PTZ00021        389 RFLGPISVSIAVSDDFAFYKGGIF---DGECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFI  464 (489)
T ss_pred             HhcCCeEEEEEeecccccCCCCcC---CCCCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEE
Confidence            9999999999994 7999999999   456875 4899999999997642          57999999999999999999


Q ss_pred             EEEecC----CcccccceeeeeEEe
Q psy7460         572 KIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       572 ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                      ||+|+.    |+|||++.++||+++
T Consensus       465 rI~r~~~g~~n~CGI~t~a~yP~~~  489 (489)
T PTZ00021        465 RIETDENGLMKTCSLGTEAYVPLIE  489 (489)
T ss_pred             EEEcCCCCCCCCCCCcccceeEecC
Confidence            999996    589999999999864

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=6.3e-64  Score=575.17  Aligned_cols=325  Identities=28%  Similarity=0.500  Sum_probs=263.2

Q ss_pred             cCCCCCcchhhhHHhhhhhhhhcCCCCCChhhH---HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----hC--CCc
Q psy7460         622 CLPSLTDRITDQVVARVDTLAIEGSLTFDNENI---LETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----HK--KHE  691 (1026)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~~--~~~  691 (1026)
                      -+|.+....++..+.+++.|+.++.++.++..+   ...|++|+++|+|.|.+.+|+.+|+.+|++|+     ++  ..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y  166 (448)
T PTZ00200         87 DFPRLDKSKRDSYVDELTRLFKDGYISDDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPY  166 (448)
T ss_pred             cCCCcChhHHHHHHHHHHHHhhCCCcCCCccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCe
Confidence            345666788999999999999999998876544   46799999999999999999999999999996     23  246


Q ss_pred             ccccCcCCCCCHHHHH-hhcCCCCCchhh-----hhhhhhhhhhhh--hhhcc---------cCCCCCCCceecCCCCCC
Q psy7460         692 RYGTSEFSDRSPEEIL-CKTGFKWSERTY-----ERIVADREKVEK--MLMEV---------EKDGPVPDAWDWRKKNVT  754 (1026)
Q Consensus       692 ~~giN~faD~t~eEf~-~~~g~~~~~~~~-----~~~~~~~~~~~~--~~~~~---------~~~~~lP~s~DwR~~g~v  754 (1026)
                      ++|+|+|||||+|||. .+++.+.+....     .....+......  ...+.         .....+|+++|||+.|.|
T Consensus       167 ~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~v  246 (448)
T PTZ00200        167 SKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAV  246 (448)
T ss_pred             EEeccccccCCHHHHHHHhccCCCcccccccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCC
Confidence            7899999999999998 555544321100     000000000000  00000         001236999999999999


Q ss_pred             CCCCCCC-CCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCCCCCCcccCcCCC
Q psy7460         755 GPAGDQA-ACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNAN  833 (1026)
Q Consensus       755 ~pv~dQg-~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~  833 (1026)
                      +|||||| .||||||||+++++|++++|++++.+.||+|+|+||+..+.||+||.+..||+|++++||++|++|||.+.+
T Consensus       247 tpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~  326 (448)
T PTZ00200        247 TKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKD  326 (448)
T ss_pred             CCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhcCccccccCCCCCCC
Confidence            9999999 999999999999999999999999999999999999988899999999999999999999999999999988


Q ss_pred             CCcccccCCCCcceEEecceeeecChHHHHHHHHHhcCCEEEEEeC-CCCcccCCcceeCCCCCCCCCCCCeEEEEEEee
Q psy7460         834 GEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG  912 (1026)
Q Consensus       834 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~-~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg  912 (1026)
                      +   .|......  .+.+..|..+.+.+.|++++ .+|||+|+|++ ..|++|++|||.++   |+.. ++|||+|||||
T Consensus       327 ~---~C~~~~~~--~~~i~~y~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~~~---C~~~-~nHaV~lVGyG  396 (448)
T PTZ00200        327 G---KCVVSSTK--KVYIDSYLVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYNGE---CGKS-LNHAVLLVGEG  396 (448)
T ss_pred             C---CCcCCCCC--eeEecceEecCHHHHHHHHH-hcCCEEEEeecccccccCCCCccccc---cCCC-CcEEEEEEEec
Confidence            7   89765432  23567777777666677666 57999999998 47999999999764   8654 89999999999


Q ss_pred             e--cCCccEEEEEcCCCCCCCCCcEEEEEec---CCccccCCcceEEEE
Q psy7460         913 K--QDNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI  956 (1026)
Q Consensus       913 ~--~~g~~yWivkNSWG~~WGe~Gy~~i~r~---~n~cGi~~~~~~~~~  956 (1026)
                      .  ++|.+|||||||||++|||+|||||+|+   .|.|||++.+.||++
T Consensus       397 ~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~  445 (448)
T PTZ00200        397 YDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF  445 (448)
T ss_pred             ccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence            5  4688999999999999999999999995   589999999999986

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=6.4e-63  Score=567.30  Aligned_cols=294  Identities=30%  Similarity=0.540  Sum_probs=236.4

Q ss_pred             HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----hC----CCcccccCcCCCCCHHHHH-hhcCCCCCchhhhhhhh
Q psy7460         655 LETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----HK----KHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERIVA  724 (1026)
Q Consensus       655 ~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~~----~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~~~~~~  724 (1026)
                      ...|++|+.+|+|+|.+.+|+.+|+.||++|+     ++    .++++|+|+|||||.|||+ .+++.+...........
T Consensus       166 ~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~~  245 (489)
T PTZ00021        166 VNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKS  245 (489)
T ss_pred             HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccccccc
Confidence            46799999999999999999999999999996     22    2467899999999999999 56654321000000000


Q ss_pred             hhhhhhh---hhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCC
Q psy7460         725 DREKVEK---MLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC  801 (1026)
Q Consensus       725 ~~~~~~~---~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~  801 (1026)
                      .......   ..........+|+++|||++|+|+||||||.||||||||++++||++++|++++++.||+|+||||+..+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~~n  325 (489)
T PTZ00021        246 PRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFKN  325 (489)
T ss_pred             cccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhccCC
Confidence            0000000   0000001113599999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCchHHHHHHH-HcCCCCCCcccCcCCC-CCcccccCCCCcceEEecceeeecChHHHHHHHHHhcCCEEEEEeC
Q psy7460         802 SGCDGCFFEPSIEYTH-QAGLESEKDYPYKNAN-GEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS  879 (1026)
Q Consensus       802 ~gC~GG~~~~a~~y~~-~~Gi~~e~~yPY~~~~-~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~  879 (1026)
                      .||+||.+..||+|+. ..||++|++|||.+.. +   .|....+.. .+++.+|..++ +++|+++|+.+|||+|+|++
T Consensus       326 ~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~---~C~~~~~~~-~~~i~~y~~i~-~~~lk~al~~~GPVsv~i~a  400 (489)
T PTZ00021        326 NGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPE---LCNIDRCKE-KYKIKSYVSIP-EDKFKEAIRFLGPISVSIAV  400 (489)
T ss_pred             CCCCCcchHhhhhhhhhccccCcccccCccCCCCC---ccccccccc-cceeeeEEEec-HHHHHHHHHhcCCeEEEEEe
Confidence            9999999999999985 4599999999999864 4   787554332 34677887776 57899999999999999999


Q ss_pred             -CCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCC----------ccEEEEEcCCCCCCCCCcEEEEEecC----Cc
Q psy7460         880 -DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN----------IPYWLVRNSWGPIGPDEGFFKIERGN----NA  944 (1026)
Q Consensus       880 -~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g----------~~yWivkNSWG~~WGe~Gy~~i~r~~----n~  944 (1026)
                       +.|++|++|||...   |+. .++|||+|||||++++          .+|||||||||+.|||+|||||+|+.    |+
T Consensus       401 ~~~f~~YkgGIy~~~---C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~  476 (489)
T PTZ00021        401 SDDFAFYKGGIFDGE---CGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKT  476 (489)
T ss_pred             ecccccCCCCcCCCC---CCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCC
Confidence             57999999999754   864 4899999999997642          47999999999999999999999985    58


Q ss_pred             cccCCcceEEEEe
Q psy7460         945 CGIEQIAGYATID  957 (1026)
Q Consensus       945 cGi~~~~~~~~~~  957 (1026)
                      |||++.+.||.++
T Consensus       477 CGI~t~a~yP~~~  489 (489)
T PTZ00021        477 CSLGTEAYVPLIE  489 (489)
T ss_pred             CCCcccceeEecC
Confidence            9999999999864

>KOG1543|consensus

Probab=100.00  E-value=1.1e-59  Score=524.54  Aligned_cols=275  Identities=35%  Similarity=0.646  Sum_probs=232.7

Q ss_pred             HHHhCCCCCChHHHHHHHHHHHhccc---------CCCcccccccCCCCCHHHHh-hhcCCCCCccchhhhhhhhHHHHH
Q psy7460         296 IVKRGRQYANDEEIKERFEYFKQDGH---------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERIVADREKVEK  365 (1026)
Q Consensus       296 ~~~~~k~Y~~~~E~~~R~~~F~~n~~---------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~~~~~~~~~~~~~  365 (1026)
                      +.+|.+.|.+..|+..|+.+|.+|++         ..++++|+|+|+|+|.|||+ .+++++.+.....       +   
T Consensus        30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~~-------~---   99 (325)
T KOG1543|consen   30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKRD-------K---   99 (325)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccccc-------c---
Confidence            66777888777899999999999942         34567899999999999998 6666654332100       0   


Q ss_pred             hhhcccCCCCCCCceeccCCCCC-CCCCCCCCCcchHHHHhHHHHHHHHHHHcC-CCccCCHHHHHhhhcC-CCCCCCCC
Q psy7460         366 MLMEVEKDGPVPDAWDWRKKNVT-GPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAKQ-CSGCGGCD  442 (1026)
Q Consensus       366 ~~~~~~~~~~lP~~~DwR~~~~v-t~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~-~~~~lS~q~lvdC~~~-~~gC~G~~  442 (1026)
                       ........++|++||||+++.+ +|||||+.||||||||++++||++++|+++ .++.||+||||||+.. +.||+|  
T Consensus       100 -~~~~~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~G--  176 (325)
T KOG1543|consen  100 -FTEKLDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNG--  176 (325)
T ss_pred             -cccccchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCC--
Confidence             0111234579999999999754 559999999999999999999999999999 8999999999999985 789999  


Q ss_pred             CCc-hHHHHHHhCCcCC-CCCCcccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecC-cccc
Q psy7460         443 GLE-QPIEYTHQAGLES-EKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSH-LIHF  519 (1026)
Q Consensus       443 G~~-~a~~~~~~~Gi~~-e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~-~~~~  519 (1026)
                      |.+ .||+|++.+|+.+ +.+|||.+.+.   .|..+.....+.....+..+.+|++|+++|+++|||+|+|++. .|++
T Consensus       177 G~~~~A~~yi~~~G~~t~~~~Ypy~~~~~---~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~  253 (325)
T KOG1543|consen  177 GEPKNAFKYIKKNGGVTECENYPYIGKDG---TCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSL  253 (325)
T ss_pred             CCHHHHHHHHHHhCCCCCCcCCCCcCCCC---CccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhh
Confidence            999 9999998888888 99999999988   9998887555545555556668999999999999999999995 7999


Q ss_pred             ccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeee
Q psy7460         520 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGY  588 (1026)
Q Consensus       520 y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~  588 (1026)
                      |++|||.+.  .|....++|||+|||||+.++++|||||||||+.|||+|||||.|+.|.|+|++.+.|
T Consensus       254 Y~~GVy~~~--~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~  320 (325)
T KOG1543|consen  254 YKGGVYAEE--KGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASY  320 (325)
T ss_pred             ccCceEeCC--CCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhhccccc
Confidence            999999532  3332258999999999996678999999999999999999999999999999999998

>KOG1543|consensus

Probab=100.00  E-value=1.4e-57  Score=507.54  Aligned_cols=276  Identities=35%  Similarity=0.630  Sum_probs=232.2

Q ss_pred             HHHhCCcCCCHHHHHHHHHHHHHhh---h------CCCcccccCcCCCCCHHHHH-hhcCCCCCchhhhhhhhhhhhhhh
Q psy7460         662 IVKRGRQYANDEEIKERFEYFKQDG---H------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERIVADREKVEK  731 (1026)
Q Consensus       662 ~~~~~k~Y~~~~E~~~R~~iF~~N~---~------~~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~~~~~~~~~~~~~  731 (1026)
                      +.+|.+.|.+..|...|+.+|.+|+   .      ..++.+++|+|+|+|.+|++ .+.+.+......           .
T Consensus        30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~-----------~   98 (325)
T KOG1543|consen   30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKR-----------D   98 (325)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccccc-----------c
Confidence            6778888887789999999999995   1      24557899999999999998 555554432200           0


Q ss_pred             hhhcccCCCCCCCceecCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHhcC-CceecCHHHHHhhcCC-CCCCCCCC
Q psy7460         732 MLMEVEKDGPVPDAWDWRKKN-VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAKQ-CSGCDGCF  808 (1026)
Q Consensus       732 ~~~~~~~~~~lP~s~DwR~~g-~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~-~~~~lS~Q~lvdC~~~-~~gC~GG~  808 (1026)
                      .........++|++||||++| .++||||||.||||||||+++|||++++|++| .++.||+|+|+||+.. +.||+||.
T Consensus        99 ~~~~~~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~  178 (325)
T KOG1543|consen   99 KFTEKLDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGE  178 (325)
T ss_pred             ccccccchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCC
Confidence            111222346899999999997 45559999999999999999999999999999 8999999999999984 88999999


Q ss_pred             chHHHHHHHHcCCCC-CCcccCcCCCCCcccccCCCCcceEEecceeeecChHHHHHHHHHhcCCEEEEEeC-CCCcccC
Q psy7460         809 FEPSIEYTHQAGLES-EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS-DLIHDYN  886 (1026)
Q Consensus       809 ~~~a~~y~~~~Gi~~-e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~-~~f~~y~  886 (1026)
                      +..|++|++++|+++ +++|||.+.++   .|..+.....+.....+....++++|+++|+++|||+|+|++ ..|++|+
T Consensus       179 ~~~A~~yi~~~G~~t~~~~Ypy~~~~~---~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~  255 (325)
T KOG1543|consen  179 PKNAFKYIKKNGGVTECENYPYIGKDG---TCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYK  255 (325)
T ss_pred             HHHHHHHHHHhCCCCCCcCCCCcCCCC---CccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhcc
Confidence            999999999988888 99999999998   999887644443333344455799999999999999999998 5799999


Q ss_pred             CcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceE
Q psy7460         887 GTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY  953 (1026)
Q Consensus       887 ~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~  953 (1026)
                      +|||.++.  |....++|||+|||||+.++.+|||||||||+.|||+|||||.|+.+.|+|++.+.|
T Consensus       256 ~GVy~~~~--~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~  320 (325)
T KOG1543|consen  256 GGVYAEEK--GDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASY  320 (325)
T ss_pred             CceEeCCC--CCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhhccccc
Confidence            99999873  332269999999999996678999999999999999999999999999999998887

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=6.7e-52  Score=447.32  Aligned_cols=207  Identities=29%  Similarity=0.601  Sum_probs=181.1

Q ss_pred             CCCceeccCCC---CCCCCCCCC---CCcchHHHHhHHHHHHHHHHHcC---CCccCCHHHHHhhhcCCCCCCCCCCCc-
Q psy7460         376 VPDAWDWRKKN---VTGPAGDQA---ACGSCWAFSIAGMLEGQYAIKTG---KLVEFSKSQLVECAKQCSGCGGCDGLE-  445 (1026)
Q Consensus       376 lP~~~DwR~~~---~vt~vk~Qg---~CgSCwAfa~~~~~e~~~~i~~~---~~~~lS~q~lvdC~~~~~gC~G~~G~~-  445 (1026)
                      ||++||||+++   +|+||||||   .||||||||++++||++++|+++   +.+.||+|+|+||+. +.||.|  |.+ 
T Consensus         1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~G--G~~~   77 (239)
T cd02698           1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHG--GDPG   77 (239)
T ss_pred             CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccC--cCHH
Confidence            69999999988   999999998   89999999999999999999875   367999999999987 789999  999 


Q ss_pred             hHHHHHHhCCcCCCCCCcccCCCCCcccccc---------CC-----CCceeeecceeEecCCHHHHHHHHHcCCCEEEE
Q psy7460         446 QPIEYTHQAGLESEKDYPYRNGNGEKFKCAY---------DK-----SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVG  511 (1026)
Q Consensus       446 ~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~---------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~  511 (1026)
                      .|++|+++.|+++|++|||.+.+.   .|..         ..     .....+.+..|..+.++++||++|+++|||+|+
T Consensus        78 ~a~~~~~~~Gl~~e~~yPY~~~~~---~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~  154 (239)
T cd02698          78 GVYEYAHKHGIPDETCNPYQAKDG---ECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCG  154 (239)
T ss_pred             HHHHHHHHcCcCCCCeeCCcCCCC---CCcCCCCCCCcccCcccccccccceEEeeeceecCCHHHHHHHHHHcCCEEEE
Confidence            999999999999999999998765   3431         10     112334567777777899999999999999999


Q ss_pred             EecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecC-----Ccccccc
Q psy7460         512 LNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-DIPYWLARNSWGPIGPDEGFFKIERGN-----NACGIEQ  584 (1026)
Q Consensus       512 i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~-g~~YWivkNSWG~~WGe~Gy~ri~r~~-----n~cgi~~  584 (1026)
                      |.+. .|++|++|||..  ..|. ..++|||+|||||+++ +++|||||||||++|||+|||||+|+.     |.||||+
T Consensus       155 i~~~~~f~~Y~~GIy~~--~~~~-~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~  231 (239)
T cd02698         155 IMATEALENYTGGVYKE--YVQD-PLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEE  231 (239)
T ss_pred             EEecccccccCCeEEcc--CCCC-CcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCccccccccccc
Confidence            9995 799999999942  2343 4679999999999876 999999999999999999999999999     9999999


Q ss_pred             eeeeeEE
Q psy7460         585 IAGYATI  591 (1026)
Q Consensus       585 ~~~~~~~  591 (1026)
                      .|.|+.|
T Consensus       232 ~~~~~~~  238 (239)
T cd02698         232 DCAWADP  238 (239)
T ss_pred             ceEEEee
Confidence            9999876

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=1e-51  Score=447.86  Aligned_cols=210  Identities=31%  Similarity=0.625  Sum_probs=180.1

Q ss_pred             CCCceeccCCC----CCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCC------CccCCHHHHHhhhcCCCCCCCCCCCc
Q psy7460         376 VPDAWDWRKKN----VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGK------LVEFSKSQLVECAKQCSGCGGCDGLE  445 (1026)
Q Consensus       376 lP~~~DwR~~~----~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~------~~~lS~q~lvdC~~~~~gC~G~~G~~  445 (1026)
                      ||++||||+++    +|+|||||+.||||||||++++||++++|++++      .+.||+|||+||+..+.||+|  |.+
T Consensus         1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~G--G~~   78 (243)
T cd02621           1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDG--GFP   78 (243)
T ss_pred             CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCC--CCH
Confidence            79999999998    999999999999999999999999999999876      789999999999977789999  999


Q ss_pred             -hHHHHHHhCCcCCCCCCcccC-CCCCccccccCC-CCceeeecce------eEecCCHHHHHHHHHcCCCEEEEEecC-
Q psy7460         446 -QPIEYTHQAGLESEKDYPYRN-GNGEKFKCAYDK-SKVKLFTGKD------FLYFNGSETMKKILYKYGPLSVGLNSH-  515 (1026)
Q Consensus       446 -~a~~~~~~~Gi~~e~~ypY~~-~~~~~~~C~~~~-~~~~~~~~~~------~~~~~~~~~~~~~l~~~gPv~v~i~~~-  515 (1026)
                       .|++|+++.||++|++|||.+ ...   .|.... ...+ +.+..      +..+.++++||++|+++|||+|+|++. 
T Consensus        79 ~~a~~~~~~~Gi~~e~~yPY~~~~~~---~C~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~  154 (243)
T cd02621          79 FLVGKFAEDFGIVTEDYFPYTADDDR---PCKASPSECRR-YYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYS  154 (243)
T ss_pred             HHHHHHHHhcCcCCCceeCCCCCCCC---CCCCCcccccc-ccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEecc
Confidence             999999999999999999998 455   687544 2221 12222      333468999999999999999999994 


Q ss_pred             ccccccCCceeCCC--CCCCC--------CCCCeEEEEEEeeecC--CccEEEEEcCCCCCCCCCcEEEEEecCCccccc
Q psy7460         516 LIHFYNGTPIRKND--ETCSP--------YDLGHAVLLVGYGKQD--DIPYWLARNSWGPIGPDEGFFKIERGNNACGIE  583 (1026)
Q Consensus       516 ~~~~y~~Gi~~~~~--~~c~~--------~~~~HaV~iVGyG~~~--g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~  583 (1026)
                      .|++|++|||....  ..|..        ..++|||+|||||+++  +++|||||||||++|||+|||||+|+.|.|||+
T Consensus       155 ~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~  234 (243)
T cd02621         155 DFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIE  234 (243)
T ss_pred             cccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcc
Confidence            79999999995321  12643        2479999999999876  899999999999999999999999999999999


Q ss_pred             ceeeeeEE
Q psy7460         584 QIAGYATI  591 (1026)
Q Consensus       584 ~~~~~~~~  591 (1026)
                      +.+.++.|
T Consensus       235 ~~~~~~~~  242 (243)
T cd02621         235 SQAVFAYP  242 (243)
T ss_pred             cceEeecc
Confidence            99988754

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=7.3e-51  Score=438.41  Aligned_cols=207  Identities=30%  Similarity=0.578  Sum_probs=174.7

Q ss_pred             CCceeccCC--CC--CCCCCCCCCCcchHHHHhHHHHHHHHHHHcC--CCccCCHHHHHhhhcC-CCCCCCCCCCc-hHH
Q psy7460         377 PDAWDWRKK--NV--TGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCGGCDGLE-QPI  448 (1026)
Q Consensus       377 P~~~DwR~~--~~--vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~--~~~~lS~q~lvdC~~~-~~gC~G~~G~~-~a~  448 (1026)
                      |++||||++  ++  |+||||||.||||||||++++||++++|+++  +.+.||+||||||+.. +.||+|  |.+ .|+
T Consensus         1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~G--G~~~~a~   78 (236)
T cd02620           1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNG--GYPDAAW   78 (236)
T ss_pred             CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCC--CCHHHHH
Confidence            899999997  44  4599999999999999999999999999988  7899999999999986 789999  999 999


Q ss_pred             HHHHhCCcCCCCCCcccCCCCCc---------------cccccCCC---CceeeecceeEe-cCCHHHHHHHHHcCCCEE
Q psy7460         449 EYTHQAGLESEKDYPYRNGNGEK---------------FKCAYDKS---KVKLFTGKDFLY-FNGSETMKKILYKYGPLS  509 (1026)
Q Consensus       449 ~~~~~~Gi~~e~~ypY~~~~~~~---------------~~C~~~~~---~~~~~~~~~~~~-~~~~~~~~~~l~~~gPv~  509 (1026)
                      +|+++.|+++|++|||.+.+...               ..|.....   ....+.+..+.. ..++++||++|+++|||+
T Consensus        79 ~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~  158 (236)
T cd02620          79 KYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQ  158 (236)
T ss_pred             HHHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCeE
Confidence            99999999999999998875421               13543321   111223333333 347899999999999999


Q ss_pred             EEEec-CccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeee
Q psy7460         510 VGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGY  588 (1026)
Q Consensus       510 v~i~~-~~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~  588 (1026)
                      |+|++ +.|++|++|||.   ..|+...++|||+|||||++++++|||||||||+.|||+|||||+|+.|+|||++.+..
T Consensus       159 v~i~~~~~f~~Y~~Giy~---~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~  235 (236)
T cd02620         159 AAFTVYEDFLYYKSGVYQ---HTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA  235 (236)
T ss_pred             EEEEechhhhhcCCcEEe---ecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence            99999 589999999994   33655567999999999999999999999999999999999999999999999998753

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=1.6e-50  Score=436.60  Aligned_cols=208  Identities=28%  Similarity=0.589  Sum_probs=182.9

Q ss_pred             CCCceecCCCC---CCCCCCCCC---CCchHHHHHHHHHHHHHHHHhcC---CceecCHHHHHhhcCCCCCCCCCCchHH
Q psy7460         742 VPDAWDWRKKN---VTGPAGDQA---ACGSCWAFSIAGMLEGQYAIKTG---KLVEFSKSQLVECAKQCSGCDGCFFEPS  812 (1026)
Q Consensus       742 lP~s~DwR~~g---~v~pv~dQg---~CGSCWAfa~~~ale~~~~i~~~---~~~~lS~Q~lvdC~~~~~gC~GG~~~~a  812 (1026)
                      ||++||||+++   +|+||||||   .||||||||++++||+++.|+++   +.+.||+|+|+||+. +.||+||++..|
T Consensus         1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a   79 (239)
T cd02698           1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV   79 (239)
T ss_pred             CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence            79999999988   999999998   89999999999999999999875   367899999999987 789999999999


Q ss_pred             HHHHHHcCCCCCCcccCcCCCCCcccccCC----------C----CcceEEecceeeecChHHHHHHHHHhcCCEEEEEe
Q psy7460         813 IEYTHQAGLESEKDYPYKNANGEKFKCAYD----------K----SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN  878 (1026)
Q Consensus       813 ~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~----------~----~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~  878 (1026)
                      ++|++++|+++|++|||...+.   .|...          .    .....+.+..|..+.++++||++|+++|||+++|+
T Consensus        80 ~~~~~~~Gl~~e~~yPY~~~~~---~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i~  156 (239)
T cd02698          80 YEYAHKHGIPDETCNPYQAKDG---ECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIM  156 (239)
T ss_pred             HHHHHHcCcCCCCeeCCcCCCC---CCcCCCCCCCcccCcccccccccceEEeeeceecCCHHHHHHHHHHcCCEEEEEE
Confidence            9999999999999999998765   34310          0    11234567778777889999999999999999999


Q ss_pred             C-CCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecC-----CccccCCcc
Q psy7460         879 S-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-NIPYWLVRNSWGPIGPDEGFFKIERGN-----NACGIEQIA  951 (1026)
Q Consensus       879 ~-~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~Gy~~i~r~~-----n~cGi~~~~  951 (1026)
                      + +.|+.|++|||...  .| ...++|||+|||||+++ +++|||||||||++|||+|||||+|+.     |.||||+.+
T Consensus       157 ~~~~f~~Y~~GIy~~~--~~-~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~  233 (239)
T cd02698         157 ATEALENYTGGVYKEY--VQ-DPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDC  233 (239)
T ss_pred             ecccccccCCeEEccC--CC-CCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccce
Confidence            8 47999999999875  34 35689999999999886 999999999999999999999999999     999999999


Q ss_pred             eEEEE
Q psy7460         952 GYATI  956 (1026)
Q Consensus       952 ~~~~~  956 (1026)
                      +|+..
T Consensus       234 ~~~~~  238 (239)
T cd02698         234 AWADP  238 (239)
T ss_pred             EEEee
Confidence            98753

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=1.5e-50  Score=438.60  Aligned_cols=210  Identities=32%  Similarity=0.634  Sum_probs=180.9

Q ss_pred             CCCceecCCCC----CCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCC------ceecCHHHHHhhcCCCCCCCCCCchH
Q psy7460         742 VPDAWDWRKKN----VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGK------LVEFSKSQLVECAKQCSGCDGCFFEP  811 (1026)
Q Consensus       742 lP~s~DwR~~g----~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~------~~~lS~Q~lvdC~~~~~gC~GG~~~~  811 (1026)
                      ||++||||+++    +|+||||||.||||||||++++||++++|++++      .+.||+|+|+||+..+.||+||.+..
T Consensus         1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~   80 (243)
T cd02621           1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL   80 (243)
T ss_pred             CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence            79999999998    999999999999999999999999999998876      78999999999998788999999999


Q ss_pred             HHHHHHHcCCCCCCcccCcC-CCCCcccccCCCCcceEEeccee------eecChHHHHHHHHHhcCCEEEEEeC-CCCc
Q psy7460         812 SIEYTHQAGLESEKDYPYKN-ANGEKFKCAYDKSKVKLFTGKDF------LHFNGSETMKKILYKYGPLSVLLNS-DLIH  883 (1026)
Q Consensus       812 a~~y~~~~Gi~~e~~yPY~~-~~~~~~~C~~~~~~~~~~~~~~~------~~~~~~~~ik~~l~~~GPV~v~i~~-~~f~  883 (1026)
                      |++|+.+.|+++|++|||.. ...   .|.........+.+..|      ...+++++||++|+++|||+++|++ +.|+
T Consensus        81 a~~~~~~~Gi~~e~~yPY~~~~~~---~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~  157 (243)
T cd02621          81 VGKFAEDFGIVTEDYFPYTADDDR---PCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFD  157 (243)
T ss_pred             HHHHHHhcCcCCCceeCCCCCCCC---CCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEeccccc
Confidence            99999999999999999998 455   78754411111222333      3346799999999999999999998 5799


Q ss_pred             ccCCcceeCCC--CCCCC--------CCCCeEEEEEEeeecC--CccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcc
Q psy7460         884 DYNGTPIRKND--ETCSP--------YDLGHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA  951 (1026)
Q Consensus       884 ~y~~Gi~~~~~--~~c~~--------~~~~HaV~iVGyg~~~--g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~  951 (1026)
                      +|++|||....  ..|+.        ..++|+|+|||||++.  +.+|||||||||++|||+|||||+|+.|.|||++.+
T Consensus       158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~  237 (243)
T cd02621         158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQA  237 (243)
T ss_pred             ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccce
Confidence            99999997652  12532        2579999999999886  899999999999999999999999999999999987


Q ss_pred             eEE
Q psy7460         952 GYA  954 (1026)
Q Consensus       952 ~~~  954 (1026)
                      .++
T Consensus       238 ~~~  240 (243)
T cd02621         238 VFA  240 (243)
T ss_pred             Eee
Confidence            765

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=5.1e-50  Score=468.17  Aligned_cols=217  Identities=27%  Similarity=0.535  Sum_probs=181.4

Q ss_pred             CCCCCCceeccCC----CCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCC-----C-----ccCCHHHHHhhhcCCCCC
Q psy7460         373 DGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGK-----L-----VEFSKSQLVECAKQCSGC  438 (1026)
Q Consensus       373 ~~~lP~~~DwR~~----~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~-----~-----~~lS~q~lvdC~~~~~gC  438 (1026)
                      ..+||++||||++    ++++||+|||.||||||||++++||+|++|++++     .     ..||+|+||||+..+.||
T Consensus       378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC  457 (693)
T PTZ00049        378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGC  457 (693)
T ss_pred             cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCc
Confidence            5689999999984    6799999999999999999999999999998743     2     279999999999878999


Q ss_pred             CCCCCCc-hHHHHHHhCCcCCCCCCcccCCCCCccccccCCCC-------------------------------------
Q psy7460         439 GGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSK-------------------------------------  480 (1026)
Q Consensus       439 ~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~-------------------------------------  480 (1026)
                      +|  |.+ .|++|+++.||++|++|||++..+   .|......                                     
T Consensus       458 ~G--G~~~~A~kya~~~GI~tEscYPY~a~~g---~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (693)
T PTZ00049        458 NG--GFPYLVSKMAKLQGIPLDKVFPYTATEQ---TCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISS  532 (693)
T ss_pred             CC--CcHHHHHHHHHHCCCCcCCccCCcCCCC---CCCCCCCCccccccccccccccccccccccccccccccccccccc
Confidence            99  999 999999999999999999998766   55432110                                     


Q ss_pred             -ceeeecceeEec---------CCHHHHHHHHHcCCCEEEEEecC-ccccccCCceeCCC----CCCCCC----------
Q psy7460         481 -VKLFTGKDFLYF---------NGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKND----ETCSPY----------  535 (1026)
Q Consensus       481 -~~~~~~~~~~~~---------~~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~~~~~----~~c~~~----------  535 (1026)
                       ...+...+|.++         .+++.||++|+++|||+|+|++. .|++|++|||...+    ..|...          
T Consensus       533 ~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~  612 (693)
T PTZ00049        533 EPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNI  612 (693)
T ss_pred             cccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccc
Confidence             011223455554         37899999999999999999995 79999999996321    136421          


Q ss_pred             ----CCCeEEEEEEeeec--CCc--cEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEehh
Q psy7460         536 ----DLGHAVLLVGYGKQ--DDI--PYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVV  594 (1026)
Q Consensus       536 ----~~~HaV~iVGyG~~--~g~--~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~~~  594 (1026)
                          .+||||+|||||++  +|+  +|||||||||+.|||+|||||+||.|.|||++.+.|+.||+.
T Consensus       613 ~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~  679 (693)
T PTZ00049        613 TGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFS  679 (693)
T ss_pred             cccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeeecc
Confidence                46999999999975  464  899999999999999999999999999999999999999853

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=1.2e-49  Score=428.96  Aligned_cols=207  Identities=29%  Similarity=0.575  Sum_probs=176.1

Q ss_pred             CCceecCCC--CC--CCCCCCCCCCchHHHHHHHHHHHHHHHHhcC--CceecCHHHHHhhcCC-CCCCCCCCchHHHHH
Q psy7460         743 PDAWDWRKK--NV--TGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCDGCFFEPSIEY  815 (1026)
Q Consensus       743 P~s~DwR~~--g~--v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~--~~~~lS~Q~lvdC~~~-~~gC~GG~~~~a~~y  815 (1026)
                      |++||||++  ++  |+||+|||.||||||||++++||+++.|+++  +.+.||+|+|+||+.. +.||+||++..||+|
T Consensus         1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~   80 (236)
T cd02620           1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY   80 (236)
T ss_pred             CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence            899999997  44  4599999999999999999999999999887  7899999999999976 789999999999999


Q ss_pred             HHHcCCCCCCcccCcCCCCCc---------------ccccCCCC---cceEEecceeeec-ChHHHHHHHHHhcCCEEEE
Q psy7460         816 THQAGLESEKDYPYKNANGEK---------------FKCAYDKS---KVKLFTGKDFLHF-NGSETMKKILYKYGPLSVL  876 (1026)
Q Consensus       816 ~~~~Gi~~e~~yPY~~~~~~~---------------~~C~~~~~---~~~~~~~~~~~~~-~~~~~ik~~l~~~GPV~v~  876 (1026)
                      ++++|+++|++|||.+.+...               ..|.....   ....+++..+..+ .++++||++|+++|||+++
T Consensus        81 i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~  160 (236)
T cd02620          81 LTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAA  160 (236)
T ss_pred             HHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCeEEE
Confidence            999999999999998865421               13443221   1112233343333 4689999999999999999


Q ss_pred             EeC-CCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcce
Q psy7460         877 LNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAG  952 (1026)
Q Consensus       877 i~~-~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~  952 (1026)
                      |++ +.|+.|++|||...   |+...++|||+|||||++++.+|||||||||+.|||+|||||+|+.|.|||++.++
T Consensus       161 i~~~~~f~~Y~~Giy~~~---~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~  234 (236)
T cd02620         161 FTVYEDFLYYKSGVYQHT---SGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV  234 (236)
T ss_pred             EEechhhhhcCCcEEeec---CCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence            998 68999999999764   55566899999999999999999999999999999999999999999999998765

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=1.1e-48  Score=454.38  Aligned_cols=216  Identities=21%  Similarity=0.459  Sum_probs=178.7

Q ss_pred             CCCCCCceeccCCC---CCCCCCCCCC---CcchHHHHhHHHHHHHHHHHcC------CCccCCHHHHHhhhcCCCCCCC
Q psy7460         373 DGPVPDAWDWRKKN---VTGPAGDQAA---CGSCWAFSIAGMLEGQYAIKTG------KLVEFSKSQLVECAKQCSGCGG  440 (1026)
Q Consensus       373 ~~~lP~~~DwR~~~---~vt~vk~Qg~---CgSCwAfa~~~~~e~~~~i~~~------~~~~lS~q~lvdC~~~~~gC~G  440 (1026)
                      ..+||++||||+++   +|+||||||.   ||||||||++++||++++|+++      ..+.||+|+||||+..+.||+|
T Consensus       202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdG  281 (548)
T PTZ00364        202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAG  281 (548)
T ss_pred             ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCC
Confidence            35799999999987   7899999999   9999999999999999999983      4689999999999977889999


Q ss_pred             CCCCc-hHHHHHHhCCcCCCCCC--cccCCCCCccccccCCCCceee-----eccee-EecCCHHHHHHHHHcCCCEEEE
Q psy7460         441 CDGLE-QPIEYTHQAGLESEKDY--PYRNGNGEKFKCAYDKSKVKLF-----TGKDF-LYFNGSETMKKILYKYGPLSVG  511 (1026)
Q Consensus       441 ~~G~~-~a~~~~~~~Gi~~e~~y--pY~~~~~~~~~C~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~l~~~gPv~v~  511 (1026)
                        |++ .|++|++++||++|++|  ||.+.++....|.......+.+     .+.+| ..+.++++||++|+++|||+|+
T Consensus       282 --G~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVa  359 (548)
T PTZ00364        282 --GFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPAS  359 (548)
T ss_pred             --CcHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEE
Confidence              999 99999999999999999  9988765333587544332211     12222 2345788999999999999999


Q ss_pred             EecC-ccccccCCceeC-----CCC-CCC----------CCCCCeEEEEEEeee-cCCccEEEEEcCCCC--CCCCCcEE
Q psy7460         512 LNSH-LIHFYNGTPIRK-----NDE-TCS----------PYDLGHAVLLVGYGK-QDDIPYWLARNSWGP--IGPDEGFF  571 (1026)
Q Consensus       512 i~~~-~~~~y~~Gi~~~-----~~~-~c~----------~~~~~HaV~iVGyG~-~~g~~YWivkNSWG~--~WGe~Gy~  571 (1026)
                      |++. .|++|++|||..     .+. .|.          ...+||||+|||||+ ++|++|||||||||+  +|||+|||
T Consensus       360 Ida~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYf  439 (548)
T PTZ00364        360 VYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTR  439 (548)
T ss_pred             EEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeE
Confidence            9995 788999998741     111 121          235799999999997 478999999999999  99999999


Q ss_pred             EEEecCCcccccceeeeeE
Q psy7460         572 KIERGNNACGIEQIAGYAT  590 (1026)
Q Consensus       572 ri~r~~n~cgi~~~~~~~~  590 (1026)
                      ||+||.|.||||+.+....
T Consensus       440 RI~RG~N~CGIes~~v~~~  458 (548)
T PTZ00364        440 KIARGVNAYNIESEVVVMY  458 (548)
T ss_pred             EEEcCCCcccccceeeeee
Confidence            9999999999999887433

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=1.9e-48  Score=413.90  Aligned_cols=205  Identities=45%  Similarity=0.912  Sum_probs=183.9

Q ss_pred             CCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC-CCCCCCCCCCc-hHHHHHHhC
Q psy7460         377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       377 P~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~-~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      |++||||+.+.++||+|||.||||||||++++||++++|+++..+.||+|+|++|... +.||.|  |.+ .|+++++..
T Consensus         1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~G--G~~~~a~~~~~~~   78 (210)
T cd02248           1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNG--GNPDNAFEYVKNG   78 (210)
T ss_pred             CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCC--CCHHHhHHHHHHC
Confidence            8899999999999999999999999999999999999999999999999999999976 789999  998 999999999


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC-ccccccCCceeCCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDET  531 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~~~~~~~  531 (1026)
                      |+++|++|||.....   .|....... .+++..|..+.  ++++||++|+++|||+++|.+. .|+.|++|||..  ..
T Consensus        79 Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~--~~  152 (210)
T cd02248          79 GLASESDYPYTGKDG---TCKYNSSKV-GAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSG--PC  152 (210)
T ss_pred             CcCccccCCccCCCC---CccCCCCcc-cEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeC--CC
Confidence            999999999998666   787654423 34667887775  4899999999999999999995 799999999953  34


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeee
Q psy7460         532 CSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYA  589 (1026)
Q Consensus       532 c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~  589 (1026)
                      |.....+|||+|||||++.+++|||||||||+.||++|||||+|+.|.|||++.+.||
T Consensus       153 ~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~  210 (210)
T cd02248         153 CSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP  210 (210)
T ss_pred             CCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence            4345679999999999998999999999999999999999999999999999888775

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=1.6e-48  Score=455.67  Aligned_cols=220  Identities=27%  Similarity=0.516  Sum_probs=184.2

Q ss_pred             CCCCCCCceecCCC----CCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCC-----c-----eecCHHHHHhhcCCCCC
Q psy7460         738 KDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGK-----L-----VEFSKSQLVECAKQCSG  803 (1026)
Q Consensus       738 ~~~~lP~s~DwR~~----g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~-----~-----~~lS~Q~lvdC~~~~~g  803 (1026)
                      ....||++||||+.    ++++||+|||.||||||||++++||++++|++++     .     ..||+|+||||+..++|
T Consensus       377 ~~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqG  456 (693)
T PTZ00049        377 EIDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQG  456 (693)
T ss_pred             ccccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCC
Confidence            35689999999985    6799999999999999999999999999998643     2     27999999999988899


Q ss_pred             CCCCCchHHHHHHHHcCCCCCCcccCcCCCCCcccccCCCCc--------------------------------------
Q psy7460         804 CDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSK--------------------------------------  845 (1026)
Q Consensus       804 C~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~--------------------------------------  845 (1026)
                      |+||.+..|++|+++.||++|++|||.+..+   .|+.....                                      
T Consensus       457 C~GG~~~~A~kya~~~GI~tEscYPY~a~~g---~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (693)
T PTZ00049        457 CNGGFPYLVSKMAKLQGIPLDKVFPYTATEQ---TCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSE  533 (693)
T ss_pred             cCCCcHHHHHHHHHHCCCCcCCccCCcCCCC---CCCCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999998766   56432110                                      


Q ss_pred             ceEEecceeeec---------ChHHHHHHHHHhcCCEEEEEeCC-CCcccCCcceeCCC----CCCCC------------
Q psy7460         846 VKLFTGKDFLHF---------NGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKND----ETCSP------------  899 (1026)
Q Consensus       846 ~~~~~~~~~~~~---------~~~~~ik~~l~~~GPV~v~i~~~-~f~~y~~Gi~~~~~----~~c~~------------  899 (1026)
                      ...+..+.|..+         ++++.||++|+++|||+|+|++. .|++|++|||..++    ..|..            
T Consensus       534 ~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~  613 (693)
T PTZ00049        534 PARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNIT  613 (693)
T ss_pred             ccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCcccccccccccc
Confidence            011233444443         36899999999999999999984 79999999998532    13632            


Q ss_pred             --CCCCeEEEEEEeeec--CCc--cEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEeecC
Q psy7460         900 --YDLGHAVLLVGYGKQ--DNI--PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVK  960 (1026)
Q Consensus       900 --~~~~HaV~iVGyg~~--~g~--~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~~~~  960 (1026)
                        ..++|||+|||||++  +|.  +|||||||||+.|||+|||||+|+.|.|||++.+.|+..++.+
T Consensus       614 G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~r  680 (693)
T PTZ00049        614 GWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFSR  680 (693)
T ss_pred             ccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeeeccc
Confidence              247999999999975  463  7999999999999999999999999999999999999988764

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=5.1e-48  Score=410.57  Aligned_cols=206  Identities=44%  Similarity=0.866  Sum_probs=185.6

Q ss_pred             CCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCC-CCCCCCCCchHHHHHHHHcCC
Q psy7460         743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       743 P~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~-~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      |++||||+.+.++||+|||.||||||||++++||++++++++..+.||+|+|++|... +.||.||.+..|++++++.|+
T Consensus         1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~Gi   80 (210)
T cd02248           1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNGGL   80 (210)
T ss_pred             CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHCCc
Confidence            7899999999999999999999999999999999999999998999999999999976 789999999999999999999


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecCh--HHHHHHHHHhcCCEEEEEeCC-CCcccCCcceeCCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG--SETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCS  898 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~--~~~ik~~l~~~GPV~v~i~~~-~f~~y~~Gi~~~~~~~c~  898 (1026)
                      ++|++|||.....   .|..... ...+++..|..+..  .++||++|+++|||++++.+. .|+.|++|||..+  .|.
T Consensus        81 ~~e~~yPY~~~~~---~C~~~~~-~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~--~~~  154 (210)
T cd02248          81 ASESDYPYTGKDG---TCKYNSS-KVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGP--CCS  154 (210)
T ss_pred             CccccCCccCCCC---CccCCCC-cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCC--CCC
Confidence            9999999998666   7876543 33457778877653  799999999999999999984 7999999999876  343


Q ss_pred             CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEE
Q psy7460         899 PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA  954 (1026)
Q Consensus       899 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~  954 (1026)
                      ...++|||+|||||++.+.+|||||||||+.||++|||||+|++|.|||++.+.||
T Consensus       155 ~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~  210 (210)
T cd02248         155 NTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP  210 (210)
T ss_pred             CCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence            56789999999999998999999999999999999999999999999999776654

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=8.3e-48  Score=447.13  Aligned_cols=218  Identities=21%  Similarity=0.429  Sum_probs=181.6

Q ss_pred             CCCCCCceecCCCC---CCCCCCCCCC---CchHHHHHHHHHHHHHHHHhcC------CceecCHHHHHhhcCCCCCCCC
Q psy7460         739 DGPVPDAWDWRKKN---VTGPAGDQAA---CGSCWAFSIAGMLEGQYAIKTG------KLVEFSKSQLVECAKQCSGCDG  806 (1026)
Q Consensus       739 ~~~lP~s~DwR~~g---~v~pv~dQg~---CGSCWAfa~~~ale~~~~i~~~------~~~~lS~Q~lvdC~~~~~gC~G  806 (1026)
                      ..+||++||||++|   +|+||||||.   ||||||||++++||++++|+++      +.+.||+|+||||+..++||+|
T Consensus       202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdG  281 (548)
T PTZ00364        202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAG  281 (548)
T ss_pred             ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCC
Confidence            46899999999997   7999999999   9999999999999999999873      4688999999999987899999


Q ss_pred             CCchHHHHHHHHcCCCCCCcc--cCcCCCCCcccccCCCCcceE-----Eecceee-ecChHHHHHHHHHhcCCEEEEEe
Q psy7460         807 CFFEPSIEYTHQAGLESEKDY--PYKNANGEKFKCAYDKSKVKL-----FTGKDFL-HFNGSETMKKILYKYGPLSVLLN  878 (1026)
Q Consensus       807 G~~~~a~~y~~~~Gi~~e~~y--PY~~~~~~~~~C~~~~~~~~~-----~~~~~~~-~~~~~~~ik~~l~~~GPV~v~i~  878 (1026)
                      |++..|++|++++||++|++|  ||.+.++....|.......+.     ..+.+|. ..+++++||++|+++|||+|+|+
T Consensus       282 G~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaId  361 (548)
T PTZ00364        282 GFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVY  361 (548)
T ss_pred             CcHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEE
Confidence            999999999999999999999  999876643458754433221     1122232 23578899999999999999999


Q ss_pred             C-CCCcccCCcceeCC-----C-CCC---C-------CCCCCeEEEEEEeee-cCCccEEEEEcCCCC--CCCCCcEEEE
Q psy7460         879 S-DLIHDYNGTPIRKN-----D-ETC---S-------PYDLGHAVLLVGYGK-QDNIPYWLVRNSWGP--IGPDEGFFKI  938 (1026)
Q Consensus       879 ~-~~f~~y~~Gi~~~~-----~-~~c---~-------~~~~~HaV~iVGyg~-~~g~~yWivkNSWG~--~WGe~Gy~~i  938 (1026)
                      + +.|+.|++|||.+.     + ..|   +       ...+||||+|||||+ ++|.+|||||||||+  +|||+|||||
T Consensus       362 a~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI  441 (548)
T PTZ00364        362 ANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKI  441 (548)
T ss_pred             echHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEE
Confidence            8 47889999998521     1 011   1       235799999999997 478999999999999  9999999999


Q ss_pred             EecCCccccCCcceEEEE
Q psy7460         939 ERGNNACGIEQIAGYATI  956 (1026)
Q Consensus       939 ~r~~n~cGi~~~~~~~~~  956 (1026)
                      +||.|.|||++.++....
T Consensus       442 ~RG~N~CGIes~~v~~~~  459 (548)
T PTZ00364        442 ARGVNAYNIESEVVVMYW  459 (548)
T ss_pred             EcCCCcccccceeeeeee
Confidence            999999999999885544

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=2.2e-46  Score=400.32  Aligned_cols=208  Identities=37%  Similarity=0.741  Sum_probs=179.1

Q ss_pred             CCCceeccCC-CCCCCCCCCCCCcchHHHHhHHHHHHHHHHHc-CCCccCCHHHHHhhhc-CCCCCCCCCCCc-hHHHHH
Q psy7460         376 VPDAWDWRKK-NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT-GKLVEFSKSQLVECAK-QCSGCGGCDGLE-QPIEYT  451 (1026)
Q Consensus       376 lP~~~DwR~~-~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~-~~~~~lS~q~lvdC~~-~~~gC~G~~G~~-~a~~~~  451 (1026)
                      ||++||||+. +.++||+||+.||||||||+++++|+++++++ ...+.||+|+|++|.. .+.+|.|  |.+ .|++++
T Consensus         1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~g--g~~~~a~~~~   78 (219)
T PF00112_consen    1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDG--GSPFDALKYI   78 (219)
T ss_dssp             STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBB--BEHHHHHHHH
T ss_pred             CCCCEecccCCCCcCccccCCcccccccchhccceecccccccccccccccccccccccccccccccc--Ccccccceee
Confidence            7999999998 48999999999999999999999999999999 7889999999999997 5689999  888 999999


Q ss_pred             Hh-CCcCCCCCCcccCCC-CCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCce
Q psy7460         452 HQ-AGLESEKDYPYRNGN-GEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPI  525 (1026)
Q Consensus       452 ~~-~Gi~~e~~ypY~~~~-~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~  525 (1026)
                      .+ .|+++|++|||...+ .   .|.........+.+..|..+.  ++++||++|+++|||+++|.+.  .|+.|++|||
T Consensus        79 ~~~~Gi~~e~~~pY~~~~~~---~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~  155 (219)
T PF00112_consen   79 KNNNGIVTEEDYPYNGNENP---TCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIY  155 (219)
T ss_dssp             HHHTSBEBTTTS--SSSSSC---SSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEE
T ss_pred             cccCcccccccccccccccc---cccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceee
Confidence            88 999999999999876 4   787664443334667777665  5899999999999999999984  3999999999


Q ss_pred             eCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCC-cccccceeeeeE
Q psy7460         526 RKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN-ACGIEQIAGYAT  590 (1026)
Q Consensus       526 ~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n-~cgi~~~~~~~~  590 (1026)
                      ..  ..|.+...+|||+|||||++.+++|||||||||+.||++|||||.|+.| +|||++++.||+
T Consensus       156 ~~--~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~  219 (219)
T PF00112_consen  156 DP--PDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI  219 (219)
T ss_dssp             CS--TSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred             ec--cccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence            53  3577667899999999999999999999999999999999999999987 999999999995

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=3.6e-46  Score=398.57  Aligned_cols=209  Identities=37%  Similarity=0.732  Sum_probs=181.6

Q ss_pred             CCCceecCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHhc-CCceecCHHHHHhhcC-CCCCCCCCCchHHHHHHHH
Q psy7460         742 VPDAWDWRKK-NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT-GKLVEFSKSQLVECAK-QCSGCDGCFFEPSIEYTHQ  818 (1026)
Q Consensus       742 lP~s~DwR~~-g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~-~~~~~lS~Q~lvdC~~-~~~gC~GG~~~~a~~y~~~  818 (1026)
                      ||++||||+. +.++||+||+.||||||||++++||++++++. ...+.||+|+|++|.. .+.+|+||.+..|++++++
T Consensus         1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~   80 (219)
T PF00112_consen    1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN   80 (219)
T ss_dssp             STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred             CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence            7999999998 48999999999999999999999999999998 7889999999999997 5789999999999999988


Q ss_pred             -cCCCCCCcccCcCCC-CCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeC-C-CCcccCCcceeC
Q psy7460         819 -AGLESEKDYPYKNAN-GEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNS-D-LIHDYNGTPIRK  892 (1026)
Q Consensus       819 -~Gi~~e~~yPY~~~~-~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~-~-~f~~y~~Gi~~~  892 (1026)
                       +|+++|++|||...+ .   .|.........+++..|..+.  +.++||++|.++|||+++|.+ + .|+.|++|||..
T Consensus        81 ~~Gi~~e~~~pY~~~~~~---~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~  157 (219)
T PF00112_consen   81 NNGIVTEEDYPYNGNENP---TCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDP  157 (219)
T ss_dssp             HTSBEBTTTS--SSSSSC---SSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECS
T ss_pred             cCcccccccccccccccc---cccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeec
Confidence             999999999999876 4   787654443345667776654  489999999999999999998 4 399999999988


Q ss_pred             CCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCC-ccccCCcceEEE
Q psy7460         893 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNN-ACGIEQIAGYAT  955 (1026)
Q Consensus       893 ~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n-~cGi~~~~~~~~  955 (1026)
                      +  .|....++|+|+|||||++.+++|||||||||+.||++|||||+|+.+ +|||++.++||+
T Consensus       158 ~--~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~  219 (219)
T PF00112_consen  158 P--DCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI  219 (219)
T ss_dssp             T--SSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred             c--ccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence            6  576678999999999999999999999999999999999999999987 999999999985

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>smart00645 Pept_C1 Papain family cysteine protease

Probab=100.00  E-value=2.5e-44  Score=369.24  Aligned_cols=165  Identities=47%  Similarity=0.978  Sum_probs=149.5

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC-CCCCCCCCCCc-hHHHHHHh
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLE-QPIEYTHQ  453 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~-~~gC~G~~G~~-~a~~~~~~  453 (1026)
                      ||++||||++++++|||||+.||||||||++++||++++|++++.+.||+|+|++|... +.||.|  |.+ .|++|+.+
T Consensus         1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~G--G~~~~a~~~~~~   78 (174)
T smart00645        1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNG--GLPDNAFEYIKK   78 (174)
T ss_pred             CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCC--cCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999975 669999  999 99999988


Q ss_pred             C-CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCC
Q psy7460         454 A-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETC  532 (1026)
Q Consensus       454 ~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c  532 (1026)
                      . |+++|++|||++                                          ++.+.+..|++|++|||.  ...|
T Consensus        79 ~~Gi~~e~~~PY~~------------------------------------------~~~~~~~~f~~Y~~Gi~~--~~~~  114 (174)
T smart00645       79 NGGLETESCYPYTG------------------------------------------SVAIDASDFQFYKSGIYD--HPGC  114 (174)
T ss_pred             cCCcccccccCccc------------------------------------------EEEEEcccccCCcCeEEC--CCCC
Confidence            7 999999999974                                          566666679999999994  2257


Q ss_pred             CCCCCCeEEEEEEeeec-CCccEEEEEcCCCCCCCCCcEEEEEecC-Cccccccee
Q psy7460         533 SPYDLGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIA  586 (1026)
Q Consensus       533 ~~~~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~  586 (1026)
                      ....++|+|+|||||++ +|++|||||||||+.|||+|||||.|+. |.|||+...
T Consensus       115 ~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~  170 (174)
T smart00645      115 GSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV  170 (174)
T ss_pred             CCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence            65557999999999987 8999999999999999999999999998 999996543

>smart00645 Pept_C1 Papain family cysteine protease

Probab=100.00  E-value=1.7e-43  Score=363.08  Aligned_cols=165  Identities=46%  Similarity=0.939  Sum_probs=151.1

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCC-CCCCCCCCchHHHHHHHHc-
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCDGCFFEPSIEYTHQA-  819 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~-~~gC~GG~~~~a~~y~~~~-  819 (1026)
                      ||++||||+.++++||+||+.||||||||++++||+++++++++.+.||+|+|++|... +.||+||.+..|++|+.++ 
T Consensus         1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~   80 (174)
T smart00645        1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG   80 (174)
T ss_pred             CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence            69999999999999999999999999999999999999999998999999999999975 6799999999999999887 


Q ss_pred             CCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecChHHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCCCC
Q psy7460         820 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP  899 (1026)
Q Consensus       820 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c~~  899 (1026)
                      |+++|++|||..                                          ++.+.+..|++|++|||..+  .|+.
T Consensus        81 Gi~~e~~~PY~~------------------------------------------~~~~~~~~f~~Y~~Gi~~~~--~~~~  116 (174)
T smart00645       81 GLETESCYPYTG------------------------------------------SVAIDASDFQFYKSGIYDHP--GCGS  116 (174)
T ss_pred             CcccccccCccc------------------------------------------EEEEEcccccCCcCeEECCC--CCCC
Confidence            999999999965                                          55666667999999999765  4765


Q ss_pred             CCCCeEEEEEEeeec-CCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCc
Q psy7460         900 YDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQI  950 (1026)
Q Consensus       900 ~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~  950 (1026)
                      ..++|+|+|||||++ ++++|||||||||+.|||+|||||.|+. |.|||+..
T Consensus       117 ~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~  169 (174)
T smart00645      117 GTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEAS  169 (174)
T ss_pred             CcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceee
Confidence            558999999999987 8999999999999999999999999997 99999654

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=100.00  E-value=2.8e-41  Score=404.48  Aligned_cols=202  Identities=22%  Similarity=0.424  Sum_probs=163.0

Q ss_pred             CCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC--CCCCCCCCCCc--hHHHHHHhC-CcCCCCC
Q psy7460         387 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLE--QPIEYTHQA-GLESEKD  461 (1026)
Q Consensus       387 ~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~--~~gC~G~~G~~--~a~~~~~~~-Gi~~e~~  461 (1026)
                      ...||||||.||||||||+++++|++++|+++.++.||+|+|+||+..  +.||.|  |+.  .++.|+++. ||++|++
T Consensus       543 s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~G--G~~~~efl~yI~e~GgLptESd  620 (1004)
T PTZ00462        543 SKIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDE--GSNPLEFLQIIEDNGFLPADSN  620 (1004)
T ss_pred             CCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCC--CCcHHHHHHHHHHcCCCccccc
Confidence            357999999999999999999999999999999999999999999864  579998  765  455888665 5899999


Q ss_pred             CcccC--CCCCccccccCCCC-----------------ceeeecceeEecCC----------HHHHHHHHHcCCCEEEEE
Q psy7460         462 YPYRN--GNGEKFKCAYDKSK-----------------VKLFTGKDFLYFNG----------SETMKKILYKYGPLSVGL  512 (1026)
Q Consensus       462 ypY~~--~~~~~~~C~~~~~~-----------------~~~~~~~~~~~~~~----------~~~~~~~l~~~gPv~v~i  512 (1026)
                      |||.+  ...   .|......                 .....+.+|..+..          ++.|+++|+++|||+|+|
T Consensus       621 YPYt~k~~~g---~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~I  697 (1004)
T PTZ00462        621 YLYNYTKVGE---DCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYI  697 (1004)
T ss_pred             CCCccCCCCC---CCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEE
Confidence            99986  333   57532110                 01112234443321          468999999999999999


Q ss_pred             ecCcccccc-CCceeCCCCCCCCCCCCeEEEEEEeeec-----CCccEEEEEcCCCCCCCCCcEEEEEe-cCCcccccce
Q psy7460         513 NSHLIHFYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNACGIEQI  585 (1026)
Q Consensus       513 ~~~~~~~y~-~Gi~~~~~~~c~~~~~~HaV~iVGyG~~-----~g~~YWivkNSWG~~WGe~Gy~ri~r-~~n~cgi~~~  585 (1026)
                      ++..|++|. +|||.  ...|+...++|||+|||||++     ++++|||||||||+.|||+|||||+| |.|.|||...
T Consensus       698 dAsdf~~Y~~sGIyv--~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i  775 (1004)
T PTZ00462        698 KAENVLGYEFNGKKV--QNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFI  775 (1004)
T ss_pred             EeehHHhhhcCCccc--cCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchh
Confidence            997788884 89875  346886678999999999974     25799999999999999999999998 6899999999


Q ss_pred             eeeeEEehhh
Q psy7460         586 AGYATIDVVI  595 (1026)
Q Consensus       586 ~~~~~~~~~~  595 (1026)
                      ..+|++++.+
T Consensus       776 ~t~~~fn~d~  785 (1004)
T PTZ00462        776 HSVVIFNIDL  785 (1004)
T ss_pred             eeeeeEeecc
Confidence            9999986433

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=100.00  E-value=3.4e-40  Score=395.15  Aligned_cols=200  Identities=24%  Similarity=0.454  Sum_probs=163.7

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCC--CCCCCCCCch-HHHHHHHHc-CCCCCCcccC
Q psy7460         754 TGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFE-PSIEYTHQA-GLESEKDYPY  829 (1026)
Q Consensus       754 v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~--~~gC~GG~~~-~a~~y~~~~-Gi~~e~~yPY  829 (1026)
                      ..||+|||.||||||||++++||++++|++++.+.||+|+|+||+..  +.||.||... .++.|++++ |+++|++|||
T Consensus       544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY  623 (1004)
T PTZ00462        544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY  623 (1004)
T ss_pred             CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence            57999999999999999999999999999999999999999999853  6899999755 455888766 5899999999


Q ss_pred             cC--CCCCcccccCCCC-----------------cceEEecceeeecCh----------HHHHHHHHHhcCCEEEEEeCC
Q psy7460         830 KN--ANGEKFKCAYDKS-----------------KVKLFTGKDFLHFNG----------SETMKKILYKYGPLSVLLNSD  880 (1026)
Q Consensus       830 ~~--~~~~~~~C~~~~~-----------------~~~~~~~~~~~~~~~----------~~~ik~~l~~~GPV~v~i~~~  880 (1026)
                      .+  ..+   .|+....                 ....+...+|..+..          ++.||++|+++|||+|+|+++
T Consensus       624 t~k~~~g---~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs  700 (1004)
T PTZ00462        624 NYTKVGE---DCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE  700 (1004)
T ss_pred             ccCCCCC---CCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee
Confidence            86  334   6764321                 011223345544321          468999999999999999997


Q ss_pred             CCcccC-CcceeCCCCCCCCCCCCeEEEEEEeeec-----CCccEEEEEcCCCCCCCCCcEEEEEe-cCCccccCCcceE
Q psy7460         881 LIHDYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ-----DNIPYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGY  953 (1026)
Q Consensus       881 ~f~~y~-~Gi~~~~~~~c~~~~~~HaV~iVGyg~~-----~g~~yWivkNSWG~~WGe~Gy~~i~r-~~n~cGi~~~~~~  953 (1026)
                      .|+.|. +|||...  .|+...++|||+|||||+.     ++++|||||||||+.|||+|||||+| +.+.|||+....+
T Consensus       701 df~~Y~~sGIyv~~--~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~  778 (1004)
T PTZ00462        701 NVLGYEFNGKKVQN--LCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSV  778 (1004)
T ss_pred             hHHhhhcCCccccC--CCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheee
Confidence            788884 8987664  5876678999999999974     25799999999999999999999998 6899999999999


Q ss_pred             EEEee
Q psy7460         954 ATIDV  958 (1026)
Q Consensus       954 ~~~~~  958 (1026)
                      +++++
T Consensus       779 ~~fn~  783 (1004)
T PTZ00462        779 VIFNI  783 (1004)
T ss_pred             eeEee
Confidence            88874

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=100.00  E-value=3e-39  Score=346.04  Aligned_cols=193  Identities=28%  Similarity=0.399  Sum_probs=163.8

Q ss_pred             ceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcC--CCccCCHHHHHhhhcCC-----CCCCCCCCCc-hHHH-
Q psy7460         379 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQC-----SGCGGCDGLE-QPIE-  449 (1026)
Q Consensus       379 ~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~--~~~~lS~q~lvdC~~~~-----~gC~G~~G~~-~a~~-  449 (1026)
                      ++|||+.+ ++||||||.||+|||||+++++|++++++++  +.+.||+|+|++|....     .||.|  |.+ .++. 
T Consensus         1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~g--G~~~~~~~~   77 (223)
T cd02619           1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDG--GGPLSALLK   77 (223)
T ss_pred             CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCC--CcHHHHHHH
Confidence            48999988 9999999999999999999999999999988  88999999999998752     68999  888 8887 


Q ss_pred             HHHhCCcCCCCCCcccCCCCCccccccC---CCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC-ccccccCC
Q psy7460         450 YTHQAGLESEKDYPYRNGNGEKFKCAYD---KSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH-LIHFYNGT  523 (1026)
Q Consensus       450 ~~~~~Gi~~e~~ypY~~~~~~~~~C~~~---~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~G  523 (1026)
                      +++..||++|++|||.....   .|...   ......+.+..|..+.  ++++||++|+++|||+++|.+. .|..|++|
T Consensus        78 ~~~~~Gi~~e~~~Py~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~  154 (223)
T cd02619          78 LVALKGIPPEEDYPYGAESD---GEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEG  154 (223)
T ss_pred             HHHHcCCCccccCCCCCCCC---CCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCc
Confidence            89999999999999998876   34321   1222234566777665  4789999999999999999984 78899999


Q ss_pred             cee---CCCCCCCCCCCCeEEEEEEeeecC--CccEEEEEcCCCCCCCCCcEEEEEecC
Q psy7460         524 PIR---KNDETCSPYDLGHAVLLVGYGKQD--DIPYWLARNSWGPIGPDEGFFKIERGN  577 (1026)
Q Consensus       524 i~~---~~~~~c~~~~~~HaV~iVGyG~~~--g~~YWivkNSWG~~WGe~Gy~ri~r~~  577 (1026)
                      ++.   .....|.....+|||+|||||++.  +++|||||||||+.||++||+||.++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~  213 (223)
T cd02619         155 IIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED  213 (223)
T ss_pred             cccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence            863   123445566789999999999886  899999999999999999999999984

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=100.00  E-value=8e-39  Score=342.72  Aligned_cols=194  Identities=28%  Similarity=0.383  Sum_probs=165.3

Q ss_pred             ceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcC--CceecCHHHHHhhcCCC-----CCCCCCCchHHHH-HH
Q psy7460         745 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQC-----SGCDGCFFEPSIE-YT  816 (1026)
Q Consensus       745 s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~--~~~~lS~Q~lvdC~~~~-----~gC~GG~~~~a~~-y~  816 (1026)
                      .+|||+.+ ++||+|||.||+|||||+++++|+++.++++  +.+.||+|+|++|....     .||.||.+..++. ++
T Consensus         1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~   79 (223)
T cd02619           1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV   79 (223)
T ss_pred             CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence            48999998 9999999999999999999999999999987  88999999999998642     6999999999998 88


Q ss_pred             HHcCCCCCCcccCcCCCCCcccccCC---CCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeC-CCCcccCCcce
Q psy7460         817 HQAGLESEKDYPYKNANGEKFKCAYD---KSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNS-DLIHDYNGTPI  890 (1026)
Q Consensus       817 ~~~Gi~~e~~yPY~~~~~~~~~C~~~---~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~-~~f~~y~~Gi~  890 (1026)
                      ++.|+++|++|||.....   .|...   ......+++..|..+.  ++++||++|+++|||++++.+ +.|..|++|++
T Consensus        80 ~~~Gi~~e~~~Py~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~  156 (223)
T cd02619          80 ALKGIPPEEDYPYGAESD---GEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGII  156 (223)
T ss_pred             HHcCCCccccCCCCCCCC---CCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccc
Confidence            999999999999998876   44321   1222334666776654  479999999999999999998 57999999987


Q ss_pred             e---CCCCCCCCCCCCeEEEEEEeeecC--CccEEEEEcCCCCCCCCCcEEEEEecC
Q psy7460         891 R---KNDETCSPYDLGHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGN  942 (1026)
Q Consensus       891 ~---~~~~~c~~~~~~HaV~iVGyg~~~--g~~yWivkNSWG~~WGe~Gy~~i~r~~  942 (1026)
                      .   .....|....++|||+|||||++.  +++|||||||||+.||++||+||+++.
T Consensus       157 ~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~  213 (223)
T cd02619         157 YEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED  213 (223)
T ss_pred             cccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence            3   122235566789999999999886  899999999999999999999999974

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>KOG1544|consensus

Probab=100.00  E-value=1.8e-37  Score=321.95  Aligned_cols=216  Identities=25%  Similarity=0.485  Sum_probs=180.1

Q ss_pred             cCCCCCCCCceeCCCC--CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CcccCHHHHHhhcC-CCCCCCCCChH
Q psy7460           5 VEKDGPVPDAWDWRKK--NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGK--LVEFSKSQLVECAK-QCSGCDGCFFE   79 (1026)
Q Consensus         5 ~~~~~~lP~~~Dwr~~--~~~~pV~nQg~cGsCwAfA~~~~le~~~~i~~~~--~~~LS~q~l~~c~~-~~~gC~GG~~~   79 (1026)
                      +++..+||+.|+.|++  +++.|+.|||+|++.|||+++++.++|++|++.+  ...||+|+|++|.. +..||+||.+.
T Consensus       203 l~p~~~LPE~F~As~KWp~liH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lD  282 (470)
T KOG1544|consen  203 LNPGEVLPEAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLD  282 (470)
T ss_pred             cCcccccchhhhhhhcCCccccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCccc
Confidence            5556899999999998  8999999999999999999999999999999865  47799999999975 45899999999


Q ss_pred             HHHHHHHHcCCCCCCCcCCCCCC-CCccc------------------CCCCccc--ceeeccceeeecCcHHHHHHHHHh
Q psy7460          80 PSIEYTHQAGLESEKDYPYKNAN-GEKFK------------------CAYDKSK--VKLFTGKDFLHFNGSETMKKILYK  138 (1026)
Q Consensus        80 ~a~~~~~~~Gv~~e~~~PY~~~~-~~~~~------------------c~~~~~~--~~~~~~~~~~~~~~~~~ik~~I~~  138 (1026)
                      .|+-||.+.|++...||||.... .+.+.                  |+....+  ........|.+.+++++|+++|++
T Consensus       283 RAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~  362 (470)
T KOG1544|consen  283 RAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELME  362 (470)
T ss_pred             chheeeecccccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHh
Confidence            99999999999999999996432 22223                  4433222  222334456677789999999999


Q ss_pred             cCCcEEEEec-ccccccCCceeecCCCCC-----CCCCCCcEEEEEEeeecC-----CccEEEEEcCCCCCCCCCcEEEE
Q psy7460         139 YGPLSVLLNS-DLIHDYNGTPIRKNDETC-----SPYDLGHAVLLVGYGKQD-----NIPYWLVRNSWGPIGPDEGFFKI  207 (1026)
Q Consensus       139 ~GPV~~~i~~-~~~~~y~~gi~~~~~~~~-----~~~~~~HAV~IVGyG~~~-----g~~yWIVrNSWG~~WG~~Gyf~i  207 (1026)
                      +|||.+.|.+ .+|+.|++|||.-.+...     ....+.|+|.|.|||++.     ..+|||..||||+.|||+|||||
T Consensus       363 NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFri  442 (470)
T KOG1544|consen  363 NGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRI  442 (470)
T ss_pred             CCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEE
Confidence            9999999988 788899999998644322     234678999999999763     36999999999999999999999


Q ss_pred             EecCCccccccce
Q psy7460         208 ERGNNACGIEQIA  220 (1026)
Q Consensus       208 ~~g~n~~gie~~~  220 (1026)
                      .||+|+|-||+..
T Consensus       443 LRGvNecdIEsfv  455 (470)
T KOG1544|consen  443 LRGVNECDIESFV  455 (470)
T ss_pred             eccccchhhhHhh
Confidence            9999999999753

>KOG1544|consensus

Probab=100.00  E-value=6.5e-37  Score=317.87  Aligned_cols=248  Identities=24%  Similarity=0.432  Sum_probs=187.6

Q ss_pred             cccCCCCCHHH-HhhhcCCCCCccchhhhhhhhHHHHHhhhcccCCCCCCCceeccCC--CCCCCCCCCCCCcchHHHHh
Q psy7460         329 TSEFSDRSPEE-ILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK--NVTGPAGDQAACGSCWAFSI  405 (1026)
Q Consensus       329 ~n~fsD~t~eE-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~--~~vt~vk~Qg~CgSCwAfa~  405 (1026)
                      ..+|=.||.++ |+..+|.-.++....   ...+.    ........+||+.||-|.+  +.+.++.|||.|++.|||+|
T Consensus       168 YSaFWGmtL~DGiKyRLGTL~Ps~sv~---nMNEi----~~~l~p~~~LPE~F~As~KWp~liH~plDQgnCa~SWafST  240 (470)
T KOG1544|consen  168 YSAFWGMTLDDGIKYRLGTLRPSSSVM---NMNEI----YTVLNPGEVLPEAFEASEKWPNLIHEPLDQGNCAGSWAFST  240 (470)
T ss_pred             hhhhhcccccccceeeecccCchhhhh---hHHhH----hhccCcccccchhhhhhhcCCccccCccccCCcccceeeee
Confidence            34566677666 444455443332221   01111    1111234689999999987  78999999999999999999


Q ss_pred             HHHHHHHHHHHcCC--CccCCHHHHHhhhcC-CCCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCCCCC-ccc-------
Q psy7460         406 AGMLEGQYAIKTGK--LVEFSKSQLVECAKQ-CSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGE-KFK-------  473 (1026)
Q Consensus       406 ~~~~e~~~~i~~~~--~~~lS~q~lvdC~~~-~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~-~~~-------  473 (1026)
                      +++..+|++|.+..  ...||+|+|++|... ..||+|  |.. .|+-|+++.|++...||||...+.. ...       
T Consensus       241 aavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~g--G~lDRAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~  318 (470)
T KOG1544|consen  241 AAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRG--GRLDRAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRA  318 (470)
T ss_pred             ehhccceeEEeeccccccccChHHhcchhhhhhccCcc--CcccchheeeecccccccccccccCCCCCCCCCceeeccc
Confidence            99999999998744  357999999999864 689999  988 9999999999999999999754321 123       


Q ss_pred             -----------cccCCCCc-eeeec-ceeEecCCHHHHHHHHHcCCCEEEEEec-CccccccCCceeCCCCCCC-----C
Q psy7460         474 -----------CAYDKSKV-KLFTG-KDFLYFNGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCS-----P  534 (1026)
Q Consensus       474 -----------C~~~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~gPv~v~i~~-~~~~~y~~Gi~~~~~~~c~-----~  534 (1026)
                                 |.....+. .+|+. ..|...++|++|+++|+++|||-+.+.+ .+|+.|++|||.+.+-.-.     .
T Consensus       319 ~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr  398 (470)
T KOG1544|consen  319 MGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYR  398 (470)
T ss_pred             cCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhh
Confidence                       33332222 23332 3455556999999999999999999999 5799999999976432221     1


Q ss_pred             CCCCeEEEEEEeeecCC-----ccEEEEEcCCCCCCCCCcEEEEEecCCcccccce
Q psy7460         535 YDLGHAVLLVGYGKQDD-----IPYWLARNSWGPIGPDEGFFKIERGNNACGIEQI  585 (1026)
Q Consensus       535 ~~~~HaV~iVGyG~~~g-----~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~  585 (1026)
                      ....|+|.|.|||++.+     .+|||..||||+.|||+|||||.||+|.|.||+.
T Consensus       399 ~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsf  454 (470)
T KOG1544|consen  399 RHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESF  454 (470)
T ss_pred             hcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHh
Confidence            24589999999998743     5799999999999999999999999999999974

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.4e-28  Score=262.01  Aligned_cols=237  Identities=24%  Similarity=0.333  Sum_probs=171.5

Q ss_pred             CCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHH-----HhhcCC-CCC-CCCCCchHH
Q psy7460         740 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQL-----VECAKQ-CSG-CDGCFFEPS  812 (1026)
Q Consensus       740 ~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~l-----vdC~~~-~~g-C~GG~~~~a  812 (1026)
                      ..+|+.||||..|.|+||||||.|||||||+++++||+.+.-..  ...+|+-.+     +-|... ..+ -+||....+
T Consensus        97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~  174 (372)
T COG4870          97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS  174 (372)
T ss_pred             ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence            35899999999999999999999999999999999999886543  334444333     223221 111 247777777


Q ss_pred             HHHH-HHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeee----cChHHHHHHHHHhcCCEEEEEe--CCCCccc
Q psy7460         813 IEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH----FNGSETMKKILYKYGPLSVLLN--SDLIHDY  885 (1026)
Q Consensus       813 ~~y~-~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~----~~~~~~ik~~l~~~GPV~v~i~--~~~f~~y  885 (1026)
                      ..|+ .+.|.+.|.+-||.....   .|+.+....+..+...+..    ..+.-.||+++..+|-++.+|.  +..+...
T Consensus       175 ~a~l~e~sgpv~et~d~y~~~s~---~~~~~~p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~  251 (372)
T COG4870         175 AAYLTEWSGPVYETDDPYSENSY---FSPTNLPVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGI  251 (372)
T ss_pred             cccccccCCcchhhcCccccccc---cCCcCCchhhccccceecccchhhhcccchHHHHhhhccccceeEEeccccccc
Confidence            7886 678999999999988777   6665444333333333332    1235568888888888775544  4333333


Q ss_pred             CCcceeCCCCCCCCCCCCeEEEEEEeeec----------CCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEE
Q psy7460         886 NGTPIRKNDETCSPYDLGHAVLLVGYGKQ----------DNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT  955 (1026)
Q Consensus       886 ~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~----------~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~  955 (1026)
                      .-+.|...    +....+|||+||||++.          .|...||||||||++||++|||||++..-..|-        
T Consensus       252 ~~~~~~~~----s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~g~--------  319 (372)
T COG4870         252 CIPYPYVD----SGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNGD--------  319 (372)
T ss_pred             ccCCCCCC----ccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeeccccc--------
Confidence            33444332    12578999999999864          256799999999999999999999998655551        


Q ss_pred             EeecCCCCccCCCCCCcEEEEEeccCCCCcceeeeecccCCC
Q psy7460         956 IDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI  997 (1026)
Q Consensus       956 ~~~~~~~~~~~~~~~~~~v~~~g~g~~~~~~~w~~~~~~~~~  997 (1026)
                      .+..++++.++||++++||...||+   -.++|. +|+..++
T Consensus       320 a~~~D~y~~i~qydpl~wv~~~~y~---~~~~w~-~n~~~a~  357 (372)
T COG4870         320 AEALDFYVYIYQYDPLGWVITSGYG---LNTAWM-ANSFAAG  357 (372)
T ss_pred             ccccCcceEEeeccCcceEeecCcC---cchhhh-hhhhccc
Confidence            3457799999999999999999999   448886 7877764

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3e-23  Score=224.00  Aligned_cols=204  Identities=23%  Similarity=0.256  Sum_probs=130.5

Q ss_pred             CCCCCCceeCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC---CcccCHHHHHhhcCCC--CCCCCCChHHHH
Q psy7460           8 DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGK---LVEFSKSQLVECAKQC--SGCDGCFFEPSI   82 (1026)
Q Consensus         8 ~~~lP~~~Dwr~~~~~~pV~nQg~cGsCwAfA~~~~le~~~~i~~~~---~~~LS~q~l~~c~~~~--~gC~GG~~~~a~   82 (1026)
                      ...||..||||..+-|+||||||.||+||||+++++||+.+.-....   ...+..+..+.|.+..  ..-+||....+.
T Consensus        96 ~~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~  175 (372)
T COG4870          96 SASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPESAWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA  175 (372)
T ss_pred             cccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccccccccccchhhhcCCCccccCCCccccCCcccccc
Confidence            34599999999999999999999999999999999999988543311   1223333333333211  112366666555


Q ss_pred             HHHHHc-CCCCCCCcCCCCCCCCcccCCCCccc-ceeeccceeeecCcHHHHHHHHHhcCCcEEEEecc--cccccCCce
Q psy7460          83 EYTHQA-GLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD--LIHDYNGTP  158 (1026)
Q Consensus        83 ~~~~~~-Gv~~e~~~PY~~~~~~~~~c~~~~~~-~~~~~~~~~~~~~~~~~ik~~I~~~GPV~~~i~~~--~~~~y~~gi  158 (1026)
                      .++.+- |.+.+.+-||.....-.+.|.+.... ............-+.-.||+++...|.+...|..+  .+....-+.
T Consensus       176 a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~  255 (372)
T COG4870         176 AYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPY  255 (372)
T ss_pred             ccccccCCcchhhcCccccccccCCcCCchhhccccceecccchhhhcccchHHHHhhhccccceeEEecccccccccCC
Confidence            555444 78888888888766533333222111 01111111111123446889998899987665543  222222222


Q ss_pred             eecCCCCCCCCCCCcEEEEEEeeecC----------CccEEEEEcCCCCCCCCCcEEEEEecCCccc
Q psy7460         159 IRKNDETCSPYDLGHAVLLVGYGKQD----------NIPYWLVRNSWGPIGPDEGFFKIERGNNACG  215 (1026)
Q Consensus       159 ~~~~~~~~~~~~~~HAV~IVGyG~~~----------g~~yWIVrNSWG~~WG~~Gyf~i~~g~n~~g  215 (1026)
                      +.    .......+|||+||||++..          |.+.||||||||++||++|||||.+..-..|
T Consensus       256 ~~----~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~g  318 (372)
T COG4870         256 PY----VDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNG  318 (372)
T ss_pred             CC----CCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecccc
Confidence            22    11225689999999998642          3579999999999999999999999765555

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.76  E-value=5e-18  Score=194.72  Aligned_cols=185  Identities=24%  Similarity=0.322  Sum_probs=127.9

Q ss_pred             CCCCCCCCCcchHHHHhHHHHHHHHHHH-cCCCccCCHHHHHh----------------hhc------------CCCCCC
Q psy7460         389 GPAGDQAACGSCWAFSIAGMLEGQYAIK-TGKLVEFSKSQLVE----------------CAK------------QCSGCG  439 (1026)
Q Consensus       389 t~vk~Qg~CgSCwAfa~~~~~e~~~~i~-~~~~~~lS~q~lvd----------------C~~------------~~~gC~  439 (1026)
                      .||+||+.-|-||.||+...|+..+..+ ..+.++||+..|.-                +..            ...-.+
T Consensus        55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D  134 (437)
T cd00585          55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND  134 (437)
T ss_pred             CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence            4899999999999999999999987764 55679999876654                221            133456


Q ss_pred             CCCCCc-hHHHHHHhCCcCCCCCCcccCC--C-------------------------CC--------cc-----------
Q psy7460         440 GCDGLE-QPIEYTHQAGLESEKDYPYRNG--N-------------------------GE--------KF-----------  472 (1026)
Q Consensus       440 G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~--~-------------------------~~--------~~-----------  472 (1026)
                      |  |.. .+...++++|++..+.||=+..  +                         +.        ..           
T Consensus       135 G--Gqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~  212 (437)
T cd00585         135 G--GQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILA  212 (437)
T ss_pred             C--CchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            6  666 8888899999999999984311  0                         00        00           


Q ss_pred             cc-------------------------------------cc--------CCC----Cceeeecc-----------eeEec
Q psy7460         473 KC-------------------------------------AY--------DKS----KVKLFTGK-----------DFLYF  492 (1026)
Q Consensus       473 ~C-------------------------------------~~--------~~~----~~~~~~~~-----------~~~~~  492 (1026)
                      .|                                     ..        ++.    -.+.|.+.           .|..+
T Consensus       213 ~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nv  292 (437)
T cd00585         213 IALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNV  292 (437)
T ss_pred             HHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEec
Confidence            00                                     00        000    00000000           11111


Q ss_pred             CCHHHHH----HHHHcCCCEEEEEecCccccccCCceeCCCC------------------CCCCCCCCeEEEEEEeeec-
Q psy7460         493 NGSETMK----KILYKYGPLSVGLNSHLIHFYNGTPIRKNDE------------------TCSPYDLGHAVLLVGYGKQ-  549 (1026)
Q Consensus       493 ~~~~~~~----~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~------------------~c~~~~~~HaV~iVGyG~~-  549 (1026)
                       ..+.|+    ++|.+++||.+++++..++.|++||+.....                  .|.....+|||+|||||.+ 
T Consensus       293 -p~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~  371 (437)
T cd00585         293 -PMDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDE  371 (437)
T ss_pred             -CHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecC
Confidence             345555    6778889999999998888999999932110                  1444457999999999985 


Q ss_pred             CCc-cEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         550 DDI-PYWLARNSWGPIGPDEGFFKIERG  576 (1026)
Q Consensus       550 ~g~-~YWivkNSWG~~WGe~Gy~ri~r~  576 (1026)
                      +|+ .||+||||||+.||++|||+|.++
T Consensus       372 ~g~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         372 DGKPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             CCCcceEEEEcccCCCCCCCcceehhHH
Confidence            476 699999999999999999999886

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.76  E-value=5e-18  Score=194.66  Aligned_cols=186  Identities=22%  Similarity=0.287  Sum_probs=131.8

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHh-cCCceecCHHHHHh----------------hcC------------CCCCCC
Q psy7460         755 GPAGDQAACGSCWAFSIAGMLEGQYAIK-TGKLVEFSKSQLVE----------------CAK------------QCSGCD  805 (1026)
Q Consensus       755 ~pv~dQg~CGSCWAfa~~~ale~~~~i~-~~~~~~lS~Q~lvd----------------C~~------------~~~gC~  805 (1026)
                      .||+||+.-|-||.||+...|+..+..+ +.+.+.||+.+|.-                +..            ...-.+
T Consensus        55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D  134 (437)
T cd00585          55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND  134 (437)
T ss_pred             CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence            3899999999999999999999988764 55689999877654                210            134578


Q ss_pred             CCCchHHHHHHHHcCCCCCCcccCcCCCCC-------------------------c---------c------------cc
Q psy7460         806 GCFFEPSIEYTHQAGLESEKDYPYKNANGE-------------------------K---------F------------KC  839 (1026)
Q Consensus       806 GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~-------------------------~---------~------------~C  839 (1026)
                      ||.-..+...++++|++.++.||-+.....                         .         .            .|
T Consensus       135 GGqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~~  214 (437)
T cd00585         135 GGQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAIA  214 (437)
T ss_pred             CCchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999985421100                         0         0            00


Q ss_pred             cC-CC--------------------------------------------C----cceEEec-----------ceeeecCh
Q psy7460         840 AY-DK--------------------------------------------S----KVKLFTG-----------KDFLHFNG  859 (1026)
Q Consensus       840 ~~-~~--------------------------------------------~----~~~~~~~-----------~~~~~~~~  859 (1026)
                      -- .+                                            .    ..+.|.+           ..|..+ .
T Consensus       215 lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nv-p  293 (437)
T cd00585         215 LGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNV-P  293 (437)
T ss_pred             cCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEec-C
Confidence            00 00                                            0    0000000           011111 1


Q ss_pred             HHHHH----HHHHhcCCEEEEEeCCCCcccCCcceeCCCC------------------CCCCCCCCeEEEEEEeeecC-C
Q psy7460         860 SETMK----KILYKYGPLSVLLNSDLIHDYNGTPIRKNDE------------------TCSPYDLGHAVLLVGYGKQD-N  916 (1026)
Q Consensus       860 ~~~ik----~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~------------------~c~~~~~~HaV~iVGyg~~~-g  916 (1026)
                      .+.|+    ++|..++||.++++++.|..|++||+.....                  .|.....+|||+|||||.+. |
T Consensus       294 ~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g  373 (437)
T cd00585         294 MDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDG  373 (437)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCC
Confidence            34555    6778889999999998888999999954310                  13344679999999999754 7


Q ss_pred             c-cEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         917 I-PYWLVRNSWGPIGPDEGFFKIERG  941 (1026)
Q Consensus       917 ~-~yWivkNSWG~~WGe~Gy~~i~r~  941 (1026)
                      + .||+||||||+.||++|||+|+++
T Consensus       374 ~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         374 KPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             CcceEEEEcccCCCCCCCcceehhHH
Confidence            6 699999999999999999999875

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.31  E-value=1.4e-11  Score=141.96  Aligned_cols=186  Identities=22%  Similarity=0.317  Sum_probs=110.7

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCcccCHHHHHhh----------------cCC------------CCCCC
Q psy7460          24 GPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVEC----------------AKQ------------CSGCD   74 (1026)
Q Consensus        24 ~pV~nQg~cGsCwAfA~~~~le~~~~i~~~-~~~~LS~q~l~~c----------------~~~------------~~gC~   74 (1026)
                      .||.||..-|-||.||+...|+..+..+.+ +.++||.-+|.--                ...            ....+
T Consensus        56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D  135 (438)
T PF03051_consen   56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD  135 (438)
T ss_dssp             -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred             CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence            499999999999999999999999988776 6799999987521                110            13468


Q ss_pred             CCChHHHHHHHHHcCCCCCCCcCCCCCCCCc--------------------------c----------------------
Q psy7460          75 GCFFEPSIEYTHQAGLESEKDYPYKNANGEK--------------------------F----------------------  106 (1026)
Q Consensus        75 GG~~~~a~~~~~~~Gv~~e~~~PY~~~~~~~--------------------------~----------------------  106 (1026)
                      ||.-..+...++++||++.+.||-+......                          .                      
T Consensus       136 GGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~~  215 (438)
T PF03051_consen  136 GGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAIY  215 (438)
T ss_dssp             -B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999975422100                          0                      


Q ss_pred             --cCC--CC-----c--------------------------------------ccceeecccee---------eecC-cH
Q psy7460         107 --KCA--YD-----K--------------------------------------SKVKLFTGKDF---------LHFN-GS  129 (1026)
Q Consensus       107 --~c~--~~-----~--------------------------------------~~~~~~~~~~~---------~~~~-~~  129 (1026)
                        .+|  ..     +                                      ...+.+.....         .+.+ ..
T Consensus       216 lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvpi  295 (438)
T PF03051_consen  216 LGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVPI  295 (438)
T ss_dssp             H---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--H
T ss_pred             cCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccCH
Confidence              000  00     0                                      00000100000         0000 12


Q ss_pred             ----HHHHHHHHhcCCcEEEEecccccccCCceeecCCCC------------------CCCCCCCcEEEEEEeee-cCCc
Q psy7460         130 ----ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET------------------CSPYDLGHAVLLVGYGK-QDNI  186 (1026)
Q Consensus       130 ----~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~------------------~~~~~~~HAV~IVGyG~-~~g~  186 (1026)
                          +.+.+.|.++-||-.+-++..+.+.+.|+.......                  ......+|||+|+|... ++|+
T Consensus       296 d~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~  375 (438)
T PF03051_consen  296 DELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGK  375 (438)
T ss_dssp             HHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSS
T ss_pred             HHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCC
Confidence                456668888999999999866666677776532100                  12234679999999997 5665


Q ss_pred             -cEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         187 -PYWLVRNSWGPIGPDEGFFKIER  209 (1026)
Q Consensus       187 -~yWIVrNSWG~~WG~~Gyf~i~~  209 (1026)
                       .+|+|+||||+..|.+|||.|..
T Consensus       376 p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  376 PVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             EEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             eeEEEEEcCCCCCCCCCcEEEECH
Confidence             69999999999999999999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.22  E-value=5.6e-11  Score=136.99  Aligned_cols=186  Identities=22%  Similarity=0.343  Sum_probs=109.6

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHhcC-CceecCHHHHH----------------hhcC------------CCCCCC
Q psy7460         755 GPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLV----------------ECAK------------QCSGCD  805 (1026)
Q Consensus       755 ~pv~dQg~CGSCWAfa~~~ale~~~~i~~~-~~~~lS~Q~lv----------------dC~~------------~~~gC~  805 (1026)
                      .||.||..-|-||.||+...|+..+..+.+ +...||+-+|.                ++..            ...-.+
T Consensus        56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D  135 (438)
T PF03051_consen   56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD  135 (438)
T ss_dssp             -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred             CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence            399999999999999999999999987765 67999998765                3221            023468


Q ss_pred             CCCchHHHHHHHHcCCCCCCcccCcCCCCCcc------------------------------------------------
Q psy7460         806 GCFFEPSIEYTHQAGLESEKDYPYKNANGEKF------------------------------------------------  837 (1026)
Q Consensus       806 GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~------------------------------------------------  837 (1026)
                      ||.-..+..-++++||+..+.||-+.....+.                                                
T Consensus       136 GGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~~  215 (438)
T PF03051_consen  136 GGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAIY  215 (438)
T ss_dssp             -B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888889999999999998643211000                                                


Q ss_pred             --ccc-------------------------------CCC--------------CcceEEecc-----------eeeecCh
Q psy7460         838 --KCA-------------------------------YDK--------------SKVKLFTGK-----------DFLHFNG  859 (1026)
Q Consensus       838 --~C~-------------------------------~~~--------------~~~~~~~~~-----------~~~~~~~  859 (1026)
                        .++                               .+.              ...+.+.+.           .|..++-
T Consensus       216 lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvpi  295 (438)
T PF03051_consen  216 LGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVPI  295 (438)
T ss_dssp             H---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--H
T ss_pred             cCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccCH
Confidence              000                               000              000000000           0111110


Q ss_pred             ---HHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCC------------------CCCCCCCeEEEEEEeee-cCCc
Q psy7460         860 ---SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET------------------CSPYDLGHAVLLVGYGK-QDNI  917 (1026)
Q Consensus       860 ---~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~------------------c~~~~~~HaV~iVGyg~-~~g~  917 (1026)
                         .+.+.++|..+-||-.+-+++.+...+.||.......                  ......+|||+|||... ++|+
T Consensus       296 d~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~  375 (438)
T PF03051_consen  296 DELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGK  375 (438)
T ss_dssp             HHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSS
T ss_pred             HHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCC
Confidence               2455567777779999999987777788887543100                  01134589999999997 5665


Q ss_pred             -cEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         918 -PYWLVRNSWGPIGPDEGFFKIER  940 (1026)
Q Consensus       918 -~yWivkNSWG~~WGe~Gy~~i~r  940 (1026)
                       .+|+|+||||+..|.+|||.|+.
T Consensus       376 p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  376 PVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             EEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             eeEEEEEcCCCCCCCCCcEEEECH
Confidence             59999999999999999999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.09  E-value=1.1e-10  Score=97.11  Aligned_cols=49  Identities=37%  Similarity=0.644  Sum_probs=41.1

Q ss_pred             HHHHHHHhCCCCCChHHHHHHHHHHHhccc---------CCCcccccccCCCCCHHHH
Q psy7460         292 FKAFIVKRGRQYANDEEIKERFEYFKQDGH---------KKHERYGTSEFSDRSPEEI  340 (1026)
Q Consensus       292 f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~---------~~~~~~g~n~fsD~t~eEf  340 (1026)
                      |++|+++|+|.|.+.+|+..|+.+|++|++         ..++++|+|+|||||++||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence            899999999999999999999999999953         4567889999999999998

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.05  E-value=2.5e-10  Score=95.00  Aligned_cols=49  Identities=39%  Similarity=0.680  Sum_probs=40.3

Q ss_pred             HHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h----CCCcccccCcCCCCCHHHH
Q psy7460         658 FKAFIVKRGRQYANDEEIKERFEYFKQDG-----H----KKHERYGTSEFSDRSPEEI  706 (1026)
Q Consensus       658 f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~----~~~~~~giN~faD~t~eEf  706 (1026)
                      |++|+++|+|.|.+.+|+..|+.+|++|+     +    ..++++|||+|||||++||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence            88999999999999999999999999996     1    2356789999999999997

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=98.71  E-value=8.2e-09  Score=85.53  Aligned_cols=48  Identities=33%  Similarity=0.578  Sum_probs=43.0

Q ss_pred             HHHHHHHhCCCCCChHHHHHHHHHHHhccc---------CCCcccccccCCCCCHHH
Q psy7460         292 FKAFIVKRGRQYANDEEIKERFEYFKQDGH---------KKHERYGTSEFSDRSPEE  339 (1026)
Q Consensus       292 f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~---------~~~~~~g~n~fsD~t~eE  339 (1026)
                      |++|+.+|+|.|.+.+|...|+.+|++|++         ..++++|+|+|||||++|
T Consensus         1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE   57 (57)
T smart00848        1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE   57 (57)
T ss_pred             ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence            688999999999999999999999999953         246788999999999886

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=98.68  E-value=1.3e-08  Score=84.28  Aligned_cols=48  Identities=35%  Similarity=0.616  Sum_probs=42.3

Q ss_pred             HHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h----CCCcccccCcCCCCCHHH
Q psy7460         658 FKAFIVKRGRQYANDEEIKERFEYFKQDG-----H----KKHERYGTSEFSDRSPEE  705 (1026)
Q Consensus       658 f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~----~~~~~~giN~faD~t~eE  705 (1026)
                      |++|+.+|+|.|.+..|+..|+.+|++|+     +    ..++++|+|+|||||++|
T Consensus         1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE   57 (57)
T smart00848        1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE   57 (57)
T ss_pred             ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence            67899999999999999999999999996     1    145678999999999886

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=98.25  E-value=5.8e-06  Score=88.88  Aligned_cols=76  Identities=17%  Similarity=0.276  Sum_probs=56.1

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCcccCHHHHHhhcC----------------------------CCCCCCC
Q psy7460          25 PAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAK----------------------------QCSGCDG   75 (1026)
Q Consensus        25 pV~nQg~cGsCwAfA~~~~le~~~~i~~~-~~~~LS~q~l~~c~~----------------------------~~~gC~G   75 (1026)
                      ||-||..-|-||-||+.-++--.+.-.-+ +.+.||..++.--++                            ...--+|
T Consensus        59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDG  138 (444)
T COG3579          59 KVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDG  138 (444)
T ss_pred             ccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccC
Confidence            89999999999999998877655543333 457888776532221                            0123468


Q ss_pred             CChHHHHHHHHHcCCCCCCCcCCCC
Q psy7460          76 CFFEPSIEYTHQAGLESEKDYPYKN  100 (1026)
Q Consensus        76 G~~~~a~~~~~~~Gv~~e~~~PY~~  100 (1026)
                      |--......+.++|+++-++||-..
T Consensus       139 GQwdM~v~l~eKYGvVpK~~ypes~  163 (444)
T COG3579         139 GQWDMFVSLFEKYGVVPKSVYPESF  163 (444)
T ss_pred             chHHHHHHHHHHhCCCchhhccccc
Confidence            8888888889999999999998653

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=97.70  E-value=0.00017  Score=77.89  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=50.1

Q ss_pred             HHhcCCEEEEEeCCCCcccCCcceeCCCC------------------CCCCCCCCeEEEEEEeeec-CC-ccEEEEEcCC
Q psy7460         867 LYKYGPLSVLLNSDLIHDYNGTPIRKNDE------------------TCSPYDLGHAVLLVGYGKQ-DN-IPYWLVRNSW  926 (1026)
Q Consensus       867 l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~------------------~c~~~~~~HaV~iVGyg~~-~g-~~yWivkNSW  926 (1026)
                      +..+-||=.+-++..+..-+.||..-.--                  ..+.....|||+|.|.+.+ +| .-=|.|.|||
T Consensus       308 ~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~p~rwkVENSW  387 (444)
T COG3579         308 MQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGNPLRWKVENSW  387 (444)
T ss_pred             HhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCCceeeEeeccc
Confidence            33445777777776666666666432100                  0011235699999999854 33 3479999999


Q ss_pred             CCCCCCCcEEEEEe
Q psy7460         927 GPIGPDEGFFKIER  940 (1026)
Q Consensus       927 G~~WGe~Gy~~i~r  940 (1026)
                      |..=|.+|||-++-
T Consensus       388 G~d~G~~GyfvaSd  401 (444)
T COG3579         388 GKDVGKKGYFVASD  401 (444)
T ss_pred             ccccCCCceEeehH
Confidence            99999999998763

>KOG4128|consensus

Probab=95.30  E-value=0.016  Score=62.95  Aligned_cols=76  Identities=21%  Similarity=0.286  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCcccCHHHHHhhc--------------------CC----------CCC
Q psy7460          24 GPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECA--------------------KQ----------CSG   72 (1026)
Q Consensus        24 ~pV~nQg~cGsCwAfA~~~~le~~~~i~~~-~~~~LS~q~l~~c~--------------------~~----------~~g   72 (1026)
                      .||.||..-|-||.|+.+..|---+..+-+ ..++||..+|+--+                    ..          +..
T Consensus        63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~  142 (457)
T KOG4128|consen   63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV  142 (457)
T ss_pred             cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence            599999999999999998877665555544 45889998764221                    10          123


Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCcCCC
Q psy7460          73 CDGCFFEPSIEYTHQAGLESEKDYPYK   99 (1026)
Q Consensus        73 C~GG~~~~a~~~~~~~Gv~~e~~~PY~   99 (1026)
                      -+||.-...++.++++|+.+..|||-.
T Consensus       143 ~DGGqw~MfvNlVkKYGviPKkcy~~s  169 (457)
T KOG4128|consen  143 PDGGQWQMFVNLVKKYGVIPKKCYLHS  169 (457)
T ss_pred             CCCchHHHHHHHHHHhCCCcHHhcccc
Confidence            469999999999999999999999753

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.25  E-value=0.13  Score=51.80  Aligned_cols=128  Identities=18%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHH--------HHcCCCcccCHHHHHhhcCCCCCCCCCChHHHHHHHHHcCCCCCCCcCC
Q psy7460          27 GDQADCGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPY   98 (1026)
Q Consensus        27 ~nQg~cGsCwAfA~~~~le~~~~--------i~~~~~~~LS~q~l~~c~~~~~gC~GG~~~~a~~~~~~~Gv~~e~~~PY   98 (1026)
                      ..||.-+-|-+||.+++|-....        |++.-...+|.++|.+++        -.+...++|.+..|....     
T Consensus        17 EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~--------~~~~~~i~y~ks~g~~~~-----   83 (175)
T PF05543_consen   17 ETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTS--------LTPNQMIKYAKSQGRNPQ-----   83 (175)
T ss_dssp             ---SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH----------B-HHHHHHHHHHTTEEEE-----
T ss_pred             eccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcC--------CCHHHHHHHHHHcCcchh-----
Confidence            46899999999999888875521        222223556666665543        345678888886664321     


Q ss_pred             CCCCCCcccCCCCcccceeeccceeeecCcHHHHHHHHHhcCCcEEEEecccccccCCceeecCCCCCCCCCCCcEEEEE
Q psy7460          99 KNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV  178 (1026)
Q Consensus        99 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~~~~~~~~HAV~IV  178 (1026)
                                             ......+.++++++|.++-|+.+....-.              .......+|||+||
T Consensus        84 -----------------------~~n~~~s~~eV~~~~~~nk~i~i~~~~v~--------------~~~~~~~gHAlavv  126 (175)
T PF05543_consen   84 -----------------------YNNRMPSFDEVKKLIDNNKGIAILADRVE--------------QTNGPHAGHALAVV  126 (175)
T ss_dssp             -----------------------EECS---HHHHHHHHHTT-EEEEEEEETT--------------SCTTB--EEEEEEE
T ss_pred             -----------------------HhcCCCCHHHHHHHHHcCCCeEEEecccc--------------cCCCCccceeEEEE
Confidence                                   11111256899999999999887665311              11223579999999


Q ss_pred             Eeee-cCCccEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         179 GYGK-QDNIPYWLVRNSWGPIGPDEGFFKIER  209 (1026)
Q Consensus       179 GyG~-~~g~~yWIVrNSWG~~WG~~Gyf~i~~  209 (1026)
                      ||-. .+|.++.++-|-|     +++++-+.-
T Consensus       127 Gya~~~~g~~~y~~WNPW-----~~~~~~~sa  153 (175)
T PF05543_consen  127 GYAKPNNGQKTYYFWNPW-----WNDVMIQSA  153 (175)
T ss_dssp             EEEEETTSEEEEEEE-TT------SS-EEEET
T ss_pred             eeeecCCCCeEEEEeCCc-----cCCcEEEec
Confidence            9987 5669999999999     445555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=94.15  E-value=0.2  Score=48.80  Aligned_cols=58  Identities=26%  Similarity=0.415  Sum_probs=34.6

Q ss_pred             CcHHHHHHHHHhcCCcEEEEecccccccCCceeecCCCCCCCCCCCcEEEEEEeeecCCccEEEEEcCC
Q psy7460         127 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSW  195 (1026)
Q Consensus       127 ~~~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~~~~~~~~HAV~IVGyG~~~g~~yWIVrNSW  195 (1026)
                      .+.+.|+++|.++.||.+.+....-.. .+..+.       ....+|.|+|+||..+.   +++|-.+|
T Consensus        87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~-~~~~~~-------~~~~~H~vvi~Gy~~~~---~~~v~DP~  144 (144)
T PF13529_consen   87 ASFDDIKQEIDAGRPVIVSVNSGWRPP-NGDGYD-------GTYGGHYVVIIGYDEDG---YVYVNDPW  144 (144)
T ss_dssp             S-HHHHHHHHHTT--EEEEEETTSS---TTEEEE-------E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred             CcHHHHHHHHHCCCcEEEEEEcccccC-CCCCcC-------CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence            356899999999999999997421110 111111       22479999999995533   78888877

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.52  E-value=0.52  Score=47.63  Aligned_cols=118  Identities=19%  Similarity=0.249  Sum_probs=69.3

Q ss_pred             CCCCCcchHHHHhHHHHHHHHH--------HHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhCCcCCCCCCc
Q psy7460         393 DQAACGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDYP  463 (1026)
Q Consensus       393 ~Qg~CgSCwAfa~~~~~e~~~~--------i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~yp  463 (1026)
                      .||.=+=|-+|+.++.|-....        |.+.-...+|+++|.+++.          .+ ..++|.+..|....    
T Consensus        18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~g~~~~----   83 (175)
T PF05543_consen   18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQGRNPQ----   83 (175)
T ss_dssp             --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHTTEEEE----
T ss_pred             ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHcCcchh----
Confidence            4787788999999998876522        2222346788899887742          23 66777765443210    


Q ss_pred             ccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCCCCCCCCeEEEE
Q psy7460         464 YRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLL  543 (1026)
Q Consensus       464 Y~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~i  543 (1026)
                                              ......+-+++++++-++-||.+-.+.-             . .......+||++|
T Consensus        84 ------------------------~~n~~~s~~eV~~~~~~nk~i~i~~~~v-------------~-~~~~~~~gHAlav  125 (175)
T PF05543_consen   84 ------------------------YNNRMPSFDEVKKLIDNNKGIAILADRV-------------E-QTNGPHAGHALAV  125 (175)
T ss_dssp             ------------------------EECS---HHHHHHHHHTT-EEEEEEEET-------------T-SCTTB--EEEEEE
T ss_pred             ------------------------HhcCCCCHHHHHHHHHcCCCeEEEeccc-------------c-cCCCCccceeEEE
Confidence                                    0111225788999999888888766531             1 1123357999999


Q ss_pred             EEeee-cCCccEEEEEcCCC
Q psy7460         544 VGYGK-QDDIPYWLARNSWG  562 (1026)
Q Consensus       544 VGyG~-~~g~~YWivkNSWG  562 (1026)
                      |||-. .+|.+|.++=|-|-
T Consensus       126 vGya~~~~g~~~y~~WNPW~  145 (175)
T PF05543_consen  126 VGYAKPNNGQKTYYFWNPWW  145 (175)
T ss_dssp             EEEEEETTSEEEEEEE-TT-
T ss_pred             EeeeecCCCCeEEEEeCCcc
Confidence            99987 56789999988874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=91.90  E-value=1.3  Score=42.98  Aligned_cols=57  Identities=26%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCC
Q psy7460         859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSW  926 (1026)
Q Consensus       859 ~~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSW  926 (1026)
                      +.+.|+++|.+..||.+.+....-.. ....+..       ....|.|+|+||..+.   +++|..+|
T Consensus        88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~-~~~~~~~-------~~~~H~vvi~Gy~~~~---~~~v~DP~  144 (144)
T PF13529_consen   88 SFDDIKQEIDAGRPVIVSVNSGWRPP-NGDGYDG-------TYGGHYVVIIGYDEDG---YVYVNDPW  144 (144)
T ss_dssp             -HHHHHHHHHTT--EEEEEETTSS---TTEEEEE--------TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred             cHHHHHHHHHCCCcEEEEEEcccccC-CCCCcCC-------CcCCEEEEEEEEeCCC---EEEEeCCC
Confidence            46899999998889999997421000 1122221       2468999999996533   78887766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1026
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		1e-34
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		8e-34
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		4e-13
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		1e-33
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		7e-12
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		1e-33
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		2e-33
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		8e-09
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		3e-33
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		4e-33
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		1e-08
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		6e-33
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		7e-33
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		6e-09
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		9e-33
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		1e-32
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		1e-08
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		1e-32
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		1e-32
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		1e-08
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		1e-32
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		2e-32
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		2e-09
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		3e-32
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		3e-32
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		8e-09
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		6e-32
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		7e-32
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		2e-08
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		7e-32
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		8e-32
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		9e-09
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		3e-31
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		4e-09
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		1e-30
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		1e-30
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		2e-08
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		2e-30
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		2e-30
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		1e-08
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		8e-30
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		9e-30
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		1e-07
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		8e-30
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		1e-29
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		4e-08
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		1e-29
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		2e-29
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		2e-08
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		1e-28
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		6e-28
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		4e-06
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		1e-28
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		6e-28
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		4e-06
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		1e-28
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		7e-28
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		4e-06
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		2e-28
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		6e-28
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		5e-06
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		2e-28
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		7e-28
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		4e-06
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		2e-28
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		7e-28
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		4e-06
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		2e-28
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		1e-27
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		1e-05
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		5e-28
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		3e-27
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		4e-06
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		7e-28
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		4e-27
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		3e-06
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		1e-27
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		4e-27
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		1e-05
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		2e-27
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		7e-27
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		4e-06
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-27
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-27
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-06
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		2e-27
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		7e-27
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		4e-06
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		2e-27
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		7e-27
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		4e-06
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		2e-27
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		2e-27
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		2e-06
3of8_A	221	Structural Basis For Reversible And Irreversible In		2e-27
3of8_A	221	Structural Basis For Reversible And Irreversible In		3e-27
3of8_A	221	Structural Basis For Reversible And Irreversible In		2e-06
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		3e-27
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		3e-27
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		2e-06
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		2e-26
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		2e-26
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		2e-06
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		2e-26
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		2e-26
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		2e-06
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		2e-26
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		2e-26
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		1e-06
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		3e-26
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		3e-26
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		2e-06
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		9e-26
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		1e-25
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		3e-04
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		1e-25
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		1e-25
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		3e-06
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		1e-25
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		1e-25
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		7e-07
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		1e-25
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		2e-25
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		1e-04
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		3e-25
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		4e-25
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		4e-08
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		5e-25
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		5e-25
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		6e-08
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		8e-25
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		9e-25
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		6e-07
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		1e-24
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		9e-09
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		1e-24
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		1e-24
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		7e-08
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		1e-24
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		1e-24
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		7e-08
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		1e-24
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		1e-08
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		1e-24
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		2e-24
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		3e-24
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		4e-05
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		3e-24
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		4e-24
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		2e-05
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		9e-24
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		1e-23
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		5e-07
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		2e-23
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		2e-23
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		3e-23
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		2e-05
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		3e-23
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		3e-23
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		7e-07
1pci_A	322	Procaricain Length = 322		4e-23
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		1e-22
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		2e-22
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		3e-22
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		1e-04
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		4e-22
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		7e-22
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		1e-05
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		9e-22
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		7e-21
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		1e-21
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		6e-04
2act_A	220	Crystallographic Refinement Of The Structure Of Act		2e-21
2act_A	220	Crystallographic Refinement Of The Structure Of Act		5e-21
2act_A	220	Crystallographic Refinement Of The Structure Of Act		1e-05
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		2e-20
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		2e-20
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		9e-20
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		2e-19
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		2e-19
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		3e-19
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		3e-19
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		3e-19
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		5e-05
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		9e-19
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		9e-19
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		2e-18
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		2e-18
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		3e-18
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		4e-18
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		4e-18
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		7e-18
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		3e-17
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		4e-17
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		4e-17
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		5e-17
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		6e-07
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		6e-17
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		6e-17
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		6e-07
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		6e-17
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		6e-07
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		5e-16
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		5e-16
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		1e-06
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		3e-15
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		4e-09
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		4e-15
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		4e-09
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		5e-15
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		9e-15
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		1e-14
1mir_A	322	Rat Procathepsin B Length = 322		4e-14
1mir_A	322	Rat Procathepsin B Length = 322		4e-09
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		9e-14
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		1e-13
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		2e-08
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		1e-13
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		1e-13
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		2e-08
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		1e-13
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		2e-08
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		1e-13
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		2e-08
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		1e-12
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		1e-12
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		2e-08
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		2e-12
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		2e-12
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		8e-11
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		3e-08
1k3b_B	164	Crystal Structure Of Human Dipeptidyl Peptidase I (		5e-10
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		9e-10
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		5e-08
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		5e-09
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		5e-09
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		6e-09
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		2e-08
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		2e-08
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		2e-08
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		3e-08
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		3e-08
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		5e-08
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-05
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		4e-05
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		1e-04
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-05
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		4e-05
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		1e-04

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 3/217 (1%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
            P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K  
Sbjct: 1   APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 60
Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
             C G           +  GLE+E DY Y+   G    C +   K K++           
Sbjct: 61  KACMGGLPSNAYSAIKNLGGLETEDDYSYQ---GHMQSCQFSAEKAKVYIQDSVELSQNE 117
Query: 496 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 555
           + +   L K GP+SV +N+  + FY     R     CSP+ + HAVLLVGYG++ D+P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 556 LARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
             +NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score =  142 bits (359), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 8/219 (3%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
            P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K  
Sbjct: 1   APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 60
Query: 802 SGCDGCFFEPSIEYT---HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
             C G    PS  Y+   +  GLE+E DY Y+   G    C +   K K++         
Sbjct: 61  KACMGGL--PSNAYSAIKNLGGLETEDDYSYQ---GHMQSCQFSAEKAKVYIQDSVELSQ 115
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
             + +   L K GP+SV +N+  +  Y     R     CSP+ + HAVLLVGYG++ ++P
Sbjct: 116 NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVP 175
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 957
           +W ++NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 45/61 (73%)
Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 1024
            CSP+ + HAVLLVGYG++ D+P+W ++NSWG    ++G++ + RG+ ACG+  +A  A +
Sbjct: 154  CSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213
Query: 1025 D 1025
            D
Sbjct: 214  D 214

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 119/223 (53%), Gaps = 21/223 (9%)
Query: 743 PDAWDWRKK-NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           P + DWRKK N   P  +Q +CGSCW FS  G LE   AI TGK++  ++ QLV+CA+  
Sbjct: 2   PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 802 S--GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
           +  GC G     + EY  +  G+  E  YPYK   G+   C +   K   F  KD   + 
Sbjct: 62  NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK---GQDDHCKFQPDKAIAFV-KDVANIT 117
Query: 857 FNGSETMKKILYKYGPLSV---LLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVG 910
            N  E M + +  Y P+S    + N  L++    Y+ T   K     +P  + HAVL VG
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLAVG 172
Query: 911 YGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 953
           YG+++ IPYW+V+NSWGP     G+F IERG N CG+   A Y
Sbjct: 173 YGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 966  SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 1021
            +P  + HAVL VGYG+++ IPYW+V+NSWGP     G+F IERG N CG+   A Y
Sbjct: 160  TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 6   EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
           E +G  PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+
Sbjct: 95  EWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVD 154
Query: 66  CAKQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDF 123
           C  +  GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   
Sbjct: 155 CVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYRE 211
Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
           +     + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q
Sbjct: 212 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ 271
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
               +W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 272 KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 6/221 (2%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
           +G  PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C 
Sbjct: 97  EGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV 156
Query: 799 KQCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLH 856
            +  GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   + 
Sbjct: 157 SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIP 213
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
               + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q  
Sbjct: 214 EGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKG 273
Query: 917 IPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             +W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 274 NKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
            DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A 
Sbjct: 251  DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 310
Query: 1021 YATI 1024
            +  +
Sbjct: 311  FPKM 314

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%)
Query: 9   GPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK 68
           G  PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  
Sbjct: 1   GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS 60
Query: 69  QCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHF 126
           +  GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +  
Sbjct: 61  ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPE 117
Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
              + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q   
Sbjct: 118 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGN 177
Query: 187 PYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
            +W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 KHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%)
Query: 740 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK 799
           G  PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  
Sbjct: 1   GRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS 60
Query: 800 QCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHF 857
           +  GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +  
Sbjct: 61  ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPE 117
Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
              + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q   
Sbjct: 118 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGN 177
Query: 918 PYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
            +W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 KHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
            DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A 
Sbjct: 154  DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 213
Query: 1021 YATI 1024
            +  +
Sbjct: 214  FPKM 217

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 6/218 (2%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  + 
Sbjct: 1   TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 71  SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
            GC G +   + +Y  +  G++SE  YPY    G+   C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
            + +K+ + + GP+SV +++ L      +     DE CS  +L HAVL VGYG Q    +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 WIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 6/218 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
            PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  + 
Sbjct: 1   TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
            GC G +   + +Y  +  G++SE  YPY    G+   C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
            + +K+ + + GP+SV +++ L      +     DE CS  +L HAVL VGYG Q    +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 WIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
            DE CS  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A 
Sbjct: 152  DENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLAS 211
Query: 1021 YATI 1024
            +  +
Sbjct: 212  FPKM 215

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score =  139 bits (350), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  + 
Sbjct: 1   APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 71  SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
            GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
            + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
            PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  + 
Sbjct: 1   APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
            GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
            + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
            DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A 
Sbjct: 152  DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 211
Query: 1021 YATI 1024
            +  +
Sbjct: 212  FPKM 215

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)
Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 1   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 72  GCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGS 129
           GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +     
Sbjct: 61  GCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNE 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
           + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 190 LVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           +++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 IIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 1   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 803 GCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGS 860
           GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +     
Sbjct: 61  GCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNE 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
           + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 921 LVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           +++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 IIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
            DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A 
Sbjct: 151  DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 210
Query: 1021 YATI 1024
            +  +
Sbjct: 211  FPKM 214

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           VPD  DWR+        DQ +CGS WAFS  G +EGQY       + FS+ QLV+C++  
Sbjct: 92  VPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW 151
Query: 71  --SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN 127
             +GC G   E + +Y  Q GLE+E  YPY    G+   C Y+K   V   TG   +H  
Sbjct: 152 GNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEGQ---CRYNKQLGVAKVTGFYTVHSG 208
Query: 128 GSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 185
               +K ++   GP +V ++  SD +   +G       +TCSP  + HAVL VGYG Q  
Sbjct: 209 SEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQGG 265
Query: 186 IPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 220
             YW+V+NSWG    + G+ ++ R   N CGI  +A
Sbjct: 266 TDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 112/216 (51%), Gaps = 12/216 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           VPD  DWR+        DQ  CGS WAFS  G +EGQY       + FS+ QLV+C++  
Sbjct: 92  VPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW 151
Query: 802 --SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN 858
             +GC G   E + +Y  Q GLE+E  YPY    G+   C Y+K   V   TG   +H  
Sbjct: 152 GNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEGQ---CRYNKQLGVAKVTGFYTVHSG 208
Query: 859 GSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
               +K ++   GP +V ++  SD +   +G       +TCSP  + HAVL VGYG Q  
Sbjct: 209 SEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQGG 265
Query: 917 IPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 951
             YW+V+NSWG    + G+ ++ R   N CGI  +A
Sbjct: 266 TDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 934  GFFKIERGN-----NACGIEQIAGYATIDV----------VKNDETCSPYDLGHAVLLVG 978
            GF+ +  G+     N  G E  A  A +DV          +   +TCSP  + HAVL VG
Sbjct: 201  GFYTVHSGSEVELKNLVGAEGPAAVA-VDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVG 259
Query: 979  YGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIA 1019
            YG Q    YW+V+NSWG    + G+ ++ R   N CGI  +A
Sbjct: 260  YGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score =  137 bits (345), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 7/217 (3%)
Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P A DWR+K    P  DQ  CGSCWAFS  G +EGQ+ +    LV  S+  LV C     
Sbjct: 2   PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 72  GCDGCFFEPSIEY---THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
           GC G   + +  +   ++   + +E  YPY + NGE+ +C  +  ++             
Sbjct: 62  GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD 121
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
            + +   L + GPL++ +++    DYNG  +     +C+   L H VLLVGY    N PY
Sbjct: 122 EDAIAAYLAENGPLAIAVDATSFMDYNGGIL----TSCTSEQLDHGVLLVGYNDASNPPY 177
Query: 189 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
           W+++NSW  +  ++G+ +IE+G N C + Q    A +
Sbjct: 178 WIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score =  137 bits (345), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 7/217 (3%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P A DWR+K    P  DQ  CGSCWAFS  G +EGQ+ +    LV  S+  LV C     
Sbjct: 2   PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 803 GCDGCFFEPSIEY---THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
           GC G   + +  +   ++   + +E  YPY + NGE+ +C  +  ++             
Sbjct: 62  GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD 121
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
            + +   L + GPL++ +++    DYNG  +     +C+   L H VLLVGY    N PY
Sbjct: 122 EDAIAAYLAENGPLAIAVDATSFMDYNGGIL----TSCTSEQLDHGVLLVGYNDASNPPY 177
Query: 920 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
           W+++NSW  +  ++G+ +IE+G N C + Q    A +
Sbjct: 178 WIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964  TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
            +C+   L H VLLVGY    + PYW+++NSW  +  ++G+ +IE+G N C + Q    A 
Sbjct: 154  SCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
Query: 1024 I 1024
            +
Sbjct: 214  V 214

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score =  136 bits (343), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 6/218 (2%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            PD+ D+R+K    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  + 
Sbjct: 1   APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 71  SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
            GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
            + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG+     +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           W+++NSWG      G+ K+ R  NNACGI  +A +  +
Sbjct: 178 WIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 6/218 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
            PD+ D+R+K    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  + 
Sbjct: 1   APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
            GC G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
            + +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG+     +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           W+++NSWG      G+ K+ R  NNACGI  +A +  +
Sbjct: 178 WIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
            DE+C+  +L HAVL VGYG+     +W+++NSWG      G+ K+ R  NNACGI  +A 
Sbjct: 152  DESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLAS 211
Query: 1021 YATI 1024
            +  +
Sbjct: 212  FPKM 215

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 6/216 (2%)
Query: 13  DAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 72
           D+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  G
Sbjct: 1   DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 73  CDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSE 130
           C G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +     +
Sbjct: 61  CGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEK 117
Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
            +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +W+
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 177
Query: 191 VRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           ++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score =  135 bits (341), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 6/216 (2%)
Query: 744 DAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSG 803
           D+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  G
Sbjct: 1   DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 804 CDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSE 861
           C G +   + +Y  +  G++SE  YPY    G++  C Y+ + K     G   +     +
Sbjct: 61  CGGGYMTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEK 117
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 921
            +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +W+
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 177
Query: 922 VRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           ++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAG 1020
            DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A 
Sbjct: 150  DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 209
Query: 1021 YATI 1024
            +  +
Sbjct: 210  FPKM 213

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 150/322 (46%), Gaps = 27/322 (8%)
Query: 654 ILETFKAFIVKRGRQYANDEE-------IKERFEYFKQDGHKKHE-----RYGTSEFSDR 701
           + E ++ F     R Y N +E        +++ E F++   K  +       G + F+D 
Sbjct: 18  VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 702 SPEEILCKT-GFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQ 760
           +PEE+   T G       ++  +  +                P ++DWR + +  P  +Q
Sbjct: 78  TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR---YPASFDWRDQGMVSPVKNQ 134
Query: 761 AACGSCWAFSIAGMLEGQYAIKTGKLVE--FSKSQLVECAKQCSGCDGCFFEPSIEYTHQ 818
            +CGS WAFS  G +E Q  I  G   +   S+ QLV+C     GC G +   +  Y  Q
Sbjct: 135 GSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQ 194
Query: 819 -AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVL 876
             G++SE  YPY+ A+G    C YD ++V    +G  +L       +  ++   GP++V 
Sbjct: 195 NGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVA 251
Query: 877 LNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGF 935
            ++D     Y+G      + TC      HAVL+VGYG ++   YWLV+NSWG     +G+
Sbjct: 252 FDADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGY 309
Query: 936 FKIER-GNNACGIEQIAGYATI 956
           FKI R  NN CGI  +A   T+
Sbjct: 310 FKIARNANNHCGIAGVASVPTL 331

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAG 1020
            + TC      HAVL+VGYG ++   YWLV+NSWG     +G+FKI R  NN CGI  +A 
Sbjct: 268  NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVAS 327
Query: 1021 YATI 1024
              T+
Sbjct: 328  VPTL 331

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 117/226 (51%), Gaps = 16/226 (7%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
           +P + DWRKK    P  +Q  CGSCWAFS  G LEGQ   KTGKLV  S+  LV+C++  
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 70  -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 126
              GC+G F   + +Y  +  GL+SE+ YPY   +     C Y  ++ V   TG   +  
Sbjct: 61  GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 127 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 181
              + + K +   GP+SV +++       Y      + D  CS  +L H VL+VGYG   
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 182 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
              DN  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 117/226 (51%), Gaps = 16/226 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +P + DWRKK    P  +Q  CGSCWAFS  G LEGQ   KTGKLV  S+  LV+C++  
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 801 -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 857
              GC+G F   + +Y  +  GL+SE+ YPY   +     C Y  ++ V   TG   +  
Sbjct: 61  GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 858 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 912
              + + K +   GP+SV +++       Y      + D  CS  +L H VL+VGYG   
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 913 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
              DN  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 929  IGPDEGFFKIERGNNACGIEQIAGYATIDVVKN---------------DETCSPYDLGHA 973
            +  D GF  +  G     ++ +A    I V  +               +  CS  +L H 
Sbjct: 106  VAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHG 165
Query: 974  VLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 1024
            VL+VGYG      D+  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 166  VLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ    TG L+  +   LV+C  + 
Sbjct: 1   APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEN 60
Query: 71  SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 128
            GC G +   + +Y  +  G++SE  YPY    G+   C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
              +K+ +   GP+SV +++ L      +     DE CS   L HAVL VGYG Q    +
Sbjct: 118 EAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKH 177
Query: 189 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 222
           W+++NSWG    + G+  + R  NNACGI  +A +
Sbjct: 178 WIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
            PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ    TG L+  +   LV+C  + 
Sbjct: 1   APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEN 60
Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNG 859
            GC G +   + +Y  +  G++SE  YPY    G+   C Y+ + K     G   +    
Sbjct: 61  DGCGGGYMTNAFQYVQRNRGIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGN 117
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
              +K+ +   GP+SV +++ L      +     DE CS   L HAVL VGYG Q    +
Sbjct: 118 EAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKH 177
Query: 920 WLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 953
           W+++NSWG    + G+  + R  NNACGI  +A +
Sbjct: 178 WIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 924  NSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV---------------VKNDETCSPY 968
            N  G      G+ +I  GN A     +A    + V               V  DE CS  
Sbjct: 99   NPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSD 158
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 1021
             L HAVL VGYG Q    +W+++NSWG    + G+  + R  NNACGI  +A +
Sbjct: 159  ALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASF 212

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score =  129 bits (324), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            P++WDW KK V      Q  CGS WAFS  G +E  +AI TG LV  S+ +L++C  + 
Sbjct: 2   APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 71  SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE------KFKCAYDKSKVKLFTGKDF 123
            GC   +   S E+     G+ SE DYPYK  +G+      + K   D   V++ + +  
Sbjct: 62  EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNEST 121
Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
                S     +L +  P+SV +++   H Y+G  I       SPY + H VL+VGYG +
Sbjct: 122 ESEAESSLQSFVLEQ--PISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER--GN--NACGIEQIAGYATID 226
           D + YW+ +NSWG     +G+ +I+R  GN    CG+   A Y  I+
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score =  129 bits (324), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
            P++WDW KK V      Q  CGS WAFS  G +E  +AI TG LV  S+ +L++C  + 
Sbjct: 2   APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGE------KFKCAYDKSKVKLFTGKDF 854
            GC   +   S E+     G+ SE DYPYK  +G+      + K   D   V++ + +  
Sbjct: 62  EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNEST 121
Query: 855 LHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 914
                S     +L +  P+SV +++   H Y+G  I       SPY + H VL+VGYG +
Sbjct: 122 ESEAESSLQSFVLEQ--PISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER--GN--NACGIEQIAGYATID 957
           D + YW+ +NSWG     +G+ +I+R  GN    CG+   A Y  I+
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 966  SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GN--NACGIEQIAGY 1021
            SPY + H VL+VGYG +D + YW+ +NSWG     +G+ +I+R  GN    CG+   A Y
Sbjct: 162  SPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASY 221
Query: 1022 ATID 1025
              I+
Sbjct: 222  PIIE 225

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score =  129 bits (324), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 13/227 (5%)
Query: 5   VEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 64
           V    P+  + DWR  N      DQ  CGS W+FS  G +EGQ A++ G+L   S+  L+
Sbjct: 110 VSSKKPLAASVDWRS-NAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLI 168
Query: 65  ECAKQ--CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGK 121
           +C+     +GCDG + + +  Y H  G+ SE  YPY+ A G+   C +D S+ V   +G 
Sbjct: 169 DCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYE-AQGDY--CRFDSSQSVTTLSGY 225
Query: 122 DFLHFNGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGY 180
             L      ++   + + GP++V ++ +D +  Y+G      D+TC+  DL H VL+VGY
Sbjct: 226 YDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGY 283
Query: 181 GKQDNIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYATI 225
           G  +   YW+++NSWG    + G+++  R  GNN CGI   A Y  +
Sbjct: 284 GSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAASYPAL 329

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 13/222 (5%)
Query: 741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 800
           P+  + DWR  N      DQ  CGS W+FS  G +EGQ A++ G+L   S+  L++C+  
Sbjct: 115 PLAASVDWRS-NAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSS 173
Query: 801 --CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGKDFLHF 857
              +GCDG + + +  Y H  G+ SE  YPY+ A G+   C +D S+ V   +G   L  
Sbjct: 174 YGNAGCDGGWMDSAFSYIHDYGIMSESAYPYE-AQGDY--CRFDSSQSVTTLSGYYDLPS 230
Query: 858 NGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
               ++   + + GP++V ++ +D +  Y+G      D+TC+  DL H VL+VGYG  + 
Sbjct: 231 GDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDNG 288
Query: 917 IPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYATI 956
             YW+++NSWG    + G+++  R  GNN CGI   A Y  +
Sbjct: 289 QDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAASYPAL 329

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIA 1019
            D+TC+  DL H VL+VGYG  +   YW+++NSWG    + G+++  R  GNN CGI   A
Sbjct: 266  DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAA 324
Query: 1020 GYATI 1024
             Y  +
Sbjct: 325  SYPAL 329

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 16/226 (7%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
           +P + DWRKK    P  +Q  CGS WAFS  G LEGQ   KTGKLV  S+  LV+C++  
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 70  -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 126
              GC+G F   + +Y  +  GL+SE+ YPY   +     C Y  ++ V   TG   +  
Sbjct: 61  GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 127 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 181
              + + K +   GP+SV +++       Y      + D  CS  +L H VL+VGYG   
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 182 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
              DN  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 16/226 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +P + DWRKK    P  +Q  CGS WAFS  G LEGQ   KTGKLV  S+  LV+C++  
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 801 -CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAY-DKSKVKLFTGKDFLHF 857
              GC+G F   + +Y  +  GL+SE+ YPY   +     C Y  ++ V   TG   +  
Sbjct: 61  GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 858 NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--- 912
              + + K +   GP+SV +++       Y      + D  CS  +L H VL+VGYG   
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEG 175
Query: 913 -KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
              DN  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 176 ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 929  IGPDEGFFKIERGNNACGIEQIAGYATIDVVKN---------------DETCSPYDLGHA 973
            +  D GF  +  G     ++ +A    I V  +               +  CS  +L H 
Sbjct: 106  VAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHG 165
Query: 974  VLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 1024
            VL+VGYG      D+  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 166  VLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 4   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 64  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 119
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 120 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 178
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 179 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 4   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 64  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 119
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 120 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 178
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 179 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 164  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 162  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score =  123 bits (308), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 161  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 162  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 161  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 161  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T + +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCRKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    ++G+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T + +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCRKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    ++G+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    ++G+ ++ R   N CGI     Y  I
Sbjct: 161  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score =  123 bits (308), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDLKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD---LKCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 161  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 99  LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 158
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+  +    KC YD SK +  T   +  L
Sbjct: 159 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 214
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 215 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 273
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 274 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 99  LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 158
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 159 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 214
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 215 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 273
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 274 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 259  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD S  +  T + +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SAYRAATCRKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    ++G+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD S  +  T + +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SAYRAATCRKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    ++G+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    ++G+ ++ R   N CGI     Y  I
Sbjct: 161  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 117
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 117
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 176
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 162  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 39  APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 98
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 99  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 154
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 155 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 211
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 212 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 39  APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 98
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 99  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 154
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 155 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 211
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 212 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 194  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 253
Query: 1020 GYATI 1024
             Y T+
Sbjct: 254  SYPTV 258

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 116
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 116
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 175
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 161  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 3   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF--L 490
            G  GC+G  +    +Y     G++S+  YPY+       KC YD SK +  T   +  L
Sbjct: 63  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYD-SKYRAATCSKYTEL 118
Query: 491 YFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
            +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +
Sbjct: 119 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 177
Query: 551 DIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 591
              YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 178 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 12/222 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +PD+ DWR+K        Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 3   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 801 --CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--L 855
               GC+G F   + +Y     G++S+  YPYK  +    KC YD SK +  T   +  L
Sbjct: 63  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTEL 118
Query: 856 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
            +   + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +
Sbjct: 119 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLN 177
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 956
              YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 178 GKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 969  DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI 1024
            ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 163  NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 156  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
             Y T+
Sbjct: 216  SYPTV 220

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 2   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 62  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 2   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 62  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 157  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 216
Query: 1020 GYATI 1024
             Y T+
Sbjct: 217  SYPTV 221

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 156  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
             Y T+
Sbjct: 216  SYPTV 220

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 2   APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 62  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 2   APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 61
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 62  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 117
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 174
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 157  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 216
Query: 1020 GYATI 1024
             Y T+
Sbjct: 217  SYPTV 221

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 156  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
             Y T+
Sbjct: 216  SYPTV 220

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 97  APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 156
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 157 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 212
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 213 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 269
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 270 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 97  APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 156
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 157 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 212
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 213 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 269
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 270 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 252  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 311
Query: 1020 GYATI 1024
             Y T+
Sbjct: 312  SYPTV 316

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 156  CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
             Y T+
Sbjct: 216  SYPTV 220

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+  DWRKK    P  +Q  CGSCWAFS    +E    I+TG L+  S+ QLV+C K+ 
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 71  SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
            GC G  F  + +Y     G+++E +YPYK   G    C   K  V++   K   H N +
Sbjct: 61  HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP---CRAAKKVVRIDGYKGVPHCNEN 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
              K +  +   +++  +S     Y          T     L H V++VGY K     YW
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGT----KLNHGVVIVGYWKD----YW 169
Query: 190 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
           +VRNSWG    ++G+ +++R  G   CGI ++  Y T
Sbjct: 170 IVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWRKK    P  +Q  CGSCWAFS    +E    I+TG L+  S+ QLV+C K+ 
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
            GC G  F  + +Y     G+++E +YPYK   G    C   K  V++   K   H N +
Sbjct: 61  HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP---CRAAKKVVRIDGYKGVPHCNEN 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
              K +  +   +++  +S     Y          T     L H V++VGY K     YW
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGT----KLNHGVVIVGYWKD----YW 169
Query: 921 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
           +VRNSWG    ++G+ +++R  G   CGI ++  Y T
Sbjct: 170 IVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 970  LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 1023
            L H V++VGY K     YW+VRNSWG    ++G+ +++R  G   CGI ++  Y T
Sbjct: 155  LNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 93  APRSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPE 152
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 153 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 208
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 209 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 265
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + D   YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 266 STESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 93  APRSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPE 152
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 153 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIP 208
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 209 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 265
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + D   YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 266 STESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + D   YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 248  CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 307
Query: 1020 GYATI 1024
             Y T+
Sbjct: 308  SYPTV 312

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 182 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             + D+  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-- 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFE 173
Query: 913 --KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
             + D+  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 STESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 965  CSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
            CS  D+ H VL+VGYG    + DD  YWLV+NSWG      G+ K+ +   N CGI   A
Sbjct: 156  CSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 215
Query: 1020 GYATI 1024
             Y T+
Sbjct: 216  SYPTV 220

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+  DWR K    P  +Q  CGSCWAFS    +E    I+TG L+  S+ QLV+C+K+ 
Sbjct: 1   LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 71  SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
            GC G +F+ + +Y     G+++E +YPYK   G    C   K  V++   K     N +
Sbjct: 61  HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP---CRAAKKVVRIDGCKGVPQCNEN 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
                +  +   +++  +S     Y G        T     L H V++VGYGK     YW
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGT----KLNHGVVIVGYGKD----YW 169
Query: 190 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
           +VRNSWG    ++G+ +++R  G   CGI ++  Y T
Sbjct: 170 IVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR K    P  +Q  CGSCWAFS    +E    I+TG L+  S+ QLV+C+K+ 
Sbjct: 1   LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
            GC G +F+ + +Y     G+++E +YPYK   G    C   K  V++   K     N +
Sbjct: 61  HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP---CRAAKKVVRIDGCKGVPQCNEN 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
                +  +   +++  +S     Y G        T     L H V++VGYGK     YW
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGT----KLNHGVVIVGYGKD----YW 169
Query: 921 LVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
           +VRNSWG    ++G+ +++R  G   CGI ++  Y T
Sbjct: 170 IVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 970  LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 1023
            L H V++VGYGK     YW+VRNSWG    ++G+ +++R  G   CGI ++  Y T
Sbjct: 155  LNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score =  114 bits (285), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 72  GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDSAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score =  114 bits (284), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDSAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964  TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
            +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G+N C +++ A  A 
Sbjct: 154  SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
            +
Sbjct: 214  V 214

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score =  113 bits (283), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 72  GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEALDHGVLLVGYNDSAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score =  113 bits (283), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEALDHGVLLVGYNDSAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964  TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
            +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G+N C +++ A  A 
Sbjct: 154  SCVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
            +
Sbjct: 214  V 214

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
           +PD  DWR         DQ  CGSCWAFS    +EG   I TG L+  S+ +LV+C +  
Sbjct: 1   LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 69  QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
              GCDG F     ++  +  G+ +E +YPY     E+ +C  D  + K  +   +  + 
Sbjct: 61  NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 126 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 183
           +N    ++  +  Y P+SV L +     YN         T  C    + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
             I YW+V+NSWG    +EG+ +I+R   G   CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  112 bits (280), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
           +PD  DWR         DQ  CGSCWAFS    +EG   I TG L+  S+ +LV+C +  
Sbjct: 1   LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
              GCDG F     ++  +  G+ +E +YPY     E+ +C  D  + K  +   +  + 
Sbjct: 61  NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 914
           +N    ++  +  Y P+SV L +     YN         T  C    + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
             I YW+V+NSWG    +EG+ +I+R   G   CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 972  HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
            HAV +VGYG +  I YW+V+NSWG    +EG+ +I+R   G   CGI + A Y
Sbjct: 162  HAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 21/236 (8%)
Query: 742 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 796
           +P++WDWR     N   P  +Q +CGSC++F+  GMLE +  I T   +    S  ++V 
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 797 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 855
           C+    GCDG F +  + +Y    G+  E  +PY   +     C   ++ ++ ++ + + 
Sbjct: 266 CSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDA---PCKPKENCLRYYSSEYYY 322
Query: 856 HFN-----GSETMKKILYKYGPLSVL--LNSDLIHDYNGTPIRKN-DETCSPYDL-GHAV 906
                       MK  L K+GP++V   ++ D +H ++G        +  +P++L  HAV
Sbjct: 323 VGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAV 382
Query: 907 LLVGYGKQ--DNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVK 960
           LLVGYGK     + YW+V+NSWG    + G+F+I RG + C IE IA  A I + K
Sbjct: 383 LLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA-MAAIPIPK 437

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 966  SPYDL-GHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 1019
            +P++L  HAVLLVGYGK     + YW+V+NSWG    + G+F+I RG + C IE IA
Sbjct: 373  NPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 429

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   ++  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 72  GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score =  112 bits (279), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   ++  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964  TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
            +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G+N C +++ A  A 
Sbjct: 154  SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
            +
Sbjct: 214  V 214

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   ++  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 72  GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 127
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score =  112 bits (279), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   ++  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 803 GCDGCFFEPSIEYTHQ---AGLESEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFN 858
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
            ++ +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +P
Sbjct: 122 EAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQLDHGVLLVGYNDGAAVP 176
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
           YW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 964  TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
            +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G+N C +++ A  A 
Sbjct: 154  SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
Query: 1024 I 1024
            +
Sbjct: 214  V 214

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 30/236 (12%)
Query: 742 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 796
           +P +WDWR     N   P  +QA+CGSC++F+  GMLE +  I T   +    S  ++V 
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 797 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 855
           C++   GC+G F +  + +Y    GL  E  +PY    G    C   +   + ++ +   
Sbjct: 267 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--Y 321
Query: 856 HFNG-------SETMKKILYKYGPLSVLLN--SDLIH----DYNGTPIRKNDETCSPYDL 902
           H+ G          MK  L  +GP++V      D +H     Y+ T +R   +  +P++L
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFEL 378
Query: 903 -GHAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 955
             HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C IE IA  AT
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 966  SPYDL-GHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 1022
            +P++L  HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C IE IA  A
Sbjct: 374  NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 433
Query: 1023 T 1023
            T
Sbjct: 434  T 434

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 22/222 (9%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P + DWR K    P  +Q ACGS WAFS    +EG   I TG L+E S+ +LV+C K   
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC-AYDKSKVKL-FTGKDFLHFNGS 860
           GC G +   S++Y    G+ + K YPY+    +++KC A DK   K+  TG   +  N  
Sbjct: 62  GCKGGYQTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN-----DETCSPYDLGHAVLLVGYGKQD 915
            +    L    PLSVL+ +       G P +       D  C    L HAV  VGYG  D
Sbjct: 119 TSFLGALANQ-PLSVLVEA------GGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGTSD 170
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGY 953
              Y +++NSWGP   ++G+ +++R  GN+   CG+ + + Y
Sbjct: 171 GKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 28/217 (12%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P++ DWR+K    P  +Q  CGSCWAFS    +EG   I TG+L+  S+ +L++C ++  
Sbjct: 2   PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKC-AYDKSKVKLF-TGKDFLHFNGS 860
           GCDG +   S++Y    G+ +E++YPY+   G   +C A DK   K++ TG  ++  N  
Sbjct: 62  GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDE 118
Query: 861 ETMKKILYKYGPLSVLLNS--DLIHDYNG----TPIRKNDETCSPYDLGHAVLLVGYGKQ 914
            ++ + +    P+SV+ +S       Y G     P   N +        HAV  VGYGK 
Sbjct: 119 ISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCGTNTD--------HAVTAVGYGKT 169
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGI 947
               Y L++NSWGP   ++G+ +I+R +      CG+
Sbjct: 170 ----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 10/217 (4%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +PD+ DWR+     P  +Q  CGSCWAFS    +EG   I TG L+  S+ QLV+C    
Sbjct: 3   LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
            GC G +  P+ ++  +  G+ SE+ YPY+  +G       +   V + + ++    N  
Sbjct: 63  HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG-ICNSTVNAPVVSIDSYENVPSHNEQ 121
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
              K +  +  P+SV +++    D+          +C+     HA+ +VGYG +++  +W
Sbjct: 122 SLQKAVANQ--PVSVTMDA-AGRDFQLYRSGIFTGSCN-ISANHALTVVGYGTENDKDFW 177
Query: 921 LVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 953
           +V+NSWG    + G+ + ER     +  CGI + A Y
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 972  HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 1021
            HA+ +VGYG ++D  +W+V+NSWG    + G+ + ER     +  CGI + A Y
Sbjct: 161  HALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 69
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C   Q
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 70  CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFT--GKDFLHF 126
             GC+G   + + E+  Q  G+ +E +YPY+  +G    C   K      +  G + +  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118
Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE-----TCSPYDLGHAVLLVGYG 181
           N    + K +    P+SV +      D  G+  +   E     +C   +L H V +VGYG
Sbjct: 119 NDENALLKAVANQ-PVSVAI------DAGGSDFQFYSEGVFTGSCGT-ELDHGVAIVGYG 170
Query: 182 KQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 222
              D   YW V+NSWGP   ++G+ ++ERG       CGI   A Y
Sbjct: 171 TTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 800
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C   Q
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 801 CSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFT--GKDFLHF 857
             GC+G   + + E+  Q  G+ +E +YPY+  +G    C   K      +  G + +  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118
Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE-----TCSPYDLGHAVLLVGYG 912
           N    + K +    P+SV +      D  G+  +   E     +C   +L H V +VGYG
Sbjct: 119 NDENALLKAVANQ-PVSVAI------DAGGSDFQFYSEGVFTGSCGT-ELDHGVAIVGYG 170
Query: 913 KQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 953
              D   YW V+NSWGP   ++G+ ++ERG       CGI   A Y
Sbjct: 171 TTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 969  DLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 1021
            +L H V +VGYG   D   YW V+NSWGP   ++G+ ++ERG       CGI   A Y
Sbjct: 159  ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 18/222 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
           +PD  DWR         DQ  CGS WAFS    +EG   I TG L+  S+ +LV+C +  
Sbjct: 1   LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 69  QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
              GCDG F     ++  +  G+ +E +YPY     E+ +C  D  + K  +   +  + 
Sbjct: 61  NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 126 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 183
           +N    ++  +  Y P+SV L +     YN         T  C    + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
             I YW+V+NSWG    +EG+ +I+R   G   CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 18/222 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
           +PD  DWR         DQ  CGS WAFS    +EG   I TG L+  S+ +LV+C +  
Sbjct: 1   LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
              GCDG F     ++  +  G+ +E +YPY     E+ +C  D  + K  +   +  + 
Sbjct: 61  NTRGCDGGFMTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYVSIDTYENVP 117
Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQ 914
           +N    ++  +  Y P+SV L +     YN         T  C    + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-AYQPVSVALEA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTE 172
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
             I YW+V+NSWG    +EG+ +I+R   G   CGI + A Y
Sbjct: 173 GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 972  HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
            HAV +VGYG +  I YW+V+NSWG    +EG+ +I+R   G   CGI + A Y
Sbjct: 162  HAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASY 214

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 43/315 (13%)
Query: 652 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 703
           E +++ F+++++K  + Y N +E   RFE FK +       +KK+  Y  G + F+D S 
Sbjct: 60  ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSN 119
Query: 704 EEILCK-TG-----FKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPA 757
           +E   K TG     +  +E +YE ++ D             D  +P+  DWR+K    P 
Sbjct: 120 DEFKEKYTGSIAGNYTTTELSYEEVLND------------GDVNIPEYVDWRQKGAVTPV 167
Query: 758 GDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTH 817
            +Q +CGS WAFS    +E    I+TG L E+S+ +L++C ++  GC+G +   +++   
Sbjct: 168 KNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVA 227
Query: 818 QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNGSETMKKILYKYGPLSV 875
           Q G+     YPY+    +++  + +K      T   +    +N    +  I  +  P+SV
Sbjct: 228 QYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ--PVSV 283
Query: 876 LLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDE 933
           +L +    D+    + +      P    + HAV  VGYG      Y L+RNSWG    + 
Sbjct: 284 VLEA-AGKDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIRNSWGTGWGEN 335
Query: 934 GFFKIERGN-NACGI 947
           G+ +I+RG  N+ G+
Sbjct: 336 GYIRIKRGTGNSYGV 350

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 16/223 (7%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 69
           +P + DWR+K       DQ  CGSCWAFS    +EG  AI+TG LV  S+ +L++C    
Sbjct: 4   LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 70  CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG--EKFKCAYDKSKVKLFTGKDFLHF 126
             GC G   + + EY  +  GL +E  YPY+ A G     + A +   V    G   +  
Sbjct: 64  NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPA 123
Query: 127 NGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQ 183
           N  E + + +    P+SV + +       Y+         T    +L H V +VGYG  +
Sbjct: 124 NSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAE 178
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGY 222
           D   YW V+NSWGP   ++G+ ++E+ + A    CGI   A Y
Sbjct: 179 DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASY 221

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 16/223 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC-AKQ 800
           +P + DWR+K       DQ  CGSCWAFS    +EG  AI+TG LV  S+ +L++C    
Sbjct: 4   LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 801 CSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANG--EKFKCAYDKSKVKLFTGKDFLHF 857
             GC G   + + EY  +  GL +E  YPY+ A G     + A +   V    G   +  
Sbjct: 64  NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPA 123
Query: 858 NGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQ 914
           N  E + + +    P+SV + +       Y+         T    +L H V +VGYG  +
Sbjct: 124 NSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAE 178
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGY 953
           D   YW V+NSWGP   ++G+ ++E+ + A    CGI   A Y
Sbjct: 179 DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASY 221

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 969  DLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGY 1021
            +L H V +VGYG  +D   YW V+NSWGP   ++G+ ++E+ + A    CGI   A Y
Sbjct: 164  ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASY 221

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score =  107 bits (268), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C    
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 71  SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
            GC+G +   + +Y     G++++++YPY    G    C   + +V    G   +  N  
Sbjct: 61  HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS---CKPYRLRVVSINGFQRVTRNNE 117
Query: 130 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLG----HAVLLVGYGKQDN 185
             ++  +    P+SV + +       G P +           G    H V++VGYG Q  
Sbjct: 118 SALQSAVASQ-PVSVTVEA------AGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSG 170
Query: 186 IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
             YW+VRNSWG    ++G+  +ER   +    CGI Q+  Y T
Sbjct: 171 KNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score =  107 bits (267), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C    
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
            GC+G +   + +Y     G++++++YPY    G    C   + +V    G   +  N  
Sbjct: 61  HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS---CKPYRLRVVSINGFQRVTRNNE 117
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLG----HAVLLVGYGKQDN 916
             ++  +    P+SV + +       G P +           G    H V++VGYG Q  
Sbjct: 118 SALQSAVASQ-PVSVTVEA------AGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSG 170
Query: 917 IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
             YW+VRNSWG    ++G+  +ER   +    CGI Q+  Y T
Sbjct: 171 KNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 20/134 (14%)
Query: 910  GYGKQDNIPYWLVRNSWGP----IGPDEGFFKIERGNNACGIEQIAGY-ATIDVVKNDET 964
            G   Q N PY  V+ S  P    +    GF ++ R N +     +A    ++ V      
Sbjct: 80   GIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAP 139
Query: 965  CSPYDLG-----------HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA- 1012
               Y  G           H V++VGYG Q    YW+VRNSWG    ++G+  +ER   + 
Sbjct: 140  FQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS 199
Query: 1013 ---CGIEQIAGYAT 1023
               CGI Q+  Y T
Sbjct: 200  AGLCGIAQLPSYPT 213

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 149/320 (46%), Gaps = 31/320 (9%)
Query: 652 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQD------GHKKHERY--GTSEFSDRSP 703
           E +++ F ++++   + Y N +E   RFE FK +       +KK+  Y  G +EF+D S 
Sbjct: 16  ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSN 75
Query: 704 EEILCKTGFKWSERTYERIVADRXXXXXXXXXXXXDGPVPDAWDWRKKNVTGPAGDQAAC 763
           +E   K      + T E+   +                +P+  DWRKK    P   Q +C
Sbjct: 76  DEFNEKYVGSLIDATIEQSYDEEFINEDIVN-------LPENVDWRKKGAVTPVRHQGSC 128
Query: 764 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLES 823
           GSCWAFS    +EG   I+TGKLVE S+ +LV+C ++  GC G +   ++EY  + G+  
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHL 188
Query: 824 EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIH 883
              YPYK   G           VK  +G   +  N    +   + K  P+SV++ S    
Sbjct: 189 RSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEGNLLNAIAKQ-PVSVVVESK--- 243
Query: 884 DYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIE 939
              G P +       E      +  AV  VGYGK     Y L++NSWG    ++G+ +I+
Sbjct: 244 ---GRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIK 300
Query: 940 R--GNN--ACGIEQIAGYAT 955
           R  GN+   CG+ + + Y T
Sbjct: 301 RAPGNSPGVCGLYKSSYYPT 320

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 16/218 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWRKK    P  +Q +CGSCWAFS    +E    I+TG L+  S+ +LV+C K+ 
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
            GC G  F  + +Y  +  G++++ +YPYK   G         SKV    G + + F   
Sbjct: 61  HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP----CQAASKVVSIDGYNGVPFCNE 116
Query: 861 ETMKK-ILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
             +K+ +  +   +++  +S     Y+         T     L H V +VGY  Q N  Y
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT----KLNHGVTIVGY--QAN--Y 168
Query: 920 WLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
           W+VRNSWG    ++G+ ++ R  G   CGI ++  Y T
Sbjct: 169 WIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 16/224 (7%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CG+ +AFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDVGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-K 182
             E  + K +   GP+SV +++     +    G     +  + S   L HA+L+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSS---LNHAMLVVGYGFI 173
Query: 183 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
            +N  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 SNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 16/224 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CG+ +AFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDVGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-K 913
             E  + K +   GP+SV +++     +    G     +  + S   L HA+L+VGYG  
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSS---LNHAMLVVGYGFI 173
Query: 914 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
            +N  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 174 SNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 970  LGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 1024
            L HA+L+VGYG   ++  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 161  LNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 18/222 (8%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
           +P   DWR          Q +CG CWAFS    +EG   I TG L+  S+ +L++C +  
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 69  QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 125
              GC+G +     ++  +  G+ +E++YPY   +GE   C  D    K  T   +  + 
Sbjct: 61  NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGE---CNVDLQNEKYVTIDTYENVP 117
Query: 126 FNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 183
           +N    ++  +  Y P+SV L++  D    Y+         T     + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPCGTA----IDHAVTIVGYGTE 172
Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
             I YW+V+NSW     +EG+ +I R   G   CGI  +  Y
Sbjct: 173 GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score =  103 bits (256), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 18/222 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
           +P   DWR          Q  CG CWAFS    +EG   I TG L+  S+ +L++C +  
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LH 856
              GC+G +     ++  +  G+ +E++YPY   +GE   C  D    K  T   +  + 
Sbjct: 61  NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGE---CNVDLQNEKYVTIDTYENVP 117
Query: 857 FNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 914
           +N    ++  +  Y P+SV L++  D    Y+         T     + HAV +VGYG +
Sbjct: 118 YNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPCGTA----IDHAVTIVGYGTE 172
Query: 915 DNIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
             I YW+V+NSW     +EG+ +I R   G   CGI  +  Y
Sbjct: 173 GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 970  LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
            + HAV +VGYG +  I YW+V+NSW     +EG+ +I R   G   CGI  +  Y
Sbjct: 160  IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score =  102 bits (255), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC--AK 68
           +P   DWR +    P  DQ DCGSCWAFS  G LEG +  KTGKLV  S+ +L++C  A+
Sbjct: 7   LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 69  QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
               C G     + +Y     G+ SE  YPY  A  E+ +    +  VK+   KD     
Sbjct: 67  GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL-ARDEECRAQSCEKVVKILGFKDVPRR- 124
Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--KQDN 185
            SE   K      P+S+ + +D +  +        D +C   DL H VLLVGYG  K+  
Sbjct: 125 -SEAAMKAALAKSPVSIAIEADQM-PFQFYHEGVFDASCGT-DLDHGVLLVGYGTDKESK 181
Query: 186 IPYWLVRNSWG 196
             +W+++NSWG
Sbjct: 182 KDFWIMKNSWG 192

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC--AK 799
           +P   DWR +    P  DQ  CGSCWAFS  G LEG +  KTGKLV  S+ +L++C  A+
Sbjct: 7   LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
               C G     + +Y     G+ SE  YPY  A  E+ +    +  VK+   KD     
Sbjct: 67  GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL-ARDEECRAQSCEKVVKILGFKDVPRR- 124
Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG--KQDN 916
            SE   K      P+S+ + +D +  +        D +C   DL H VLLVGYG  K+  
Sbjct: 125 -SEAAMKAALAKSPVSIAIEADQM-PFQFYHEGVFDASCGT-DLDHGVLLVGYGTDKESK 181
Query: 917 IPYWLVRNSWG 927
             +W+++NSWG
Sbjct: 182 KDFWIMKNSWG 192

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score =  102 bits (254), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 12/221 (5%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P + DWRKK       DQ ACG CWAF   G +EG  AI TG+L+  S+ Q+V+C     
Sbjct: 2   PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 803 GCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
              G   + +  +     G+ S+ +YPY   +G    C  +K       G   +  + S 
Sbjct: 62  XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDGYTNVPNSSSA 118
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS--PYDLGHAVLLVGYGKQ-DNIP 918
            +  +  +   +++  +S     Y G  I     +CS  P  + H VL+VGYG    N  
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAG-SSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 919 YWLVRNSWGPIGPDEGFFKIERGNN----ACGIEQIAGYAT 955
           YW+V+NSWG     +G+  I R  N     C I+    Y T
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 964  TCS--PYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIERGNN----ACGIE 1016
            +CS  P  + H VL+VGYG    +  YW+V+NSWG     +G+  I R  N     C I+
Sbjct: 152  SCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAID 211
Query: 1017 QIAGYAT 1023
                Y T
Sbjct: 212  AWGSYPT 218

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 14/220 (6%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 68
           +P   DWR          Q +CG  WAFS    +EG   I +G L+  S+ +L++C +  
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 69  QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GCDG +     ++  +  G+ +E++YPY   +G+      D+  V + T ++  + N
Sbjct: 61  NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 128 GSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 185
             E   +    Y P+SV L++  D    Y          T     + HA+++VGYG +  
Sbjct: 121 --EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTA----VDHAIVIVGYGTEGG 174
Query: 186 IPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 222
           + YW+V+NSW     +EG+ +I R   G   CGI  +  Y
Sbjct: 175 VDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 14/220 (6%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-- 799
           +P   DWR          Q  CG  WAFS    +EG   I +G L+  S+ +L++C +  
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 800 QCSGCDGCFFEPSIEYT-HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GCDG +     ++  +  G+ +E++YPY   +G+      D+  V + T ++  + N
Sbjct: 61  NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 859 GSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
             E   +    Y P+SV L++  D    Y          T     + HA+++VGYG +  
Sbjct: 121 --EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTA----VDHAIVIVGYGTEGG 174
Query: 917 IPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 953
           + YW+V+NSW     +EG+ +I R   G   CGI  +  Y
Sbjct: 175 VDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 972  HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
            HA+++VGYG +  + YW+V+NSW     +EG+ +I R   G   CGI  +  Y
Sbjct: 162  HAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWRKK    P   Q +CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++ 
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            GC G +   ++EY  + G+     YPYK   G           VK  +G   +  N   
Sbjct: 61  HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEG 119
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNI 917
            +   + K  P+SV++ S       G P +       E      + HAV  VGYGK    
Sbjct: 120 NLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGK 172
Query: 918 PYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 955
            Y L++NSWG    ++G+ +I+R  GN+   CG+ + + Y T
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWRKK    P   Q +CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++ 
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            GC G +   ++EY  + G+     YPYK   G           VK  +G   +  N   
Sbjct: 61  HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKT-SGVGRVQPNNEG 119
Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND----ETCSPYDLGHAVLLVGYGKQDNI 917
            +   + K  P+SV++ S       G P +       E      + HAV  VGYGK    
Sbjct: 120 NLLNAIAKQ-PVSVVVESK------GRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGK 172
Query: 918 PYWLVRNSWGPIGPDEGFFKIER--GNN--ACGIEQIAGYAT 955
            Y L++NSWG    ++G+ +I+R  GN+   CG+ + + Y T
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 22/208 (10%)
Query: 14  AWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 73
           A+DWR  +   P  DQ +CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C+ +  GC
Sbjct: 21  AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 74  DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 132
           +G     + E      G+  + DYPY   +     C  D+   K +  K++L    ++ +
Sbjct: 81  NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 136
Query: 133 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 187
           K+ L   GP  +SV ++ D      G      D  C    L HAV+LVG+G ++ +    
Sbjct: 137 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 191
Query: 188 -------YWLVRNSWGPIGPDEGFFKIE 208
                  Y++++NSWG    + GF  IE
Sbjct: 192 KKGEKHYYYIIKNSWGQQWGERGFINIE 219

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 22/208 (10%)
Query: 745 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 804
           A+DWR  +   P  DQ  CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C+ +  GC
Sbjct: 21  AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 805 DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 863
           +G     + E      G+  + DYPY   +     C  D+   K +  K++L    ++ +
Sbjct: 81  NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 136
Query: 864 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 918
           K+ L   GP  +SV ++ D      G      D  C    L HAV+LVG+G ++ +    
Sbjct: 137 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 191
Query: 919 -------YWLVRNSWGPIGPDEGFFKIE 939
                  Y++++NSWG    + GF  IE
Sbjct: 192 KKGEKHYYYIIKNSWGQQWGERGFINIE 219

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 20/211 (9%)
Query: 745 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 804
           A+DWR      P  DQA CGSCWAFS  G +E QYAI+   L  FS+ +LV+C+ + +GC
Sbjct: 23  AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 805 DGCFFEPSI-EYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 863
            G +   +  +     GL S+ DYPY +   E   C   +   + +T K ++     +  
Sbjct: 83  YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNER-YTIKSYVSIP-DDKF 138
Query: 864 KKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD------- 915
           K+ L   GP+S+ +  SD    Y G      +   +P    HAV+LVGYG +D       
Sbjct: 139 KEALRYLGPISISIAASDDFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNEDTG 194
Query: 916 ---NIPYWLVRNSWGPIGPDEGFFKIERGNN 943
                 Y++++NSWG    + G+  +E   N
Sbjct: 195 RMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 14/178 (7%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 14/178 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 10/212 (4%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           VP   D R      P   Q  CGSCWAFS     E  Y       ++ S+ +LV+CA Q 
Sbjct: 11  VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQ- 69
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            GC G      IEY  Q G+  E+ YPY      + +C    S+    +    ++    +
Sbjct: 70  HGCHGDTIPRGIEYIQQNGVVEERSYPYV---AREQRCRRPNSQHYGISNYCQIYPPDVK 126
Query: 862 TMKKILYK-YGPLSVLLN-SDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
            +++ L + +  ++V++   DL     Y+G  I ++D    P    HAV +VGYG     
Sbjct: 127 QIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGD 184
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 949
            YW+VRNSW     D G+   + GNN   IEQ
Sbjct: 185 DYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQ 216

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 946  GIEQIAGYATID---VVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEG 1002
            GI+ +  +   D   ++++D    P    HAV +VGYG      YW+VRNSW     D G
Sbjct: 144  GIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSG 201
Query: 1003 FFKIERGNNACGIEQ 1017
            +   + GNN   IEQ
Sbjct: 202  YGYFQAGNNLMMIEQ 216

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P++ DWR K    P   Q  C SCWAFS    +EG   IKTG LVE S+ +LV+C  Q 
Sbjct: 1   LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            GC+  +   S++Y  Q G+     YPY               KVK          N   
Sbjct: 61  YGCNRGYQSTSLQYVAQNGIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGS 120
Query: 862 TMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
            +  I ++  P+SV++ S      +Y G     +  T     + HAV  VGYGK     Y
Sbjct: 121 LLNAIAHQ--PVSVVVESAGRDFQNYKGGIFEGSCGT----KVDHAVTAVGYGKSGGKGY 174
Query: 920 WLVRNSWGPIGPDEGFFKIER--GNN--ACGI 947
            L++NSWGP   + G+ +I R  GN+   CG+
Sbjct: 175 ILIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 22/208 (10%)
Query: 14  AWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 73
           A+DWR  +   P  DQ +CGS WAFS  G +E QYAI+  KL+  S+ +LV+C+ +  GC
Sbjct: 20  AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 74  DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 132
           +G     + E      G+  + DYPY   +     C  D+   K +  K++L    ++ +
Sbjct: 80  NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 135
Query: 133 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 187
           K+ L   GP  +SV ++ D      G      D  C    L HAV+LVG+G ++ +    
Sbjct: 136 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 190
Query: 188 -------YWLVRNSWGPIGPDEGFFKIE 208
                  Y++++NSWG    + GF  IE
Sbjct: 191 KKGEKHYYYIIKNSWGQQWGERGFINIE 218

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 22/208 (10%)
Query: 745 AWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGC 804
           A+DWR  +   P  DQ  CGS WAFS  G +E QYAI+  KL+  S+ +LV+C+ +  GC
Sbjct: 20  AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 805 DGCFFEPSIE-YTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETM 863
           +G     + E      G+  + DYPY   +     C  D+   K +  K++L    ++ +
Sbjct: 80  NGGLINNAFEDMIELGGICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-L 135
Query: 864 KKILYKYGP--LSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP--- 918
           K+ L   GP  +SV ++ D      G      D  C    L HAV+LVG+G ++ +    
Sbjct: 136 KEALRFLGPISISVAVSDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLT 190
Query: 919 -------YWLVRNSWGPIGPDEGFFKIE 939
                  Y++++NSWG    + GF  IE
Sbjct: 191 KKGEKHYYYIIKNSWGQQWGERGFINIE 218

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR+K    P  +Q +CGSCWAFS    +EG   I+TG L E+S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
            GC+G +   +++   Q G+     YPY+    +++  + +K      T   +    +N 
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
              +  I  +  P+SV+L +    D+    + +      P    + HAV  VGYG     
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
            Y L++NSWG    + G+ +I+RG  N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR+K    P  +Q +CGSCWAFS    +EG   I+TG L ++S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
            GC+G +   +++   Q G+     YPY+    +++  + +K      T   +    +N 
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
              +  I  +  P+SV+L +    D+    + +      P    + HAV  VGYG     
Sbjct: 119 GALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
            Y L++NSWG    + G+ +I+RG  N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 68
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 69  QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 128 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 181
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA--K 799
            P + DWR+K    P  +Q  CGS WAFS  G LEGQ   KTG+L+  S+  LV+C+  +
Sbjct: 1   APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 800 QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G   + + +Y     GL+SE+ YPY+     +  C Y+  K  +     F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIP 116
Query: 859 GSE-TMKKILYKYGPLSVLLNS---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 912
             E  + K +   GP+SV +++     +    G     +   CS  D+ H VL+VGYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P+  DWR+K    P  +Q +CGSCWAFS    +EG   I+TG L ++S+ +L++C ++  
Sbjct: 2   PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNGS 860
           GC+G +   +++   Q G+     YPY+    +++  + +K      T   +    +N  
Sbjct: 62  GCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 861 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNIP 918
             +  I  +  P+SV+L +    D+    + +      P    + HAV  VGYG      
Sbjct: 120 ALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN---- 169
Query: 919 YWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
           Y L++NSWG    + G+ +I+RG  N+ G+
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR+K    P  +Q +CGS WAFS    +EG   I+TG L E+S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
            GC+G +   +++   Q G+     YPY+    +++  + +K      T   +    +N 
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
              +  I  +  P+SV+L +    D+    + +      P    + HAV  VGYG     
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
            Y L++NSWG    + G+ +I+RG  N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR+K    P  +Q +CGS WAFS    +EG   I+TG L ++S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
            GC+G +   +++   Q G+     YPY+    +++  + +K      T   +    +N 
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
              +  I  +  P+SV+L +    D+    + +      P    + HAV  VGYG     
Sbjct: 119 GALLYSIANQ--PVSVVLQAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
            Y L++NSWG    + G+ +I+RG  N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 16/212 (7%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P + DWR+K    P  +Q  CGSCW FS    +EG   I TG+L+  S+ +L++C ++ 
Sbjct: 1   IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            GC G F   +++Y   +G+   + YPY+    +         KVK          N   
Sbjct: 61  YGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQA 120
Query: 862 TMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
            +++I  +  P+S+++ +      +Y G        T     + HAV  VGYG      Y
Sbjct: 121 LIQRIAIQ--PVSIVVEAKGRAFQNYRGGIFAGPCGT----SIDHAVAAVGYGND----Y 170
Query: 920 WLVRNSWGPIGPDEGFFKIERGN----NACGI 947
            L++NSWG    + G+ +I+RG+     ACG+
Sbjct: 171 ILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 740 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 794
            P+P ++D    W          DQ+ACGSCWA + A  +  ++    G + V  S   L
Sbjct: 70  APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 129
Query: 795 VECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG---------E 835
           + C   C  GC+G   + +  Y    GL S+   PY         K+ NG         +
Sbjct: 130 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 189
Query: 836 KFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR 891
             KC Y  D   + +   + +  +   G +   + L+  GP  V    D+  D+      
Sbjct: 190 TPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYEDFIAYNSG 247
Query: 892 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 951
                   Y  GHAV LVG+G  + +PYW + NSW      +G+F I RG++ CGIE   
Sbjct: 248 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED-G 306
Query: 952 GYATIDVVKN 961
           G A I +  N
Sbjct: 307 GSAGIPLAPN 316

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
            GHAV LVG+G  + +PYW + NSW      +G+F I RG++ CGIE
Sbjct: 259  GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 304

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR+K    P  +Q +CGS WAFS    +EG   I+TG L ++S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTG--KDFLHFNG 859
            GC+G +   +++   Q G+     YPY+    +++  + +K      T   +    +N 
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGV--QRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP--YDLGHAVLLVGYGKQDNI 917
              +  I  +  P+SV+L +    D+    + +      P    + HAV  VGYG     
Sbjct: 119 GALLYSIANQ--PVSVVLEAAG-KDFQ---LYRGGIFVGPCGNKVDHAVAAVGYGPN--- 169
Query: 918 PYWLVRNSWGPIGPDEGFFKIERGN-NACGI 947
            Y L++NSWG    + G+ +I+RG  N+ G+
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 740 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 794
            P+P ++D    W          DQ+ACGSCWA + A  +  ++    G + V  S   L
Sbjct: 69  APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 128
Query: 795 VECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG---------E 835
           + C   C  GC+G   + +  Y    GL S+   PY         K+ NG         +
Sbjct: 129 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 188
Query: 836 KFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR 891
             KC Y  D   + +   + +  +   G +   + L+  GP  V    D+  D+      
Sbjct: 189 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYEDFIAYNSG 246
Query: 892 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 951
                   Y  GHAV LVG+G  + +PYW + NSW      +G+F I RG++ CGIE   
Sbjct: 247 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED-G 305
Query: 952 GYATIDVVKN 961
           G A I +  N
Sbjct: 306 GSAGIPLAPN 315

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
            GHAV LVG+G  + +PYW + NSW      +G+F I RG++ CGIE
Sbjct: 258  GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 303

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 740 GPVPDAWD----WRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQL 794
            P+P ++D    W          DQ+ACGSCWA + A  +  ++    G + V  S   L
Sbjct: 92  APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 151
Query: 795 VECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPY---------KNANG---------E 835
           + C   C  GC+G   + +  Y    GL S+   PY         K+ NG         +
Sbjct: 152 LACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 211
Query: 836 KFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIR 891
             KC Y  D   + +   + +  +   G +   + L+  GP  V    D+  D+      
Sbjct: 212 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYEDFIAYNSG 269
Query: 892 KNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIA 951
                   Y  GHAV LVG+G  + +PYW + NSW      +G+F I RG++ CGIE   
Sbjct: 270 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED-G 328
Query: 952 GYATIDVVKN 961
           G A I +  N
Sbjct: 329 GSAGIPLAPN 338

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
            GHAV LVG+G  + +PYW + NSW      +G+F I RG++ CGIE
Sbjct: 281  GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 326

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 50/250 (20%)
Query: 11  VPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 64
           +P ++D RKK           DQ+ CGSCWAF     +  +  I++G  + VE S   L+
Sbjct: 3   IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 65  ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKD---------YPY---------------- 98
            C + C  GC+G    P+ +Y  + G+ +            YP+                
Sbjct: 63  SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 99  --------KNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSV--LLN 147
                   K    +K+K  Y + K +   GK   +  N  + ++K + KYGP+     + 
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHR---GKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 148 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 207
            D ++  +G       ET      GHA+ ++G+G ++  PYWL+ NSW     + G+F+I
Sbjct: 180 EDFLNYKSGIYKHITGETLG----GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI 235
Query: 208 ERGNNACGIE 217
            RG + C IE
Sbjct: 236 VRGRDECSIE 245

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 50/250 (20%)
Query: 742 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 795
           +P ++D RKK           DQ+ CGSCWAF     +  +  I++G  + VE S   L+
Sbjct: 3   IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 796 ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKD---------YPY---------------- 829
            C + C  GC+G    P+ +Y  + G+ +            YP+                
Sbjct: 63  SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 830 --------KNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSV--LLN 878
                   K    +K+K  Y + K +   GK   +  N  + ++K + KYGP+     + 
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHR---GKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 879 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 938
            D ++  +G       ET      GHA+ ++G+G ++  PYWL+ NSW     + G+F+I
Sbjct: 180 EDFLNYKSGIYKHITGETLG----GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI 235
Query: 939 ERGNNACGIE 948
            RG + C IE
Sbjct: 236 VRGRDECSIE 245

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIE 1016
            GHA+ ++G+G ++  PYWL+ NSW     + G+F+I RG + C IE
Sbjct: 200  GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIE 245

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
           +P+++D R++    P      DQ +CGSCWAF     +  +  I T G++ VE S   L+
Sbjct: 1   LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 796 ECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEKFKCA 840
            C   QC  GC+G +   +  +  + GL S   Y       PY       + NG +  C 
Sbjct: 61  TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 841 YD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLLNSDL 881
            +               +  K      +  ++ S++ K+I+   YK GP+  +  + SD 
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 180
Query: 882 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG 941
           +   +G    +  +       GHA+ ++G+G ++ +PYWLV NSW     D GFFKI RG
Sbjct: 181 LTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 236
Query: 942 NNACGIEQ 949
            N CGIE 
Sbjct: 237 ENHCGIES 244

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
            GHA+ ++G+G ++ +PYWLV NSW     D GFFKI RG N CGIE 
Sbjct: 198  GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
           +P+++D R++    P      DQ +CGSCWAF     +  +  I T G++ VE S   L+
Sbjct: 7   LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 796 ECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEKFKCA 840
            C   QC  GC+G +   +  +  + GL S   Y       PY       + NG +  C 
Sbjct: 67  TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 126
Query: 841 YD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLLNSDL 881
            +               +  K      +  ++ S++ K+I+   YK GP+  +  + SD 
Sbjct: 127 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 186
Query: 882 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG 941
           +   +G    +  +       GHA+ ++G+G ++ +PYWLV NSW     D GFFKI RG
Sbjct: 187 LTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 242
Query: 942 NNACGIEQ 949
            N CGIE 
Sbjct: 243 ENHCGIES 250

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
            GHA+ ++G+G ++ +PYWLV NSW     D GFFKI RG N CGIE 
Sbjct: 204  GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
           +G  P   D R+     P   Q  CGSCWAFS     E  Y     + ++ ++ +LV+CA
Sbjct: 7   NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 851
            Q  GC G      IEY    G+  E  Y Y       +  N ++F  +   +  +++  
Sbjct: 67  SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 852 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 908
                 N ++  + +   +  ++V++   + D    Y+G  I + D    P    HAV +
Sbjct: 123 ------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 909 VGYGKQDNIPYWLVRNSWGPIGPDEGF 935
           VGY     + YW+VRNSW     D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
           +G  P   D R+     P   Q  CGSCWAFS     E  Y     + ++ ++ +LV+CA
Sbjct: 7   NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA 66
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 851
            Q  GC G      IEY    G+  E  Y Y       +  N ++F  +   +  +++  
Sbjct: 67  SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 852 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 908
                 N ++  + +   +  ++V++   + D    Y+G  I + D    P    HAV +
Sbjct: 123 ------NVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 909 VGYGKQDNIPYWLVRNSWGPIGPDEGF 935
           VGY     + YW+VRNSW     D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
           +G  P   D R+     P   Q  CGS WAFS     E  Y     + ++ ++ +LV+CA
Sbjct: 87  NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA 146
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF- 857
            Q  GC G      IEY    G+  E  Y Y      +  C   +   + F   ++    
Sbjct: 147 SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYV---AREQSCR--RPNAQRFGISNYCQIY 200
Query: 858 --NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 912
             N ++  + +   +  ++V++   + D    Y+G  I + D    P    HAV +VGY 
Sbjct: 201 PPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYS 258
Query: 913 KQDNIPYWLVRNSWGPIGPDEGF 935
               + YW+VRNSW     D G+
Sbjct: 259 NAQGVDYWIVRNSWDTNWGDNGY 281

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 44/248 (17%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
           +P+++D R++    P      DQ +CGS WAF     +  +  I T G++ VE S   L+
Sbjct: 63  LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 122
Query: 796 ECAK-QCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PY------KNANGEKFKCA 840
            C   QC  GC+G +   +  +  + GL S   Y       PY       + NG +  C 
Sbjct: 123 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 182
Query: 841 YD--------------KSKVKLFTGKDFLHFNGSETMKKIL---YKYGPL--SVLLNSDL 881
            +               +  K      +  ++ S++ K+I+   YK GP+  +  + SD 
Sbjct: 183 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 242
Query: 882 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG 941
           +   +G    +  +       GHA+ ++G+G ++ +PYWLV NSW     D GFFKI RG
Sbjct: 243 LTYKSGVYKHEAGDVMG----GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 298
Query: 942 NNACGIEQ 949
            N CGIE 
Sbjct: 299 ENHCGIES 306

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
            GHA+ ++G+G ++ +PYWLV NSW     D GFFKI RG N CGIE 
Sbjct: 260  GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 739 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 798
           +G  P   D R+     P   Q  CGS WAFS     E  Y     + ++ ++ +LV+CA
Sbjct: 7   NGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCA 66
Query: 799 KQCSGCDGCFFEPSIEYTHQAGLESEKDYPY-------KNANGEKFKCAYDKSKVKLFTG 851
            Q  GC G      IEY    G+  E  Y Y       +  N ++F  +   +  +++  
Sbjct: 67  SQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGIS---NYCQIYPP 122
Query: 852 KDFLHFNGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 908
                 N ++  + +   +  ++V++   + D    Y+G  I + D    P    HAV +
Sbjct: 123 ------NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNI 174
Query: 909 VGYGKQDNIPYWLVRNSWGPIGPDEGF 935
           VGY     + YW+VRNSW     D G+
Sbjct: 175 VGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
           DQ +CGSCWAF     +  +  I T   V    S    L  C   C  GC+G +   +  
Sbjct: 85  DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 144
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
           +  + GL S   Y       PY       + NG +  C  +    K           T K
Sbjct: 145 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 204
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
              H+        N  + +   +YK GP+  +  + SD +   +G       E       
Sbjct: 205 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 260
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 261  GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 42/243 (17%)
Query: 28  DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 83
           DQ  CGSCWAF     +  +  I T   V    S    L  C   C  GC+G +   +  
Sbjct: 23  DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 82
Query: 84  YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 121
           +  + GL S   Y       PY       + NG +  C  +    K           T K
Sbjct: 83  FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 142
Query: 122 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
              H+        N  + +   +YK GP+  +  + SD +   +G       E       
Sbjct: 143 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 198
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATIDVVI 229
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D   
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYW 258
Query: 230 QRL 232
           +++
Sbjct: 259 EKI 261

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
           DQ +CGSCWAF     +  +  I T   V    S    L  C   C  GC+G +   +  
Sbjct: 23  DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 82
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
           +  + GL S   Y       PY       + NG +  C  +    K           T K
Sbjct: 83  FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 142
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
              H+        N  + +   +YK GP+  +  + SD +   +G       E       
Sbjct: 143 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 198
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 255

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 199  GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 255

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
           DQ +CGSCWAF     +  +  I T   V    S    L  C   C  GC+G +   +  
Sbjct: 24  DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 83
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
           +  + GL S   Y       PY       + NG +  C  +    K           T K
Sbjct: 84  FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 143
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
              H+        N  + +   +YK GP+  +  + SD +   +G       E       
Sbjct: 144 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 199
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 200  GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
           DQ +CGSCWAF     +  +  I T   V    S    L  C   C  GC+G +   +  
Sbjct: 22  DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 81
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
           +  + GL S   Y       PY       + NG +  C  +    K           T K
Sbjct: 82  FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 141
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
              H+        N  + +   +YK GP+  +  + SD +   +G       E       
Sbjct: 142 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 197
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 198  GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 98/243 (40%), Gaps = 42/243 (17%)
Query: 28  DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 83
           DQ  CGS WAF     +  +  I T   V    S    L  C   C  GC+G +   +  
Sbjct: 28  DQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 87
Query: 84  YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 121
           +  + GL S   Y       PY       + NG +  C  +    K           T K
Sbjct: 88  FWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYK 147
Query: 122 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 171
              H+        N  + +   +YK GP+  +  + SD +   +G       E       
Sbjct: 148 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 203
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATIDVVI 229
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D   
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYW 263
Query: 230 QRL 232
           +++
Sbjct: 264 EKI 266

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 96/237 (40%), Gaps = 42/237 (17%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQ---LVECAKQCS-GCDGCFFEPSIE 814
           DQ +CGS WAF     +  +  I T   V    S    L  C   C  GC+G +   +  
Sbjct: 28  DQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 87
Query: 815 YTHQAGLESEKDY-------PYK------NANGEKFKCAYDKSKVKLF---------TGK 852
           +  + GL S   Y       PY       + NG +  C  +    K           T K
Sbjct: 88  FWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYK 147
Query: 853 DFLHF--------NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDL 902
              H+        N  + +   +YK GP+  +  + SD +   +G       E       
Sbjct: 148 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMG---- 203
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 260

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 204  GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 260

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 25/218 (11%)
Query: 742 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK---TGKLVEFSKS 792
           +P +WDWR        ++T        CGSCWA +    +  +  IK          S  
Sbjct: 1   LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 793 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE-----------KFKCAY 841
            +++C    S C+G       +Y HQ G+  E    Y+  + E           +FK  +
Sbjct: 61  NVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 119
Query: 842 DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPY 900
                 L+   D+   +G E M   +Y  GP+S  ++ ++ + +Y G    +  +T    
Sbjct: 120 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 177
Query: 901 DLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 938
            + H V + G+G  D   YW+VRNSWG    + G+ +I
Sbjct: 178 -INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 25/218 (11%)
Query: 742 VPDAWDWRK------KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK---TGKLVEFSKS 792
           +P +WDWR        ++T        CGSCWA +    +  +  IK          S  
Sbjct: 36  LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 793 QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE-----------KFKCAY 841
            +++C    S C+G       +Y HQ G+  E    Y+  + E           +FK  +
Sbjct: 96  NVIDCGNAGS-CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 154
Query: 842 DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPY 900
                 L+   D+   +G E M   +Y  GP+S  ++ ++ + +Y G    +  +T    
Sbjct: 155 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY-- 212
Query: 901 DLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKI 938
            + H V + G+G  D   YW+VRNSWG    + G+ +I
Sbjct: 213 -INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 46/249 (18%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
           +P+++D R++    P      DQ +CGSCWAF     +  +  I + G++ VE S   ++
Sbjct: 1   LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 796 ECAKQCSGCDGCFFEPSIEYTH--QAGLESEKDY-------PYK------NANGEKFKCA 840
            C     G      EPS  +    + GL S   Y       PY       + NG +  C 
Sbjct: 61  TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 841 YDKSKVKLF---------TGKDFLHF---------NGSETMKKILYKYGPL--SVLLNSD 880
            +    K           + K+  HF         N  E M +I YK GP+  +  + SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSD 179
Query: 881 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 940
            +   +G     + E       GHA+ ++G+G ++  PYWLV NSW     D GFFKI R
Sbjct: 180 FLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
Query: 941 GNNACGIEQ 949
           G + CGIE 
Sbjct: 236 GQDHCGIES 244

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE 
Sbjct: 198  GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244

>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 164

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
Query: 742 VPDAWDWRKK---NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKT--GKLVEFSKSQLVE 796
           +P +WDWR     N   P  +QA+CGSC++F+  GMLE +  I T   +    S  ++V 
Sbjct: 1   LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 797 CAKQCSGCDGCF-FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 855
           C++   GC+G F +  + +Y    GL  E  +PY    G    C   +   + ++ +   
Sbjct: 61  CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--Y 115
Query: 856 HFNG-------SETMKKILYKYGPLSVLLN--SDLIH 883
           H+ G          MK  L  +GP++V      D +H
Sbjct: 116 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 152

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 46/249 (18%)
Query: 742 VPDAWDWRKKNVTGPA----GDQAACGSCWAFSIAGMLEGQYAIKT-GKL-VEFSKSQLV 795
           +P+++D R++    P      DQ +CGSCWAF     +  +  I + G++ VE S   ++
Sbjct: 1   LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 796 ECAKQCSGCDGCFFEPSIEYTH--QAGLESEKDY-------PYK------NANGEKFKCA 840
            C     G       PS  +    + GL S   Y       PY       + NG +  C 
Sbjct: 61  TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 841 YDKSKVKLF---------TGKDFLHF---------NGSETMKKILYKYGPL--SVLLNSD 880
            +    K           + K+  HF         N  E M +I YK GP+  +  + SD
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSD 179
Query: 881 LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER 940
            +   +G     + E       GHA+ ++G+G ++  PYWLV NSW     D GFFKI R
Sbjct: 180 FLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 235
Query: 941 GNNACGIEQ 949
           G + CGIE 
Sbjct: 236 GQDHCGIES 244

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE 
Sbjct: 198  GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 167 SPYDL-GHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 223
           +P++L  HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C IE IA  A
Sbjct: 4   NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 224 T 224
           T
Sbjct: 64  T 64

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 898 SPYDL-GHAVLLVGYGKQD--NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 954
           +P++L  HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C IE IA  A
Sbjct: 4   NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 955 T 955
           T
Sbjct: 64  T 64

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 966  SPYDL-GHAVLLVGYGKQD--DIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYA 1022
            +P++L  HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C IE IA  A
Sbjct: 4    NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 1023 T 1023
            T
Sbjct: 64   T 64

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 172 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 226
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 957
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ--IAGYATID 1025
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE   +AG    D
Sbjct: 149  GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 127 NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
           N  E M +I YK GP+  +  + SD +   +G     + E       GHA+ ++G+G ++
Sbjct: 108 NEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVEN 162
Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 218
             PYWLV NSW     D GFFKI RG + CGIE 
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 858 NGSETMKKILYKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 915
           N  E M +I YK GP+  +  + SD +   +G     + E       GHA+ ++G+G ++
Sbjct: 108 NEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVEN 162
Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 949
             PYWLV NSW     D GFFKI RG + CGIE 
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 971  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQ 1017
            GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CGIE 
Sbjct: 150  GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 28  DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 84
           DQ +C + W F+    LE    +K  +  + S   +  C K      CD G      ++ 
Sbjct: 26  DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 85
Query: 85  THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 123
               G L +E +YPY     GE+               K  ++K++     GK +     
Sbjct: 86  IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 145
Query: 124 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 178
              H N    +K I   +   G +   + ++ +  Y  +  +K    C      HAV +V
Sbjct: 146 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVQNLCGDDTADHAVNIV 204
Query: 179 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 227
           GYG   N       YW+VRNSWGP   DEG+FK++  G   C    I      +V
Sbjct: 205 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 259

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 91/235 (38%), Gaps = 36/235 (15%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 815
           DQ  C + W F+    LE    +K  +  + S   +  C K      CD G      ++ 
Sbjct: 26  DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 85
Query: 816 THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 854
               G L +E +YPY     GE+               K  ++K++     GK +     
Sbjct: 86  IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 145
Query: 855 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 909
              H N    +K I   +   G +   + ++ +  Y  +  +K    C      HAV +V
Sbjct: 146 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVQNLCGDDTADHAVNIV 204
Query: 910 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 958
           GYG   N       YW+VRNSWGP   DEG+FK++  G   C    I      +V
Sbjct: 205 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 259

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 972  HAVLLVGYGKQ-----DDIPYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATID 1025
            HAV +VGYG       +   YW+VRNSWGP   DEG+FK++  G   C    I      +
Sbjct: 199  HAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFN 258
Query: 1026 V 1026
            V
Sbjct: 259  V 259

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 28  DQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 84
           DQ +C + W F+    LE    +K  +  + S   +  C K      CD G      ++ 
Sbjct: 27  DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86
Query: 85  THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 123
               G L +E +YPY     GE+               K  ++K++     GK +     
Sbjct: 87  IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 146
Query: 124 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 178
              H N    +K I   +   G +   + ++ +  Y  +  +K    C      HAV +V
Sbjct: 147 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVKNLCGDDTADHAVNIV 205
Query: 179 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 227
           GYG   N       YW+VRNSWGP   DEG+FK++  G   C    I      +V
Sbjct: 206 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 91/235 (38%), Gaps = 36/235 (15%)
Query: 759 DQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCD-GCFFEPSIEY 815
           DQ  C + W F+    LE    +K  +  + S   +  C K      CD G      ++ 
Sbjct: 27  DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86
Query: 816 THQAG-LESEKDYPYKNAN-GEKF--------------KCAYDKSKVKLFTGKDF----- 854
               G L +E +YPY     GE+               K  ++K++     GK +     
Sbjct: 87  IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYES 146
Query: 855 --LHFNGSETMKKI---LYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV 909
              H N    +K I   +   G +   + ++ +  Y  +  +K    C      HAV +V
Sbjct: 147 ERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-KKVKNLCGDDTADHAVNIV 205
Query: 910 GYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGIEQIAGYATIDV 958
           GYG   N       YW+VRNSWGP   DEG+FK++  G   C    I      +V
Sbjct: 206 GYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 948  EQIAGYA-TIDVVKNDETCSPYDLGHAVLLVGYGKQ-----DDIPYWLVRNSWGPIGPDE 1001
            E + GY  +   VKN   C      HAV +VGYG       +   YW+VRNSWGP   DE
Sbjct: 177  ENVMGYEFSGKKVKN--LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDE 234
Query: 1002 GFFKIER-GNNACGIEQIAGYATIDV 1026
            G+FK++  G   C    I      +V
Sbjct: 235  GYFKVDMYGPTHCHFNFIHSVVIFNV 260

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1026
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	1e-68
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	2e-67
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	3e-59
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	2e-19
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	1e-68
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	5e-68
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	9e-60
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	1e-17
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	1e-68
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	1e-67
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	4e-59
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	1e-18
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	2e-67
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	3e-67
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	4e-67
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	2e-22
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	2e-66
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	5e-66
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	4e-59
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	9e-18
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	2e-66
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	8e-66
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	6e-58
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	2e-17
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	3e-64
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	3e-64
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	1e-63
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	6e-21
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	6e-64
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	2e-62
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	2e-54
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	7e-16
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	5e-63
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	2e-62
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	7e-54
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	1e-14
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	5e-63
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	2e-62
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	9e-55
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	6e-16
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	2e-61
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	3e-61
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	8e-60
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	3e-20
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	8e-60
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	5e-59
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	2e-55
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	2e-19
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	1e-58
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	4e-58
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	6e-58
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	3e-17
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	2e-58
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	3e-58
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	1e-57
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	3e-18
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	1e-57
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	2e-57
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	4e-57
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	1e-18
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	1e-56
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	2e-55
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	5e-55
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	7e-21
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	3e-56
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	1e-54
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	2e-54
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	2e-16
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	6e-56
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	7e-56
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	7e-55
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	5e-16
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	6e-55
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	3e-54
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	4e-54
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	1e-16
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	1e-54
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	3e-54
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	4e-54
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	1e-14
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	2e-54
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	1e-53
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	1e-53
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	5e-14
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	2e-54
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	3e-54
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	3e-53
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	8e-15
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	6e-54
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	7e-54
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	4e-53
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	5e-14
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	2e-53
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	5e-53
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	2e-52
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	2e-53
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	3e-53
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	2e-52
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	2e-15
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	3e-53
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	3e-53
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	1e-52
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	7e-15
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	4e-53
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	4e-53
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	3e-52
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-13
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	1e-52
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	1e-52
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	9e-52
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	6e-14
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	4e-52
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	1e-51
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	1e-51
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	3e-14
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	4e-51
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	4e-51
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	5e-51
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	4e-15
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	5e-51
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	6e-51
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	1e-50
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	2e-18
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	1e-50
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	1e-50
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	3e-49
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	4e-10
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	2e-49
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	2e-49
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	8e-49
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	3e-21
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	2e-49
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	2e-49
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	2e-49
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	3e-13
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	2e-49
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	6e-49
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	2e-48
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	2e-20
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	2e-49
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	3e-49
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	4e-49
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	5e-22
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	3e-49
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	4e-49
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	5e-49
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	1e-13
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	3e-48
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	3e-48
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	6e-47
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	2e-10
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-46
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	3e-45
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	6e-45
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	3e-12
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	1e-07
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	2e-07
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	4e-06
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	1e-05
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	1e-05

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  231 bits (591), Expect = 1e-68
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 27/320 (8%)

Query: 653 NILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGTSEFSDRSPEEIL 707
           + ++TF+ +     + YA  E+ +   + F +       +        +  SD S +E  
Sbjct: 3   SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG----AINHLSDLSLDEFK 58

Query: 708 CK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSC 766
            +      +    +     +  +         +G  P   D R+     P   Q  CGS 
Sbjct: 59  NRFLMSAEAFEHLKT----QFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114

Query: 767 WAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKD 826
           WAFS     E  Y     + ++ ++ +LV+CA Q  GC G      IEY    G+  E  
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVVQESY 173

Query: 827 YPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYK-YGPLSVLLNSDLIHD- 884
           Y Y         C    ++    +    ++   +  +++ L + +  ++V++    +   
Sbjct: 174 YRYVAREQ---SCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF 230

Query: 885 --YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN 942
             Y+G  I             HAV +VGY     + YW+VRNSW     D G+       
Sbjct: 231 RHYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANI 288

Query: 943 NACGIEQIAGYATIDVVKND 962
           +      I  Y  + ++   
Sbjct: 289 DLMM---IEEYPYVVILGQT 305

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  228 bits (583), Expect = 2e-67
 Identities = 63/320 (19%), Positives = 110/320 (34%), Gaps = 35/320 (10%)

Query: 287 NILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGTSEFSDRSPEEIL 341
           + ++TF+ +     + YA  E+ +   + F +       +        +  SD S +E  
Sbjct: 3   SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG----AINHLSDLSLDEFK 58

Query: 342 CK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSC 400
            +      +    +     +  +         +G  P   D R+     P   Q  CGS 
Sbjct: 59  NRFLMSAEAFEHLKT----QFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114

Query: 401 WAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESE 459
           WAFS     E  Y     + ++ ++ +LV+CA Q  GC G      + IEY    G+  E
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-HGCHG--DTIPRGIEYIQHNGVVQE 171

Query: 460 KDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET--MKKILYKYGPLSVGLN- 513
             Y Y         C    ++    +     Y      +     + +   +  ++V +  
Sbjct: 172 SYYRYVAREQ---SCRRPNAQRFGISN----YCQIYPPNANKIREALAQTHSAIAVIIGI 224

Query: 514 SHLI--HFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFF 571
             L     Y+G  I             HAV +VGY     + YW+ RNSW     D G+ 
Sbjct: 225 KDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYG 282

Query: 572 KIERGNNACGIEQIAGYATI 591
                 +   IE+      +
Sbjct: 283 YFAANIDLMMIEEYPYVVIL 302

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  204 bits (522), Expect = 3e-59
 Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 6   EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
             +G  P   D R+     P   Q  CGS WAFS     E  Y     + ++ ++ +LV+
Sbjct: 85  SINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVD 144

Query: 66  CAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 125
           CA Q  GC G      IEY    G+  E  Y Y         C    ++    +    ++
Sbjct: 145 CASQ-HGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQRFGISNYCQIY 200

Query: 126 FNGSETMKKILYK-YGPLSVLLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYG 181
              +  +++ L + +  ++V++    +     Y+G  I             HAV +VGY 
Sbjct: 201 PPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYS 258

Query: 182 KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
               + YW+VRNSW     D G+       +   IE+      +
Sbjct: 259 NAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 302

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 89.2 bits (222), Expect = 2e-19
 Identities = 17/66 (25%), Positives = 24/66 (36%)

Query: 959  VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
                         HAV +VGY     + YW+VRNSW     D G+       +   IE+ 
Sbjct: 237  TIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEY 296

Query: 1019 AGYATI 1024
                 +
Sbjct: 297  PYVVIL 302

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  231 bits (592), Expect = 1e-68
 Identities = 91/322 (28%), Positives = 144/322 (44%), Gaps = 37/322 (11%)

Query: 290 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 337
           E +  F +   + Y++  E   R   FK        H  K E+   +      +F D S 
Sbjct: 25  EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84

Query: 338 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 397
           EE      F  +     +    +      +  V    P+  + DWR   V+    DQ  C
Sbjct: 85  EE------FL-AYVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSNAVS-EVKDQGQC 136

Query: 398 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAG 455
           GS W+FS  G +EGQ A++ G+L   S+  L++C+    G  GCDG  ++    Y H  G
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSY-GNAGCDGGWMDSAFSYIHDYG 195

Query: 456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVG 511
           + SE  YPY     +   C +D S+          Y++   G E  +   + + GP++V 
Sbjct: 196 IMSESAYPYE---AQGDYCRFDSSQS---VTTLSGYYDLPSGDENSLADAVGQAGPVAVA 249

Query: 512 LN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 570
           ++ +  + FY+G      D+TC+  DL H VL+VGYG  +   YW+ +NSWG    + G+
Sbjct: 250 IDATDELQFYSGGLF--YDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGY 307

Query: 571 FKIERG-NNACGIEQIAGYATI 591
           ++  R   N CGI   A Y  +
Sbjct: 308 WRQVRNYGNNCGIATAASYPAL 329

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  230 bits (588), Expect = 5e-68
 Identities = 89/318 (27%), Positives = 145/318 (45%), Gaps = 30/318 (9%)

Query: 656 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 703
           E +  F +   + Y++  E   R   FK        H  K E+   +      +F D S 
Sbjct: 25  EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84

Query: 704 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 763
           EE      F  +     +    +      +  V    P+  + DWR   V+    DQ  C
Sbjct: 85  EE------FL-AYVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSNAVS-EVKDQGQC 136

Query: 764 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC--SGCDGCFFEPSIEYTHQAGL 821
           GS W+FS  G +EGQ A++ G+L   S+  L++C+     +GCDG + + +  Y H  G+
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGI 196

Query: 822 ESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN-S 879
            SE  YPY+        C +D S+     +G   L      ++   + + GP++V ++ +
Sbjct: 197 MSESAYPYEAQGD---YCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDAT 253

Query: 880 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIE 939
           D +  Y+G      D+TC+  DL H VL+VGYG  +   YW+++NSWG    + G+++  
Sbjct: 254 DELQFYSGGLF--YDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQV 311

Query: 940 RG-NNACGIEQIAGYATI 956
           R   N CGI   A Y  +
Sbjct: 312 RNYGNNCGIATAASYPAL 329

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  207 bits (528), Expect = 9e-60
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 11/226 (4%)

Query: 5   VEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 64
           V    P+  + DWR   V+    DQ  CGS W+FS  G +EGQ A++ G+L   S+  L+
Sbjct: 110 VSSKKPLAASVDWRSNAVS-EVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLI 168

Query: 65  ECAKQC--SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGK 121
           +C+     +GCDG + + +  Y H  G+ SE  YPY+        C +D S+     +G 
Sbjct: 169 DCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYEAQGD---YCRFDSSQSVTTLSGY 225

Query: 122 DFLHFNGSETMKKILYKYGPLSVLLN-SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGY 180
             L      ++   + + GP++V ++ +D +  Y+G      D+TC+  DL H VL+VGY
Sbjct: 226 YDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLF--YDQTCNQSDLNHGVLVVGY 283

Query: 181 GKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           G  +   YW+++NSWG    + G+++  R   N CGI   A Y  +
Sbjct: 284 GSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPAL 329

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 84.6 bits (210), Expect = 1e-17
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
             D+TC+  DL H VL+VGYG  +   YW+++NSWG    + G+++  R   N CGI   A
Sbjct: 265  YDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAA 324

Query: 1020 GYATI 1024
             Y  +
Sbjct: 325  SYPAL 329

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  231 bits (592), Expect = 1e-68
 Identities = 95/337 (28%), Positives = 152/337 (45%), Gaps = 41/337 (12%)

Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 696
                +  + E ++ F     R Y N +E   R + F++     + H +K+ +   S   
Sbjct: 10  GSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL 69

Query: 697 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 752
               F+D +PEE+     G       ++  +  + + +   + +      P ++DWR + 
Sbjct: 70  GVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTRED---LGLNASVRYPASFDWRDQG 126

Query: 753 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKS--QLVECAKQCSGCDGCFFE 810
           +  P  +Q +CGS WAFS  G +E Q  I  G   + S S  QLV+C     GC G +  
Sbjct: 127 MVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMN 186

Query: 811 PSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILY 868
            +  Y  Q  G++SE  YPY+ A+G    C YD ++V    +G  +L       +  ++ 
Sbjct: 187 DAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVA 243

Query: 869 KYGPLSVLLNSDLIHD--------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
             GP++V  ++D            Y          TC      HAVL+VGYG ++   YW
Sbjct: 244 TKGPVAVAFDAD--DPFGSYSGGVYYN-------PTCETNKFTHAVLIVGYGNENGQDYW 294

Query: 921 LVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           LV+NSWG     +G+FKI R  NN CGI  +A   T+
Sbjct: 295 LVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  228 bits (584), Expect = 1e-67
 Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 36/335 (10%)

Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 330
                +  + E ++ F     R Y N +E   R + F++     + H +K+ +   S   
Sbjct: 10  GSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL 69

Query: 331 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 386
               F+D +PEE+     G       ++  +  + + +   + +      P ++DWR + 
Sbjct: 70  GVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTRED---LGLNASVRYPASFDWRDQG 126

Query: 387 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKS--QLVECAKQCSGCGGCDGL 444
           +  P  +Q +CGS WAFS  G +E Q  I  G   + S S  QLV+C     GC G  G 
Sbjct: 127 MVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSG--GW 184

Query: 445 -EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-M 498
                 Y  Q  G++SE  YPY         C YD ++V     +   Y       E  +
Sbjct: 185 MNDAFTYVAQNGGIDSEGAYPYE---MADGNCHYDPNQV---AARLSGYVYLSGPDENML 238

Query: 499 KKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLA 557
             ++   GP++V  +       Y+G      + TC      HAVL+VGYG ++   YWL 
Sbjct: 239 ADMVATKGPVAVAFDADDPFGSYSGGVY--YNPTCETNKFTHAVLIVGYGNENGQDYWLV 296

Query: 558 RNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
           +NSWG     +G+FKI R  NN CGI  +A   T+
Sbjct: 297 KNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  205 bits (523), Expect = 4e-59
 Identities = 78/236 (33%), Positives = 113/236 (47%), Gaps = 25/236 (10%)

Query: 3   MEVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKS- 61
           + +      P ++DWR + +  P  +Q  CGS WAFS  G +E Q  I  G   + S S 
Sbjct: 108 LGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSE 167

Query: 62  -QLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF- 118
            QLV+C     GC G +   +  Y  Q  G++SE  YPY+ A+G    C YD ++V    
Sbjct: 168 QQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARL 224

Query: 119 TGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETCSPYD 170
           +G  +L       +  ++   GP++V  ++D            Y          TC    
Sbjct: 225 SGYVYLSGPDENMLADMVATKGPVAVAFDAD--DPFGSYSGGVYYN-------PTCETNK 275

Query: 171 LGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
             HAVL+VGYG ++   YWLV+NSWG     +G+FKI R  NN CGI  +A   T+
Sbjct: 276 FTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 87.7 bits (218), Expect = 1e-18
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
             + TC      HAVL+VGYG ++   YWLV+NSWG     +G+FKI R  NN CGI  +A
Sbjct: 267  YNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVA 326

Query: 1020 GYATI 1024
               T+
Sbjct: 327  SVPTL 331

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  223 bits (572), Expect = 2e-67
 Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K   
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 72  GCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
            C G     +        GLE+E DY Y+        C +   K K+   +D +  + +E
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQNE 117

Query: 131 T-MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 189
             +   L K GP+SV +N+  +  Y     R     CSP+ + HAVLLVGYG++ ++P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177

Query: 190 LVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 226
            ++NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  223 bits (571), Expect = 3e-67
 Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K   
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 803 GCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            C G     +        GLE+E DY Y+        C +   K K+   +D +  + +E
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQNE 117

Query: 862 T-MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYW 920
             +   L K GP+SV +N+  +  Y     R     CSP+ + HAVLLVGYG++ ++P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177

Query: 921 LVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 957
            ++NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  223 bits (570), Expect = 4e-67
 Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 9/219 (4%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K   
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 437 GCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
            C G  GL            GLE+E DY Y+        C +   K K+   +D +  + 
Sbjct: 62  ACMG--GLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQ 115

Query: 495 SET-MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
           +E  +   L K GP+SV +N+  + FY     R     CSP+ + HAVLLVGYG++ D+P
Sbjct: 116 NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVP 175

Query: 554 YWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
           +W  +NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 96.0 bits (240), Expect = 2e-22
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 1021
               CSP+ + HAVLLVGYG++ D+P+W ++NSWG    ++G++ + RG+ ACG+  +A  
Sbjct: 151  RPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210

Query: 1022 ATID 1025
            A +D
Sbjct: 211  AVVD 214

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  225 bits (575), Expect = 2e-66
 Identities = 89/325 (27%), Positives = 142/325 (43%), Gaps = 44/325 (13%)

Query: 290 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 337
           + +  +     ++Y   ++ + R   +++       H  +H+    +      +F+D + 
Sbjct: 3   DLWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61

Query: 338 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 397
           EE   K   + S           + +   +     +  VPD  DWR+        DQ  C
Sbjct: 62  EEFKAKYLTEMSRA--------SDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNC 113

Query: 398 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAG 455
           GS WAFS  G +EGQY       + FS+ QLV+C++   G  GC G  +E   +Y  Q G
Sbjct: 114 GSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW-GNNGCGGGLMENAYQYLKQFG 172

Query: 456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVG 511
           LE+E  YPY      + +C Y+K        K   ++    GSE  +K ++   GP +V 
Sbjct: 173 LETESSYPYT---AVEGQCRYNKQLG---VAKVTGFYTVHSGSEVELKNLVGAEGPAAVA 226

Query: 512 LN-SHLIHFYNGTPIRK---NDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPD 567
           ++       Y     R      +TCSP  + HAVL VGYG Q    YW+ +NSWG    +
Sbjct: 227 VDVESDFMMY-----RSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGE 281

Query: 568 EGFFKIERG-NNACGIEQIAGYATI 591
            G+ ++ R   N CGI  +A    +
Sbjct: 282 RGYIRMVRNRGNMCGIASLASLPMV 306

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  224 bits (572), Expect = 5e-66
 Identities = 89/325 (27%), Positives = 142/325 (43%), Gaps = 45/325 (13%)

Query: 656 ETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------EFSDRSP 703
           + +  +     ++Y   ++ + R   +++       H  +H+    +      +F+D + 
Sbjct: 3   DLWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61

Query: 704 EEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAAC 763
           EE   K   + S           + +   +     +  VPD  DWR+        DQ  C
Sbjct: 62  EEFKAKYLTEMSRA--------SDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNC 113

Query: 764 GSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC--SGCDGCFFEPSIEYTHQAGL 821
           GS WAFS  G +EGQY       + FS+ QLV+C++    +GC G   E + +Y  Q GL
Sbjct: 114 GSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGL 173

Query: 822 ESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLNSD 880
           E+E  YPY    G   +C Y+K       TG   +H      +K ++   GP +V ++ +
Sbjct: 174 ETESSYPYTAVEG---QCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE 230

Query: 881 LIHD--------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPD 932
              D        Y         +TCSP  + HAVL VGYG Q    YW+V+NSWG    +
Sbjct: 231 --SDFMMYRSGIYQS-------QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGE 281

Query: 933 EGFFKIERG-NNACGIEQIAGYATI 956
            G+ ++ R   N CGI  +A    +
Sbjct: 282 RGYIRMVRNRGNMCGIASLASLPMV 306

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  204 bits (521), Expect = 4e-59
 Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 24/230 (10%)

Query: 8   DGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA 67
           +  VPD  DWR+        DQ +CGS WAFS  G +EGQY       + FS+ QLV+C+
Sbjct: 89  NRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCS 148

Query: 68  KQC--SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFL 124
           +    +GC G   E + +Y  Q GLE+E  YPY    G   +C Y+K       TG   +
Sbjct: 149 RPWGNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEG---QCRYNKQLGVAKVTGFYTV 205

Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETCSPYDLGHAVL 176
           H      +K ++   GP +V ++ +   D        Y         +TCSP  + HAVL
Sbjct: 206 HSGSEVELKNLVGAEGPAAVAVDVE--SDFMMYRSGIYQS-------QTCSPLRVNHAVL 256

Query: 177 LVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
            VGYG Q    YW+V+NSWG    + G+ ++ R   N CGI  +A    +
Sbjct: 257 AVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 84.6 bits (210), Expect = 9e-18
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
              +TCSP  + HAVL VGYG Q    YW+V+NSWG    + G+ ++ R   N CGI  +A
Sbjct: 242  QSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA 301

Query: 1020 GYATI 1024
                +
Sbjct: 302  SLPMV 306

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  224 bits (574), Expect = 2e-66
 Identities = 91/328 (27%), Positives = 146/328 (44%), Gaps = 35/328 (10%)

Query: 649 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 696
           +  E +   ++ +     +QY N  +   R   +++       H  +      +      
Sbjct: 2   YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61

Query: 697 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 756
              D + EE          + T  ++     +    L   E +G  PD+ D+RKK    P
Sbjct: 62  HLGDMTSEE------VV-QKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTP 114

Query: 757 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEY- 815
             +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  GC G +   + +Y 
Sbjct: 115 VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYV 174

Query: 816 THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLS 874
               G++SE  YPY         C Y+ +       G   +     + +K+ + + GP+S
Sbjct: 175 QKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVS 231

Query: 875 VLLNSDLI--HDYNGTPIRK---NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI 929
           V +++ L     Y      K    DE+C+  +L HAVL VGYG Q    +W+++NSWG  
Sbjct: 232 VAIDASLTSFQFY-----SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGEN 286

Query: 930 GPDEGFFKIERG-NNACGIEQIAGYATI 956
             ++G+  + R  NNACGI  +A +  +
Sbjct: 287 WGNKGYILMARNKNNACGIANLASFPKM 314

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  223 bits (570), Expect = 8e-66
 Identities = 97/335 (28%), Positives = 150/335 (44%), Gaps = 48/335 (14%)

Query: 283 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 330
           +  E +   ++ +     +QY N  +   R   +++       H  +      +      
Sbjct: 2   YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61

Query: 331 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 390
              D + EE          + T  ++     +    L   E +G  PD+ D+RKK    P
Sbjct: 62  HLGDMTSEE------VV-QKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTP 114

Query: 391 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIE 449
             +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  GCGG  G      +
Sbjct: 115 VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQ 172

Query: 450 Y-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYK 504
           Y     G++SE  YPY    G++  C Y+ +       K   Y     G+E  +K+ + +
Sbjct: 173 YVQKNRGIDSEDAYPYV---GQEESCMYNPTGK---AAKCRGYREIPEGNEKALKRAVAR 226

Query: 505 YGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLA 557
            GP+SV +++ L  F       Y        DE+C+  +L HAVL VGYG Q    +W+ 
Sbjct: 227 VGPVSVAIDASLTSFQFYSKGVY-------YDESCNSDNLNHAVLAVGYGIQKGNKHWII 279

Query: 558 RNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
           +NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 280 KNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  201 bits (513), Expect = 6e-58
 Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 16/228 (7%)

Query: 6   EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
           E +G  PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+
Sbjct: 95  EWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVD 154

Query: 66  CAKQCSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDF 123
           C  +  GC G +   + +Y     G++SE  YPY         C Y+ +       G   
Sbjct: 155 CVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYRE 211

Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRK---NDETCSPYDLGHAVLLV 178
           +     + +K+ + + GP+SV +++ L     Y      K    DE+C+  +L HAVL V
Sbjct: 212 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFY-----SKGVYYDESCNSDNLNHAVLAV 266

Query: 179 GYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           GYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 267 GYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
             DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A
Sbjct: 250  YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA 309

Query: 1020 GYATI 1024
             +  +
Sbjct: 310  SFPKM 314

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  215 bits (550), Expect = 3e-64
 Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 15/221 (6%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 72  GCDGCFFEPSIEYTHQA---GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFN 127
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121

Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQD 184
               +   L   GP++V +++     Y G   T        C    L H VLLVGY    
Sbjct: 122 -EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYNDSA 173

Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
            +PYW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  215 bits (549), Expect = 3e-64
 Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 15/221 (6%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 803 GCDGCFFEPSIEYTHQA---GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFN 858
           GC G     + E+  Q     + +E  YPY +  G    C      V    TG   L  +
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121

Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQD 915
               +   L   GP++V +++     Y G   T        C    L H VLLVGY    
Sbjct: 122 -EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYNDSA 173

Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
            +PYW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  213 bits (546), Expect = 1e-63
 Identities = 71/223 (31%), Positives = 100/223 (44%), Gaps = 18/223 (8%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 437 GCGGCDGLE----QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
           GC G  GL     + I   +   + +E  YPY +G G    C      V   T    +  
Sbjct: 62  GCSG--GLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGA-TITGHVEL 118

Query: 493 NGSET-MKKILYKYGPLSVGLNSHLIHFYNG---TPIRKNDETCSPYDLGHAVLLVGYGK 548
              E  +   L   GP++V +++     Y G   T        C    L H VLLVGY  
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYND 171

Query: 549 QDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
              +PYW+ +NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 172 SAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 91.4 bits (228), Expect = 6e-21
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 1024
            C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 155  CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  218 bits (557), Expect = 6e-64
 Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 50/336 (14%)

Query: 283 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 330
             +  +   +  +    G+QY    E   R   +++       H  +H     S      
Sbjct: 3   HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62

Query: 331 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 390
              D + EE                +    +    +  +   +  +PD+ DWR+K     
Sbjct: 63  HLGDMTSEE------VM---SLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTE 113

Query: 391 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPI 448
              Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    
Sbjct: 114 VKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAF 173

Query: 449 EY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILY 503
           +Y     G++S+  YPY+  +    KC YD             Y     G E  +K+ + 
Sbjct: 174 QYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYR---AATCSKYTELPYGREDVLKEAVA 227

Query: 504 KYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
             GP+SVG+++    F       Y        + +C+  ++ H VL+VGYG  +   YWL
Sbjct: 228 NKGPVSVGVDARHPSFFLYRSGVY-------YEPSCTQ-NVNHGVLVVGYGDLNGKEYWL 279

Query: 557 ARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
            +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 280 VKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  213 bits (545), Expect = 2e-62
 Identities = 86/329 (26%), Positives = 139/329 (42%), Gaps = 37/329 (11%)

Query: 649 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS------ 696
             +  +   +  +    G+QY    E   R   +++       H  +H     S      
Sbjct: 3   HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62

Query: 697 EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGP 756
              D + EE                +    +    +  +   +  +PD+ DWR+K     
Sbjct: 63  HLGDMTSEE------VM---SLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTE 113

Query: 757 AGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGC---FFEPSI 813
              Q +CG+ WAFS  G LE Q  +KTGKLV  S   LV+C+ +  G  GC   F   + 
Sbjct: 114 VKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAF 173

Query: 814 EY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYG 871
           +Y     G++S+  YPYK  +    KC YD        +    L +   + +K+ +   G
Sbjct: 174 QYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 230

Query: 872 PLSVLLNSDLI--HDY-NGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGP 928
           P+SV +++       Y +G      + +C+  ++ H VL+VGYG  +   YWLV+NSWG 
Sbjct: 231 PVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGH 286

Query: 929 IGPDEGFFKIERG-NNACGIEQIAGYATI 956
              +EG+ ++ R   N CGI     Y  I
Sbjct: 287 NFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  191 bits (487), Expect = 2e-54
 Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 16/229 (6%)

Query: 6   EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
             +  +PD+ DWR+K        Q  CG+ WAFS  G LE Q  +KTGKLV  S   LV+
Sbjct: 94  NPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVD 153

Query: 66  CAKQCSGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TG 120
           C+ +  G  GC   F   + +Y     G++S+  YPYK  +    KC YD        + 
Sbjct: 154 CSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSK 210

Query: 121 KDFLHFNGSETMKKILYKYGPLSVLLNSDLI--HDY-NGTPIRKNDETCSPYDLGHAVLL 177
              L +   + +K+ +   GP+SV +++       Y +G      + +C+  ++ H VL+
Sbjct: 211 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLV 266

Query: 178 VGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 267 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 78.8 bits (195), Expect = 7e-16
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 959  VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQ 1017
            V  + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI  
Sbjct: 250  VYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 308

Query: 1018 IAGYATI 1024
               Y  I
Sbjct: 309  FPSYPEI 315

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  215 bits (551), Expect = 5e-63
 Identities = 94/330 (28%), Positives = 145/330 (43%), Gaps = 45/330 (13%)

Query: 651 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSEFSDRS 702
            E +++ F ++++   + Y N +E   RFE FK      D   KK+  Y  G +EF+D S
Sbjct: 15  TERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLS 74

Query: 703 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAA 762
            +E      F   +     I A  E+        E    +P+  DWRKK    P   Q +
Sbjct: 75  NDE------FN-EKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGS 127

Query: 763 CGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLE 822
           CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++  GC G +   ++EY  + G+ 
Sbjct: 128 CGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIH 187

Query: 823 SEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLLNSD 880
               YPYK   G    C   +    +        +  N    +   + K  P+SV++ S 
Sbjct: 188 LRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESK 243

Query: 881 LIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGP 931
                        + G         C    +  AV  VGYGK     Y L++NSWG    
Sbjct: 244 --GRPFQLYKGGIFEG--------PCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWG 292

Query: 932 DEGFFKIERGNNA----CGIEQIAGYATID 957
           ++G+ +I+R        CG+ + + Y T +
Sbjct: 293 EKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  214 bits (547), Expect = 2e-62
 Identities = 94/330 (28%), Positives = 144/330 (43%), Gaps = 44/330 (13%)

Query: 285 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSEFSDRS 336
            E +++ F ++++   + Y N +E   RFE FK      D   KK+  Y  G +EF+D S
Sbjct: 15  TERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLS 74

Query: 337 PEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAA 396
            +E      F   +     I A  E+        E    +P+  DWRKK    P   Q +
Sbjct: 75  NDE------FN-EKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGS 127

Query: 397 CGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAG 455
           CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++  GC G  G     +EY  + G
Sbjct: 128 CGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKNG 185

Query: 456 LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF-NGSET-MKKILYKYGPLSVGLN 513
           +     YPY+    ++  C   +    +            +E  +   + K  P+SV + 
Sbjct: 186 IHLRSKYPYK---AKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVE 241

Query: 514 SHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGP 566
           S    F       + G         C    +  AV  VGYGK     Y L +NSWG    
Sbjct: 242 SKGRPFQLYKGGIFEG--------PCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWG 292

Query: 567 DEGFFKIERGNNA----CGIEQIAGYATID 592
           ++G+ +I+R        CG+ + + Y T +
Sbjct: 293 EKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  190 bits (484), Expect = 7e-54
 Identities = 70/236 (29%), Positives = 105/236 (44%), Gaps = 30/236 (12%)

Query: 6   EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
           E    +P+  DWRKK    P   Q  CGSCWAFS    +EG   I+TGKLVE S+ +LV+
Sbjct: 102 EDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVD 161

Query: 66  CAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF-- 123
           C ++  GC G +   ++EY  + G+     YPYK   G    C   +    +        
Sbjct: 162 CERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGR 218

Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHA 174
           +  N    +   + K  P+SV++ S              + G         C    +  A
Sbjct: 219 VQPNNEGNLLNAIAK-QPVSVVVESK--GRPFQLYKGGIFEG--------PCGT-KVDGA 266

Query: 175 VLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
           V  VGYGK     Y L++NSWG    ++G+ +I+R        CG+ + + Y T +
Sbjct: 267 VTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
            +  C    +  AV  VGYGK     Y L++NSWG    ++G+ +I+R        CG+ +
Sbjct: 256  EGPCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYK 314

Query: 1018 IAGYATID 1025
             + Y T +
Sbjct: 315  SSYYPTKN 322

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  215 bits (550), Expect = 5e-63
 Identities = 97/341 (28%), Positives = 148/341 (43%), Gaps = 54/341 (15%)

Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 330
           SLTFD  ++   +  +     R Y  +EE   R   +++     + H +++     S   
Sbjct: 1   SLTFD-HSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTM 58

Query: 331 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 386
               F D + EE      GF+  +    ++  +    E            P + DWR+K 
Sbjct: 59  AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE-----------APRSVDWREKG 107

Query: 387 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--L 444
              P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+    G  GC+G  +
Sbjct: 108 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLM 166

Query: 445 EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKIL 502
           +   +Y     GL+SE+ YPY      +  C Y+           F+     E  + K +
Sbjct: 167 DYAFQYVQDNGGLDSEESYPYE---ATEESCKYNPKYSVA-NDAGFVDIPKQEKALMKAV 222

Query: 503 YKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDD 551
              GP+SV +++    F       Y        +  CS  D+ H VL+VGYG    + D+
Sbjct: 223 ATVGPISVAIDAGHESFLFYKEGIY-------FEPDCSSEDMDHGVLVVGYGFESTESDN 275

Query: 552 IPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
             YWL +NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 276 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  214 bits (546), Expect = 2e-62
 Identities = 98/342 (28%), Positives = 149/342 (43%), Gaps = 57/342 (16%)

Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERYGTS--- 696
           SLTFD  ++   +  +     R Y  +EE   R   +++     + H +++     S   
Sbjct: 1   SLTFD-HSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTM 58

Query: 697 ---EFSDRSPEEILCK-TGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN 752
               F D + EE      GF+  +    ++  +    E            P + DWR+K 
Sbjct: 59  AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE-----------APRSVDWREKG 107

Query: 753 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFE 810
              P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+      GC+G   +
Sbjct: 108 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMD 167

Query: 811 PSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILY 868
            + +Y     GL+SE+ YPY+        C Y+           F+     E  + K + 
Sbjct: 168 YAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDAGFVDIPKQEKALMKAVA 223

Query: 869 KYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYG----KQD 915
             GP+SV +++   H+         Y        +  CS  D+ H VL+VGYG    + D
Sbjct: 224 TVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVVGYGFESTESD 274

Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           N  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 275 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  192 bits (490), Expect = 9e-55
 Identities = 79/238 (33%), Positives = 112/238 (47%), Gaps = 31/238 (13%)

Query: 6   EKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVE 65
                 P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+
Sbjct: 92  PLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVD 151

Query: 66  CAKQ--CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKD 122
           C+      GC+G   + + +Y     GL+SE+ YPY+        C Y+           
Sbjct: 152 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDAG 207

Query: 123 FLHFNGSET-MKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLG 172
           F+     E  + K +   GP+SV +++   H+         Y        +  CS  D+ 
Sbjct: 208 FVDIPKQEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMD 258

Query: 173 HAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           H VL+VGYG    + DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 259 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 79.2 bits (196), Expect = 6e-16
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 959  VKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNAC 1013
            +  +  CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N C
Sbjct: 246  IYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 305

Query: 1014 GIEQIAGYATI 1024
            GI   A Y T+
Sbjct: 306  GIASAASYPTV 316

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score = 89.5 bits (223), Expect = 3e-20
 Identities = 17/66 (25%), Positives = 24/66 (36%)

Query: 959  VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
                         HAV +VGY     + YW+VRNSW     D G+       +   IE+ 
Sbjct: 157  TIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEY 216

Query: 1019 AGYATI 1024
                 +
Sbjct: 217  PYVVIL 222

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  210 bits (537), Expect = 8e-60
 Identities = 82/317 (25%), Positives = 129/317 (40%), Gaps = 31/317 (9%)

Query: 663 VKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGT----SEFSDRSPEEILCKTGFK 713
           V     +  + + K     +K            ++  T     E+   +  +++ ++G  
Sbjct: 125 VYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSG-- 182

Query: 714 WSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK---NVTGPAGDQAACGSCWAFS 770
                + R +   +         +K   +P +WDWR     N   P  +QA+CGSC++F+
Sbjct: 183 ----GHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFA 238

Query: 771 IAGMLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDY 827
             GMLE +  I T        S  ++V C++   GC+G F         Q  GL  E  +
Sbjct: 239 SMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACF 298

Query: 828 PYKNANGE-KFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN--SDLIH 883
           PY   +   K K    +     +      +   +E  MK  L  +GP++V      D +H
Sbjct: 299 PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 358

Query: 884 DYNG---TPIRKNDETCSPYDLGHAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKI 938
            Y           D         HAVLLVGYG      + YW+V+NSWG    + G+F+I
Sbjct: 359 -YKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRI 417

Query: 939 ERGNNACGIEQIAGYAT 955
            RG + C IE IA  AT
Sbjct: 418 RRGTDECAIESIAVAAT 434

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  208 bits (531), Expect = 5e-59
 Identities = 81/318 (25%), Positives = 127/318 (39%), Gaps = 32/318 (10%)

Query: 297 VKRGRQYANDEEIKERFEYFKQ-----DGHKKHERYGT----SEFSDRSPEEILCKTGFK 347
           V     +  + + K     +K            ++  T     E+   +  +++ ++G  
Sbjct: 125 VYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSG-- 182

Query: 348 WSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK---NVTGPAGDQAACGSCWAFS 404
                + R +   +         +K   +P +WDWR     N   P  +QA+CGSC++F+
Sbjct: 183 ----GHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFA 238

Query: 405 IAGMLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEK 460
             GMLE +  I T        S  ++V C++   GC G  G    I  +Y    GL  E 
Sbjct: 239 SMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEG--GFPYLIAGKYAQDFGLVEEA 296

Query: 461 DYPYRNGNGE-KFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNSHL-I 517
            +PY   +   K K    +     +      Y   +E  MK  L  +GP++V    +   
Sbjct: 297 CFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDF 356

Query: 518 HFYNG---TPIRKNDETCSPYDLGHAVLLVGYG--KQDDIPYWLARNSWGPIGPDEGFFK 572
             Y           D         HAVLLVGYG      + YW+ +NSWG    + G+F+
Sbjct: 357 LHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFR 416

Query: 573 IERGNNACGIEQIAGYAT 590
           I RG + C IE IA  AT
Sbjct: 417 IRRGTDECAIESIAVAAT 434

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  198 bits (504), Expect = 2e-55
 Identities = 75/234 (32%), Positives = 105/234 (44%), Gaps = 16/234 (6%)

Query: 6   EKDGPVPDAWDWRKK---NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 60
           +K   +P +WDWR     N   P  +QA CGSC++F+  GMLE +  I T        S 
Sbjct: 202 QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 261

Query: 61  SQLVECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGE-KFKCAYDKSKVKLF 118
            ++V C++   GC+G F         Q  GL  E  +PY   +   K K    +     +
Sbjct: 262 QEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 321

Query: 119 TGKDFLHFNGSET-MKKILYKYGPLSVLLN--SDLIHDYNG---TPIRKNDETCSPYDLG 172
                 +   +E  MK  L  +GP++V      D +H Y           D         
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH-YKKGIYHHTGLRDPFNPFELTN 380

Query: 173 HAVLLVGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 224
           HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C IE IA  AT
Sbjct: 381 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 91.4 bits (227), Expect = 2e-19
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 961  NDETCSPYDLGHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
             D         HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C IE I
Sbjct: 370  RDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESI 429

Query: 1019 AGYAT 1023
            A  AT
Sbjct: 430  AVAAT 434

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  200 bits (511), Expect = 1e-58
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 18/241 (7%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
            P++WDW KK V      Q  CGS WAFS  G +E  +AI TG LV  S+ +L++C  + 
Sbjct: 2   APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61

Query: 802 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKL----FTGKDFLH 856
            GC   +   S E+  +  G+ SE DYPYK  +G   KC  ++ + K+    +  +   +
Sbjct: 62  EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDG---KCKANEIQDKVTIDNYGVQILSN 118

Query: 857 FN---GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS-PYDLGHAVLLVGYG 912
            +    +E+  +      P+SV +++   H Y+G     +   CS PY + H VL+VGYG
Sbjct: 119 ESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVGYG 176

Query: 913 KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATIDVVKNDETCSPY 968
            +D + YW+ +NSWG     +G+ +I+R        CG+   A Y  I+  +  +     
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEKSETLKFGRVK 236

Query: 969 D 969
            
Sbjct: 237 A 237

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  199 bits (508), Expect = 4e-58
 Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 18/229 (7%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            P++WDW KK V      Q  CGS WAFS  G +E  +AI TG LV  S+ +L++C  + 
Sbjct: 2   APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61

Query: 71  SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKL----FTGKDFLH 125
            GC   +   S E+  +  G+ SE DYPYK  +G   KC  ++ + K+    +  +   +
Sbjct: 62  EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDG---KCKANEIQDKVTIDNYGVQILSN 118

Query: 126 FN---GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS-PYDLGHAVLLVGYG 181
            +    +E+  +      P+SV +++   H Y+G     +   CS PY + H VL+VGYG
Sbjct: 119 ESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVGYG 176

Query: 182 KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
            +D + YW+ +NSWG     +G+ +I+R        CG+   A Y  I+
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  198 bits (507), Expect = 6e-58
 Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 21/231 (9%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
            P++WDW KK V      Q  CGS WAFS  G +E  +AI TG LV  S+ +L++C  + 
Sbjct: 2   APESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES 61

Query: 436 SGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKL----FTGKDF 489
            GC    G   Q  E+  +  G+ SE DYPY+  +G   KC  ++ + K+    +  +  
Sbjct: 62  EGCYN--GWHYQSFEWVVKHGGIASEADYPYKARDG---KCKANEIQDKVTIDNYGVQIL 116

Query: 490 LYFN---GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCS-PYDLGHAVLLVG 545
              +    +E+  +      P+SV +++   HFY+G     +   CS PY + H VL+VG
Sbjct: 117 SNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVG 174

Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
           YG +D + YW+A+NSWG     +G+ +I+R        CG+   A Y  I+
Sbjct: 175 YGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 961  NDETCS-PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGI 1015
            +   CS PY + H VL+VGYG +D + YW+ +NSWG     +G+ +I+R        CG+
Sbjct: 156  DGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGM 215

Query: 1016 EQIAGYATID 1025
               A Y  I+
Sbjct: 216  NYFASYPIIE 225

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  198 bits (507), Expect = 2e-58
 Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 24/226 (10%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 72  GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGS 129
           GC G +   + +Y     G++SE  YPY         C Y+ +       G   +     
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNE 118

Query: 130 ETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGY 180
           + +K+ + + GP+SV +++              Y        DE+C+  +L HAVL VGY
Sbjct: 119 KALKRAVARVGPVSVAIDAS--LTSFQFYSKGVY-------YDESCNSDNLNHAVLAVGY 169

Query: 181 GKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           G Q    +W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 170 GIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  198 bits (506), Expect = 3e-58
 Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 24/226 (10%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 803 GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGS 860
           GC G +   + +Y     G++SE  YPY         C Y+ +       G   +     
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNE 118

Query: 861 ETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGY 911
           + +K+ + + GP+SV +++              Y        DE+C+  +L HAVL VGY
Sbjct: 119 KALKRAVARVGPVSVAIDAS--LTSFQFYSKGVY-------YDESCNSDNLNHAVLAVGY 169

Query: 912 GKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           G Q    +W+++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 170 GIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  196 bits (501), Expect = 1e-57
 Identities = 83/229 (36%), Positives = 116/229 (50%), Gaps = 29/229 (12%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 437 GCGGCDGL-EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
           GCGG  G      +Y     G++SE  YPY         C Y+ +       K   Y   
Sbjct: 62  GCGG--GYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGK---AAKCRGYREI 113

Query: 494 --GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLL 543
             G+E  +K+ + + GP+SV +++ L  F       Y        DE+C+  +L HAVL 
Sbjct: 114 PEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY-------YDESCNSDNLNHAVLA 166

Query: 544 VGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
           VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 167 VGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
             DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A
Sbjct: 151  YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA 210

Query: 1020 GYATI 1024
             +  +
Sbjct: 211  SFPKM 215

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  196 bits (501), Expect = 1e-57
 Identities = 81/227 (35%), Positives = 111/227 (48%), Gaps = 28/227 (12%)

Query: 377 PDAWDWRKK--NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 434
           P + DWRKK   V+ P  +Q +CGSCW FS  G LE   AI TGK++  ++ QLV+CA+ 
Sbjct: 2   PPSMDWRKKGNFVS-PVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 60

Query: 435 CSGCGGCDG--LEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLY 491
                GC G    Q  EY     G+  E  YPY+  +     C +   K           
Sbjct: 61  F-NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD---HCKFQPDKA---IAFVKDV 113

Query: 492 FN---GSET-MKKILYKYGPLSVGLN-SHLIHFYNGTPIRK---NDETC--SPYDLGHAV 541
            N     E  M + +  Y P+S     ++    Y     RK   +  +C  +P  + HAV
Sbjct: 114 ANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMY-----RKGIYSSTSCHKTPDKVNHAV 168

Query: 542 LLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGY 588
           L VGYG+++ IPYW+ +NSWGP     G+F IERG N CG+   A Y
Sbjct: 169 LAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  196 bits (500), Expect = 2e-57
 Identities = 82/227 (36%), Positives = 111/227 (48%), Gaps = 29/227 (12%)

Query: 12  PDAWDWRKK--NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 69
           P + DWRKK   V+ P  +Q  CGSCW FS  G LE   AI TGK++  ++ QLV+CA+ 
Sbjct: 2   PPSMDWRKKGNFVS-PVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 60

Query: 70  C--SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 125
               GC G     + EY     G+  E  YPYK  +     C +   K   F      + 
Sbjct: 61  FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD---HCKFQPDKAIAFVKDVANIT 117

Query: 126 FNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETC--SPYDLGHAV 175
            N  E M + +  Y P+S        +D        Y       +  +C  +P  + HAV
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVT--NDFLMYRKGIY-------SSTSCHKTPDKVNHAV 168

Query: 176 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 222
           L VGYG+++ IPYW+V+NSWGP     G+F IERG N CG+   A Y
Sbjct: 169 LAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  195 bits (498), Expect = 4e-57
 Identities = 82/227 (36%), Positives = 112/227 (49%), Gaps = 29/227 (12%)

Query: 743 PDAWDWRKK--NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 800
           P + DWRKK   V+ P  +Q +CGSCW FS  G LE   AI TGK++  ++ QLV+CA+ 
Sbjct: 2   PPSMDWRKKGNFVS-PVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 60

Query: 801 C--SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 856
               GC G     + EY     G+  E  YPYK  +     C +   K   F      + 
Sbjct: 61  FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD---HCKFQPDKAIAFVKDVANIT 117

Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHD--------YNGTPIRKNDETC--SPYDLGHAV 906
            N  E M + +  Y P+S        +D        Y       +  +C  +P  + HAV
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVT--NDFLMYRKGIY-------SSTSCHKTPDKVNHAV 168

Query: 907 LLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 953
           L VGYG+++ IPYW+V+NSWGP     G+F IERG N CG+   A Y
Sbjct: 169 LAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 84.8 bits (211), Expect = 1e-18
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 961  NDETC--SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQI 1018
            +  +C  +P  + HAVL VGYG+++ IPYW+V+NSWGP     G+F IERG N CG+   
Sbjct: 153  SSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAAC 212

Query: 1019 AGY 1021
            A Y
Sbjct: 213  ASY 215

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  198 bits (505), Expect = 1e-56
 Identities = 68/294 (23%), Positives = 102/294 (34%), Gaps = 48/294 (16%)

Query: 696 SEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWD----WRKK 751
               + +  E     G                  ++   E E   P+P ++D    W   
Sbjct: 32  GVMQNITLREAKRLNGVIKKNNN------ASILPKRRFTEEEARAPLPSSFDSAEAWPNC 85

Query: 752 NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAKQCS-GCDGCFF 809
                  DQ+ACGSCWA + A  +  ++    G + V  S   L+ C   C  GC+G   
Sbjct: 86  PTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDP 145

Query: 810 EPSIEYTHQAGLESEKDYPYKNANGE----------------------KFKCAYDKSKVK 847
           + +  Y    GL S+   PY   +                         + C      V 
Sbjct: 146 DRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVV 205

Query: 848 LFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCSPYDL 902
            +         G +   + L+  GP  V  +   D I  Y       +         Y  
Sbjct: 206 NYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIA-Y------NSGVYHHVSGQYLG 258

Query: 903 GHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAGYAT 955
           GHAV LVG+G  + +PYW + NSW    G  +G+F I RG++ CGIE       
Sbjct: 259 GHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRRGSSECGIEDGGSAGI 311

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  194 bits (494), Expect = 2e-55
 Identities = 69/296 (23%), Positives = 103/296 (34%), Gaps = 51/296 (17%)

Query: 330 SEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWD----WRKK 385
               + +  E     G                  ++   E E   P+P ++D    W   
Sbjct: 32  GVMQNITLREAKRLNGVIKKNNN------ASILPKRRFTEEEARAPLPSSFDSAEAWPNC 85

Query: 386 NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAKQCSGCG-GCDG 443
                  DQ+ACGSCWA + A  +  ++    G + V  S   L+ C   CS CG GC+G
Sbjct: 86  PTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLAC---CSDCGDGCNG 142

Query: 444 --LEQPIEYTHQAGLESEKDYPYRNGNGE----------------------KFKCAYDKS 479
              ++   Y    GL S+   PY   +                         + C     
Sbjct: 143 GDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTI 202

Query: 480 KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHL-IHFYNGTPIRKN---DETCSPY 535
            V  +         G +   + L+  GP  V  + +     Y       +         Y
Sbjct: 203 PVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAY------NSGVYHHVSGQY 256

Query: 536 DLGHAVLLVGYGKQDDIPYWLARNSWGPI-GPDEGFFKIERGNNACGIEQIAGYAT 590
             GHAV LVG+G  + +PYW   NSW    G  +G+F I RG++ CGIE       
Sbjct: 257 LGGHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRRGSSECGIEDGGSAGI 311

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  193 bits (492), Expect = 5e-55
 Identities = 65/255 (25%), Positives = 95/255 (37%), Gaps = 42/255 (16%)

Query: 4   EVEKDGPVPDAWD----WRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLVEF 58
           E E   P+P ++D    W          DQ+ CGSCWA + A  +  ++    G + V  
Sbjct: 65  EEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHI 124

Query: 59  SKSQLVECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE------------- 104
           S   L+ C   C  GC+G   + +  Y    GL S+   PY   +               
Sbjct: 125 SAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCS 184

Query: 105 ---------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHD 153
                     + C      V  +         G +   + L+  GP  V  +   D I  
Sbjct: 185 QFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIA- 243

Query: 154 YNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFKIER 209
           Y       +         Y  GHAV LVG+G  + +PYW + NSW    G  +G+F I R
Sbjct: 244 Y------NSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRR 296

Query: 210 GNNACGIEQIAGYAT 224
           G++ CGIE       
Sbjct: 297 GSSECGIEDGGSAGI 311

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score = 94.0 bits (234), Expect = 7e-21
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAG 1020
                  Y  GHAV LVG+G  + +PYW + NSW    G  +G+F I RG++ CGIE    
Sbjct: 250  HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIRRGSSECGIEDGGS 308

Query: 1021 YAT 1023
               
Sbjct: 309  AGI 311

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  193 bits (492), Expect = 3e-56
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 21/227 (9%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61

Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
            G  GC+G  +    +Y     G++S+  YPY+  +    KC YD             Y 
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYR---AATCSKYT 115

Query: 493 N---GSET-MKKILYKYGPLSVGLN-SHLI-HFY-NGTPIRKNDETCSPYDLGHAVLLVG 545
               G E  +K+ +   GP+SVG++  H     Y +G      + +C+  ++ H VL+VG
Sbjct: 116 ELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVG 171

Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
           YG  +   YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 172 YGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  188 bits (480), Expect = 1e-54
 Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 16/224 (7%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +PD+ DWR+K        Q  CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61

Query: 71  SGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 125
            G  GC   F   + +Y     G++S+  YPYK  +    KC YD        +    L 
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELP 118

Query: 126 FNGSETMKKILYKYGPLSVLLN---SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGK 182
           +   + +K+ +   GP+SV ++          +G      + +C+  ++ H VL+VGYG 
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGD 174

Query: 183 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
            +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 175 LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  187 bits (478), Expect = 2e-54
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 16/224 (7%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ + 
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61

Query: 802 SGCDGC---FFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLH 856
            G  GC   F   + +Y     G++S+  YPYK  +    KC YD        +    L 
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELP 118

Query: 857 FNGSETMKKILYKYGPLSVLLN---SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGK 913
           +   + +K+ +   GP+SV ++          +G      + +C+  ++ H VL+VGYG 
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGD 174

Query: 914 QDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
            +   YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 175 LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 78.3 bits (194), Expect = 2e-16
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 959  VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQ 1017
            V  + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI  
Sbjct: 153  VYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211

Query: 1018 IAGYATI 1024
               Y  I
Sbjct: 212  FPSYPEI 218

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  191 bits (489), Expect = 6e-56
 Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 16/224 (7%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+  DWRKK    P   Q  CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++ 
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60

Query: 71  SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 128
            GC G +   ++EY  + G+     YPYK   G    C   +    +        +  N 
Sbjct: 61  HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNN 117

Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
              +   + K  P+SV++ S       Y G      +  C    + HAV  VGYGK    
Sbjct: 118 EGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIF---EGPCGT-KVDHAVTAVGYGKSGGK 172

Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
            Y L++NSWG    ++G+ +I+R        CG+ + + Y T +
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  191 bits (489), Expect = 7e-56
 Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 16/224 (7%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWRKK    P   Q +CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++ 
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60

Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 859
            GC G +   ++EY  + G+     YPYK   G    C   +    +        +  N 
Sbjct: 61  HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNN 117

Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
              +   + K  P+SV++ S       Y G      +  C    + HAV  VGYGK    
Sbjct: 118 EGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIF---EGPCGT-KVDHAVTAVGYGKSGGK 172

Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
            Y L++NSWG    ++G+ +I+R        CG+ + + Y T +
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  188 bits (481), Expect = 7e-55
 Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 29/231 (12%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P+  DWRKK    P   Q +CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++ 
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60

Query: 436 SGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
            GC G  G     +EY  + G+     YPY+    ++  C   +    +           
Sbjct: 61  HGCKG--GYPPYALEYVAKNGIHLRSKYPYK---AKQGTCRAKQVGGPIVKTSGVGRVQP 115

Query: 494 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 545
            +E  +   + K  P+SV + S    F       + G         C    + HAV  VG
Sbjct: 116 NNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG--------PCGT-KVDHAVTAVG 165

Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
           YGK     Y L +NSWG    ++G+ +I+R        CG+ + + Y T +
Sbjct: 166 YGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 77.1 bits (191), Expect = 5e-16
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
            +  C    + HAV  VGYGK     Y L++NSWG    ++G+ +I+R        CG+ +
Sbjct: 150  EGPCGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYK 208

Query: 1018 IAGYATID 1025
             + Y T +
Sbjct: 209  SSYYPTKN 216

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  189 bits (482), Expect = 6e-55
 Identities = 78/231 (33%), Positives = 110/231 (47%), Gaps = 28/231 (12%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+    
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ- 60

Query: 437 GCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
           G  GC+G  ++   +Y     GL+SE+ YPY         C Y+           F+   
Sbjct: 61  GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDTGFVDIP 116

Query: 494 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 545
             E  + K +   GP+SV +++    F       Y        +  CS  D+ H VL+VG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-------FEPDCSSEDMDHGVLVVG 169

Query: 546 YGKQ----DDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
           YG +    D+  YWL +NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 170 YGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  187 bits (477), Expect = 3e-54
 Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 31/232 (13%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-- 69
           P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+    
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61

Query: 70  CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
             GC+G   + + +Y     GL+SE+ YPY+        C Y+           F+    
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDTGFVDIPK 117

Query: 129 SET-MKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLV 178
            E  + K +   GP+SV +++   H+         Y        +  CS  D+ H VL+V
Sbjct: 118 QEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVV 168

Query: 179 GYGKQ----DNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           GYG +    DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 169 GYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  186 bits (476), Expect = 4e-54
 Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 31/232 (13%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-- 800
           P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+    
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61

Query: 801 CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
             GC+G   + + +Y     GL+SE+ YPY+        C Y+           F+    
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDTGFVDIPK 117

Query: 860 SET-MKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLV 909
            E  + K +   GP+SV +++   H+         Y        +  CS  D+ H VL+V
Sbjct: 118 QEKALMKAVATVGPISVAIDAG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVV 168

Query: 910 GYGKQ----DNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           GYG +    DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 169 GYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 959  VKNDETCSPYDLGHAVLLVGYGKQ----DDIPYWLVRNSWGPIGPDEGFFKIERG-NNAC 1013
            +  +  CS  D+ H VL+VGYG +    D+  YWLV+NSWG      G+ K+ +   N C
Sbjct: 150  IYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209

Query: 1014 GIEQIAGYATI 1024
            GI   A Y T+
Sbjct: 210  GIASAASYPTV 220

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  189 bits (482), Expect = 1e-54
 Identities = 71/238 (29%), Positives = 102/238 (42%), Gaps = 35/238 (14%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
              A+DWR      P  DQA CGSCWAFS  G +E QYAI+   L  FS+ +LV+C+ + 
Sbjct: 20  DRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKN 79

Query: 436 SGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
           +GC G  G      +      GL S+ DYPY +   E   C   +   +        Y +
Sbjct: 80  NGCYG--GYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNER---YTIKSYVS 132

Query: 494 GSET-MKKILYKYGPLSVGLN-SHLIHFYNG---TPIRKNDETCSPYDLGHAVLLVGYG- 547
             +   K+ L   GP+S+ +  S    FY G            C      HAV+LVGYG 
Sbjct: 133 IPDDKFKEALRYLGPISISIAASDDFAFYRGGFYDG------ECGA-APNHAVILVGYGM 185

Query: 548 ---------KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
                    + +   Y++ +NSWG    + G+  +E   N     C I   A    ++
Sbjct: 186 KDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  188 bits (479), Expect = 3e-54
 Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 30/235 (12%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
              A+DWR      P  DQA CGSCWAFS  G +E QYAI+   L  FS+ +LV+C+ + 
Sbjct: 20  DRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKN 79

Query: 71  SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
           +GC G +   + +      GL S+ DYPY +   E   C   +   +  T K ++     
Sbjct: 80  NGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNERY-TIKSYVSIP-D 135

Query: 130 ETMKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG---- 181
           +  K+ L   GP+S+ +  SD    Y G            C      HAV+LVGYG    
Sbjct: 136 DKFKEALRYLGPISISIAASDDFAFYRGGFYDG------ECGA-APNHAVILVGYGMKDI 188

Query: 182 ------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
                 + +   Y++++NSWG    + G+  +E   N     C I   A    ++
Sbjct: 189 YNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  187 bits (478), Expect = 4e-54
 Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 30/235 (12%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
              A+DWR      P  DQA CGSCWAFS  G +E QYAI+   L  FS+ +LV+C+ + 
Sbjct: 20  DRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKN 79

Query: 802 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
           +GC G +   + +      GL S+ DYPY +   E   C   +   +  T K ++     
Sbjct: 80  NGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPE--TCNLKRCNERY-TIKSYVSIP-D 135

Query: 861 ETMKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG---- 912
           +  K+ L   GP+S+ +  SD    Y G            C      HAV+LVGYG    
Sbjct: 136 DKFKEALRYLGPISISIAASDDFAFYRGGFYDG------ECGA-APNHAVILVGYGMKDI 188

Query: 913 ------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
                 + +   Y++++NSWG    + G+  +E   N     C I   A    ++
Sbjct: 189 YNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 962  DETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 1011
            D  C      HAV+LVGYG          + +   Y++++NSWG    + G+  +E   N
Sbjct: 167  DGECGA-APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225

Query: 1012 A----CGIEQIAGYATID 1025
                 C I   A    ++
Sbjct: 226  GYKKTCSIGTEAYVPLLE 243

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  188 bits (480), Expect = 2e-54
 Identities = 73/242 (30%), Positives = 107/242 (44%), Gaps = 35/242 (14%)

Query: 372 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 431
           ++     A+DWR  +   P  DQ  CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C
Sbjct: 14  EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73

Query: 432 AKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF 489
           + +  GC G  GL     E   +  G+  + DYPY +       C  D+   K       
Sbjct: 74  SFKNYGCNG--GLINNAFEDMIELGGICPDGDYPYVSDAPN--LCNIDRCTEK---YGIK 126

Query: 490 LYFNGSET-MKKILYKYGPLSVGLN-SHLIHFYNG---TPIRKNDETCSPYDLGHAVLLV 544
            Y +  +  +K+ L   GP+S+ +  S    FY              C    L HAV+LV
Sbjct: 127 NYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG------ECGD-QLNHAVMLV 179

Query: 545 GYG----------KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
           G+G          K +   Y++ +NSWG    + GF  IE   +     CG+   A    
Sbjct: 180 GFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239

Query: 591 ID 592
           I+
Sbjct: 240 IE 241

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  186 bits (475), Expect = 1e-53
 Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 32/240 (13%)

Query: 7   KDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 66
           ++     A+DWR  +   P  DQ +CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C
Sbjct: 14  EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73

Query: 67  AKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 125
           + +  GC+G     + E   +  G+  + DYPY +       C  D+   K        +
Sbjct: 74  SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPN--LCNIDRCTEK---YGIKNY 128

Query: 126 FNGSET-MKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGY 180
            +  +  +K+ L   GP+S+ +  SD    Y              C    L HAV+LVG+
Sbjct: 129 LSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG------ECGD-QLNHAVMLVGF 181

Query: 181 G----------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
           G          K +   Y++++NSWG    + GF  IE   +     CG+   A    I+
Sbjct: 182 GMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  186 bits (474), Expect = 1e-53
 Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 32/240 (13%)

Query: 738 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 797
           ++     A+DWR  +   P  DQ  CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C
Sbjct: 14  EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73

Query: 798 AKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 856
           + +  GC+G     + E   +  G+  + DYPY +       C  D+   K        +
Sbjct: 74  SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPN--LCNIDRCTEK---YGIKNY 128

Query: 857 FNGSET-MKKILYKYGPLSVLLN-SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGY 911
            +  +  +K+ L   GP+S+ +  SD    Y              C    L HAV+LVG+
Sbjct: 129 LSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG------ECGD-QLNHAVMLVGF 181

Query: 912 G----------KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
           G          K +   Y++++NSWG    + GF  IE   +     CG+   A    I+
Sbjct: 182 GMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 15/78 (19%)

Query: 962  DETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 1011
            D  C    L HAV+LVG+G          K +   Y++++NSWG    + GF  IE   +
Sbjct: 165  DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDES 223

Query: 1012 A----CGIEQIAGYATID 1025
                 CG+   A    I+
Sbjct: 224  GLMRKCGLGTDAFIPLIE 241

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  187 bits (477), Expect = 2e-54
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 15/221 (6%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C    
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60

Query: 71  SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
            GC+G +   + +Y     G++++++YPY    G    C   + +V    G   +  N  
Sbjct: 61  HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG---SCKPYRLRVVSINGFQRVTRNNE 117

Query: 130 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
             ++  +    P+SV + +       Y+          C      H V++VGYG Q    
Sbjct: 118 SALQSAVAS-QPVSVTVEAAGAPFQHYSSGIF---TGPCGT-AQNHGVVIVGYGTQSGKN 172

Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
           YW+VRNSWG    ++G+  +ER   +    CGI Q+  Y T
Sbjct: 173 YWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  187 bits (477), Expect = 3e-54
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 15/221 (6%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C    
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60

Query: 802 SGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
            GC+G +   + +Y     G++++++YPY    G    C   + +V    G   +  N  
Sbjct: 61  HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG---SCKPYRLRVVSINGFQRVTRNNE 117

Query: 861 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
             ++  +    P+SV + +       Y+          C      H V++VGYG Q    
Sbjct: 118 SALQSAVAS-QPVSVTVEAAGAPFQHYSSGIF---TGPCGT-AQNHGVVIVGYGTQSGKN 172

Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
           YW+VRNSWG    ++G+  +ER   +    CGI Q+  Y T
Sbjct: 173 YWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  184 bits (469), Expect = 3e-53
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 28/228 (12%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C    
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60

Query: 436 SGCGGCDGL-EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
            GC G  G      +Y     G++++++YPY      +  C   + +V    G   +  N
Sbjct: 61  HGCNG--GWMNNAFQYIITNGGIDTQQNYPYS---AVQGSCKPYRLRVVSINGFQRVTRN 115

Query: 494 GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
               ++  +    P+SV + +    F       + G         C      H V++VGY
Sbjct: 116 NESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTG--------PCGT-AQNHGVVIVGY 165

Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
           G Q    YW+ RNSWG    ++G+  +ER   +    CGI Q+  Y T
Sbjct: 166 GTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 73.7 bits (182), Expect = 8e-15
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
               C      H V++VGYG Q    YW+VRNSWG    ++G+  +ER   +    CGI Q
Sbjct: 149  TGPCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQ 207

Query: 1018 IAGYAT 1023
            +  Y T
Sbjct: 208  LPSYPT 213

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  186 bits (474), Expect = 6e-54
 Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 20/224 (8%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P + DWR+K    P  +Q  CGSCW FS    +EG   I TG+L+  S+ +L++C ++ 
Sbjct: 1   IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60

Query: 71  SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 128
            GC G F   +++Y   +G+   + YPY+       +C   ++K           +  N 
Sbjct: 61  YGCRGGFPLYALQYVANSGIHLRQYYPYEGVQR---QCRASQAKGPKVKTDGVGRVPRNN 117

Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
            + + + +    P+S+++ +      +Y G         C    + HAV  VGYG     
Sbjct: 118 EQALIQRIAI-QPVSIVVEAKGRAFQNYRGGIF---AGPCGT-SIDHAVAAVGYGN---- 168

Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
            Y L++NSWG    + G+ +I+RG+      CG+   + + T +
Sbjct: 169 DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTKN 212

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  186 bits (474), Expect = 7e-54
 Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 20/224 (8%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P + DWR+K    P  +Q  CGSCW FS    +EG   I TG+L+  S+ +L++C ++ 
Sbjct: 1   IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60

Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 859
            GC G F   +++Y   +G+   + YPY+       +C   ++K           +  N 
Sbjct: 61  YGCRGGFPLYALQYVANSGIHLRQYYPYEGVQR---QCRASQAKGPKVKTDGVGRVPRNN 117

Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
            + + + +    P+S+++ +      +Y G         C    + HAV  VGYG     
Sbjct: 118 EQALIQRIAI-QPVSIVVEAKGRAFQNYRGGIF---AGPCGT-SIDHAVAAVGYGN---- 168

Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
            Y L++NSWG    + G+ +I+RG+      CG+   + + T +
Sbjct: 169 DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTKN 212

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  183 bits (468), Expect = 4e-53
 Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 31/230 (13%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P + DWR+K    P  +Q  CGSCW FS    +EG   I TG+L+  S+ +L++C ++ 
Sbjct: 1   IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60

Query: 436 SGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
            GC G  G     ++Y   +G+   + YPY    G + +C   ++K              
Sbjct: 61  YGCRG--GFPLYALQYVANSGIHLRQYYPYE---GVQRQCRASQAKGPKVKTDGVGRVPR 115

Query: 494 GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
            +E          P+S+ + +    F       + G         C    + HAV  VGY
Sbjct: 116 NNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAG--------PCGT-SIDHAVAAVGY 166

Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
           G      Y L +NSWG    + G+ +I+RG+      CG+   + + T +
Sbjct: 167 GN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTKN 212

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 70.9 bits (175), Expect = 5e-14
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
               C    + HAV  VGYG      Y L++NSWG    + G+ +I+RG+      CG+  
Sbjct: 150  AGPCGT-SIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLS 204

Query: 1018 IAGYATID 1025
             + + T +
Sbjct: 205  DSVFPTKN 212

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  186 bits (475), Expect = 2e-53
 Identities = 57/256 (22%), Positives = 91/256 (35%), Gaps = 44/256 (17%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
                D           DQ +C + W F+    LE    +K  +  + S   +  C K  
Sbjct: 10  CNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGE 69

Query: 71  --SGCDGCF----FEPSIEYTHQAGLESEKDYPYK---------------NANGEKFKCA 109
               CD       F   IE      L +E +YPY                    +  K  
Sbjct: 70  HKDRCDEGSSPMEFLQIIEDYG--FLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKIL 127

Query: 110 YDKSKVKLFTGKDFLHFNGS----------ETMKKILYKYGPLSVLLN--SDLIHDYNGT 157
           ++K++     GK +  +             + +K  +   G +   +   + + ++++G 
Sbjct: 128 HNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG- 186

Query: 158 PIRKNDETCSPYDLGHAVLLVGYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GN 211
             +K    C      HAV +VGYG   N       YW+VRNSWGP   DEG+FK++  G 
Sbjct: 187 --KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGP 244

Query: 212 NACGIEQIAGYATIDV 227
             C    I      +V
Sbjct: 245 THCHFNFIHSVVIFNV 260

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  185 bits (472), Expect = 5e-53
 Identities = 57/256 (22%), Positives = 90/256 (35%), Gaps = 44/256 (17%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
                D           DQ  C + W F+    LE    +K  +  + S   +  C K  
Sbjct: 10  CNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGE 69

Query: 802 --SGCDGCF----FEPSIEYTHQAGLESEKDYPYK---------------NANGEKFKCA 840
               CD       F   IE      L +E +YPY                    +  K  
Sbjct: 70  HKDRCDEGSSPMEFLQIIEDYG--FLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKIL 127

Query: 841 YDKSKVKLFTGKDFLHFNGS----------ETMKKILYKYGPLSVLLN--SDLIHDYNGT 888
           ++K++     GK +  +             + +K  +   G +   +   + + ++++G 
Sbjct: 128 HNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG- 186

Query: 889 PIRKNDETCSPYDLGHAVLLVGYGKQDNI-----PYWLVRNSWGPIGPDEGFFKIER-GN 942
             +K    C      HAV +VGYG   N       YW+VRNSWGP   DEG+FK++  G 
Sbjct: 187 --KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGP 244

Query: 943 NACGIEQIAGYATIDV 958
             C    I      +V
Sbjct: 245 THCHFNFIHSVVIFNV 260

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  184 bits (468), Expect = 2e-52
 Identities = 54/255 (21%), Positives = 90/255 (35%), Gaps = 41/255 (16%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
                D           DQ  C + W F+    LE    +K  +  + S   +  C K  
Sbjct: 10  CNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKG- 68

Query: 436 SGCGGCDGLEQPIEYT----HQAGLESEKDYPYR---------------NGNGEKFKCAY 476
                CD    P+E+         L +E +YPY                    +  K  +
Sbjct: 69  EHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILH 128

Query: 477 DKSKVKLFTGKDFLYFNGS----------ETMKKILYKYGPLSVGLN-SHLI-HFYNGTP 524
           +K++     GK +  +             + +K  +   G +   +   +++ + ++G  
Sbjct: 129 NKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG-- 186

Query: 525 IRKNDETCSPYDLGHAVLLVGYGKQDDI-----PYWLARNSWGPIGPDEGFFKIER-GNN 578
            +K    C      HAV +VGYG   +       YW+ RNSWGP   DEG+FK++  G  
Sbjct: 187 -KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPT 245

Query: 579 ACGIEQIAGYATIDV 593
            C    I      +V
Sbjct: 246 HCHFNFIHSVVIFNV 260

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  185 bits (471), Expect = 2e-53
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 16/222 (7%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +PD+ DWR+     P  +Q  CGSCWAFS    +EG   I TG L+  S+ QLV+C    
Sbjct: 3   LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62

Query: 71  SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNG 128
            GC G +  P+ ++     G+ SE+ YPY+  +G    C    +   +     + +  + 
Sbjct: 63  HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG---ICNSTVNAPVVSIDSYENVPSHN 119

Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
            ++++K +    P+SV +++       Y          +C+     HA+ +VGYG +++ 
Sbjct: 120 EQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIF---TGSCNI-SANHALTVVGYGTENDK 174

Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
            +W+V+NSWG    + G+ + ER        CGI + A Y  
Sbjct: 175 DFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  184 bits (470), Expect = 3e-53
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 16/222 (7%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +PD+ DWR+     P  +Q  CGSCWAFS    +EG   I TG L+  S+ QLV+C    
Sbjct: 3   LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62

Query: 802 SGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNG 859
            GC G +  P+ ++     G+ SE+ YPY+  +G    C    +   +     + +  + 
Sbjct: 63  HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG---ICNSTVNAPVVSIDSYENVPSHN 119

Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
            ++++K +    P+SV +++       Y          +C+     HA+ +VGYG +++ 
Sbjct: 120 EQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIF---TGSCNI-SANHALTVVGYGTENDK 174

Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
            +W+V+NSWG    + G+ + ER        CGI + A Y  
Sbjct: 175 DFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  182 bits (464), Expect = 2e-52
 Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 33/231 (14%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +PD+ DWR+     P  +Q  CGSCWAFS    +EG   I TG L+  S+ QLV+C    
Sbjct: 3   LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 62

Query: 436 SGCGGCDGL-EQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
            GC G  G      ++     G+ SE+ YPYR  +G    C    +           Y N
Sbjct: 63  HGCRG--GWMNPAFQFIVNNGGINSEETYPYRGQDG---ICNSTVNAPV---VSIDSYEN 114

Query: 494 ---GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLL 543
               +E   +      P+SV +++    F       + G        +C+     HA+ +
Sbjct: 115 VPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--------SCNI-SANHALTV 165

Query: 544 VGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
           VGYG ++D  +W+ +NSWG    + G+ + ER        CGI + A Y  
Sbjct: 166 VGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
              +C+     HA+ +VGYG ++D  +W+V+NSWG    + G+ + ER        CGI +
Sbjct: 152  TGSCNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITR 210

Query: 1018 IAGYAT 1023
             A Y  
Sbjct: 211  FASYPV 216

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  184 bits (469), Expect = 3e-53
 Identities = 69/221 (31%), Positives = 100/221 (45%), Gaps = 16/221 (7%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P + DWR K    P  +Q  CGSCWAFS    +EG   I TG L+E S+ +LV+C K   
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 72  GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 129
           GC G +   S++Y    G+ + K YPY+       KC              +  +  N  
Sbjct: 62  GCKGGYQTTSLQYVANNGVHTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCE 118

Query: 130 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
            +    L    PLSVL+ +       Y        D  C    L HAV  VGYG  D   
Sbjct: 119 TSFLGALAN-QPLSVLVEAGGKPFQLYKSGVF---DGPCGT-KLDHAVTAVGYGTSDGKN 173

Query: 188 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
           Y +++NSWGP   ++G+ +++R +      CG+ + + Y  
Sbjct: 174 YIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  184 bits (469), Expect = 3e-53
 Identities = 70/221 (31%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P + DWR K    P  +Q ACGSCWAFS    +EG   I TG L+E S+ +LV+C K   
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 860
           GC G +   S++Y    G+ + K YPY+       KC              +  +  N  
Sbjct: 62  GCKGGYQTTSLQYVANNGVHTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCE 118

Query: 861 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
            +    L    PLSVL+ +       Y        D  C    L HAV  VGYG  D   
Sbjct: 119 TSFLGALAN-QPLSVLVEAGGKPFQLYKSGVF---DGPCGT-KLDHAVTAVGYGTSDGKN 173

Query: 919 YWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
           Y +++NSWGP   ++G+ +++R +      CG+ + + Y  
Sbjct: 174 YIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  182 bits (464), Expect = 1e-52
 Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 29/228 (12%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P + DWR K    P  +Q ACGSCWAFS    +EG   I TG L+E S+ +LV+C K   
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 437 GCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-G 494
           GC G  G     ++Y    G+ + K YPY+    +++KC              +      
Sbjct: 62  GCKG--GYQTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKITGYKRVPSN 116

Query: 495 SET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
            ET     L    PLSV + +    F       ++G         C    L HAV  VGY
Sbjct: 117 CETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDG--------PCGT-KLDHAVTAVGY 166

Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
           G  D   Y + +NSWGP   ++G+ +++R +      CG+ + + Y  
Sbjct: 167 GTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 73.7 bits (182), Expect = 7e-15
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
            D  C    L HAV  VGYG  D   Y +++NSWGP   ++G+ +++R +      CG+ +
Sbjct: 150  DGPCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYK 208

Query: 1018 IAGYAT 1023
             + Y  
Sbjct: 209  SSYYPF 214

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  183 bits (468), Expect = 4e-53
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 20/224 (8%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+  DWR+K    P  +Q  CGSCWAFS    +EG   I+TG L ++S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60

Query: 71  SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 128
            GC+G +   +++   Q G+     YPY+        C   +             +    
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYN 117

Query: 129 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 186
              +   +    P+SV+L +       Y G         C    + HAV  VGYG     
Sbjct: 118 EGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIF---VGPCGN-KVDHAVAAVGYGP---- 168

Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
            Y L++NSWG    + G+ +I+RG       CG+   + Y   +
Sbjct: 169 NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  183 bits (468), Expect = 4e-53
 Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 20/224 (8%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR+K    P  +Q +CGSCWAFS    +EG   I+TG L ++S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60

Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNG 859
            GC+G +   +++   Q G+     YPY+        C   +             +    
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYN 117

Query: 860 SETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNI 917
              +   +    P+SV+L +       Y G         C    + HAV  VGYG     
Sbjct: 118 EGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIF---VGPCGN-KVDHAVAAVGYGP---- 168

Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
            Y L++NSWG    + G+ +I+RG       CG+   + Y   +
Sbjct: 169 NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  181 bits (462), Expect = 3e-52
 Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 33/231 (14%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P+  DWR+K    P  +Q +CGSCWAFS    +EG   I+TG L ++S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60

Query: 436 SGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN- 493
            GC G  G     ++   Q G+     YPY    G +  C   +                
Sbjct: 61  YGCNG--GYPWSALQLVAQYGIHYRNTYPYE---GVQRYCRSREKGPYAAKTDGVRQVQP 115

Query: 494 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 545
            +E  +   +    P+SV L +    F       + G         C    + HAV  VG
Sbjct: 116 YNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVG--------PCGN-KVDHAVAAVG 165

Query: 546 YGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
           YG      Y L +NSWG    + G+ +I+RG       CG+   + Y   +
Sbjct: 166 YGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 69.4 bits (171), Expect = 2e-13
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQ 1017
               C    + HAV  VGYG      Y L++NSWG    + G+ +I+RG       CG+  
Sbjct: 150  VGPCGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYT 204

Query: 1018 IAGYATID 1025
             + Y   +
Sbjct: 205  SSFYPVKN 212

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  182 bits (464), Expect = 1e-52
 Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 20/219 (9%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P++ DWR+K    P  +Q  CGSCWAFS    +EG   I TG+L+  S+ +L++C ++  
Sbjct: 2   PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61

Query: 72  GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 129
           GCDG +   S++Y    G+ +E++YPY+   G   +C     K        +  +  N  
Sbjct: 62  GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDE 118

Query: 130 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
            ++ + +    P+SV+ +S       Y G      +  C   +  HAV  VGYGK     
Sbjct: 119 ISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIY---EGPCGT-NTDHAVTAVGYGK----T 169

Query: 188 YWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 222
           Y L++NSWGP   ++G+ +I+R        CG+   + +
Sbjct: 170 YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  182 bits (464), Expect = 1e-52
 Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 20/219 (9%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P++ DWR+K    P  +Q  CGSCWAFS    +EG   I TG+L+  S+ +L++C ++  
Sbjct: 2   PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61

Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGS 860
           GCDG +   S++Y    G+ +E++YPY+   G   +C     K        +  +  N  
Sbjct: 62  GCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDE 118

Query: 861 ETMKKILYKYGPLSVLLNSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
            ++ + +    P+SV+ +S       Y G      +  C   +  HAV  VGYGK     
Sbjct: 119 ISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIY---EGPCGT-NTDHAVTAVGYGK----T 169

Query: 919 YWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 953
           Y L++NSWGP   ++G+ +I+R        CG+   + +
Sbjct: 170 YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  179 bits (458), Expect = 9e-52
 Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 33/226 (14%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P++ DWR+K    P  +Q  CGSCWAFS    +EG   I TG+L+  S+ +L++C ++  
Sbjct: 2   PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61

Query: 437 GCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-G 494
           GC G  G     ++Y    G+ +E++YPY     ++ +C     K        + Y    
Sbjct: 62  GCDG--GYQTTSLQYVVDNGVHTEREYPYE---KKQGRCRAKDKKGPKVYITGYKYVPAN 116

Query: 495 SET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 546
            E  + + +    P+SV  +S    F       Y G         C   +  HAV  VGY
Sbjct: 117 DEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEG--------PCGT-NTDHAVTAVGY 166

Query: 547 GKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 588
           GK     Y L +NSWGP   ++G+ +I+R        CG+   + +
Sbjct: 167 GK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 71.0 bits (175), Expect = 6e-14
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQ 1017
            +  C   +  HAV  VGYGK     Y L++NSWGP   ++G+ +I+R        CG+  
Sbjct: 150  EGPCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYT 204

Query: 1018 IAGY 1021
             + +
Sbjct: 205  SSFF 208

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  181 bits (462), Expect = 4e-52
 Identities = 74/238 (31%), Positives = 108/238 (45%), Gaps = 33/238 (13%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C    
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 802 S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHF 857
           + GC+G   + + E+   + G+ +E +YPY+  +G    C   K      +      +  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118

Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 908
           N    + K +    P+SV +++              + G        +C   +L H V +
Sbjct: 119 NDENALLKAVAN-QPVSVAIDAG--GSDFQFYSEGVFTG--------SCGT-ELDHGVAI 166

Query: 909 VGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATIDVVKN 961
           VGYG   D   YW V+NSWGP   ++G+ ++ERG       CGI   A Y       N
Sbjct: 167 VGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNN 224

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  180 bits (459), Expect = 1e-51
 Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 33/232 (14%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C    
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 71  S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHF 126
           + GC+G   + + E+   + G+ +E +YPY+  +G    C   K      +      +  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPE 118

Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 177
           N    + K +    P+SV +++              + G        +C   +L H V +
Sbjct: 119 NDENALLKAVAN-QPVSVAIDAG--GSDFQFYSEGVFTG--------SCGT-ELDHGVAI 166

Query: 178 VGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 224
           VGYG   D   YW V+NSWGP   ++G+ ++ERG       CGI   A Y  
Sbjct: 167 VGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  180 bits (459), Expect = 1e-51
 Identities = 74/231 (32%), Positives = 102/231 (44%), Gaps = 30/231 (12%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C    
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 436 S-GCGGCDGL-EQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
           + GC G  GL +   E+   + G+ +E +YPY   +G    C   K      +       
Sbjct: 62  NQGCNG--GLMDYAFEFIKQRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENV 116

Query: 493 -NGSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLV 544
               E          P+SV +++    F       + G        +C   +L H V +V
Sbjct: 117 PENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG--------SCGT-ELDHGVAIV 167

Query: 545 GYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 590
           GYG   D   YW  +NSWGP   ++G+ ++ERG       CGI   A Y  
Sbjct: 168 GYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERG----NNACGIE 1016
              +C   +L H V +VGYG   D   YW V+NSWGP   ++G+ ++ERG       CGI 
Sbjct: 153  TGSCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIA 211

Query: 1017 QIAGYAT 1023
              A Y  
Sbjct: 212  MEASYPI 218

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 74.5 bits (184), Expect = 4e-15
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQI 1018
               C    + HAV +VGYG +  I YW+V+NSWG    +EG+ +I+R       CGI + 
Sbjct: 153  TGPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKK 211

Query: 1019 AGYAT 1023
            A Y  
Sbjct: 212  ASYPV 216

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  180 bits (458), Expect = 5e-51
 Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 41/254 (16%)

Query: 4   EVEKDGPVPDAWDWRKK---NVTGPAGDQAD---CGSCWAFSIAGMLEGQYAIKTG---K 54
           E      +P +WDWR     N      +Q     CGSCWA +    +  +  IK      
Sbjct: 29  EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 88

Query: 55  LVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE---------- 104
               S   +++C      C+G       +Y HQ G+  E    Y+  + E          
Sbjct: 89  STLLSVQNVIDCGN-AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC 147

Query: 105 -KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNG---TP 158
            +FK  +      L+   D+   +G E M   +Y  GP+S  +     L + Y G     
Sbjct: 148 NEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLAN-YTGGIYA- 205

Query: 159 IRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACG--- 215
                E      + H V + G+G  D   YW+VRNSWG    + G+ +I       G   
Sbjct: 206 -----EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGA 260

Query: 216 -----IEQIAGYAT 224
                IE+   +  
Sbjct: 261 RYNLAIEEHCTFGD 274

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  180 bits (458), Expect = 6e-51
 Identities = 60/256 (23%), Positives = 93/256 (36%), Gaps = 44/256 (17%)

Query: 369 EVEKDGPVPDAWDWRKK---NVTGPAGDQAA---CGSCWAFSIAGMLEGQYAIKTG---K 419
           E      +P +WDWR     N      +Q     CGSCWA +    +  +  IK      
Sbjct: 29  EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 88

Query: 420 LVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNGNGE------- 470
               S   +++C       G C+G       +Y HQ G+  E    Y+  + E       
Sbjct: 89  STLLSVQNVIDC----GNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQC 144

Query: 471 ----KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-SHLIHFYNG--- 522
               +FK  +      L+   D+   +G E M   +Y  GP+S G+  +  +  Y G   
Sbjct: 145 GTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIY 204

Query: 523 TPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACG- 581
                  E      + H V + G+G  D   YW+ RNSWG    + G+ +I       G 
Sbjct: 205 A------EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGK 258

Query: 582 -------IEQIAGYAT 590
                  IE+   +  
Sbjct: 259 GARYNLAIEEHCTFGD 274

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  179 bits (456), Expect = 1e-50
 Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 41/254 (16%)

Query: 735 EVEKDGPVPDAWDWRKK---NVTGPAGDQAA---CGSCWAFSIAGMLEGQYAIKTG---K 785
           E      +P +WDWR     N      +Q     CGSCWA +    +  +  IK      
Sbjct: 29  EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 88

Query: 786 LVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE---------- 835
               S   +++C      C+G       +Y HQ G+  E    Y+  + E          
Sbjct: 89  STLLSVQNVIDCGN-AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC 147

Query: 836 -KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNG---TP 889
            +FK  +      L+   D+   +G E M   +Y  GP+S  +     L + Y G     
Sbjct: 148 NEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLAN-YTGGIYA- 205

Query: 890 IRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACG--- 946
                E      + H V + G+G  D   YW+VRNSWG    + G+ +I       G   
Sbjct: 206 -----EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGA 260

Query: 947 -----IEQIAGYAT 955
                IE+   +  
Sbjct: 261 RYNLAIEEHCTFGD 274

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG------- 1014
             E      + H V + G+G  D   YW+VRNSWG    + G+ +I       G       
Sbjct: 205  AEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL 264

Query: 1015 -IEQIAGYAT 1023
             IE+   +  
Sbjct: 265  AIEEHCTFGD 274

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  176 bits (449), Expect = 1e-50
 Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 18/219 (8%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+  DWRKK    P  +Q  CGSCWAFS    +E    I+TG L+  S+ +LV+C K+ 
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60

Query: 71  SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 129
            GC G  F  + +Y     G++++ +YPYK   G    C      V +  G + + F  +
Sbjct: 61  HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAASKVVSI-DGYNGVPFC-N 115

Query: 130 ETMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
           E   K      P +V +++       Y+               L H V +VGY       
Sbjct: 116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIF----SGPCGTKLNHGVTIVGYQA----N 167

Query: 188 YWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
           YW+VRNSWG    ++G+ ++ R  G   CGI ++  Y T
Sbjct: 168 YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  176 bits (448), Expect = 1e-50
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 18/219 (8%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWRKK    P  +Q +CGSCWAFS    +E    I+TG L+  S+ +LV+C K+ 
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60

Query: 802 SGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGS 860
            GC G  F  + +Y     G++++ +YPYK   G    C      V +  G + + F  +
Sbjct: 61  HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAASKVVSI-DGYNGVPFC-N 115

Query: 861 ETMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
           E   K      P +V +++       Y+               L H V +VGY       
Sbjct: 116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIF----SGPCGTKLNHGVTIVGYQA----N 167

Query: 919 YWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
           YW+VRNSWG    ++G+ ++ R  G   CGI ++  Y T
Sbjct: 168 YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  172 bits (438), Expect = 3e-49
 Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 23/222 (10%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P+  DWRKK    P  +Q +CGSCWAFS    +E    I+TG L+  S+ +LV+C K+ 
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60

Query: 436 SGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
            GC G  G      +Y     G++++ +YPY+   G    C      V +  G    Y  
Sbjct: 61  HGCLG--GAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAASKVVSI-DG----YNG 110

Query: 494 ---GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 550
               +E   K      P +V +++    F   +    +    +   L H V +VGY    
Sbjct: 111 VPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT--KLNHGVTIVGYQA-- 166

Query: 551 DIPYWLARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 590
              YW+ RNSWG    ++G+ ++ R  G   CGI ++  Y T
Sbjct: 167 --NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYA 1022
                 L H V +VGY       YW+VRNSWG    ++G+ ++ R  G   CGI ++  Y 
Sbjct: 150  PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205

Query: 1023 T 1023
            T
Sbjct: 206  T 206

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  175 bits (446), Expect = 2e-49
 Identities = 69/270 (25%), Positives = 105/270 (38%), Gaps = 52/270 (19%)

Query: 738 KDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 791
           +D  +P ++D R++           DQ +CGS WAF     +  +  I T     VE S 
Sbjct: 3   EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62

Query: 792 SQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEK 836
             L+ C    C  GC+G +   +  +  + GL S   Y       PY       + NG +
Sbjct: 63  EDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGAR 122

Query: 837 FKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN- 878
             C  +                   + K +    +   N  + +   +YK GP+    + 
Sbjct: 123 PPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 182

Query: 879 -SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDE 933
            SD +  Y      K+            GHA+ ++G+G ++  PYWLV NSW    G D 
Sbjct: 183 YSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DN 234

Query: 934 GFFKIERGNNACGIEQIAGYATIDVVKNDE 963
           GFFKI RG + CGIE           +  E
Sbjct: 235 GFFKILRGQDHCGIESEVVAGIPRTDQYWE 264

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  175 bits (446), Expect = 2e-49
 Identities = 68/265 (25%), Positives = 102/265 (38%), Gaps = 52/265 (19%)

Query: 7   KDGPVPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 60
           +D  +P ++D R++           DQ  CGS WAF     +  +  I T     VE S 
Sbjct: 3   EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62

Query: 61  SQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDY-------PYK------NANGEK 105
             L+ C    C  GC+G +   +  +  + GL S   Y       PY       + NG +
Sbjct: 63  EDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGAR 122

Query: 106 FKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN- 147
             C  +                   + K +    +   N  + +   +YK GP+    + 
Sbjct: 123 PPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 182

Query: 148 -SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDE 202
            SD +  Y      K+            GHA+ ++G+G ++  PYWLV NSW    G D 
Sbjct: 183 YSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DN 234

Query: 203 GFFKIERGNNACGIEQIAGYATIDV 227
           GFFKI RG + CGIE          
Sbjct: 235 GFFKILRGQDHCGIESEVVAGIPRT 259

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  173 bits (441), Expect = 8e-49
 Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 51/265 (19%)

Query: 372 KDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL--VEFSK 425
           +D  +P ++D R++           DQ +CGS WAF     +  +  I T     VE S 
Sbjct: 3   EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62

Query: 426 SQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNG-------------NGE 470
             L+ C     G  GC+G    +   +  + GL S   Y    G             NG 
Sbjct: 63  EDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGA 121

Query: 471 KFKCAYDK-----------------SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN 513
           +  C  +                   + K +    +   N  + +   +YK GP+    +
Sbjct: 122 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 181

Query: 514 SHL-IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPI-GPDE 568
            +     Y      K+            GHA+ ++G+G ++  PYWL  NSW    G D 
Sbjct: 182 VYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DN 234

Query: 569 GFFKIERGNNACGIEQIAGYATIDV 593
           GFFKI RG + CGIE          
Sbjct: 235 GFFKILRGQDHCGIESEVVAGIPRT 259

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAG 1020
                     GHA+ ++G+G ++  PYWLV NSW    G D GFFKI RG + CGIE    
Sbjct: 195  QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVV 253

Query: 1021 YATIDV 1026
                  
Sbjct: 254  AGIPRT 259

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  175 bits (445), Expect = 2e-49
 Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 36/244 (14%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P + DWR+K       DQ  CGSCWAFS    +EG  AI+TG LV  S+ +L++C    
Sbjct: 4   LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63

Query: 802 S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-----FTGKDF 854
           + GC G   + + EY  +  GL +E  YPY+ A G    C   ++           G   
Sbjct: 64  NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGHQD 120

Query: 855 LHFNGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHA 905
           +  N  E + + +    P+SV + +              + G         C   +L H 
Sbjct: 121 VPANSEEDLARAVAN-QPVSVAVEAS--GKAFMFYSEGVFTG--------ECGT-ELDHG 168

Query: 906 VLLVGYGK-QDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATIDVVK 960
           V +VGYG  +D   YW V+NSWGP   ++G+ ++E+ + A    CGI   A Y      K
Sbjct: 169 VAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYSK 228

Query: 961 NDET 964
              T
Sbjct: 229 PKPT 232

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  175 bits (445), Expect = 2e-49
 Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 36/235 (15%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P + DWR+K       DQ  CGSCWAFS    +EG  AI+TG LV  S+ +L++C    
Sbjct: 4   LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63

Query: 71  S-GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-----FTGKDF 123
           + GC G   + + EY  +  GL +E  YPY+ A G    C   ++           G   
Sbjct: 64  NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGHQD 120

Query: 124 LHFNGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHA 174
           +  N  E + + +    P+SV + +              + G         C   +L H 
Sbjct: 121 VPANSEEDLARAVAN-QPVSVAVEAS--GKAFMFYSEGVFTG--------ECGT-ELDHG 168

Query: 175 VLLVGYGK-QDNIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
           V +VGYG  +D   YW V+NSWGP   ++G+ ++E+ + A    CGI   A Y  
Sbjct: 169 VAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  174 bits (444), Expect = 2e-49
 Identities = 71/234 (30%), Positives = 104/234 (44%), Gaps = 33/234 (14%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P + DWR+K       DQ  CGSCWAFS    +EG  AI+TG LV  S+ +L++C    
Sbjct: 4   LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDT-- 61

Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG-KDFLY 491
           +   GC G  ++   EY  +  GL +E  YPYR   G    C   ++            +
Sbjct: 62  ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGH 118

Query: 492 FN---GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAV 541
            +    SE          P+SV + +    F       + G         C   +L H V
Sbjct: 119 QDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTG--------ECGT-ELDHGV 169

Query: 542 LLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
            +VGYG  +D   YW  +NSWGP   ++G+ ++E+ + A    CGI   A Y  
Sbjct: 170 AVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIE 1016
               C   +L H V +VGYG  +D   YW V+NSWGP   ++G+ ++E+ + A    CGI 
Sbjct: 158  TGECGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIA 216

Query: 1017 QIAGYAT 1023
              A Y  
Sbjct: 217  MEASYPV 223

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  177 bits (450), Expect = 2e-49
 Identities = 75/333 (22%), Positives = 118/333 (35%), Gaps = 70/333 (21%)

Query: 676 KERFEYFKQDGHKKHERYGTS-----EFSDRSPEEILCKTGFKWSERTYERIVADREKVE 730
           +  F     +      +  T+      F +     +    G         + V       
Sbjct: 4   RPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMF----- 58

Query: 731 KMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL 786
                  +D  +P ++D R++           DQ +CGSCWAF     +  +  I T   
Sbjct: 59  ------TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAH 112

Query: 787 --VEFSKSQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK------------ 830
             VE S   L+ C    C  GC+G +   +  +  + GL S   Y               
Sbjct: 113 VSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCE 172

Query: 831 -NANGEKFKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGP 872
            + NG +  C  +                   + K +    +   N  + +   +YK GP
Sbjct: 173 HHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGP 232

Query: 873 LSVLLN--SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWG 927
           +    +  SD +  Y      K+            GHA+ ++G+G ++  PYWLV NSW 
Sbjct: 233 VEGAFSVYSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWN 285

Query: 928 PI-GPDEGFFKIERGNNACGIEQ--IAGYATID 957
              G D GFFKI RG + CGIE   +AG    D
Sbjct: 286 TDWG-DNGFFKILRGQDHCGIESEVVAGIPRTD 317

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  175 bits (446), Expect = 6e-49
 Identities = 70/267 (26%), Positives = 105/267 (39%), Gaps = 54/267 (20%)

Query: 6   EKDGPVPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKL--VEFS 59
            +D  +P ++D R++           DQ  CGSCWAF     +  +  I T     VE S
Sbjct: 59  TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVS 118

Query: 60  KSQLVECA-KQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGE 104
              L+ C    C  GC+G +   +  +  + GL S   Y                + NG 
Sbjct: 119 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 178

Query: 105 KFKCAYDK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 147
           +  C  +                   + K +    +   N  + +   +YK GP+    +
Sbjct: 179 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 238

Query: 148 --SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPD 201
             SD +  Y      K+            GHA+ ++G+G ++  PYWLV NSW    G D
Sbjct: 239 VYSDFLL-Y------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-D 290

Query: 202 EGFFKIERGNNACGIEQ--IAGYATID 226
            GFFKI RG + CGIE   +AG    D
Sbjct: 291 NGFFKILRGQDHCGIESEVVAGIPRTD 317

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  174 bits (442), Expect = 2e-48
 Identities = 73/333 (21%), Positives = 114/333 (34%), Gaps = 69/333 (20%)

Query: 310 KERFEYFKQDGHKKHERYGTS-----EFSDRSPEEILCKTGFKWSERTYERIVADREKVE 364
           +  F     +      +  T+      F +     +    G         + V       
Sbjct: 4   RPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMF----- 58

Query: 365 KMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL 420
                  +D  +P ++D R++           DQ +CGSCWAF     +  +  I T   
Sbjct: 59  ------TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAH 112

Query: 421 --VEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNG--------- 467
             VE S   L+ C     G  GC+G    +   +  + GL S   Y    G         
Sbjct: 113 VSVEVSAEDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPC 171

Query: 468 ----NGEKFKCAYDK-----------------SKVKLFTGKDFLYFNGSETMKKILYKYG 506
               NG +  C  +                   + K +    +   N  + +   +YK G
Sbjct: 172 EHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNG 231

Query: 507 PLSVGLNSHL-IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWG 562
           P+    + +     Y      K+            GHA+ ++G+G ++  PYWL  NSW 
Sbjct: 232 PVEGAFSVYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWN 285

Query: 563 PI-GPDEGFFKIERGNNACGIEQ--IAGYATID 592
              G D GFFKI RG + CGIE   +AG    D
Sbjct: 286 TDWG-DNGFFKILRGQDHCGIESEVVAGIPRTD 317

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQ--I 1018
                     GHA+ ++G+G ++  PYWLV NSW    G D GFFKI RG + CGIE   +
Sbjct: 252  QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVV 310

Query: 1019 AGYATID 1025
            AG    D
Sbjct: 311  AGIPRTD 317

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  174 bits (444), Expect = 2e-49
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 52/260 (20%)

Query: 11  VPDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 64
           +P ++D RKK           DQ+ CGSCWAF     +  +  I++G  + VE S   L+
Sbjct: 3   IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62

Query: 65  ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGEKFKCAY 110
            C + C  GC+G    P+ +Y  + G+ +                    +  G+   C  
Sbjct: 63  SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122

Query: 111 DK------------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDL 150
                               ++ K      +   N  + ++K + KYGP+        D 
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDF 182

Query: 151 IHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFK 206
           ++ Y      K+            GHA+ ++G+G ++  PYWL+ NSW    G + G+F+
Sbjct: 183 LN-Y------KSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYFR 234

Query: 207 IERGNNACGIEQIAGYATID 226
           I RG + C IE       I+
Sbjct: 235 IVRGRDECSIESEVTAGRIN 254

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  174 bits (443), Expect = 3e-49
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 52/260 (20%)

Query: 742 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 795
           +P ++D RKK           DQ+ CGSCWAF     +  +  I++G  + VE S   L+
Sbjct: 3   IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62

Query: 796 ECAKQCS-GCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGEKFKCAY 841
            C + C  GC+G    P+ +Y  + G+ +                    +  G+   C  
Sbjct: 63  SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122

Query: 842 DK------------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDL 881
                               ++ K      +   N  + ++K + KYGP+        D 
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDF 182

Query: 882 IHDYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPI-GPDEGFFK 937
           ++ Y      K+            GHA+ ++G+G ++  PYWL+ NSW    G + G+F+
Sbjct: 183 LN-Y------KSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYFR 234

Query: 938 IERGNNACGIEQIAGYATID 957
           I RG + C IE       I+
Sbjct: 235 IVRGRDECSIESEVTAGRIN 254

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  173 bits (442), Expect = 4e-49
 Identities = 63/261 (24%), Positives = 101/261 (38%), Gaps = 53/261 (20%)

Query: 376 VPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLV 429
           +P ++D RKK           DQ+ CGSCWAF     +  +  I++G  + VE S   L+
Sbjct: 3   IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62

Query: 430 ECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRNG-------------NGEKFKC 474
            C + C    GC+G  L    +Y  + G+ +        G              G+   C
Sbjct: 63  SCCESCGL--GCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPC 120

Query: 475 AYDK------------------SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHL 516
                                 ++ K      +   N  + ++K + KYGP+  G   + 
Sbjct: 121 GSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE 180

Query: 517 -IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPI-GPDEGFF 571
               Y      K+            GHA+ ++G+G ++  PYWL  NSW    G + G+F
Sbjct: 181 DFLNY------KSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYF 233

Query: 572 KIERGNNACGIEQIAGYATID 592
           +I RG + C IE       I+
Sbjct: 234 RIVRGRDECSIESEVTAGRIN 254

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 95.4 bits (238), Expect = 5e-22
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACGIEQIAG 1020
                     GHA+ ++G+G ++  PYWL+ NSW    G + G+F+I RG + C IE    
Sbjct: 191  KHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYFRIVRGRDECSIESEVT 249

Query: 1021 YATID 1025
               I+
Sbjct: 250  AGRIN 254

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  173 bits (441), Expect = 3e-49
 Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 33/233 (14%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 69
           +P   DWR +    P  DQ DCGSCWAFS  G LEG +  KTGKLV  S+ +L++C++  
Sbjct: 7   LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66

Query: 70  -CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHF 126
               C G     + +Y     G+ SE  YPY   +    +C     +  +   G   +  
Sbjct: 67  GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE---ECRAQSCEKVVKILGFKDVPR 123

Query: 127 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 177
                MK  L K  P+S+ + +D             ++         +C   DL H VLL
Sbjct: 124 RSEAAMKAALAK-SPVSIAIEAD--QMPFQFYHEGVFDA--------SCGT-DLDHGVLL 171

Query: 178 VGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI 225
           VGYG  K+    +W+++NSWG     +G+  +         CG+   A +  +
Sbjct: 172 VGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  172 bits (439), Expect = 4e-49
 Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 33/233 (14%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ- 800
           +P   DWR +    P  DQ  CGSCWAFS  G LEG +  KTGKLV  S+ +L++C++  
Sbjct: 7   LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66

Query: 801 -CSGCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHF 857
               C G     + +Y     G+ SE  YPY   +    +C     +  +   G   +  
Sbjct: 67  GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE---ECRAQSCEKVVKILGFKDVPR 123

Query: 858 NGSETMKKILYKYGPLSVLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLL 908
                MK  L K  P+S+ + +D             ++         +C   DL H VLL
Sbjct: 124 RSEAAMKAALAK-SPVSIAIEAD--QMPFQFYHEGVFDA--------SCGT-DLDHGVLL 171

Query: 909 VGYG--KQDNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI 956
           VGYG  K+    +W+++NSWG     +G+  +         CG+   A +  +
Sbjct: 172 VGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  172 bits (439), Expect = 5e-49
 Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 34/234 (14%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P   DWR +    P  DQ  CGSCWAFS  G LEG +  KTGKLV  S+ +L++C++  
Sbjct: 7   LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA- 65

Query: 436 SGCGGCDG--LEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF 492
            G   C G  +    +Y     G+ SE  YPY   +    +C     +      K   + 
Sbjct: 66  EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE---ECRAQSCEK---VVKILGFK 119

Query: 493 N---GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVL 542
           +    SE   K      P+S+ + +  + F       ++         +C   DL H VL
Sbjct: 120 DVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDA--------SCGT-DLDHGVL 170

Query: 543 LVGYGKQDD--IPYWLARNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI 591
           LVGYG   +    +W+ +NSWG     +G+  +         CG+   A +  +
Sbjct: 171 LVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 962  DETCSPYDLGHAVLLVGYGKQDD--IPYWLVRNSWGPIGPDEGFFKIERG---NNACGIE 1016
            D +C   DL H VLLVGYG   +    +W+++NSWG     +G+  +         CG+ 
Sbjct: 158  DASCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLL 216

Query: 1017 QIAGYATI 1024
              A +  +
Sbjct: 217  LDASFPVM 224

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  170 bits (432), Expect = 3e-48
 Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 14/222 (6%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P + DWRKK       DQ  CG CWAF   G +EG  AI TG+L+  S+ Q+V+C     
Sbjct: 2   PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61

Query: 72  GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
              G   + +  +     G+ S+ +YPY   +G    C  +K       G  + +   S 
Sbjct: 62  XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDG--YTNVPNSS 116

Query: 131 TMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDE-TCSPYDLGHAVLLVGYGKQ-DNI 186
           +         P+SV + +       Y G  I      +  P  + H VL+VGYG    N 
Sbjct: 117 SALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNA 176

Query: 187 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 224
            YW+V+NSWG     +G+  I R  N     C I+    Y T
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  170 bits (431), Expect = 3e-48
 Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 14/222 (6%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P + DWRKK       DQ ACG CWAF   G +EG  AI TG+L+  S+ Q+V+C     
Sbjct: 2   PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61

Query: 803 GCDGCFFEPSIEY-THQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
              G   + +  +     G+ S+ +YPY   +G    C  +K       G  + +   S 
Sbjct: 62  XXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDG--YTNVPNSS 116

Query: 862 TMKKILYKYGPLSVLLNSDL--IHDYNGTPIRKNDE-TCSPYDLGHAVLLVGYGKQ-DNI 917
           +         P+SV + +       Y G  I      +  P  + H VL+VGYG    N 
Sbjct: 117 SALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNA 176

Query: 918 PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 955
            YW+V+NSWG     +G+  I R  N     C I+    Y T
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  166 bits (422), Expect = 6e-47
 Identities = 67/223 (30%), Positives = 94/223 (42%), Gaps = 15/223 (6%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P + DWRKK       DQ ACG CWAF   G +EG  AI TG+L+  S+ Q+V+C     
Sbjct: 2   PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61

Query: 437 GCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
              G D  +    +     G+ S+ +YPY   +G    C  +K       G  +     S
Sbjct: 62  XXXGGD-ADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDG--YTNVPNS 115

Query: 496 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDE-TCSPYDLGHAVLLVGYGKQDD- 551
            +         P+SV + +       Y G  I      +  P  + H VL+VGYG     
Sbjct: 116 SSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN 175

Query: 552 IPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYAT 590
             YW+ +NSWG     +G+  I R  N     C I+    Y T
Sbjct: 176 ADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 964  TCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQI 1018
            +  P  + H VL+VGYG       YW+V+NSWG     +G+  I R  N     C I+  
Sbjct: 154  SDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAW 213

Query: 1019 AGYAT 1023
              Y T
Sbjct: 214  GSYPT 218

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  167 bits (424), Expect = 2e-46
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 28/236 (11%)

Query: 369 EVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQL 428
           E      +P   D           DQ   GSC A ++A  ++ +  I   +  EF  S+L
Sbjct: 50  EKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFER-IHDKQSPEFIPSRL 105

Query: 429 VEC--AKQCSGCGGCDG---LEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKL 483
                 ++  G    D    +   I+  H+ G+  EK++PY +   +     +       
Sbjct: 106 FIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPAS 165

Query: 484 FTGKDFLYFNGS--------------ETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRK 527
               D  Y +                + +K  L    P   G + +   +   +      
Sbjct: 166 KKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP 225

Query: 528 NDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGI 582
                   + GHAVL VGY   D+I ++  RNSWG    ++G+F +     +   +
Sbjct: 226 LPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  164 bits (416), Expect = 3e-45
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 29/236 (12%)

Query: 4   EVEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQL 63
           E      +P   D           DQ   GSC A ++A  ++ +  I   +  EF  S+L
Sbjct: 50  EKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFER-IHDKQSPEFIPSRL 105

Query: 64  VECAKQ-----CSGCD-GCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS---- 113
                +         D G      I+  H+ G+  EK++PY +   +     +       
Sbjct: 106 FIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPAS 165

Query: 114 ---------KVKLFTGKDFLHFNGSET-MKKILYKYGPLSV--LLNSDLIHDYNGTPIRK 161
                      + +   ++         +K  L    P      + +  + + +      
Sbjct: 166 KKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP 225

Query: 162 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 216
                   + GHAVL VGY   D I ++ +RNSWG    ++G+F +     +   +
Sbjct: 226 LPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  163 bits (413), Expect = 6e-45
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 29/236 (12%)

Query: 735 EVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQL 794
           E      +P   D           DQ   GSC A ++A  ++ +  I   +  EF  S+L
Sbjct: 50  EKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFER-IHDKQSPEFIPSRL 105

Query: 795 VECAKQ-----CSGCD-GCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKS---- 844
                +         D G      I+  H+ G+  EK++PY +   +     +       
Sbjct: 106 FIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPAS 165

Query: 845 ---------KVKLFTGKDFLHFNGSET-MKKILYKYGPLSV--LLNSDLIHDYNGTPIRK 892
                      + +   ++         +K  L    P      + +  + + +      
Sbjct: 166 KKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP 225

Query: 893 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 947
                   + GHAVL VGY   D I ++ +RNSWG    ++G+F +     +   +
Sbjct: 226 LPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 959  VKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGI 1015
            +         + GHAVL VGY   D+I ++ +RNSWG    ++G+F +     +   +
Sbjct: 224  IPLPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 747 DWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK------- 799
              K+N      +Q   G+CW +S    LE +         + S+   V           
Sbjct: 15  TTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAA 74

Query: 800 -----QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKF 837
                  S   G  F  ++      GL  E++        +  
Sbjct: 75  VRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMRPGMMYADTL 117

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 16  DWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK------- 68
              K+N      +Q   G+CW +S    LE +         + S+   V           
Sbjct: 15  TTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAA 74

Query: 69  -----QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKF 106
                  S   G  F  ++      GL  E++        +  
Sbjct: 75  VRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMRPGMMYADTL 117

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 49.5 bits (117), Expect = 4e-06
 Identities = 11/54 (20%), Positives = 18/54 (33%)

Query: 381 DWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ 434
              K+N      +Q   G+CW +S    LE +         + S+   V     
Sbjct: 15  TTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYL 68

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSE 331
              +   +  + F +F     + YA +EE + R+  FK        H ++   Y    + 
Sbjct: 13  IWEWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNH 72

Query: 332 FSDRSPEEILCK-TGFKWSER 351
           F D S +E   K  GFK S  
Sbjct: 73  FGDLSRDEFRRKYLGFKKSRN 93

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----DGH-KKHERY--GTSE 697
              +   +  + F +F     + YA +EE + R+  FK        H ++   Y    + 
Sbjct: 13  IWEWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNH 72

Query: 698 FSDRSPEEILCK-TGFKWSER 717
           F D S +E   K  GFK S  
Sbjct: 73  FGDLSRDEFRRKYLGFKKSRN 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1026
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	100.0
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	100.0
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	100.0
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	100.0
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	100.0
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	100.0
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	100.0
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	100.0
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	100.0
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.97
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.96
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	99.29
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	99.24
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	99.14
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	99.1
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	96.98
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	96.73
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	96.66
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	95.68
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	95.41
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	95.14

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=3e-70  Score=612.74  Aligned_cols=297  Identities=30%  Similarity=0.595  Sum_probs=251.8

Q ss_pred             ChhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHh-hhcCCCCCc
Q psy7460         284 DNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEIL-CKTGFKWSE  350 (1026)
Q Consensus       284 ~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~  350 (1026)
                      .++.+..+|++||++|+|.|.+.+|+.+|++||++|++            ..++++|+|+|+|||.|||+ .+++.+.+.
T Consensus        14 ~~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~~~~~~~   93 (331)
T 3qj3_A           14 PSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPA   93 (331)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHSCCCCCS
T ss_pred             CCHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhccccccc
Confidence            34567889999999999999999999999999999953            24567899999999999999 677765432


Q ss_pred             cchhhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCC--CccCCHHHH
Q psy7460         351 RTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGK--LVEFSKSQL  428 (1026)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~--~~~lS~q~l  428 (1026)
                      .....   ................+||++||||++|+||||||||.||||||||++++||++++|+++.  ++.||+|+|
T Consensus        94 ~~~~~---~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~L  170 (331)
T 3qj3_A           94 DLHKN---GIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQL  170 (331)
T ss_dssp             STTTT---CEEECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHH
T ss_pred             ccccc---CcccccccccccccccCCCcceecccCCccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence            11100   0000000000001234799999999999999999999999999999999999999999999  999999999


Q ss_pred             HhhhcCCCCCCCCCCCc-hHHHHHHhC-CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHc
Q psy7460         429 VECAKQCSGCGGCDGLE-QPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYK  504 (1026)
Q Consensus       429 vdC~~~~~gC~G~~G~~-~a~~~~~~~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~  504 (1026)
                      +||+..+.||+|  |.+ .|++|+.+. ||++|++|||.+.+.   .|........ +.+.+|..++  ++++||++|++
T Consensus       171 vdC~~~~~GC~G--G~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~v~~~~e~~lk~al~~  244 (331)
T 3qj3_A          171 VDCVPNALGCSG--GWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVA-ARLSGYVYLSGPDENMLADMVAT  244 (331)
T ss_dssp             HHHCTTSCGGGC--CCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCTTSEE-ECCSEEEEESSCCHHHHHHHHHH
T ss_pred             hhhccCCCCCCC--CCHHHHHHHHHHcCCcCcccccCccCCCC---CCCCCcccce-eEeeEEEEeCCCCHHHHHHHHHh
Confidence            999987889999  999 999998766 999999999999888   8987765543 4778888775  89999999999


Q ss_pred             CCCEEEEEecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-Ccccc
Q psy7460         505 YGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI  582 (1026)
Q Consensus       505 ~gPv~v~i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi  582 (1026)
                      +|||+|+|++. .|++|++|||.  .+.|+...++|||+|||||+++|++|||||||||+.|||+|||||+|+. |.|||
T Consensus       245 ~GPV~v~i~a~~~f~~Y~~Gvy~--~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI  322 (331)
T 3qj3_A          245 KGPVAVAFDADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGI  322 (331)
T ss_dssp             HCCEEEEECCCTTGGGEEEEEEC--CTTCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGT
T ss_pred             CCCEEEEEEcccccccccCceEe--CCCCCCCcCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCc
Confidence            99999999995 49999999995  4568777899999999999999999999999999999999999999998 99999


Q ss_pred             cceeeeeEE
Q psy7460         583 EQIAGYATI  591 (1026)
Q Consensus       583 ~~~~~~~~~  591 (1026)
                      ++.++||++
T Consensus       323 ~~~~~~p~v  331 (331)
T 3qj3_A          323 AGVASVPTL  331 (331)
T ss_dssp             TTSCEEEEC
T ss_pred             CCceeeeeC
Confidence            999999974

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=2.9e-70  Score=610.90  Aligned_cols=291  Identities=29%  Similarity=0.592  Sum_probs=249.1

Q ss_pred             hhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHhhhcCCCCCccc
Q psy7460         285 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEILCKTGFKWSERT  352 (1026)
Q Consensus       285 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~~~~~~~~~~~~  352 (1026)
                      +..+..+|++||++|+|.|.+.+|+.+|+.||++|++            ..++++|+|+|+|||.|||+.++|.+.....
T Consensus        20 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~g~~~~~~~   99 (329)
T 3qt4_A           20 KSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQKP   99 (329)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHHHHHHTCCC--
T ss_pred             HHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHHhcCCcccccc
Confidence            4467789999999999999999999999999999952            2467889999999999999877665432111


Q ss_pred             hhhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhh
Q psy7460         353 YERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA  432 (1026)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~  432 (1026)
                      ...     ........  ....+||++||||++ +||||||||.||||||||++++||++++|++++++.||+|+|+||+
T Consensus       100 ~~~-----~~~~~~~~--~~~~~lP~~~DwR~~-~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC~  171 (329)
T 3qt4_A          100 KHP-----ENLRMPYV--SSKKPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCS  171 (329)
T ss_dssp             ---------CCEEECC--CCCSCCCSCEECTTT-SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHC
T ss_pred             ccc-----cccccccc--CCccCCCCCEEcccc-ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHhc
Confidence            100     00000011  112479999999999 9999999999999999999999999999999999999999999999


Q ss_pred             cC--CCCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCC
Q psy7460         433 KQ--CSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGP  507 (1026)
Q Consensus       433 ~~--~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gP  507 (1026)
                      ..  +.||+|  |.+ .|++|+.+.||++|++|||.+.++   .|........ +.+.+|..++  ++++||++|+++||
T Consensus       172 ~~~g~~GC~G--G~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~v~~~~e~~lk~al~~~GP  245 (329)
T 3qt4_A          172 SSYGNAGCDG--GWMDSAFSYIHDYGIMSESAYPYEAQGD---YCRFDSSQSV-TTLSGYYDLPSGDENSLADAVGQAGP  245 (329)
T ss_dssp             GGGTCCTTBC--CCHHHHHHHHHHSCBCBTTTSCCCSSCC---CCCCCGGGCC-BCCSEEEECCTTCHHHHHHHHHHTCC
T ss_pred             cccCCCCCCC--CChhHHHHHHHHcCCCcHHHeeeecCCC---CCCCCcccce-EEeceEEEecCCCHHHHHHHHHhCCC
Confidence            74  679999  999 999999888999999999999887   8987654443 3677888775  79999999999999


Q ss_pred             EEEEEecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-Ccccccce
Q psy7460         508 LSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQI  585 (1026)
Q Consensus       508 v~v~i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~  585 (1026)
                      |+|+|++. .|++|++|||.  .+.|+...+||||+|||||+++|++|||||||||+.|||+|||||+|+. |.|||++.
T Consensus       246 V~v~i~a~~~f~~Y~~GVy~--~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~  323 (329)
T 3qt4_A          246 VAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATA  323 (329)
T ss_dssp             EEEEECCCGGGTTEEEEEEC--CSSCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTT
T ss_pred             EEEEEecChhhhhccCceee--cCCCCCCcCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCc
Confidence            99999996 79999999995  4568777899999999999999999999999999999999999999998 99999999


Q ss_pred             eeeeEE
Q psy7460         586 AGYATI  591 (1026)
Q Consensus       586 ~~~~~~  591 (1026)
                      ++||++
T Consensus       324 ~~yp~v  329 (329)
T 3qt4_A          324 ASYPAL  329 (329)
T ss_dssp             CEEEEC
T ss_pred             eeEeeC
Confidence            999984

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=1.2e-69  Score=609.79  Aligned_cols=287  Identities=28%  Similarity=0.514  Sum_probs=239.7

Q ss_pred             CChhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc--------CCCcccccccCCCCCHHHHh-hhcCCCCCccch
Q psy7460         283 FDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTY  353 (1026)
Q Consensus       283 ~~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~--------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~  353 (1026)
                      .+++.+.++|++|+++|+|+|.+.+|+.+|++||++|++        ..++++|+|+|+|||.|||+ ++++........
T Consensus        57 ~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~~~  136 (363)
T 3tnx_A           57 TSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTT  136 (363)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSCCSEEECSCTTTTSCHHHHHHHHSCSSCSCCCC
T ss_pred             cCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEeccccccCCHHHHHHHhcccccccccc
Confidence            356788999999999999999999999999999999963        45678899999999999998 777765432211


Q ss_pred             hhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhc
Q psy7460         354 ERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK  433 (1026)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~  433 (1026)
                      ...     ..  .........+||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+||||+.
T Consensus       137 ~~~-----~~--~~~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~  209 (363)
T 3tnx_A          137 TEL-----SY--EEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDR  209 (363)
T ss_dssp             SSS-----SS--SCCCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT
T ss_pred             ccc-----cc--ccccCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhcccC
Confidence            100     00  00001234579999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEE
Q psy7460         434 QCSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSV  510 (1026)
Q Consensus       434 ~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v  510 (1026)
                      .+.||+|  |.+ .||+|+.++||++|++|||.+.+.   .|...........+..+..+.  ++..|+.+|+ +|||+|
T Consensus       210 ~~~GC~G--G~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~-~gPvsv  283 (363)
T 3tnx_A          210 RSYGCNG--GYPWSALQLVAQYGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIA-NQPVSV  283 (363)
T ss_dssp             TSCTTBC--CCHHHHHHHHHHTCBCBTTTSCCCSSCC---CCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHT-TSCEEE
T ss_pred             CCCCCCC--CChHHHHhHHHhcCccccccCCCcCcCC---CcccCCCCCceeeccceEEcchhhHHHHHHHHH-cCCcEE
Confidence            8899999  999 999999999999999999999887   565443333333555665554  6777777765 699999


Q ss_pred             EEecC--ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----Ccccccc
Q psy7460         511 GLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQ  584 (1026)
Q Consensus       511 ~i~~~--~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~  584 (1026)
                      +|++.  .|++|++|||   ...|+. .+||||+|||||+    +|||||||||++|||+|||||+||.    |+|||++
T Consensus       284 ai~a~~~~F~~Y~sGVy---~~~~~~-~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~  355 (363)
T 3tnx_A          284 VLEAAGKDFQLYRGGIF---VGPCGN-KVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYT  355 (363)
T ss_dssp             EECCCSHHHHTEEEEEE---CCCCCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTS
T ss_pred             EEEecchhhhCCCCCEE---CCCCCC-CCCeEEEEEEcCC----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccc
Confidence            99974  6999999999   455764 6899999999986    5999999999999999999999997    4599999


Q ss_pred             eeeeeE
Q psy7460         585 IAGYAT  590 (1026)
Q Consensus       585 ~~~~~~  590 (1026)
                      .|+||+
T Consensus       356 ~a~yPi  361 (363)
T 3tnx_A          356 SSFYPV  361 (363)
T ss_dssp             CEEEEE
T ss_pred             eeeecc
Confidence            999997

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=5.1e-69  Score=602.76  Aligned_cols=296  Identities=31%  Similarity=0.610  Sum_probs=252.3

Q ss_pred             hhhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h-------CCCcccccCcCCCCCHHHHH-hhcCCCCCch
Q psy7460         651 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H-------KKHERYGTSEFSDRSPEEIL-CKTGFKWSER  717 (1026)
Q Consensus       651 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~-------~~~~~~giN~faD~t~eEf~-~~~g~~~~~~  717 (1026)
                      ++.+..+|++||++|+|.|.+.+|+.+|+.||++|+     +       ..++++|+|+|||||.|||+ .+++.+.+..
T Consensus        15 ~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~~~~~~~~   94 (331)
T 3qj3_A           15 STFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPAD   94 (331)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHSCCCCCSS
T ss_pred             CHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhcccccccc
Confidence            456678999999999999999899999999999996     1       24567899999999999999 5666654321


Q ss_pred             hhhhhhhhhhhhhhh-hhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCC--ceecCHHHH
Q psy7460         718 TYERIVADREKVEKM-LMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGK--LVEFSKSQL  794 (1026)
Q Consensus       718 ~~~~~~~~~~~~~~~-~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~--~~~lS~Q~l  794 (1026)
                      ...    ........ ........+||++||||++|+||||||||.||||||||++++||++++|++++  ++.||+|+|
T Consensus        95 ~~~----~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~L  170 (331)
T 3qj3_A           95 LHK----NGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQL  170 (331)
T ss_dssp             TTT----TCEEECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHH
T ss_pred             ccc----cCcccccccccccccccCCCcceecccCCccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence            100    00000000 00001234799999999999999999999999999999999999999999998  999999999


Q ss_pred             HhhcCCCCCCCCCCchHHHHHHHHc-CCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcC
Q psy7460         795 VECAKQCSGCDGCFFEPSIEYTHQA-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYG  871 (1026)
Q Consensus       795 vdC~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~G  871 (1026)
                      +||+..+.||+||.+..|++|+.++ ||++|++|||.+.++   .|....... .+++.+|..+.  ++++||++|+++|
T Consensus       171 vdC~~~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~e~~lk~al~~~G  246 (331)
T 3qj3_A          171 VDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQV-AARLSGYVYLSGPDENMLADMVATKG  246 (331)
T ss_dssp             HHHCTTSCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCTTSE-EECCSEEEEESSCCHHHHHHHHHHHC
T ss_pred             hhhccCCCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCC---CCCCCcccc-eeEeeEEEEeCCCCHHHHHHHHHhCC
Confidence            9999888999999999999999776 999999999999888   898765544 44788888765  7999999999999


Q ss_pred             CEEEEEeCC-CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCC
Q psy7460         872 PLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQ  949 (1026)
Q Consensus       872 PV~v~i~~~-~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~  949 (1026)
                      ||+|+|++. .|++|++|||..+  .|+...++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++
T Consensus       247 PV~v~i~a~~~f~~Y~~Gvy~~~--~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~  324 (331)
T 3qj3_A          247 PVAVAFDADDPFGSYSGGVYYNP--TCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAG  324 (331)
T ss_dssp             CEEEEECCCTTGGGEEEEEECCT--TCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTT
T ss_pred             CEEEEEEcccccccccCceEeCC--CCCCCcCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCC
Confidence            999999985 4999999999876  58767899999999999999999999999999999999999999998 9999999


Q ss_pred             cceEEEE
Q psy7460         950 IAGYATI  956 (1026)
Q Consensus       950 ~~~~~~~  956 (1026)
                      .++||++
T Consensus       325 ~~~~p~v  331 (331)
T 3qj3_A          325 VASVPTL  331 (331)
T ss_dssp             SCEEEEC
T ss_pred             ceeeeeC
Confidence            9999974

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=7.5e-69  Score=598.36  Aligned_cols=289  Identities=31%  Similarity=0.606  Sum_probs=246.7

Q ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHh-hhcCCCCCccch
Q psy7460         287 NILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTY  353 (1026)
Q Consensus       287 ~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~  353 (1026)
                      +++.+|++||++|+|.|.+.+|+.+|+.||++|++            ..++++|+|+|+|||.|||+ .++|.+......
T Consensus         6 ~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~~~   85 (314)
T 1by8_A            6 ILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHS   85 (314)
T ss_dssp             THHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSCCCCCCSCCC
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhccCCCCcccc
Confidence            46688999999999999999999999999999952            14678899999999999997 677765422110


Q ss_pred             hhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhc
Q psy7460         354 ERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK  433 (1026)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~  433 (1026)
                      ..     ..   ..........||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+|+||+.
T Consensus        86 ~~-----~~---~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~~  157 (314)
T 1by8_A           86 RS-----ND---TLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS  157 (314)
T ss_dssp             CS-----SS---SSBCCCCSSCCCSCCBSTTTTCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTCT
T ss_pred             cC-----Cc---cccccccccCCCCeEeCCCCCCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcC
Confidence            00     00   01110111239999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCc-hHHHHHH-hCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEE
Q psy7460         434 QCSGCGGCDGLE-QPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLS  509 (1026)
Q Consensus       434 ~~~gC~G~~G~~-~a~~~~~-~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~  509 (1026)
                      .+.||+|  |.+ .|++|+. ++||++|++|||.+.+.   .|....... ...+.+|..++  ++++||++|+++|||+
T Consensus       158 ~~~gC~G--G~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~~~~i~~al~~~GPV~  231 (314)
T 1by8_A          158 ENDGCGG--GYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGPVS  231 (314)
T ss_dssp             TSCGGGC--CCSHHHHHHHHHTTCBCBTTTSCCCSSCC---CCCCCGGGC-CBCCSCEEECCSSCHHHHHHHHHHHCCEE
T ss_pred             CCCCCcC--CCHHHHHHHHHHcCCcCcHhhCCCCCCCC---CcCCCCccc-eeEECcEEEecCCCHHHHHHHHHHcCCEE
Confidence            6789999  999 9999987 78999999999999887   898765433 33667887775  8999999999999999


Q ss_pred             EEEecC--ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-Cccccccee
Q psy7460         510 VGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIA  586 (1026)
Q Consensus       510 v~i~~~--~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~  586 (1026)
                      |+|++.  .|++|++|||.  .+.|+...++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.+
T Consensus       232 v~i~~~~~~f~~Y~~Gvy~--~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  309 (314)
T 1by8_A          232 VAIDASLTSFQFYSKGVYY--DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA  309 (314)
T ss_dssp             EEECCCSHHHHTEEEECBC--CTTCCSSCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSC
T ss_pred             EEEEeChHHhhhccCceec--CCCCCCCCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCee
Confidence            999996  69999999995  3458876789999999999999999999999999999999999999995 899999999


Q ss_pred             eeeEE
Q psy7460         587 GYATI  591 (1026)
Q Consensus       587 ~~~~~  591 (1026)
                      +||++
T Consensus       310 ~~p~~  314 (314)
T 1by8_A          310 SFPKM  314 (314)
T ss_dssp             EEECC
T ss_pred             EEeeC
Confidence            99973

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=1.4e-68  Score=597.39  Aligned_cols=292  Identities=28%  Similarity=0.586  Sum_probs=250.4

Q ss_pred             hhhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h-------CCCcccccCcCCCCCHHHHHhhcCCCCCchh
Q psy7460         651 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H-------KKHERYGTSEFSDRSPEEILCKTGFKWSERT  718 (1026)
Q Consensus       651 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~-------~~~~~~giN~faD~t~eEf~~~~g~~~~~~~  718 (1026)
                      +..+..+|++||++|+|.|.+.+|+.+|+.||++|+     +       +.+++||+|+|||||.|||+.++|.+.....
T Consensus        20 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~g~~~~~~~   99 (329)
T 3qt4_A           20 KSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQKP   99 (329)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHHHHHHTCCC--
T ss_pred             HHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHHhcCCcccccc
Confidence            456678899999999999999889999999999996     1       2456789999999999999977665432111


Q ss_pred             hhhhhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhc
Q psy7460         719 YERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA  798 (1026)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~  798 (1026)
                      ..    ..  .....+... ..+||++||||++ +||||||||.||||||||++++||++++|++++++.||+|+|+||+
T Consensus       100 ~~----~~--~~~~~~~~~-~~~lP~~~DwR~~-~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC~  171 (329)
T 3qt4_A          100 KH----PE--NLRMPYVSS-KKPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCS  171 (329)
T ss_dssp             ----------CCEEECCCC-CSCCCSCEECTTT-SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHC
T ss_pred             cc----cc--cccccccCC-ccCCCCCEEcccc-ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHhc
Confidence            00    00  000111111 2479999999999 9999999999999999999999999999999999999999999998


Q ss_pred             C--CCCCCCCCCchHHHHHHHHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEE
Q psy7460         799 K--QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLS  874 (1026)
Q Consensus       799 ~--~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~  874 (1026)
                      .  .+.||+||.+..|++|+.++||++|++|||.+.++   .|........ +++.+|..++  ++++||++|+++|||+
T Consensus       172 ~~~g~~GC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~v~~~~e~~lk~al~~~GPV~  247 (329)
T 3qt4_A          172 SSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYEAQGD---YCRFDSSQSV-TTLSGYYDLPSGDENSLADAVGQAGPVA  247 (329)
T ss_dssp             GGGTCCTTBCCCHHHHHHHHHHSCBCBTTTSCCCSSCC---CCCCCGGGCC-BCCSEEEECCTTCHHHHHHHHHHTCCEE
T ss_pred             cccCCCCCCCCChhHHHHHHHHcCCCcHHHeeeecCCC---CCCCCcccce-EEeceEEEecCCCHHHHHHHHHhCCCEE
Confidence            6  37899999999999999888999999999999887   8987654433 4778888775  6999999999999999


Q ss_pred             EEEeCC-CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcce
Q psy7460         875 VLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAG  952 (1026)
Q Consensus       875 v~i~~~-~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~  952 (1026)
                      |+|++. .|++|++|||..+  .|+...++|||+|||||+++|++|||||||||+.|||+|||||+|+. |.|||++.++
T Consensus       248 v~i~a~~~f~~Y~~GVy~~~--~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~  325 (329)
T 3qt4_A          248 VAIDATDELQFYSGGLFYDQ--TCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAAS  325 (329)
T ss_dssp             EEECCCGGGTTEEEEEECCS--SCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTCE
T ss_pred             EEEecChhhhhccCceeecC--CCCCCcCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCcee
Confidence            999996 7999999999876  58767799999999999999999999999999999999999999998 9999999999


Q ss_pred             EEEE
Q psy7460         953 YATI  956 (1026)
Q Consensus       953 ~~~~  956 (1026)
                      ||++
T Consensus       326 yp~v  329 (329)
T 3qt4_A          326 YPAL  329 (329)
T ss_dssp             EEEC
T ss_pred             EeeC
Confidence            9974

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=2.3e-68  Score=594.69  Aligned_cols=287  Identities=29%  Similarity=0.600  Sum_probs=245.1

Q ss_pred             hHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHh-hhcCCCCCccc
Q psy7460         286 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERT  352 (1026)
Q Consensus       286 ~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~  352 (1026)
                      +.+..+|++||++|+|.|.+.+|+.+|+.||++|++            ..++++|+|+|+|||.|||+ .++|.+.....
T Consensus         6 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~g~~~~~~~   85 (315)
T 2c0y_A            6 PTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQW   85 (315)
T ss_dssp             GGGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTTSBCCCCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhcCCCCCccc
Confidence            356789999999999999988899999999999952            14678899999999999997 67776542211


Q ss_pred             hhhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhh
Q psy7460         353 YERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA  432 (1026)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~  432 (1026)
                      ..    ..     .... ....+||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+|+||+
T Consensus        86 ~~----~~-----~~~~-~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvdC~  155 (315)
T 2c0y_A           86 QR----NI-----TYKS-NPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS  155 (315)
T ss_dssp             GS----CB-----CC-------CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHS
T ss_pred             cC----Cc-----cccC-cccCCCCCeEecCCCCCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHhhc
Confidence            00    00     0000 11246999999999999999999999999999999999999999999999999999999998


Q ss_pred             -c--CCCCCCCCCCCc-hHHHHHH-hCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcC
Q psy7460         433 -K--QCSGCGGCDGLE-QPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKY  505 (1026)
Q Consensus       433 -~--~~~gC~G~~G~~-~a~~~~~-~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~  505 (1026)
                       .  .+.||+|  |.+ .|++|+. ++||++|++|||.+.++   .|....... ...+.+|..++  ++++||++|+++
T Consensus       156 ~~~~~~~gC~G--G~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~~~~i~~al~~~  229 (315)
T 2c0y_A          156 TEKYGNKGCNG--GFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYR-AATCSKYTELPYGREDVLKEAVANK  229 (315)
T ss_dssp             CGGGTCCGGGC--BCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGGE-EECCCEEEECCTTCHHHHHHHHHHT
T ss_pred             ccccCCCCCCC--CCHHHHHHHHHHhCCcCchhcCCCccCCC---CcccCCccc-ccccCCeEEeCCCCHHHHHHHHHHc
Confidence             4  3789999  999 9999987 68999999999999887   898765433 34678887775  899999999999


Q ss_pred             CCEEEEEecC--ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-Ccccc
Q psy7460         506 GPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI  582 (1026)
Q Consensus       506 gPv~v~i~~~--~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi  582 (1026)
                      |||+|+|++.  .|++|++|||.  .+.|++ .++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||
T Consensus       230 GPV~v~i~~~~~~f~~Y~~Gvy~--~~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI  306 (315)
T 2c0y_A          230 GPVSVGVDARHPSFFLYRSGVYY--EPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI  306 (315)
T ss_dssp             CCEEEEECCCSHHHHTEEEEEEC--CTTCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGT
T ss_pred             CCEEEEEecCchhhhccCCCccc--CCCCCC-cCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCc
Confidence            9999999996  69999999995  345876 789999999999999999999999999999999999999995 89999


Q ss_pred             cceeeeeEE
Q psy7460         583 EQIAGYATI  591 (1026)
Q Consensus       583 ~~~~~~~~~  591 (1026)
                      ++.++||++
T Consensus       307 ~~~~~~p~~  315 (315)
T 2c0y_A          307 ASFPSYPEI  315 (315)
T ss_dssp             TTSCEEEEC
T ss_pred             CceeEEeeC
Confidence            999999973

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=2.3e-68  Score=594.88  Aligned_cols=285  Identities=32%  Similarity=0.618  Sum_probs=245.3

Q ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHh-hhcCCCCCccch
Q psy7460         287 NILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTY  353 (1026)
Q Consensus       287 ~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~  353 (1026)
                      .++.+|++||++|+|.| +.+|+.+|+.||++|++            ..++++|+|+|+|||.|||+ .++|.+..... 
T Consensus         7 ~~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~-   84 (316)
T 1cs8_A            7 SLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-   84 (316)
T ss_dssp             GGHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCS-
T ss_pred             HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhcCCCCCccc-
Confidence            46788999999999999 88899999999999952            24578899999999999998 67776532111 


Q ss_pred             hhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhc
Q psy7460         354 ERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK  433 (1026)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~  433 (1026)
                      .    . .    .+.. ....+||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+|+||+.
T Consensus        85 ~----~-~----~~~~-~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~  154 (316)
T 1cs8_A           85 K----G-K----VFQE-PLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSG  154 (316)
T ss_dssp             C----C-E----ECCC-CTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCG
T ss_pred             c----C-c----cccC-ccccCCCCcEecCCCCCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhcc
Confidence            0    0 0    0111 123469999999999999999999999999999999999999999999999999999999986


Q ss_pred             C--CCCCCCCCCCc-hHHHHHH-hCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCE
Q psy7460         434 Q--CSGCGGCDGLE-QPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPL  508 (1026)
Q Consensus       434 ~--~~gC~G~~G~~-~a~~~~~-~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv  508 (1026)
                      .  +.||+|  |.+ .|++|+. ++||++|++|||.+.++   .|....... .+.+.+|..++ ++++||++|+++|||
T Consensus       155 ~~g~~gC~G--G~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~~~ik~~l~~~GPV  228 (316)
T 1cs8_A          155 PQGNEGCNG--GLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYS-VANDAGFVDIPKQEKALMKAVATVGPI  228 (316)
T ss_dssp             GGTCCGGGC--BCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGGE-EECCCCEEECCSCHHHHHHHHHHHCCE
T ss_pred             ccCCCCCCC--CCHHHHHHHHHHhCCcCchhccCCCCCCC---CcCCCCccc-eeEeccEEEeCCCHHHHHHHHHhcCCE
Confidence            3  689999  999 9999985 89999999999999887   898765433 44677887776 899999999999999


Q ss_pred             EEEEecC--ccccccCCceeCCCCCCCCCCCCeEEEEEEee---ec-CCccEEEEEcCCCCCCCCCcEEEEEecC-Cccc
Q psy7460         509 SVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---KQ-DDIPYWLARNSWGPIGPDEGFFKIERGN-NACG  581 (1026)
Q Consensus       509 ~v~i~~~--~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG---~~-~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cg  581 (1026)
                      +|+|++.  .|++|++|||.  .+.|+...+||||+|||||   ++ +|++|||||||||+.|||+|||||+|+. |.||
T Consensus       229 ~v~i~~~~~~f~~Y~~Gvy~--~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cg  306 (316)
T 1cs8_A          229 SVAIDAGHESFLFYKEGIYF--EPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG  306 (316)
T ss_dssp             EEEECCCSHHHHTEEEEEEC--CTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGG
T ss_pred             EEEEecCChhhccccCceEC--CCCCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccC
Confidence            9999995  69999999995  3458876789999999999   77 8999999999999999999999999997 8999


Q ss_pred             ccceeeeeEE
Q psy7460         582 IEQIAGYATI  591 (1026)
Q Consensus       582 i~~~~~~~~~  591 (1026)
                      |++.++||++
T Consensus       307 I~~~~~~p~~  316 (316)
T 1cs8_A          307 IASAASYPTV  316 (316)
T ss_dssp             TTTSCEEECC
T ss_pred             ccceeeEeeC
Confidence            9999999973

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=2.8e-68  Score=595.16  Aligned_cols=289  Identities=30%  Similarity=0.571  Sum_probs=246.7

Q ss_pred             hhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc--------CCCcccccccCCCCCHHHHh-hhcCCCCCccchhh
Q psy7460         285 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYER  355 (1026)
Q Consensus       285 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~--------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~~~  355 (1026)
                      ++++..+|++||++|+|.|.+.+|+.+|+.||++|++        ..++++|+|+|+|||.|||+ .++|.+........
T Consensus        15 e~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~~~~~   94 (322)
T 1pci_A           15 TERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQS   94 (322)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSCTTTTSCHHHHHHHHCCCBCCCSSCCC
T ss_pred             hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEecCccccCCHHHHHHHhcCCCCccccccc
Confidence            4567789999999999999999999999999999953        34678899999999999998 66676432111000


Q ss_pred             hhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCC
Q psy7460         356 IVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC  435 (1026)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~  435 (1026)
                         ...    .. ......+||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+|+||+..+
T Consensus        95 ---~~~----~~-~~~~~~~lP~~~DwR~~g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~~~  166 (322)
T 1pci_A           95 ---YDE----EF-INEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS  166 (322)
T ss_dssp             ---CSE----EC-CCCCCCCSCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCTTS
T ss_pred             ---ccc----cc-ccccccCCCCeEecccCCCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcCCC
Confidence               000    00 0012347999999999999999999999999999999999999999999999999999999998767


Q ss_pred             CCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEE
Q psy7460         436 SGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGL  512 (1026)
Q Consensus       436 ~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i  512 (1026)
                      .||+|  |.+ .||+|+.+.||++|++|||.+.+.   .|.........+.+.+|..++  ++++||++|++ |||+|+|
T Consensus       167 ~gC~G--G~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l~~-GPV~v~i  240 (322)
T 1pci_A          167 HGCKG--GYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVV  240 (322)
T ss_dssp             CGGGC--BCHHHHHHHHHHHCBCBTTTSCCCSSCC---CCTTTTCCSCCBCCCCEEECCSSBHHHHHHHHHH-SCEEEEE
T ss_pred             CCCCC--CCHHHHHHHHHHhCCCchhhCCCCCCCC---CCCCCCCCCceEEEeeEEEeCCCcHHHHHHHHHH-CCEEEEE
Confidence            89999  999 999999999999999999999887   898764333334677887775  78899999986 9999999


Q ss_pred             ecC--ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----Cccccccee
Q psy7460         513 NSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIA  586 (1026)
Q Consensus       513 ~~~--~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~  586 (1026)
                      ++.  .|++|++|||.   ..|+. .+||||+|||||+++|++|||||||||+.|||+|||||+|+.    |.|||++.+
T Consensus       241 ~~~~~~f~~Y~~Gvy~---~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~  316 (322)
T 1pci_A          241 ESKGRPFQLYKGGIFE---GPCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS  316 (322)
T ss_dssp             CTTCHHHHTEEEEEEC---CSCCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCC
T ss_pred             ecccccccccCCeEeC---CCCCC-CCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccce
Confidence            995  69999999994   46876 579999999999999999999999999999999999999996    899999999


Q ss_pred             eeeEE
Q psy7460         587 GYATI  591 (1026)
Q Consensus       587 ~~~~~  591 (1026)
                      +||++
T Consensus       317 ~yp~~  321 (322)
T 1pci_A          317 YYPTK  321 (322)
T ss_dssp             EEECC
T ss_pred             eEEEe
Confidence            99975

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=5.3e-68  Score=590.47  Aligned_cols=283  Identities=30%  Similarity=0.593  Sum_probs=242.2

Q ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHh-hhcC-CCCCccchhh
Q psy7460         290 ETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEIL-CKTG-FKWSERTYER  355 (1026)
Q Consensus       290 ~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~-~~~~-~~~~~~~~~~  355 (1026)
                      .+|++||++|+|+|.+.+|+.+| .||++|++            ..++++|+|+|+|||.|||+ .++| .+........
T Consensus         3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~~   81 (310)
T 2o6x_A            3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSH   81 (310)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHCCCCCCGGGGSCS
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhcCCCCCccccccc
Confidence            57999999999999988899999 99999952            24578899999999999998 6777 5432110000


Q ss_pred             hhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC-
Q psy7460         356 IVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-  434 (1026)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~-  434 (1026)
                         . .    .+.. . ..+||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+|+||+.. 
T Consensus        82 ---~-~----~~~~-~-~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~~~  151 (310)
T 2o6x_A           82 ---G-V----PYEA-N-NRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW  151 (310)
T ss_dssp             ---S-E----ECCC------CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCGGG
T ss_pred             ---C-C----cccc-c-cCCCCCeEecCcCCCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhhcc
Confidence               0 0    0010 1 12699999999999999999999999999999999999999999999999999999999863 


Q ss_pred             -CCCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEE
Q psy7460         435 -CSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSV  510 (1026)
Q Consensus       435 -~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v  510 (1026)
                       +.||+|  |.+ .|++|+.++||++|++|||.+.+.   .|..+..... +.+.+|..++  ++++||++|+++|||+|
T Consensus       152 ~~~gC~G--G~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~v~~~~~~~i~~~l~~~GPV~v  225 (310)
T 2o6x_A          152 GNNGCGG--GLMENAYQYLKQFGLETESSYPYTAVEG---QCRYNKQLGV-AKVTGFYTVHSGSEVELKNLVGAEGPAAV  225 (310)
T ss_dssp             TCCGGGC--CCHHHHHHHHTTSCBCBTTTSCCCSSCC---CCCCCGGGCC-EEEEEEEEECSCCHHHHHHHHHHHCCEEE
T ss_pred             CCCCCCC--CCHHHHHHHHHHCCcCchhcCCCCCCCC---CccCCCCCCc-eEeCeEEEeCCCCHHHHHHHHHhcCCeEE
Confidence             789999  999 999999999999999999999887   8987644333 3567777664  89999999999999999


Q ss_pred             EEecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-Ccccccceeee
Q psy7460         511 GLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGY  588 (1026)
Q Consensus       511 ~i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~~~  588 (1026)
                      +|++. .|++|++|||.  ...|+...++|||+|||||+++|++|||||||||+.|||+|||||+|+. |.|||++.++|
T Consensus       226 ~i~~~~~f~~Y~~Gvy~--~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~  303 (310)
T 2o6x_A          226 AVDVESDFMMYRSGIYQ--SQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASL  303 (310)
T ss_dssp             EECCCHHHHTEEEEEEC--CSSCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEE
T ss_pred             EEecchhhhhCCCceec--CCCCCCCCCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeE
Confidence            99996 79999999995  3568866789999999999999999999999999999999999999997 89999999999


Q ss_pred             eEE
Q psy7460         589 ATI  591 (1026)
Q Consensus       589 ~~~  591 (1026)
                      |++
T Consensus       304 p~~  306 (310)
T 2o6x_A          304 PMV  306 (310)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            986

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=9.9e-68  Score=589.32  Aligned_cols=288  Identities=29%  Similarity=0.584  Sum_probs=247.6

Q ss_pred             hHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----hC-------CCcccccCcCCCCCHHHHH-hhcCCCCCchhh
Q psy7460         653 NILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----HK-------KHERYGTSEFSDRSPEEIL-CKTGFKWSERTY  719 (1026)
Q Consensus       653 ~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~~-------~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~  719 (1026)
                      .+..+|++||++|+|.|.+.+|+.+|+.||++|+     ++       .++++|+|+|+|||.+||+ .++|.+......
T Consensus         6 ~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~~~   85 (314)
T 1by8_A            6 ILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHS   85 (314)
T ss_dssp             THHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSCCCCCCSCCC
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhccCCCCcccc
Confidence            4567899999999999999899999999999996     11       4578899999999999997 666655422110


Q ss_pred             hhhhhhhhhhhhhhhcccCC-CCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhc
Q psy7460         720 ERIVADREKVEKMLMEVEKD-GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA  798 (1026)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~-~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~  798 (1026)
                      .     .    ...+..... ..||++||||++|+|+||||||.||||||||++++||++++|++|+++.||+|+|+||+
T Consensus        86 ~-----~----~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~  156 (314)
T 1by8_A           86 R-----S----NDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV  156 (314)
T ss_dssp             C-----S----SSSSBCCCCSSCCCSCCBSTTTTCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTC
T ss_pred             c-----C----CccccccccccCCCCeEeCCCCCCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhc
Confidence            0     0    001111112 23999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHHHH-HcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEE
Q psy7460         799 KQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSV  875 (1026)
Q Consensus       799 ~~~~gC~GG~~~~a~~y~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v  875 (1026)
                      ..+.||+||.+..|++|+. +.||++|++|||.+.++   .|...+... .+++.+|..++  ++++||++|+++|||+|
T Consensus       157 ~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~~~~i~~al~~~GPV~v  232 (314)
T 1by8_A          157 SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGPVSV  232 (314)
T ss_dssp             TTSCGGGCCCSHHHHHHHHHTTCBCBTTTSCCCSSCC---CCCCCGGGC-CBCCSCEEECCSSCHHHHHHHHHHHCCEEE
T ss_pred             CCCCCCcCCCHHHHHHHHHHcCCcCcHhhCCCCCCCC---CcCCCCccc-eeEECcEEEecCCCHHHHHHHHHHcCCEEE
Confidence            7788999999999999997 68999999999999887   898664433 34777887765  79999999999999999


Q ss_pred             EEeCC--CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcce
Q psy7460         876 LLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAG  952 (1026)
Q Consensus       876 ~i~~~--~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~  952 (1026)
                      +|++.  .|++|++|||..+  .|+...++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.++
T Consensus       233 ~i~~~~~~f~~Y~~Gvy~~~--~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~  310 (314)
T 1by8_A          233 AIDASLTSFQFYSKGVYYDE--SCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS  310 (314)
T ss_dssp             EECCCSHHHHTEEEECBCCT--TCCSSCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCE
T ss_pred             EEEeChHHhhhccCceecCC--CCCCCCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeE
Confidence            99996  6999999999875  58766789999999999999999999999999999999999999995 8999999999


Q ss_pred             EEE
Q psy7460         953 YAT  955 (1026)
Q Consensus       953 ~~~  955 (1026)
                      ||+
T Consensus       311 ~p~  313 (314)
T 1by8_A          311 FPK  313 (314)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            996

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=1.5e-67  Score=592.86  Aligned_cols=287  Identities=28%  Similarity=0.504  Sum_probs=239.1

Q ss_pred             hhhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h---CCCcccccCcCCCCCHHHHH-hhcCCCCCchhhhh
Q psy7460         651 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H---KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYER  721 (1026)
Q Consensus       651 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~---~~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~~~  721 (1026)
                      ++.+.++|++||++|+|.|.+.+|+.+|+.||++|+     +   +.+++||+|+|||||.|||+ ++++..........
T Consensus        59 ~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~~~~~  138 (363)
T 3tnx_A           59 TERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTE  138 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSCCSEEECSCTTTTSCHHHHHHHHSCSSCSCCCCSS
T ss_pred             HHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEeccccccCCHHHHHHHhcccccccccccc
Confidence            567889999999999999999999999999999996     1   24568899999999999999 66665433211110


Q ss_pred             hhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCC
Q psy7460         722 IVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC  801 (1026)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~  801 (1026)
                           .  ...........+||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+||||+..+
T Consensus       139 -----~--~~~~~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~~~  211 (363)
T 3tnx_A          139 -----L--SYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRS  211 (363)
T ss_dssp             -----S--SSSCCCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTS
T ss_pred             -----c--ccccccCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhcccCCC
Confidence                 0  001111223458999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCchHHHHHHHHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeec--ChHHHHHHHHHhcCCEEEEEeC
Q psy7460         802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNS  879 (1026)
Q Consensus       802 ~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~ik~~l~~~GPV~v~i~~  879 (1026)
                      .||+||.+..|++|+.++||++|++|||.+.+.   .|..........++..+..+  .++..|+.+|+ +|||+|+|++
T Consensus       212 ~GC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~-~gPvsvai~a  287 (363)
T 3tnx_A          212 YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIA-NQPVSVVLEA  287 (363)
T ss_dssp             CTTBCCCHHHHHHHHHHTCBCBTTTSCCCSSCC---CCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHT-TSCEEEEECC
T ss_pred             CCCCCCChHHHHhHHHhcCccccccCCCcCcCC---CcccCCCCCceeeccceEEcchhhHHHHHHHHH-cCCcEEEEEe
Confidence            999999999999999999999999999999887   56544333333345555544  35777777775 6999999997


Q ss_pred             C--CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceE
Q psy7460         880 D--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGY  953 (1026)
Q Consensus       880 ~--~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~  953 (1026)
                      .  .|++|++|||..+   |+. .+||||+|||||+    +|||||||||++|||+|||||+||.    |.|||++.++|
T Consensus       288 ~~~~F~~Y~sGVy~~~---~~~-~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~y  359 (363)
T 3tnx_A          288 AGKDFQLYRGGIFVGP---CGN-KVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY  359 (363)
T ss_dssp             CSHHHHTEEEEEECCC---CCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEE
T ss_pred             cchhhhCCCCCEECCC---CCC-CCCeEEEEEEcCC----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeee
Confidence            4  5999999999875   654 5899999999986    4999999999999999999999986    45999999999


Q ss_pred             EEE
Q psy7460         954 ATI  956 (1026)
Q Consensus       954 ~~~  956 (1026)
                      |+.
T Consensus       360 Pik  362 (363)
T 3tnx_A          360 PVK  362 (363)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            974

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=2.2e-67  Score=586.80  Aligned_cols=288  Identities=29%  Similarity=0.608  Sum_probs=246.5

Q ss_pred             hhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----hC-------CCcccccCcCCCCCHHHHH-hhcCCCCCchh
Q psy7460         652 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----HK-------KHERYGTSEFSDRSPEEIL-CKTGFKWSERT  718 (1026)
Q Consensus       652 ~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~~-------~~~~~giN~faD~t~eEf~-~~~g~~~~~~~  718 (1026)
                      +.+..+|++||++|+|.|.+.+|+.+|+.||++|+     ++       .++++|+|+|+|||.+||+ .++|.+.....
T Consensus         6 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~g~~~~~~~   85 (315)
T 2c0y_A            6 PTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQW   85 (315)
T ss_dssp             GGGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTTSBCCCCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhcCCCCCccc
Confidence            35667899999999999998889999999999996     11       4578899999999999997 66665542211


Q ss_pred             hhhhhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhc
Q psy7460         719 YERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA  798 (1026)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~  798 (1026)
                      ..          ...+......+||++||||++|+|+||||||.||||||||++++||++++|++|+++.||+|+|+||+
T Consensus        86 ~~----------~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvdC~  155 (315)
T 2c0y_A           86 QR----------NITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS  155 (315)
T ss_dssp             GS----------CBCC------CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHS
T ss_pred             cC----------CccccCcccCCCCCeEecCCCCCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHhhc
Confidence            00          00111112346999999999999999999999999999999999999999999999999999999998


Q ss_pred             -C--CCCCCCCCCchHHHHHHH-HcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCC
Q psy7460         799 -K--QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGP  872 (1026)
Q Consensus       799 -~--~~~gC~GG~~~~a~~y~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GP  872 (1026)
                       .  .+.||+||.+..|++|+. +.||++|++|||.+.++   .|...+.. ..+++.+|..++  ++++||++|+++||
T Consensus       156 ~~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~-~~~~i~~~~~v~~~~~~~i~~al~~~GP  231 (315)
T 2c0y_A          156 TEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKY-RAATCSKYTELPYGREDVLKEAVANKGP  231 (315)
T ss_dssp             CGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGG-EEECCCEEEECCTTCHHHHHHHHHHTCC
T ss_pred             ccccCCCCCCCCCHHHHHHHHHHhCCcCchhcCCCccCCC---CcccCCcc-cccccCCeEEeCCCCHHHHHHHHHHcCC
Confidence             4  478999999999999997 58999999999999887   89876543 345788888775  79999999999999


Q ss_pred             EEEEEeCC--CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCC
Q psy7460         873 LSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQ  949 (1026)
Q Consensus       873 V~v~i~~~--~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~  949 (1026)
                      |+|+|++.  .|++|++|||..+  .|+. .++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++
T Consensus       232 V~v~i~~~~~~f~~Y~~Gvy~~~--~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~  308 (315)
T 2c0y_A          232 VSVGVDARHPSFFLYRSGVYYEP--SCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS  308 (315)
T ss_dssp             EEEEECCCSHHHHTEEEEEECCT--TCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTT
T ss_pred             EEEEEecCchhhhccCCCcccCC--CCCC-cCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCcCc
Confidence            99999996  5999999999875  5776 789999999999999999999999999999999999999995 8999999


Q ss_pred             cceEEEE
Q psy7460         950 IAGYATI  956 (1026)
Q Consensus       950 ~~~~~~~  956 (1026)
                      .++||++
T Consensus       309 ~~~~p~~  315 (315)
T 2c0y_A          309 FPSYPEI  315 (315)
T ss_dssp             SCEEEEC
T ss_pred             eeEEeeC
Confidence            9999973

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=3.4e-67  Score=585.54  Aligned_cols=285  Identities=31%  Similarity=0.606  Sum_probs=246.4

Q ss_pred             hHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h-------CCCcccccCcCCCCCHHHHH-hhcCCCCCchhh
Q psy7460         653 NILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H-------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTY  719 (1026)
Q Consensus       653 ~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~-------~~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~  719 (1026)
                      .+..+|++||++|+|.| +.+|+.+|+.||++|+     +       +.++++|+|+|+|||.+||+ .++|.+..... 
T Consensus         7 ~~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~-   84 (316)
T 1cs8_A            7 SLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-   84 (316)
T ss_dssp             GGHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCS-
T ss_pred             HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhcCCCCCccc-
Confidence            46678999999999999 7789999999999996     1       24567899999999999998 66665432110 


Q ss_pred             hhhhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC
Q psy7460         720 ERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK  799 (1026)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~  799 (1026)
                      .          ...+......+||++||||++|+|+||||||.||||||||++++||++++|++|+++.||+|+|+||+.
T Consensus        85 ~----------~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~  154 (316)
T 1cs8_A           85 K----------GKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSG  154 (316)
T ss_dssp             C----------CEECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCG
T ss_pred             c----------CccccCccccCCCCcEecCCCCCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhcc
Confidence            0          001111223479999999999999999999999999999999999999999999999999999999985


Q ss_pred             --CCCCCCCCCchHHHHHHH-HcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEE
Q psy7460         800 --QCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSV  875 (1026)
Q Consensus       800 --~~~gC~GG~~~~a~~y~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v  875 (1026)
                        .+.||+||.+..|++|+. +.||++|++|||.+.++   .|...+.. ..+++.+|..++ ++++||++|+++|||+|
T Consensus       155 ~~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~-~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v  230 (316)
T 1cs8_A          155 PQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKY-SVANDAGFVDIPKQEKALMKAVATVGPISV  230 (316)
T ss_dssp             GGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGG-EEECCCCEEECCSCHHHHHHHHHHHCCEEE
T ss_pred             ccCCCCCCCCCHHHHHHHHHHhCCcCchhccCCCCCCC---CcCCCCcc-ceeEeccEEEeCCCHHHHHHHHHhcCCEEE
Confidence              378999999999999995 78999999999999887   89876543 345788888776 79999999999999999


Q ss_pred             EEeCC--CCcccCCcceeCCCCCCCCCCCCeEEEEEEee---ec-CCccEEEEEcCCCCCCCCCcEEEEEecC-CccccC
Q psy7460         876 LLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG---KQ-DNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIE  948 (1026)
Q Consensus       876 ~i~~~--~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg---~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~  948 (1026)
                      +|++.  .|++|++|||..+  .|+...++|||+|||||   ++ +|++|||||||||++|||+|||||+|+. |.|||+
T Consensus       231 ~i~~~~~~f~~Y~~Gvy~~~--~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~  308 (316)
T 1cs8_A          231 AIDAGHESFLFYKEGIYFEP--DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIA  308 (316)
T ss_dssp             EECCCSHHHHTEEEEEECCT--TCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTT
T ss_pred             EEecCChhhccccCceECCC--CCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCcc
Confidence            99995  5999999999875  58766799999999999   77 7999999999999999999999999997 899999


Q ss_pred             CcceEEE
Q psy7460         949 QIAGYAT  955 (1026)
Q Consensus       949 ~~~~~~~  955 (1026)
                      +.++||+
T Consensus       309 ~~~~~p~  315 (316)
T 1cs8_A          309 SAASYPT  315 (316)
T ss_dssp             TSCEEEC
T ss_pred             ceeeEee
Confidence            9999996

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=2.1e-67  Score=584.33  Aligned_cols=282  Identities=23%  Similarity=0.367  Sum_probs=239.8

Q ss_pred             HHHHHHHHhCCCCCChHHHHHHHHHHHhccc---CCCcccccccCCCCCHHHHhh-hcCCCCCccchhhhhhhhHHHHHh
Q psy7460         291 TFKAFIVKRGRQYANDEEIKERFEYFKQDGH---KKHERYGTSEFSDRSPEEILC-KTGFKWSERTYERIVADREKVEKM  366 (1026)
Q Consensus       291 ~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~---~~~~~~g~n~fsD~t~eEf~~-~~~~~~~~~~~~~~~~~~~~~~~~  366 (1026)
                      +|++||++|+|.|.+.+|+.+|+.||++|++   + +.. |+|+|+|||.|||+. +++.+...   ...   ....  .
T Consensus         7 ~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~~-g~N~F~Dlt~eEf~~~~~~~~~~~---~~~---~~~~--~   76 (312)
T 1xkg_A            7 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NGG-AINHLSDLSLDEFKNRFLMSAEAF---EHL---KTQF--D   76 (312)
T ss_dssp             SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HCC-CCCTTTTSCHHHHHHHHSBCHHHH---HHH---HHHH--C
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-ccC-CCCcccCCCHHHHHHHhcCCCCcc---ccc---cCCc--c
Confidence            5999999999999999999999999999964   3 333 999999999999984 77742110   000   0000  0


Q ss_pred             hhcc----cCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCC
Q psy7460         367 LMEV----EKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCD  442 (1026)
Q Consensus       367 ~~~~----~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~  442 (1026)
                      +...    ....+||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+|+||+. ..||+|  
T Consensus        77 ~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~-~~GC~G--  153 (312)
T 1xkg_A           77 LNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS-QHGCHG--  153 (312)
T ss_dssp             -----CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC-SSTTBC--
T ss_pred             cccccccccccccCCCccccccCCCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhccC-CCCCCC--
Confidence            1100    012379999999999999999999999999999999999999999999999999999999982 289999  


Q ss_pred             CCc-hHHHHHHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHc-CCCEEEEEecC---
Q psy7460         443 GLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYK-YGPLSVGLNSH---  515 (1026)
Q Consensus       443 G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~-~gPv~v~i~~~---  515 (1026)
                      |.+ .||+|+.+.||++|++|||.+.++   .|. +.... .+.+.+|..++  ++++||++|++ +|||+|+|++.   
T Consensus       154 G~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~-~~~~~-~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~  228 (312)
T 1xkg_A          154 DTIPRGIEYIQHNGVVQESYYRYVAREQ---SCR-RPNAQ-RFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD  228 (312)
T ss_dssp             CCHHHHHHHHHHHCEEBGGGSCCCSSCC---CCC-CCSSC-EECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHH
T ss_pred             CCHHHHHHHHHHcCCCccccCCccCCCC---CCC-CCCCc-eEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccc
Confidence            999 999999889999999999999887   888 43333 45778887775  89999999999 99999999995   


Q ss_pred             ccccccCCceeCCCCCCC-CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEeh
Q psy7460         516 LIHFYNGTPIRKNDETCS-PYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDV  593 (1026)
Q Consensus       516 ~~~~y~~Gi~~~~~~~c~-~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~~  593 (1026)
                      .|++|++|||.  ...|+ ... +|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.++||+++.
T Consensus       229 ~f~~Y~~GVy~--~~~c~~~~~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~~~  304 (312)
T 1xkg_A          229 AFRHYDGRTII--QRDNGYQPN-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILGQ  304 (312)
T ss_dssp             HHHTCCSSSCB--CCCCSSCCE-EEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECTT
T ss_pred             cccccCCcEEc--CCCCCCCcC-ceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeeccC
Confidence            79999999995  34687 556 99999999999999999999999999999999999999999999999999999853

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=5.7e-67  Score=584.58  Aligned_cols=290  Identities=30%  Similarity=0.561  Sum_probs=247.0

Q ss_pred             hhhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h---CCCcccccCcCCCCCHHHHH-hhcCCCCCchhhhh
Q psy7460         651 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H---KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYER  721 (1026)
Q Consensus       651 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~---~~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~~~  721 (1026)
                      ++.+..+|++||++|+|.|.+.+|+.+|+.||++|+     +   +.++++|+|+|+|||.+||+ .++|.+....... 
T Consensus        15 e~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~~~~-   93 (322)
T 1pci_A           15 TERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQ-   93 (322)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSCTTTTSCHHHHHHHHCCCBCCCSSCC-
T ss_pred             hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEecCccccCCHHHHHHHhcCCCCcccccc-
Confidence            345667899999999999999899999999999996     1   24578899999999999998 5566543211000 


Q ss_pred             hhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCC
Q psy7460         722 IVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC  801 (1026)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~  801 (1026)
                         ..    ...+......+||++||||++|+|+||||||.||||||||++++||++++|++|+++.||+|+|+||+..+
T Consensus        94 ---~~----~~~~~~~~~~~lP~~~DwR~~g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~~~  166 (322)
T 1pci_A           94 ---SY----DEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS  166 (322)
T ss_dssp             ---CC----SEECCCCCCCCSCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCTTS
T ss_pred             ---cc----ccccccccccCCCCeEecccCCCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcCCC
Confidence               00    00111122347999999999999999999999999999999999999999999999999999999999778


Q ss_pred             CCCCCCCchHHHHHHHHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeC
Q psy7460         802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNS  879 (1026)
Q Consensus       802 ~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~  879 (1026)
                      .||+||.+..|++|+.++||++|++|||.+.++   .|.........+++.+|..+.  ++++||++|++ |||+|+|++
T Consensus       167 ~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l~~-GPV~v~i~~  242 (322)
T 1pci_A          167 HGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVES  242 (322)
T ss_dssp             CGGGCBCHHHHHHHHHHHCBCBTTTSCCCSSCC---CCTTTTCCSCCBCCCCEEECCSSBHHHHHHHHHH-SCEEEEECT
T ss_pred             CCCCCCCHHHHHHHHHHhCCCchhhCCCCCCCC---CCCCCCCCCceEEEeeEEEeCCCcHHHHHHHHHH-CCEEEEEec
Confidence            899999999999999999999999999999887   898764333335777887764  68999999986 999999999


Q ss_pred             C--CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceE
Q psy7460         880 D--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGY  953 (1026)
Q Consensus       880 ~--~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~  953 (1026)
                      .  .|++|++|||..+   |+. .++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||++.++|
T Consensus       243 ~~~~f~~Y~~Gvy~~~---c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~y  318 (322)
T 1pci_A          243 KGRPFQLYKGGIFEGP---CGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYY  318 (322)
T ss_dssp             TCHHHHTEEEEEECCS---CCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCCEE
T ss_pred             ccccccccCCeEeCCC---CCC-CCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccceeE
Confidence            5  6999999999764   875 479999999999999999999999999999999999999996    89999999999


Q ss_pred             EEE
Q psy7460         954 ATI  956 (1026)
Q Consensus       954 ~~~  956 (1026)
                      |++
T Consensus       319 p~~  321 (322)
T 1pci_A          319 PTK  321 (322)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            965

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=9.5e-67  Score=580.39  Aligned_cols=286  Identities=30%  Similarity=0.590  Sum_probs=244.2

Q ss_pred             HHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h-------CCCcccccCcCCCCCHHHHH-hhcC-CCCCchhhhh
Q psy7460         656 ETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H-------KKHERYGTSEFSDRSPEEIL-CKTG-FKWSERTYER  721 (1026)
Q Consensus       656 ~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~-------~~~~~~giN~faD~t~eEf~-~~~g-~~~~~~~~~~  721 (1026)
                      .+|++||++|+|.|.+.+|+.+| .||++|+     +       +.++++|+|+|+|||.+||+ .++| .+....... 
T Consensus         3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~-   80 (310)
T 2o6x_A            3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILS-   80 (310)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHCCCCCCGGGGSC-
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhcCCCCCcccccc-
Confidence            47999999999999988899999 9999996     1       24578899999999999998 5676 443111000 


Q ss_pred             hhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC--
Q psy7460         722 IVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--  799 (1026)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~--  799 (1026)
                         .     ...+... ..+||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+.  
T Consensus        81 ---~-----~~~~~~~-~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~~~  151 (310)
T 2o6x_A           81 ---H-----GVPYEAN-NRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPW  151 (310)
T ss_dssp             ---S-----SEECCC-----CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCGGG
T ss_pred             ---c-----CCccccc-cCCCCCeEecCcCCCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhhcc
Confidence               0     0011111 1269999999999999999999999999999999999999999999999999999999985  


Q ss_pred             CCCCCCCCCchHHHHHHHHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEE
Q psy7460         800 QCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLL  877 (1026)
Q Consensus       800 ~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i  877 (1026)
                      .+.||+||.+..|++|+.+.||++|++|||.+.++   .|..+..... +++.+|..++  ++++||++|+++|||+|+|
T Consensus       152 ~~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i  227 (310)
T 2o6x_A          152 GNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEG---QCRYNKQLGV-AKVTGFYTVHSGSEVELKNLVGAEGPAAVAV  227 (310)
T ss_dssp             TCCGGGCCCHHHHHHHHTTSCBCBTTTSCCCSSCC---CCCCCGGGCC-EEEEEEEEECSCCHHHHHHHHHHHCCEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHCCcCchhcCCCCCCCC---CccCCCCCCc-eEeCeEEEeCCCCHHHHHHHHHhcCCeEEEE
Confidence            37899999999999999999999999999999887   8987544333 4677887664  7999999999999999999


Q ss_pred             eCC-CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcceEEE
Q psy7460         878 NSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYAT  955 (1026)
Q Consensus       878 ~~~-~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~~~~  955 (1026)
                      ++. .|++|++|||..+  .|+...++|||+|||||+++|++|||||||||+.|||+|||||+|+. |.|||++.++||+
T Consensus       228 ~~~~~f~~Y~~Gvy~~~--~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~p~  305 (310)
T 2o6x_A          228 DVESDFMMYRSGIYQSQ--TCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPM  305 (310)
T ss_dssp             CCCHHHHTEEEEEECCS--SCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEEEE
T ss_pred             ecchhhhhCCCceecCC--CCCCCCCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeEEE
Confidence            996 7999999999865  58766789999999999999999999999999999999999999997 8999999999998


Q ss_pred             Eee
Q psy7460         956 IDV  958 (1026)
Q Consensus       956 ~~~  958 (1026)
                      +.-
T Consensus       306 ~~~  308 (310)
T 2o6x_A          306 VAR  308 (310)
T ss_dssp             EEE
T ss_pred             eec
Confidence            743

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=3.4e-66  Score=574.67  Aligned_cols=283  Identities=23%  Similarity=0.406  Sum_probs=242.0

Q ss_pred             HHHHHHHHhCCcCCCHHHHHHHHHHHHHhh---hCCCcccccCcCCCCCHHHHHh-hcCCCCCchhhhhhhhhhhhhhhh
Q psy7460         657 TFKAFIVKRGRQYANDEEIKERFEYFKQDG---HKKHERYGTSEFSDRSPEEILC-KTGFKWSERTYERIVADREKVEKM  732 (1026)
Q Consensus       657 ~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~---~~~~~~~giN~faD~t~eEf~~-~~g~~~~~~~~~~~~~~~~~~~~~  732 (1026)
                      +|++||++|+|.|.+.+|+.+|+.||++|+   +. |.. |+|+|+|||.+||+. +++.+..   .... ..     ..
T Consensus         7 ~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~~-g~N~F~Dlt~eEf~~~~~~~~~~---~~~~-~~-----~~   75 (312)
T 1xkg_A            7 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NGG-AINHLSDLSLDEFKNRFLMSAEA---FEHL-KT-----QF   75 (312)
T ss_dssp             SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HCC-CCCTTTTSCHHHHHHHHSBCHHH---HHHH-HH-----HH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-ccC-CCCcccCCCHHHHHHHhcCCCCc---cccc-cC-----Cc
Confidence            599999999999999899999999999996   33 333 999999999999994 7763211   0000 00     00


Q ss_pred             hhccc-----CCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCC-CCCCC
Q psy7460         733 LMEVE-----KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC-SGCDG  806 (1026)
Q Consensus       733 ~~~~~-----~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~-~gC~G  806 (1026)
                      .+...     ...+||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+  + .||+|
T Consensus        76 ~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~--~~~GC~G  153 (312)
T 1xkg_A           76 DLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA--SQHGCHG  153 (312)
T ss_dssp             C-----CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHT--CSSTTBC
T ss_pred             ccccccccccccccCCCccccccCCCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhcc--CCCCCCC
Confidence            11110     1237999999999999999999999999999999999999999999999999999999998  4 89999


Q ss_pred             CCchHHHHHHHHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHh-cCCEEEEEeCC---
Q psy7460         807 CFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYK-YGPLSVLLNSD---  880 (1026)
Q Consensus       807 G~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~-~GPV~v~i~~~---  880 (1026)
                      |.+..|++|+.+.||++|++|||.+.++   .|. +... ..+++.+|..+.  ++++||++|++ +|||+|+|++.   
T Consensus       154 G~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~-~~~~-~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~  228 (312)
T 1xkg_A          154 DTIPRGIEYIQHNGVVQESYYRYVAREQ---SCR-RPNA-QRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD  228 (312)
T ss_dssp             CCHHHHHHHHHHHCEEBGGGSCCCSSCC---CCC-CCSS-CEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHH
T ss_pred             CCHHHHHHHHHHcCCCccccCCccCCCC---CCC-CCCC-ceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccc
Confidence            9999999999889999999999999887   898 4333 345888888774  79999999999 99999999994   


Q ss_pred             CCcccCCcceeCCCCCCC-CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEeec
Q psy7460         881 LIHDYNGTPIRKNDETCS-PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVV  959 (1026)
Q Consensus       881 ~f~~y~~Gi~~~~~~~c~-~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~~~  959 (1026)
                      .|++|++|||..+  .|+ ... +|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.++||++..+
T Consensus       229 ~f~~Y~~GVy~~~--~c~~~~~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~~~~  305 (312)
T 1xkg_A          229 AFRHYDGRTIIQR--DNGYQPN-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILGQT  305 (312)
T ss_dssp             HHHTCCSSSCBCC--CCSSCCE-EEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECTTC
T ss_pred             cccccCCcEEcCC--CCCCCcC-ceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeeccCC
Confidence            7999999999875  576 546 999999999999999999999999999999999999999999999999999987554


Q ss_pred             C
Q psy7460         960 K  960 (1026)
Q Consensus       960 ~  960 (1026)
                      .
T Consensus       306 ~  306 (312)
T 1xkg_A          306 G  306 (312)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=4.8e-60  Score=545.58  Aligned_cols=273  Identities=28%  Similarity=0.504  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHhccc--------CCCcccc-cccCCCCCHHHHh-hhcCCCCCccchhhhhhhhHHHHHhhhcccCCCCC
Q psy7460         307 EEIKERFEYFKQDGH--------KKHERYG-TSEFSDRSPEEIL-CKTGFKWSERTYERIVADREKVEKMLMEVEKDGPV  376 (1026)
Q Consensus       307 ~E~~~R~~~F~~n~~--------~~~~~~g-~n~fsD~t~eEf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  376 (1026)
                      .|+.+|+.||++|++        ..++++| +|+|+|||.|||+ .+++.+.......     .....  ........+|
T Consensus       135 ~~~~~R~~if~~N~~~I~~~N~~~~~~~~~~~n~faDlT~eEf~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~l  207 (441)
T 3pdf_A          135 SQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPK-----PAPLT--AEIQQKILFL  207 (441)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccCCceEeecccccccCCHHHHHHHhCCCcccccccc-----cCccc--cccccccccC
Confidence            456789999999953        2345667 8999999999999 4544432211000     00000  0001224579


Q ss_pred             CCceeccCCC---CCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCcc--CCHHHHHhhhcCCCCCCCCCCCc-hH-HH
Q psy7460         377 PDAWDWRKKN---VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVE--FSKSQLVECAKQCSGCGGCDGLE-QP-IE  449 (1026)
Q Consensus       377 P~~~DwR~~~---~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~--lS~q~lvdC~~~~~gC~G~~G~~-~a-~~  449 (1026)
                      |++||||+++   +||||||||.||||||||++++||++++|+++.++.  ||||+|+||+..+.||+|  |++ .| ++
T Consensus       208 P~s~DwR~~~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~~~GC~G--G~~~~aa~~  285 (441)
T 3pdf_A          208 PTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEG--GFPYLIAGK  285 (441)
T ss_dssp             CSCEETTCBTTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHTTH
T ss_pred             CCCEECCcCCCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccCCCCCCC--CchhHHHHH
Confidence            9999999964   899999999999999999999999999999998754  999999999987899999  999 66 89


Q ss_pred             HHHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEec------CCHHHHHHHHHcCCCEEEEEecC-ccccccC
Q psy7460         450 YTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF------NGSETMKKILYKYGPLSVGLNSH-LIHFYNG  522 (1026)
Q Consensus       450 ~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~  522 (1026)
                      |+++.||++|++|||.+.+.   .|......... .+..|..+      .++++||++|+++|||+|+|++. .|++|++
T Consensus       286 yi~~~Gi~tE~~yPY~~~~~---~C~~~~~~~~~-~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~s  361 (441)
T 3pdf_A          286 YAQDFGLVEEACFPYTGTDS---PCKMKEDCFRY-YSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKK  361 (441)
T ss_dssp             HHHHTCBCBGGGSCCCSSCC---CSCCCSSCCCB-CEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCS
T ss_pred             HHHhcCCCcHHHeeecccCC---CCCCcccccee-eeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCC
Confidence            99999999999999999887   88875443332 44566655      37999999999999999999995 7999999


Q ss_pred             CceeCCCC--CCCC-CCCCeEEEEEEeeec--CCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         523 TPIRKNDE--TCSP-YDLGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       523 Gi~~~~~~--~c~~-~~~~HaV~iVGyG~~--~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                      |||..+..  .|.+ ..+||||+|||||++  +|++|||||||||+.|||+|||||+||.|.|||++.+.++.|.
T Consensus       362 GVy~~~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~P~  436 (441)
T 3pdf_A          362 GIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPI  436 (441)
T ss_dssp             SEECCC---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEEEC
T ss_pred             ceEecCCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEeecc
Confidence            99963221  1222 357999999999985  7899999999999999999999999999999999999988875

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=1.5e-59  Score=524.88  Aligned_cols=260  Identities=25%  Similarity=0.432  Sum_probs=185.0

Q ss_pred             CCcccccc-cCCCCCHHHHhhhcCCCCCccchhhhhhhhHHHHHhhhcccCCCCCCCceeccCC----CCCCCCCCCCCC
Q psy7460         323 KHERYGTS-EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAAC  397 (1026)
Q Consensus       323 ~~~~~g~n-~fsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~----~~vt~vk~Qg~C  397 (1026)
                      .++++|+| +|+|||.|||+.++|.+......... .. ..    ........+||++||||++    |+||||||||.|
T Consensus        24 ~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~-~~-~~----~~~~~~~~~lP~s~DwR~~w~~~g~vtpVkdQg~C   97 (325)
T 3hhi_A           24 GIWKAKYDGVMQNITLREAKRLNGVIKKNNNASIL-PK-RR----FTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSAC   97 (325)
T ss_dssp             --------------------------------CCS-CB-CC----CCHHHHHCCCCSCEEHHHHSTTCTTTTCCCBCCSS
T ss_pred             CceEEecccccccCCHHHHHHHhCCCCCCcccccc-cC-cc----ccccccccCCCCcEehhHhcCCCCccccccCCCCc
Confidence            35678999 89999999999766654321110000 00 00    0000112479999999998    899999999999


Q ss_pred             cchHHHHhHHHHHHHHHHHcCC-CccCCHHHHHhhhcC-CCCCCCCCCCc-hHHHHHHhCCcCCCCCCccc-CC-----C
Q psy7460         398 GSCWAFSIAGMLEGQYAIKTGK-LVEFSKSQLVECAKQ-CSGCGGCDGLE-QPIEYTHQAGLESEKDYPYR-NG-----N  468 (1026)
Q Consensus       398 gSCwAfa~~~~~e~~~~i~~~~-~~~lS~q~lvdC~~~-~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~-~~-----~  468 (1026)
                      |||||||++++||++++|+++. ++.||+|+|+||+.. +.||+|  |++ .||+|+.+.||++|++|||. +.     +
T Consensus        98 GSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~~~~GC~G--G~~~~A~~yi~~~Gi~~e~~yPY~~~~c~~~~~  175 (325)
T 3hhi_A           98 GSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNG--GDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSK  175 (325)
T ss_dssp             BCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGGGBCTTBC--BCHHHHHHHHHHTCBCBTTTSCCSSCCCBSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhccCCCCCCCC--CCHHHHHHHHHHhCCCcccccCCcccccccccc
Confidence            9999999999999999999997 999999999999874 689999  999 99999999999999999998 32     1


Q ss_pred             --CCcccccc--------------C-CCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecC-ccccccCCceeCCCC
Q psy7460         469 --GEKFKCAY--------------D-KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       469 --~~~~~C~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~~~~~~  530 (1026)
                        .....|..              . ......+.+..|.. .++++||++|+++|||+|+|++. .|++|++|||.   .
T Consensus       176 ~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~v-~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~---~  251 (325)
T 3hhi_A          176 SKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYAL-QGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH---H  251 (325)
T ss_dssp             CTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEEE-CSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEEC---C
T ss_pred             ccccCCCCCCcccCCcchhhcccccccccceEEeecceEe-CCHHHHHHHHHHCCCEEEEEEeccccccccCceec---C
Confidence              00114541              0 01112223456764 89999999999999999999994 79999999994   4


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEehh
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVV  594 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~~~  594 (1026)
                      .|....+||||+|||||+++|++|||||||||+.|||+|||||+||.|.|||++.+.++.|+++
T Consensus       252 ~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~p~~~  315 (325)
T 3hhi_A          252 VSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIPLAP  315 (325)
T ss_dssp             CSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEEEC--
T ss_pred             CCCCCCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEeecCCC
Confidence            4555556999999999999999999999999999999999999999999999999999998743

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=1.4e-58  Score=533.40  Aligned_cols=274  Identities=28%  Similarity=0.494  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHhh---hC-----CCcccc-cCcCCCCCHHHHHh-hcCCCCCchhhhhhhhhhhhhhhhhhcccCCCCC
Q psy7460         673 EEIKERFEYFKQDG---HK-----KHERYG-TSEFSDRSPEEILC-KTGFKWSERTYERIVADREKVEKMLMEVEKDGPV  742 (1026)
Q Consensus       673 ~E~~~R~~iF~~N~---~~-----~~~~~g-iN~faD~t~eEf~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  742 (1026)
                      .|+.+|+.||++|+   +.     ...+++ +|+|+|||.+||+. +++.+.......     ...  ..........+|
T Consensus       135 ~~~~~R~~if~~N~~~I~~~N~~~~~~~~~~~n~faDlT~eEf~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~l  207 (441)
T 3pdf_A          135 SQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPK-----PAP--LTAEIQQKILFL  207 (441)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccCCceEeecccccccCCHHHHHHHhCCCcccccccc-----cCc--cccccccccccC
Confidence            46678999999996   22     234677 89999999999994 444332111000     000  000111234589


Q ss_pred             CCceecCCCC---CCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCcee--cCHHHHHhhcCCCCCCCCCCchHH-HHHH
Q psy7460         743 PDAWDWRKKN---VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVE--FSKSQLVECAKQCSGCDGCFFEPS-IEYT  816 (1026)
Q Consensus       743 P~s~DwR~~g---~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~--lS~Q~lvdC~~~~~gC~GG~~~~a-~~y~  816 (1026)
                      |++||||+++   +|+||||||.||||||||++++||++++|+++.++.  ||+|+|+||+..+.||+||.+..+ ++|+
T Consensus       208 P~s~DwR~~~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~~~GC~GG~~~~aa~~yi  287 (441)
T 3pdf_A          208 PTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYA  287 (441)
T ss_dssp             CSCEETTCBTTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCTTBCCCHHHHTTHHH
T ss_pred             CCCEECCcCCCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccCCCCCCCCchhHHHHHHH
Confidence            9999999974   899999999999999999999999999999987654  999999999988899999999987 8999


Q ss_pred             HHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeec------ChHHHHHHHHHhcCCEEEEEeC-CCCcccCCcc
Q psy7460         817 HQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF------NGSETMKKILYKYGPLSVLLNS-DLIHDYNGTP  889 (1026)
Q Consensus       817 ~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~------~~~~~ik~~l~~~GPV~v~i~~-~~f~~y~~Gi  889 (1026)
                      +++||++|++|||.+.++   .|........ +.+..|..+      .++++||++|+++|||+|+|++ +.|++|++||
T Consensus       288 ~~~Gi~tE~~yPY~~~~~---~C~~~~~~~~-~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGV  363 (441)
T 3pdf_A          288 QDFGLVEEACFPYTGTDS---PCKMKEDCFR-YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGI  363 (441)
T ss_dssp             HHTCBCBGGGSCCCSSCC---CSCCCSSCCC-BCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSE
T ss_pred             HhcCCCcHHHeeecccCC---CCCCccccce-eeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCce
Confidence            999999999999999887   8886543322 244555554      4799999999999999999999 4799999999


Q ss_pred             eeCCCCC--CCC-CCCCeEEEEEEeeec--CCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEe
Q psy7460         890 IRKNDET--CSP-YDLGHAVLLVGYGKQ--DNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  957 (1026)
Q Consensus       890 ~~~~~~~--c~~-~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~  957 (1026)
                      |..+...  |.. ..++|||+|||||++  +|++|||||||||++|||+|||||+|+.|.|||++.++++...
T Consensus       364 y~~~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~P~  436 (441)
T 3pdf_A          364 YHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPI  436 (441)
T ss_dssp             ECCC---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEEEC
T ss_pred             EecCCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEeecc
Confidence            9876211  111 358999999999985  6899999999999999999999999999999999998877644

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=2.2e-58  Score=488.47  Aligned_cols=211  Identities=37%  Similarity=0.797  Sum_probs=191.6

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHh-
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQ-  453 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~-  453 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|+++.++.||||+|+||+..+.||+|  |.+ .|++|+++ 
T Consensus         1 lP~~~DwR~~~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~~i~~~   78 (214)
T 1m6d_A            1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMG--GLPSNAYSAIKNL   78 (214)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999977789999  999 99999876 


Q ss_pred             CCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCC
Q psy7460         454 AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETC  532 (1026)
Q Consensus       454 ~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c  532 (1026)
                      +||++|++|||.+.+.   .|.....+..+ .+..+..++ ++++||++|+++|||+|+|++..|++|++|||.+....|
T Consensus        79 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~-~i~~~~~i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c  154 (214)
T 1m6d_A           79 GGLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLC  154 (214)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCCCGGGCCB-CCSEEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGS
T ss_pred             cCcccccCcCcCCCCC---cCCCCcccceE-EecCEEEeChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcC
Confidence            5999999999998877   89876544433 456666554 899999999999999999999779999999996433458


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         533 SPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       533 ~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                      ++..++|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||+++++||++|
T Consensus       155 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~~~~~~~  214 (214)
T 1m6d_A          155 SPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             CTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEECC
T ss_pred             CCCcCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCCCccccCceeEEEEeC
Confidence            877789999999999999999999999999999999999999999999999999999875

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=3.8e-58  Score=513.43  Aligned_cols=261  Identities=25%  Similarity=0.419  Sum_probs=186.0

Q ss_pred             CCcccccC-cCCCCCHHHHHhhcCCCCCchhhhhhhhhhhhhhhhhhc-ccCCCCCCCceecCCC----CCCCCCCCCCC
Q psy7460         689 KHERYGTS-EFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLME-VEKDGPVPDAWDWRKK----NVTGPAGDQAA  762 (1026)
Q Consensus       689 ~~~~~giN-~faD~t~eEf~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lP~s~DwR~~----g~v~pv~dQg~  762 (1026)
                      .+.++|+| +|+|||.|||+.++|.+........ . .     ...+. .....+||++||||++    |+|+||||||.
T Consensus        24 ~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~-~-~-----~~~~~~~~~~~~lP~s~DwR~~w~~~g~vtpVkdQg~   96 (325)
T 3hhi_A           24 GIWKAKYDGVMQNITLREAKRLNGVIKKNNNASI-L-P-----KRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSA   96 (325)
T ss_dssp             --------------------------------CC-S-C-----BCCCCHHHHHCCCCSCEEHHHHSTTCTTTTCCCBCCS
T ss_pred             CceEEecccccccCCHHHHHHHhCCCCCCccccc-c-c-----CccccccccccCCCCcEehhHhcCCCCccccccCCCC
Confidence            45678999 8999999999976765432110000 0 0     00010 0112579999999998    89999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHhcCC-ceecCHHHHHhhcC-CCCCCCCCCchHHHHHHHHcCCCCCCcccCc-CC-----C-
Q psy7460         763 CGSCWAFSIAGMLEGQYAIKTGK-LVEFSKSQLVECAK-QCSGCDGCFFEPSIEYTHQAGLESEKDYPYK-NA-----N-  833 (1026)
Q Consensus       763 CGSCWAfa~~~ale~~~~i~~~~-~~~lS~Q~lvdC~~-~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~-~~-----~-  833 (1026)
                      ||||||||++++||++++|++++ ++.||+|+|+||+. .+.||+||++..||+|+.++||++|++|||. +.     + 
T Consensus        97 CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~~~~GC~GG~~~~A~~yi~~~Gi~~e~~yPY~~~~c~~~~~~  176 (325)
T 3hhi_A           97 CGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKS  176 (325)
T ss_dssp             SBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGGGBCTTBCBCHHHHHHHHHHTCBCBTTTSCCSSCCCBSSSCC
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCCcccccCCccccccccccc
Confidence            99999999999999999999987 89999999999986 4689999999999999999999999999998 32     1 


Q ss_pred             -CCcccccC--------------CC-CcceEEecceeeecChHHHHHHHHHhcCCEEEEEeC-CCCcccCCcceeCCCCC
Q psy7460         834 -GEKFKCAY--------------DK-SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDET  896 (1026)
Q Consensus       834 -~~~~~C~~--------------~~-~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~-~~f~~y~~Gi~~~~~~~  896 (1026)
                       +....|..              .. ...+.+.+..|. +.++++||++|+++|||+|+|++ +.|++|++|||..+   
T Consensus       177 ~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~-v~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~---  252 (325)
T 3hhi_A          177 KNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYA-LQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHV---  252 (325)
T ss_dssp             TTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEE-ECSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEECCC---
T ss_pred             cccCCCCCCcccCCcchhhcccccccccceEEeecceE-eCCHHHHHHHHHHCCCEEEEEEeccccccccCceecCC---
Confidence             00114541              00 011222345665 48899999999999999999999 57999999999865   


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEeecC
Q psy7460         897 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATIDVVK  960 (1026)
Q Consensus       897 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~~~~  960 (1026)
                      |+...++|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.++++...+..
T Consensus       253 ~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~p~~~~  316 (325)
T 3hhi_A          253 SGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIPLAPN  316 (325)
T ss_dssp             SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEEEC---
T ss_pred             CCCCCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEeecCCCC
Confidence            5555679999999999999999999999999999999999999999999999999888766643

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=1e-57  Score=509.34  Aligned_cols=254  Identities=27%  Similarity=0.471  Sum_probs=204.6

Q ss_pred             CCCcccccccCCCCCHHHHhhhcCCCCCccchhhhhhhhHHHHHhhhcccCCCCCCCceeccCC----CCCCCCCCCCCC
Q psy7460         322 KKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAAC  397 (1026)
Q Consensus       322 ~~~~~~g~n~fsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~----~~vt~vk~Qg~C  397 (1026)
                      ..++++|+| |+|+|.||++.++|.+.......      .    ... .....+||++||||++    +.||||||||.|
T Consensus        22 ~~~~~~~~n-f~~~~~e~~~~~lg~~~~~~~~~------~----~~~-~~~~~~lP~s~DwR~~~~~c~~vtpVkdQg~C   89 (317)
T 3pbh_A           22 NTTWQAGHN-FYNVDMSYLKRLCGTFLGGPKPP------Q----RVM-FTEDLKLPASFDAREQWPQCPTIKEIRDQGSC   89 (317)
T ss_dssp             TCSEEECCC-CSSCCHHHHHHTCCBCTTCCCCS------E----EEC-CCSCCCCCSSEEHHHHCTTCGGGTCCCBCCSS
T ss_pred             CCCeEEeec-cccCCHHHHHHHcCCCCCccccC------c----ccc-cccccCCCCCEechhccCCCCCcCCccccCCc
Confidence            356788999 99999999888888754321110      0    000 1223579999999987    689999999999


Q ss_pred             cchHHHHhHHHHHHHHHHHcCC--CccCCHHHHHhhhc--CCCCCCCCCCCc-hHHHHHHhCCcCCCCCC-------ccc
Q psy7460         398 GSCWAFSIAGMLEGQYAIKTGK--LVEFSKSQLVECAK--QCSGCGGCDGLE-QPIEYTHQAGLESEKDY-------PYR  465 (1026)
Q Consensus       398 gSCwAfa~~~~~e~~~~i~~~~--~~~lS~q~lvdC~~--~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~y-------pY~  465 (1026)
                      |||||||++++||++++|+++.  ++.||+|+|+||+.  .+.||+|  |++ .||+|+.+.||++|.+|       ||.
T Consensus        90 GSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~G--G~~~~A~~yi~~~Gi~te~~Y~~~~~c~PY~  167 (317)
T 3pbh_A           90 GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNG--GYPAEAWNFWTRKGLVSGGLYESHVGCRPYS  167 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGC--BCHHHHHHHHHHTCEEBBCSTTCCCBSSCCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCC--CCHHHHHHHHHHhCCCcchhccCCCCCcCcc
Confidence            9999999999999999999875  89999999999986  3689999  999 99999999999999888       998


Q ss_pred             CCC------CCccccccC-------------CC----CceeeecceeEecCCHHHHHHHHHcCCCEEEEEec-Ccccccc
Q psy7460         466 NGN------GEKFKCAYD-------------KS----KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNS-HLIHFYN  521 (1026)
Q Consensus       466 ~~~------~~~~~C~~~-------------~~----~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~-~~~~~y~  521 (1026)
                      +..      .....|...             ..    ..+.+....|....++++||++|+++|||+|+|++ ..|++|+
T Consensus       168 ~~~c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~  247 (317)
T 3pbh_A          168 IPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYK  247 (317)
T ss_dssp             SCCCCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEE
T ss_pred             cCcccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCC
Confidence            531      111134321             00    00111223344456899999999999999999999 4799999


Q ss_pred             CCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         522 GTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       522 ~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                      +|||.   ..|+...++|||+|||||+++|++|||||||||++|||+|||||+||.|.|||++.+..+.|+
T Consensus       248 ~GVy~---~~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~p~  315 (317)
T 3pbh_A          248 SGVYQ---HVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR  315 (317)
T ss_dssp             EEEEC---CCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBC
T ss_pred             CcEEc---cCCCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeeecC
Confidence            99994   456665569999999999999999999999999999999999999999999999999988875

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=5.5e-57  Score=478.18  Aligned_cols=209  Identities=33%  Similarity=0.659  Sum_probs=188.3

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++|+||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+.+.
T Consensus         1 lP~~~Dwr~~g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~y~~~~   78 (215)
T 3i06_A            1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG--GLMNNAFEWIVQE   78 (215)
T ss_dssp             CCSEEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCSSSCGGGC--CCHHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999987889999  999 999998764


Q ss_pred             ---CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCC
Q psy7460         455 ---GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 ---Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~  530 (1026)
                         ||++|++|||.+.+.....|........ +++.+|..++ ++++||++|+++|||+|+|+++.|++|++|||.    
T Consensus        79 ~~gGi~~e~~yPY~~~~~~~~~C~~~~~~~~-~~i~~~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~----  153 (215)
T 3i06_A           79 NNGAVYTEDSYPYASGEGISPPCTTSGHTVG-ATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----  153 (215)
T ss_dssp             STTEEEC-CCSCCCCTTSCCCCCCCSSCCEE-EEEEEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC----
T ss_pred             ccccccccCccCCcCCCCCCCccccCCcccc-eEecceEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCccc----
Confidence               7999999999987654457876654333 3566776664 899999999999999999999889999999993    


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEE
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI  591 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~  591 (1026)
                      .|....++|||+|||||++++++|||||||||+.|||+|||||+||.|.|||++.+.||++
T Consensus       154 ~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgi~~~~~~~~~  214 (215)
T 3i06_A          154 SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             SCCCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEE
T ss_pred             CCCCCccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCCCeecCCCceeEEec
Confidence            4766678999999999999999999999999999999999999999999999999999985

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=6.8e-57  Score=478.12  Aligned_cols=208  Identities=37%  Similarity=0.774  Sum_probs=190.8

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||...+.||+|  |.+ .|++|+.+.
T Consensus         1 lP~~~Dwr~~~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~gC~G--G~~~~a~~~~~~~   78 (215)
T 3kwz_A            1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQYVQKN   78 (215)
T ss_dssp             CTTCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCCCccCcCCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999977889999  999 999998665


Q ss_pred             -CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCC
Q psy7460         455 -GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKND  529 (1026)
Q Consensus       455 -Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~  529 (1026)
                       ||++|++|||.+.+.   .|....... ...+..|..++  ++++||++|+++|||+|+|++.  .|++|++|||.  .
T Consensus        79 ~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~--~  152 (215)
T 3kwz_A           79 RGIDSEDAYPYVGQEE---SCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY--D  152 (215)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGE-EECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--C
T ss_pred             CCccccccCCCccCCC---ccccCCCCc-eeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeEC--C
Confidence             999999999999887   888665443 34677887775  8999999999999999999995  69999999995  4


Q ss_pred             CCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CcccccceeeeeEE
Q psy7460         530 ETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  591 (1026)
Q Consensus       530 ~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~~~~~~  591 (1026)
                      ..|+...++|||+|||||++++++|||||||||++|||+|||||+|+. |.|||++.++||++
T Consensus       153 ~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~  215 (215)
T 3kwz_A          153 ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             TTCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred             CCCCCChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeeeeC
Confidence            568766789999999999999999999999999999999999999997 89999999999974

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=1.1e-56  Score=475.40  Aligned_cols=212  Identities=35%  Similarity=0.747  Sum_probs=192.6

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc-C
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-G  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~-G  820 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||.+..|++|+++. |
T Consensus         1 lP~~~DwR~~~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~i~~~~G   80 (214)
T 1m6d_A            1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGG   80 (214)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcCcCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcC
Confidence            799999999999999999999999999999999999999999999999999999999778899999999999999764 9


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSP  899 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c~~  899 (1026)
                      |++|++|||.+.+.   .|.....+.. +++..+..+. ++++||++|+++|||+++|++..|++|++|||..+...|+.
T Consensus        81 i~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~  156 (214)
T 1m6d_A           81 LETEDDYSYQGHMQ---SCQFSAEKAK-VYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSP  156 (214)
T ss_dssp             BCBTTTSCCCSSCC---CCCCCGGGCC-BCCSEEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCT
T ss_pred             cccccCcCcCCCCC---cCCCCcccce-EEecCEEEeChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCC
Confidence            99999999998877   8987654433 3566776654 78999999999999999999977999999999865445877


Q ss_pred             CCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEe
Q psy7460         900 YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  957 (1026)
Q Consensus       900 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~  957 (1026)
                      ..++|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.++||+++
T Consensus       157 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~~~~~~~  214 (214)
T 1m6d_A          157 WLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             TCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEECC
T ss_pred             CcCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCCCccccCceeEEEEeC
Confidence            7789999999999999999999999999999999999999999999999999999753

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=7e-56  Score=469.77  Aligned_cols=206  Identities=34%  Similarity=0.698  Sum_probs=187.6

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+++.
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~yi~~~   78 (216)
T 1ppo_A            1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKN   78 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999876789999  999 999999999


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~  530 (1026)
                      ||++|++|||.+.+.   .|.........+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|||.   .
T Consensus        79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~---~  151 (216)
T 1ppo_A           79 GIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFE---G  151 (216)
T ss_dssp             CBCBTTTSCCCSSCC---CCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEEC---C
T ss_pred             CcCccccCCccCCCC---CcCCCCCCCceEEeccEEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceEC---C
Confidence            999999999999877   788654333345778888765  79999999986 9999999994  69999999994   4


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEE
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  591 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~  591 (1026)
                      .|+. .++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||++.++||++
T Consensus       152 ~~~~-~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~  215 (216)
T 1ppo_A          152 PCGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             SCCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             CCCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeEee
Confidence            6875 479999999999999999999999999999999999999995    89999999999985

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=6.5e-56  Score=471.86  Aligned_cols=208  Identities=38%  Similarity=0.781  Sum_probs=189.1

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC--CCCCCCCCCCc-hHHHHHH
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLE-QPIEYTH  452 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~--~~gC~G~~G~~-~a~~~~~  452 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..  +.||+|  |.+ .|++|+.
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~G--G~~~~a~~y~~   78 (220)
T 2xu3_A            1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG--GLMDYAFQYVQ   78 (220)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBC--CCHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCC--CCHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999863  689999  999 9999995


Q ss_pred             -hCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCC
Q psy7460         453 -QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKN  528 (1026)
Q Consensus       453 -~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~  528 (1026)
                       ++||++|++|||.+.+.   .|...... ..+.+..|..++ ++++||++|+++|||+|+|++.  .|++|++|||.  
T Consensus        79 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~-~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~--  152 (220)
T 2xu3_A           79 DNGGLDSEESYPYEATEE---SCKYNPKY-SVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF--  152 (220)
T ss_dssp             HHTCEEBTTTSCCCSSCC---CCCCCGGG-EEECCSEEEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--
T ss_pred             HhCCcccccccCCcccCc---CccCCCCC-cceeeeeEEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEc--
Confidence             89999999999999887   89876433 345778888776 8999999999999999999995  69999999995  


Q ss_pred             CCCCCCCCCCeEEEEEEee----ecCCccEEEEEcCCCCCCCCCcEEEEEecC-CcccccceeeeeEE
Q psy7460         529 DETCSPYDLGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  591 (1026)
Q Consensus       529 ~~~c~~~~~~HaV~iVGyG----~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~~~~~~  591 (1026)
                      .+.|+...++|||+|||||    +++|++|||||||||++|||+|||||+|+. |.|||++.++||++
T Consensus       153 ~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~  220 (220)
T 2xu3_A          153 EPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  220 (220)
T ss_dssp             CTTCCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence            3458766789999999999    678999999999999999999999999997 88999999999974

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=7.5e-56  Score=470.14  Aligned_cols=209  Identities=34%  Similarity=0.741  Sum_probs=192.7

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc-C
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-G  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~-G  820 (1026)
                      ||++||||++|+|+||||||.||||||||++++||+++++++++++.||+|+|+||+..+.||+||.+..|++|++++ |
T Consensus         1 lP~~~Dwr~~~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~~G   80 (215)
T 3kwz_A            1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG   80 (215)
T ss_dssp             CTTCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCCCccCcCCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence            799999999999999999999999999999999999999999999999999999999878999999999999999766 9


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET  896 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~  896 (1026)
                      |++|++|||.+.+.   .|+..+... ..++..|..++  ++++||++|+++|||+++|++.  .|++|++|||..+  .
T Consensus        81 i~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~--~  154 (215)
T 3kwz_A           81 IDSEDAYPYVGQEE---SCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDE--S  154 (215)
T ss_dssp             EEBTTTSCCCSSCC---CCCCCGGGE-EECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--T
T ss_pred             ccccccCCCccCCC---ccccCCCCc-eeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCC--C
Confidence            99999999999887   898665443 44778888775  7999999999999999999986  6999999999876  5


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcceEEEE
Q psy7460         897 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  956 (1026)
Q Consensus       897 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~~~~~  956 (1026)
                      |+...++|||+|||||++++++|||||||||++|||+|||||+|+. |.|||++.++||++
T Consensus       155 ~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~  215 (215)
T 3kwz_A          155 CNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             CCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred             CCCChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeeeeC
Confidence            7667899999999999999999999999999999999999999997 89999999999963

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=9.6e-56  Score=468.65  Aligned_cols=210  Identities=32%  Similarity=0.642  Sum_probs=190.0

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc--
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA--  819 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~--  819 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||++..|++|++++  
T Consensus         1 lP~~~Dwr~~g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~~   80 (215)
T 3i06_A            1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN   80 (215)
T ss_dssp             CCSEEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCSSSCGGGCCCHHHHHHHHHHHST
T ss_pred             CCCcccCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCCCCCCCCCCCHHHHHHHHHHhcc
Confidence            799999999999999999999999999999999999999999999999999999999888999999999999999764  


Q ss_pred             -CCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCC
Q psy7460         820 -GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       820 -Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c  897 (1026)
                       |+++|++|||.+.+.....|....... .+++.+|..++ ++++||++|+++|||+++|+++.|++|++|||..    |
T Consensus        81 gGi~~e~~yPY~~~~~~~~~C~~~~~~~-~~~i~~~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~~----~  155 (215)
T 3i06_A           81 GAVYTEDSYPYASGEGISPPCTTSGHTV-GATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----C  155 (215)
T ss_dssp             TEEEC-CCSCCCCTTSCCCCCCCSSCCE-EEEEEEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECS----C
T ss_pred             ccccccCccCCcCCCCCCCccccCCccc-ceEecceEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCcccC----C
Confidence             799999999998766555787655433 34677777664 7999999999999999999998899999999963    6


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEE
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI  956 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~  956 (1026)
                      ....++|||+|||||++++++|||||||||++|||+|||||+|+.|.|||++.+.+|++
T Consensus       156 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgi~~~~~~~~~  214 (215)
T 3i06_A          156 VSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             CCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEE
T ss_pred             CCCccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCCCeecCCCceeEEec
Confidence            55678999999999999999999999999999999999999999999999999999876

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=4.8e-56  Score=473.30  Aligned_cols=209  Identities=38%  Similarity=0.778  Sum_probs=189.5

Q ss_pred             CCCceeccCCC-CCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC--CCCCCCCCCCc-hHHHHH
Q psy7460         376 VPDAWDWRKKN-VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLE-QPIEYT  451 (1026)
Q Consensus       376 lP~~~DwR~~~-~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~--~~gC~G~~G~~-~a~~~~  451 (1026)
                      ||++||||+++ +||||||||.||||||||++++||++++|++++++.||+|+|+||+..  +.||+|  |.+ .|++|+
T Consensus         1 lP~~~DwR~~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~G--G~~~~a~~~~   78 (220)
T 8pch_A            1 YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQG--GLPSQAFEYI   78 (220)
T ss_dssp             CCSCEEHHHHSSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGC--CCHHHHHHHH
T ss_pred             CCCCEecCcCCCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCC--CCHHHHHHHH
Confidence            79999999998 899999999999999999999999999999999999999999999863  689999  999 999998


Q ss_pred             HhC-CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC-ccccccCCceeC
Q psy7460         452 HQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRK  527 (1026)
Q Consensus       452 ~~~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~~~  527 (1026)
                      .+. ||++|++|||.+.+.   .|........ +.+..|..++  ++++||++|+++|||+++|++. .|++|++|||. 
T Consensus        79 ~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~-  153 (220)
T 8pch_A           79 RYNKGIMGEDTYPYKGQDD---HCKFQPDKAI-AFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYS-  153 (220)
T ss_dssp             HHHTCEEBTTTSCCCSSCC---CCCCCGGGEE-ECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEEC-
T ss_pred             HHcCCcCcccccCccCCCC---CCCCCCCcce-EEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCccc-
Confidence            766 999999999999877   8887654443 3567777764  8999999999999999999996 79999999995 


Q ss_pred             CCCCCCCC--CCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         528 NDETCSPY--DLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       528 ~~~~c~~~--~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                       ...|...  .++|||+|||||+++|++|||||||||+.|||+|||||+|+.|.|||++.++||+|.
T Consensus       154 -~~~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~p~  219 (220)
T 8pch_A          154 -STSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL  219 (220)
T ss_dssp             -CSSCCCSTTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred             -CCcCCCCCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCCCccccCCCceeEeec
Confidence             3456543  689999999999999999999999999999999999999999999999999999985

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=3e-56  Score=497.47  Aligned_cols=253  Identities=26%  Similarity=0.450  Sum_probs=204.9

Q ss_pred             CCCcccccCcCCCCCHHHHHhhcCCCCCchhhhhhhhhhhhhhhhhhcccCCCCCCCceecCCC----CCCCCCCCCCCC
Q psy7460         688 KKHERYGTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKK----NVTGPAGDQAAC  763 (1026)
Q Consensus       688 ~~~~~~giN~faD~t~eEf~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~----g~v~pv~dQg~C  763 (1026)
                      +...++|+| |+|+|.||++.++|.+.......           .........+||++||||++    +.|+||||||.|
T Consensus        22 ~~~~~~~~n-f~~~~~e~~~~~lg~~~~~~~~~-----------~~~~~~~~~~lP~s~DwR~~~~~c~~vtpVkdQg~C   89 (317)
T 3pbh_A           22 NTTWQAGHN-FYNVDMSYLKRLCGTFLGGPKPP-----------QRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSC   89 (317)
T ss_dssp             TCSEEECCC-CSSCCHHHHHHTCCBCTTCCCCS-----------EEECCCSCCCCCSSEEHHHHCTTCGGGTCCCBCCSS
T ss_pred             CCCeEEeec-cccCCHHHHHHHcCCCCCccccC-----------cccccccccCCCCCEechhccCCCCCcCCccccCCc
Confidence            457789999 99999999988888764321100           11112223689999999998    689999999999


Q ss_pred             chHHHHHHHHHHHHHHHHhcCC--ceecCHHHHHhhcC--CCCCCCCCCchHHHHHHHHcCCCCCCcc-------cCcCC
Q psy7460         764 GSCWAFSIAGMLEGQYAIKTGK--LVEFSKSQLVECAK--QCSGCDGCFFEPSIEYTHQAGLESEKDY-------PYKNA  832 (1026)
Q Consensus       764 GSCWAfa~~~ale~~~~i~~~~--~~~lS~Q~lvdC~~--~~~gC~GG~~~~a~~y~~~~Gi~~e~~y-------PY~~~  832 (1026)
                      |||||||++++||++++|+++.  ++.||+|+|+||+.  .+.||+||++..|++|+.++||++|.+|       ||...
T Consensus        90 GSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~~~~c~PY~~~  169 (317)
T 3pbh_A           90 GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIP  169 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHTCEEBBCSTTCCCBSSCCCSC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCCcchhccCCCCCcCcccC
Confidence            9999999999999999999874  79999999999986  4689999999999999999999999888       99853


Q ss_pred             C------CCcccccCC-------------CC----cceEEecceeeecChHHHHHHHHHhcCCEEEEEeC-CCCcccCCc
Q psy7460         833 N------GEKFKCAYD-------------KS----KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS-DLIHDYNGT  888 (1026)
Q Consensus       833 ~------~~~~~C~~~-------------~~----~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~-~~f~~y~~G  888 (1026)
                      .      +....|...             ..    ..+.+....|....++++||++|+++|||+|+|++ +.|++|++|
T Consensus       170 ~c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~G  249 (317)
T 3pbh_A          170 PCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG  249 (317)
T ss_dssp             CCCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEE
T ss_pred             cccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCc
Confidence            2      111244321             00    00111122233345899999999999999999998 579999999


Q ss_pred             ceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEE
Q psy7460         889 PIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT  955 (1026)
Q Consensus       889 i~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~  955 (1026)
                      ||..+   |+...++|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.++.+.
T Consensus       250 Vy~~~---~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~  313 (317)
T 3pbh_A          250 VYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI  313 (317)
T ss_dssp             EECCC---SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECC
T ss_pred             EEccC---CCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeee
Confidence            99876   66666799999999999999999999999999999999999999999999999887664

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=1.3e-55  Score=475.95  Aligned_cols=210  Identities=36%  Similarity=0.749  Sum_probs=189.4

Q ss_pred             CCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHh
Q psy7460         375 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQ  453 (1026)
Q Consensus       375 ~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~  453 (1026)
                      +||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+.+
T Consensus         1 ~lP~~~DwR~~g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~~~~gC~G--G~~~~a~~y~~~   78 (246)
T 2b1m_A            1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYN--GWHYQSFEWVVK   78 (246)
T ss_dssp             -CCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSBTTTB--CCHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcCCCCCCCC--CCHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999999999999876789999  999 99999987


Q ss_pred             C-CcCCCCCCcccCCCCCccccccCCCCceeeeccee---EecC--CHHHHHHHHHc---CCCEEEEEecCccccccCCc
Q psy7460         454 A-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDF---LYFN--GSETMKKILYK---YGPLSVGLNSHLIHFYNGTP  524 (1026)
Q Consensus       454 ~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~---~gPv~v~i~~~~~~~y~~Gi  524 (1026)
                      . ||++|++|||.+.+.   .|....... .+.+..|   ..+.  ++++||++|++   +|||+|+|++..|++|++||
T Consensus        79 ~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Gi  154 (246)
T 2b1m_A           79 HGGIASEADYPYKARDG---KCKANEIQD-KVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGI  154 (246)
T ss_dssp             TTCBCBTTTSCCCSSCC---CCCGGGCCC-CBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSE
T ss_pred             hCCcCccccccccCCCC---cCcCCCCCC-ceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhccccee
Confidence            6 999999999999887   788654333 3466777   6554  88999999998   69999999997799999999


Q ss_pred             eeCCCCCCCCCC-CCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         525 IRKNDETCSPYD-LGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       525 ~~~~~~~c~~~~-~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                      |.  ...|+... ++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||++.++||++.
T Consensus       155 y~--~~~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~~  225 (246)
T 2b1m_A          155 YD--GGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE  225 (246)
T ss_dssp             EC--CTTCCSSCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEECC
T ss_pred             ec--CCCCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEEEec
Confidence            94  23687654 89999999999999999999999999999999999999997    899999999999975

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=1.1e-55  Score=468.82  Aligned_cols=207  Identities=33%  Similarity=0.654  Sum_probs=187.8

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+++.
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~~~~~~   78 (218)
T 1yal_A            1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKG--GYQTTSLQYVANN   78 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcCCCCCCCC--CCHHHHHHHHHHc
Confidence            79999999999999999999999999999999999999999999999999999999866789999  999 999999999


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~  530 (1026)
                      ||++|++|||.+.+.   .|.........+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|||   ..
T Consensus        79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy---~~  151 (218)
T 1yal_A           79 GVHTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVF---DG  151 (218)
T ss_dssp             CBCBTTTSCCCSSCC---CCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEE---CC
T ss_pred             CCCccccccccCCCC---CcccCcCCCceEEEeeEEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceE---CC
Confidence            999999999999877   788664333345778888765  78999999986 9999999994  6999999999   44


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                      .|+. .++|||+|||||+++|++|||||||||+.|||+|||||+|+.    |.|||+++++||++.
T Consensus       152 ~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  216 (218)
T 1yal_A          152 PCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKG  216 (218)
T ss_dssp             SCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEECC
T ss_pred             CCCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeEEEe
Confidence            6875 479999999999999999999999999999999999999995    899999999999863

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=1.6e-55  Score=468.65  Aligned_cols=207  Identities=31%  Similarity=0.709  Sum_probs=186.9

Q ss_pred             CCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHh
Q psy7460         375 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQ  453 (1026)
Q Consensus       375 ~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~  453 (1026)
                      +||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .||+|+.+
T Consensus         2 ~lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~y~~~   79 (221)
T 1cqd_A            2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRG--GWMNPAFQFIVN   79 (221)
T ss_dssp             -CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHH
T ss_pred             CCCCcCcCCCCCCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCCCCCCCC--CCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999976789999  999 99999876


Q ss_pred             -CCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCC
Q psy7460         454 -AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKN  528 (1026)
Q Consensus       454 -~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~  528 (1026)
                       +||++|++|||.+.+.   .|...... ..+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|||.  
T Consensus        80 ~~Gi~~e~~yPY~~~~~---~C~~~~~~-~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~--  152 (221)
T 1cqd_A           80 NGGINSEETYPYRGQDG---ICNSTVNA-PVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFT--  152 (221)
T ss_dssp             HTSBCBTTTSCCCSSCC---CCCSSSCC-CSBCCSEEEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEEC--
T ss_pred             hCCccccccCCccCCCC---CcCCCCCC-ceEEeccEEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCcccc--
Confidence             5999999999999887   78865443 344678888765  69999999975 9999999985  69999999994  


Q ss_pred             CCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         529 DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       529 ~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                       ..|+. .++|||+|||||+++|++|||||||||+.|||+|||||+|+.    |.|||+++++||+++
T Consensus       153 -~~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~  218 (221)
T 1cqd_A          153 -GSCNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK  218 (221)
T ss_dssp             -CCCCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             -CCCCC-cCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEEEec
Confidence             46875 589999999999999999999999999999999999999983    889999999999864

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=1.8e-55  Score=466.01  Aligned_cols=204  Identities=31%  Similarity=0.694  Sum_probs=185.6

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+.+.
T Consensus         1 lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~~~~~~   78 (215)
T 1iwd_A            1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNG--GWMNNAFQYIITN   78 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999876789999  999 999998765


Q ss_pred             -CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCC
Q psy7460         455 -GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKND  529 (1026)
Q Consensus       455 -Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~  529 (1026)
                       ||++|++|||.+.+.   .|.....  ..+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|||.   
T Consensus        79 ~Gi~~e~~yPY~~~~~---~C~~~~~--~~~~i~~~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---  149 (215)
T 1iwd_A           79 GGIDTQQNYPYSAVQG---SCKPYRL--RVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFT---  149 (215)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCTTCC--CCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---
T ss_pred             CCcccccccCccCCCC---CCCCCCC--ceEEeCcEEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceEC---
Confidence             999999999999877   7886543  344677887764  78999999986 9999999995  59999999994   


Q ss_pred             CCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEE
Q psy7460         530 ETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  591 (1026)
Q Consensus       530 ~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~  591 (1026)
                      ..|+. .++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||+++++||++
T Consensus       150 ~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  214 (215)
T 1iwd_A          150 GPCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK  214 (215)
T ss_dssp             CCCCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCCCC-cCCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceeeee
Confidence            46875 689999999999999999999999999999999999999997    89999999999985

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=1.4e-55  Score=469.09  Aligned_cols=207  Identities=36%  Similarity=0.776  Sum_probs=188.2

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhh-c--CCCCCCCCCCCc-hHHHHH
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA-K--QCSGCGGCDGLE-QPIEYT  451 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~-~--~~~gC~G~~G~~-~a~~~~  451 (1026)
                      ||++||||++|+||||||||.||||||||++++||++++|+++++++||+|+|+||+ .  .+.||+|  |.+ .|++|+
T Consensus         2 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~G--G~~~~a~~~~   79 (218)
T 3ovx_A            2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNG--GFMTTAFQYI   79 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGC--CCHHHHHHHH
T ss_pred             CCCCCCcccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCC--CCHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999998 3  3789999  999 999998


Q ss_pred             H-hCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCcee
Q psy7460         452 H-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIR  526 (1026)
Q Consensus       452 ~-~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~  526 (1026)
                      . ++||++|++|||.+.+.   .|....... ...+..|..++  ++++||++|+++|||+++|++.  .|++|++|||.
T Consensus        80 ~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~  155 (218)
T 3ovx_A           80 IDNKGIDSDASYPYKAMDQ---KCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY  155 (218)
T ss_dssp             HHHTCEEBTTTSCCCSSCC---CCCCCGGGE-EECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEEC
T ss_pred             HHhCCcCcccccCccCCCC---cccCCCccc-eeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceec
Confidence            5 58999999999999887   888765443 34677887775  7999999999999999999995  59999999995


Q ss_pred             CCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CcccccceeeeeEE
Q psy7460         527 KNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  591 (1026)
Q Consensus       527 ~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~~~~~~  591 (1026)
                        ...| ...++|||+|||||+++|++|||||||||+.|||+|||||+|+. |.|||++.++||++
T Consensus       156 --~~~~-~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  218 (218)
T 3ovx_A          156 --EPSC-TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  218 (218)
T ss_dssp             --CTTC-CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             --CCCC-CcccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence              3457 45789999999999999999999999999999999999999997 99999999999974

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=1.9e-55  Score=468.61  Aligned_cols=206  Identities=33%  Similarity=0.680  Sum_probs=182.3

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+.+.
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~~~~~~   78 (222)
T 3u8e_A            1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXXXG--GDADDAFRWVITN   78 (222)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC------C--CCHHHHHHHHHHH
T ss_pred             CCCcCcCCcCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCcccccCC--CCHHHHHHHHHHc
Confidence            79999999999999999999999999999999999999999999999999999999987889999  999 999998777


Q ss_pred             -CcCCCCCCcccCCCCCccccccCCCCceeeecceeEec-CCHHHHHHHHHcCCCEEEEEecC--ccccccC-CceeCCC
Q psy7460         455 -GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF-NGSETMKKILYKYGPLSVGLNSH--LIHFYNG-TPIRKND  529 (1026)
Q Consensus       455 -Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~-Gi~~~~~  529 (1026)
                       ||++|++|||.+.+.   .|......  .+.+..|..+ .++++||++|. +|||+|+|++.  .|++|++ |||.  .
T Consensus        79 ~Gi~~e~~yPY~~~~~---~C~~~~~~--~~~i~~~~~v~~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~~Giy~--~  150 (222)
T 3u8e_A           79 GGIASDANYPYTGVDG---TCDLNKPI--AARIDGYTNVPNSSSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFA--G  150 (222)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCCCSCC--CBCCCEEEECCSCHHHHHHHHH-HSCEEEEECCCSHHHHTCCCSSCBC--C
T ss_pred             CCccchhcCCCcccCC---ccccCCCC--eEEEccEEEeCCcHHHHHHHHh-CCCEEEEEEecChhhhcEeCCceEC--C
Confidence             999999999999887   88876554  4467888877 58999999995 69999999994  6999999 9994  3


Q ss_pred             CCCCC--CCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecCC----cccccceeeeeEE
Q psy7460         530 ETCSP--YDLGHAVLLVGYGKQD-DIPYWLARNSWGPIGPDEGFFKIERGNN----ACGIEQIAGYATI  591 (1026)
Q Consensus       530 ~~c~~--~~~~HaV~iVGyG~~~-g~~YWivkNSWG~~WGe~Gy~ri~r~~n----~cgi~~~~~~~~~  591 (1026)
                      ..|..  ..++|||+|||||+++ +++|||||||||+.|||+|||||+|+.|    .|||++.++||++
T Consensus       151 ~~~~~~~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~  219 (222)
T 3u8e_A          151 SSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK  219 (222)
T ss_dssp             TTCCCCGGGCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred             CcccCCCCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence            36764  3679999999999988 9999999999999999999999999987    8999999999985

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=8.6e-55  Score=460.06  Aligned_cols=202  Identities=30%  Similarity=0.627  Sum_probs=183.2

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+++.
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~yi~~~   78 (212)
T 2cio_A            1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNG--GYPWSALQLVAQY   78 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHT
T ss_pred             CCCcccCCCCCCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999876789999  999 999999999


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~  530 (1026)
                      ||++|++|||.+.+.   .|.........+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|||.   .
T Consensus        79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~  151 (212)
T 2cio_A           79 GIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFV---G  151 (212)
T ss_dssp             CBCBTTTSCCCSSCC---CCCTTTTCSCSBCCSEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---C
T ss_pred             CcCcccccCCcCCCC---CcCCCCCCCceEEEeeEEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceec---C
Confidence            999999999998877   788765323344677887765  78999999986 9999999994  69999999994   4


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEE
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  591 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~  591 (1026)
                      .|+. .++|||+|||||+    +|||||||||++|||+|||||+|+.    |.|||+++++||++
T Consensus       152 ~~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T 2cio_A          152 PCGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             CCCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred             CCCC-CCCEEEEEEEecC----CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence            6875 5799999999997    8999999999999999999999996    89999999999985

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=7.1e-55  Score=463.85  Aligned_cols=209  Identities=37%  Similarity=0.766  Sum_probs=191.0

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC--CCCCCCCCCchHHHHHHH-H
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCDGCFFEPSIEYTH-Q  818 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~--~~~gC~GG~~~~a~~y~~-~  818 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+.  .+.||+||.+..|++|+. +
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~   80 (220)
T 2xu3_A            1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN   80 (220)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999999999999999999999986  378999999999999995 8


Q ss_pred             cCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCC
Q psy7460         819 AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE  895 (1026)
Q Consensus       819 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~  895 (1026)
                      +||++|++|||.+.+.   .|+..+.. ..+++.+|..+. ++++||++|+++|||+++|++.  .|++|++|||..+  
T Consensus        81 ~Gi~~e~~yPY~~~~~---~C~~~~~~-~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~--  154 (220)
T 2xu3_A           81 GGLDSEESYPYEATEE---SCKYNPKY-SVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP--  154 (220)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGG-EEECCSEEEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--
T ss_pred             CCcccccccCCcccCc---CccCCCCC-cceeeeeEEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCC--
Confidence            9999999999999887   89876433 345788888776 7999999999999999999985  5999999999865  


Q ss_pred             CCCCCCCCeEEEEEEee----ecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcceEEEE
Q psy7460         896 TCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  956 (1026)
Q Consensus       896 ~c~~~~~~HaV~iVGyg----~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~~~~~  956 (1026)
                      .|+...++|||+|||||    +++|++|||||||||++|||+|||||+|+. |.|||++.++||++
T Consensus       155 ~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~  220 (220)
T 2xu3_A          155 DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  220 (220)
T ss_dssp             TCCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence            57766789999999999    677999999999999999999999999997 88999999999963

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=7.4e-55  Score=461.92  Aligned_cols=207  Identities=34%  Similarity=0.694  Sum_probs=188.6

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||.+..|++|++++||
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~Gi   80 (216)
T 1ppo_A            1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGI   80 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHCB
T ss_pred             CCCcCcCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccCCCCCCCCCCHHHHHHHHHHhCc
Confidence            79999999999999999999999999999999999999999999999999999999977889999999999999999999


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c  897 (1026)
                      ++|++|||.+.+.   .|+........+++.+|..+.  ++++||++|++ |||+++|++.  .|++|++|||..+   |
T Consensus        81 ~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~~---~  153 (216)
T 1ppo_A           81 HLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP---C  153 (216)
T ss_dssp             CBTTTSCCCSSCC---CCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECCS---C
T ss_pred             CccccCCccCCCC---CcCCCCCCCceEEeccEEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECCC---C
Confidence            9999999999877   787654333345778887664  78999999986 9999999984  6999999999764   7


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEE
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  956 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~  956 (1026)
                      +. .++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||++.+.||++
T Consensus       154 ~~-~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~  215 (216)
T 1ppo_A          154 GT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             CS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             CC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeEee
Confidence            65 479999999999999999999999999999999999999985    89999999999975

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=1.1e-54  Score=459.51  Aligned_cols=203  Identities=33%  Similarity=0.723  Sum_probs=184.5

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+++.
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~y~~~~   78 (214)
T 2bdz_A            1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHGCDG--GYQTTSLQYVVDN   78 (214)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999876789999  999 999999888


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~  530 (1026)
                      ||++|++|||.+.+.   .|.........+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|||.   .
T Consensus        79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~---~  151 (214)
T 2bdz_A           79 GVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYE---G  151 (214)
T ss_dssp             CEEBTTTSCCCSSCC---CCCTTTCCSCEECCCEEEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---C
T ss_pred             CCCccccCCCCCCCC---CCCCCCCCCceeeecCEEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceec---C
Confidence            999999999999877   788765433455778887764  78999999987 9999999996  69999999994   4


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                      .|+. .++|||+|||||+    +|||||||||++|||+|||||+|+.    |.|||++.++||+++
T Consensus       152 ~~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  212 (214)
T 2bdz_A          152 PCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIKG  212 (214)
T ss_dssp             SCCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEEECC
T ss_pred             CCCC-CCCeEEEEEEcCC----CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEEEec
Confidence            6875 5899999999997    8999999999999999999999996    899999999999863

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=7.6e-55  Score=465.69  Aligned_cols=208  Identities=36%  Similarity=0.717  Sum_probs=186.0

Q ss_pred             CCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhc-CCCCCCCCCCCc-hHHHHHH
Q psy7460         375 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-QCSGCGGCDGLE-QPIEYTH  452 (1026)
Q Consensus       375 ~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~-~~~gC~G~~G~~-~a~~~~~  452 (1026)
                      +||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+. .+.||+|  |.+ .|++|+.
T Consensus         1 ~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~G--G~~~~a~~y~~   78 (229)
T 1s4v_A            1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNG--GLMDYAFEFIK   78 (229)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBC--BCHHHHHHHHH
T ss_pred             CCCCCEeCCCCCCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCC--CCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999986 4789999  999 9999987


Q ss_pred             hC-CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeC
Q psy7460         453 QA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRK  527 (1026)
Q Consensus       453 ~~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~  527 (1026)
                      +. ||++|++|||.+.+.   .|.........+.+..|..++  +++.|+++|++ |||+|+|++.  .|++|++|||. 
T Consensus        79 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~-  153 (229)
T 1s4v_A           79 QRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT-  153 (229)
T ss_dssp             HHTCBCBTTTSCCCSSCC---CCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC-
T ss_pred             HhCCccccccCCccCCCC---CCCCCCCCCcEEEeeeEEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEEC-
Confidence            75 999999999999877   787653223344677887765  78899999986 9999999993  69999999994 


Q ss_pred             CCCCCCCCCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         528 NDETCSPYDLGHAVLLVGYGKQD-DIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       528 ~~~~c~~~~~~HaV~iVGyG~~~-g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                        ..|+. .++|||+|||||+++ |++|||||||||+.|||+|||||+|+.    |.|||+++++||++.
T Consensus       154 --~~c~~-~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~  220 (229)
T 1s4v_A          154 --GSCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK  220 (229)
T ss_dssp             --CCCCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             --CCCCC-CCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEec
Confidence              46875 479999999999987 999999999999999999999999995    899999999999864

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=1.3e-54  Score=468.32  Aligned_cols=212  Identities=35%  Similarity=0.701  Sum_probs=191.3

Q ss_pred             CCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc-
Q psy7460         741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-  819 (1026)
Q Consensus       741 ~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~-  819 (1026)
                      +||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+..+.||+||++..|++|++++ 
T Consensus         1 ~lP~~~DwR~~g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~~~~gC~GG~~~~a~~y~~~~~   80 (246)
T 2b1m_A            1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHG   80 (246)
T ss_dssp             -CCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSBTTTBCCHHHHHHHHHHTT
T ss_pred             CCCCcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHhC
Confidence            4899999999999999999999999999999999999999999999999999999999778899999999999999886 


Q ss_pred             CCCCCCcccCcCCCCCcccccCCCCcceEEeccee---eecC--hHHHHHHHHHh---cCCEEEEEeCCCCcccCCccee
Q psy7460         820 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF---LHFN--GSETMKKILYK---YGPLSVLLNSDLIHDYNGTPIR  891 (1026)
Q Consensus       820 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~---~~~~--~~~~ik~~l~~---~GPV~v~i~~~~f~~y~~Gi~~  891 (1026)
                      ||++|++|||.+.+.   .|....... .+++..|   ..+.  ++++||++|++   +|||+++|+++.|++|++|||.
T Consensus        81 Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~  156 (246)
T 2b1m_A           81 GIASEADYPYKARDG---KCKANEIQD-KVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYD  156 (246)
T ss_dssp             CBCBTTTSCCCSSCC---CCCGGGCCC-CBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEEC
T ss_pred             CcCccccccccCCCC---cCcCCCCCC-ceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeec
Confidence            999999999999887   888654332 3467777   6553  78999999998   5999999999779999999998


Q ss_pred             CCCCCCCCCC-CCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEEee
Q psy7460         892 KNDETCSPYD-LGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATIDV  958 (1026)
Q Consensus       892 ~~~~~c~~~~-~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~~~  958 (1026)
                      .+  .|+... ++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||++.++||++..
T Consensus       157 ~~--~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~~~  226 (246)
T 2b1m_A          157 GG--NCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEK  226 (246)
T ss_dssp             CT--TCCSSCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEECCC
T ss_pred             CC--CCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEEEecC
Confidence            74  477654 89999999999999999999999999999999999999997    8999999999998653

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=1.3e-54  Score=460.75  Aligned_cols=208  Identities=33%  Similarity=0.652  Sum_probs=189.0

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||.+..|++|++++||
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi   80 (218)
T 1yal_A            1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGV   80 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHCB
T ss_pred             CCCcCcCCCCCCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCC
Confidence            79999999999999999999999999999999999999999999999999999999977889999999999999999999


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c  897 (1026)
                      ++|++|||.+.+.   .|+........+++..|..+.  ++++||++|++ |||+++|++.  .|++|++|||..+   |
T Consensus        81 ~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~---~  153 (218)
T 1yal_A           81 HTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP---C  153 (218)
T ss_dssp             CBTTTSCCCSSCC---CCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCS---C
T ss_pred             CccccccccCCCC---CcccCcCCCceEEEeeEEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceECCC---C
Confidence            9999999999887   787654333445778887664  78999999986 9999999994  6999999999764   7


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEEe
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  957 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~~  957 (1026)
                      +. .++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||++.++||+++
T Consensus       154 ~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  216 (218)
T 1yal_A          154 GT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKG  216 (218)
T ss_dssp             CS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEECC
T ss_pred             CC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeEEEe
Confidence            65 479999999999999999999999999999999999999985    899999999999853

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=1.4e-54  Score=461.36  Aligned_cols=209  Identities=36%  Similarity=0.761  Sum_probs=190.2

Q ss_pred             CCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhc-C--CCCCCCCCCchHHHHHHH
Q psy7460         741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA-K--QCSGCDGCFFEPSIEYTH  817 (1026)
Q Consensus       741 ~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~-~--~~~gC~GG~~~~a~~y~~  817 (1026)
                      .||++||||++|+|+||||||.||||||||++++||+++++++++++.||+|+|+||+ .  .+.||+||.+..|++|+.
T Consensus         1 ~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~   80 (218)
T 3ovx_A            1 ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII   80 (218)
T ss_dssp             -CCSCEEGGGGTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHH
T ss_pred             CCCCCCCcccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999999999999999998 3  478999999999999985


Q ss_pred             -HcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeC
Q psy7460         818 -QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRK  892 (1026)
Q Consensus       818 -~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~  892 (1026)
                       +.||++|++|||.+.+.   .|...... ...++..|..+.  ++++||++|+++|||+++|++.  .|++|++|||..
T Consensus        81 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~-~~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~  156 (218)
T 3ovx_A           81 DNKGIDSDASYPYKAMDQ---KCQYDSKY-RAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE  156 (218)
T ss_dssp             HHTCEEBTTTSCCCSSCC---CCCCCGGG-EEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECC
T ss_pred             HhCCcCcccccCccCCCC---cccCCCcc-ceeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecC
Confidence             58999999999999887   89876544 344778887764  7899999999999999999985  599999999987


Q ss_pred             CCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcceEEEE
Q psy7460         893 NDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  956 (1026)
Q Consensus       893 ~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~~~~~  956 (1026)
                      +  .| ...++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.++||++
T Consensus       157 ~--~~-~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  218 (218)
T 3ovx_A          157 P--SC-TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  218 (218)
T ss_dssp             T--TC-CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             C--CC-CcccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence            6  46 46789999999999999999999999999999999999999997 99999999999974

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=1.4e-54  Score=467.20  Aligned_cols=207  Identities=34%  Similarity=0.671  Sum_probs=187.2

Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHH
Q psy7460         373 DGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYT  451 (1026)
Q Consensus       373 ~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~  451 (1026)
                      ..+||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+
T Consensus        15 ~~~lP~~~DwR~~~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~~~gC~G--G~~~~a~~yi   92 (241)
T 2oul_A           15 ENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG--GLINNAFEDM   92 (241)
T ss_dssp             CCCCSSCEEGGGTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTTSCTTBC--BCHHHHHHHH
T ss_pred             cccCCCccccCcCCCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCCCCCCCC--CCHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999976789999  999 999999


Q ss_pred             Hh-CCcCCCCCCcccCCCCCccc-cccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC-ccccccCCcee
Q psy7460         452 HQ-AGLESEKDYPYRNGNGEKFK-CAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIR  526 (1026)
Q Consensus       452 ~~-~Gi~~e~~ypY~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~~  526 (1026)
                      .+ .||++|++|||.+.+.   . |..+.... .+.+..|..+.  ++++||++|   |||+|+|++. .|++|++|||.
T Consensus        93 ~~~~Gi~~e~~yPY~~~~~---~~C~~~~~~~-~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~  165 (241)
T 2oul_A           93 IELGGICPDGDYPYVSDAP---NLCNIDRCTE-KYGIKNYLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEGIFD  165 (241)
T ss_dssp             HHTTSBCBTTSSCCCTTSC---CCCCTTSSSC-CBCCSEEEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSSBCC
T ss_pred             HHhCCcCccccCCCcCCCC---CcCCCCCCcc-ceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCcEEc
Confidence            76 8999999999999877   6 88754433 34677887664  789999999   9999999995 79999999994


Q ss_pred             CCCCCCCCCCCCeEEEEEEeeecC----------CccEEEEEcCCCCCCCCCcEEEEEecCCc----ccccceeeeeEEe
Q psy7460         527 KNDETCSPYDLGHAVLLVGYGKQD----------DIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID  592 (1026)
Q Consensus       527 ~~~~~c~~~~~~HaV~iVGyG~~~----------g~~YWivkNSWG~~WGe~Gy~ri~r~~n~----cgi~~~~~~~~~~  592 (1026)
                         ..|+.. ++|||+|||||+++          +++|||||||||+.|||+|||||+|+.|.    |||+++++||+++
T Consensus       166 ---~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~~  241 (241)
T 2oul_A          166 ---GECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE  241 (241)
T ss_dssp             ---SCBCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEECC
T ss_pred             ---CcCCCC-CCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEeeC
Confidence               378765 89999999999876          88999999999999999999999999877    9999999999864

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=9.2e-55  Score=463.42  Aligned_cols=210  Identities=38%  Similarity=0.761  Sum_probs=191.1

Q ss_pred             CCCceecCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC--CCCCCCCCCchHHHHHHHH
Q psy7460         742 VPDAWDWRKKN-VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCDGCFFEPSIEYTHQ  818 (1026)
Q Consensus       742 lP~s~DwR~~g-~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~--~~~gC~GG~~~~a~~y~~~  818 (1026)
                      ||++||||++| +|+||||||.||||||||++++||++++|++++++.||+|+|+||+.  .+.||+||.+..|++|+++
T Consensus         1 lP~~~DwR~~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~   80 (220)
T 8pch_A            1 YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRY   80 (220)
T ss_dssp             CCSCEEHHHHSSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHH
T ss_pred             CCCCEecCcCCCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHH
Confidence            79999999999 89999999999999999999999999999999999999999999985  3789999999999999977


Q ss_pred             c-CCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC-CCcccCCcceeCCC
Q psy7460         819 A-GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKND  894 (1026)
Q Consensus       819 ~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~-~f~~y~~Gi~~~~~  894 (1026)
                      + ||++|++|||.+.+.   .|+..+... .+++..|..+.  ++++||++|+++|||+++|++. .|++|++|||..+ 
T Consensus        81 ~~Gi~~e~~yPY~~~~~---~C~~~~~~~-~~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~-  155 (220)
T 8pch_A           81 NKGIMGEDTYPYKGQDD---HCKFQPDKA-IAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSST-  155 (220)
T ss_dssp             HTCEEBTTTSCCCSSCC---CCCCCGGGE-EECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCS-
T ss_pred             cCCcCcccccCccCCCC---CCCCCCCcc-eEEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCC-
Confidence            6 999999999999887   898765443 34677777664  7999999999999999999996 6999999999876 


Q ss_pred             CCCCC--CCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEe
Q psy7460         895 ETCSP--YDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  957 (1026)
Q Consensus       895 ~~c~~--~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~  957 (1026)
                       .|..  ..++|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.++||+..
T Consensus       156 -~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~p~  219 (220)
T 8pch_A          156 -SCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL  219 (220)
T ss_dssp             -SCCCSTTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred             -cCCCCCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCCCccccCCCceeEeec
Confidence             4643  3789999999999999999999999999999999999999999999999999999764

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=1.1e-54  Score=459.83  Aligned_cols=203  Identities=30%  Similarity=0.632  Sum_probs=180.2

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++|+||||||||.||||||||++++||++++|+++++++||+|+|+||+..+.||+|  |.+ .|++|+++.
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~~~~~~   78 (213)
T 3ioq_A            1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRG--GFPLYALQYVANS   78 (213)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcCCCCCCCC--CCHHHHHHHHHHc
Confidence            79999999999999999999999999999999999999999999999999999999987889999  999 999999888


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDET  531 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~~  531 (1026)
                      ||++|++|||++.+.   .|.........+++..|..++ +++++++++.++|||+|+|++.  .|++|++|||.   ..
T Consensus        79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~---~~  152 (213)
T 3ioq_A           79 GIHLRQYYPYEGVQR---QCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFA---GP  152 (213)
T ss_dssp             CEEBGGGSCCCSSCC---CCCGGGCCSCEECCCEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEEC---CS
T ss_pred             CCCchhccCcCCCCC---CCCCCccCCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEc---CC
Confidence            999999999998887   788654444455778888775 4444444555679999999995  69999999994   45


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEE
Q psy7460         532 CSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  591 (1026)
Q Consensus       532 c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~  591 (1026)
                      |. ..++|||+|||||+    +|||||||||+.|||+|||||+||.    |.|||++.++||++
T Consensus       153 ~~-~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  211 (213)
T 3ioq_A          153 CG-TSIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK  211 (213)
T ss_dssp             CC-SCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred             CC-CccCceEEEEecCC----CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence            65 46799999999986    7999999999999999999999997    89999999999985

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=2.5e-54  Score=457.18  Aligned_cols=205  Identities=31%  Similarity=0.708  Sum_probs=186.8

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc-C
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-G  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~-G  820 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+..+.||+||.+..|++|++++ |
T Consensus         1 lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G   80 (215)
T 1iwd_A            1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGG   80 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcEeCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCCCCCCCCCCHHHHHHHHHHhCC
Confidence            799999999999999999999999999999999999999999999999999999999778899999999999999775 9


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET  896 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~  896 (1026)
                      |++|++|||.+.+.   .|.....  ..+++..|..+.  ++++||++|++ |||+++|++.  .|++|++|||..+   
T Consensus        81 i~~e~~yPY~~~~~---~C~~~~~--~~~~i~~~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~---  151 (215)
T 1iwd_A           81 IDTQQNYPYSAVQG---SCKPYRL--RVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP---  151 (215)
T ss_dssp             BCBTTTSCCCSSCC---CCCTTCC--CCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC---
T ss_pred             cccccccCccCCCC---CCCCCCC--ceEEeCcEEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceECCC---
Confidence            99999999999877   8876543  345777887664  68899999986 9999999985  5999999999864   


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEE
Q psy7460         897 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  956 (1026)
Q Consensus       897 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~  956 (1026)
                      |+. .++|||+|||||+++|++|||||||||++|||+|||||+|+.    |.|||++.++||++
T Consensus       152 c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  214 (215)
T 1iwd_A          152 CGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK  214 (215)
T ss_dssp             CCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCC-cCCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceeeee
Confidence            764 679999999999999999999999999999999999999986    89999999999974

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=2.1e-54  Score=455.42  Aligned_cols=199  Identities=32%  Similarity=0.698  Sum_probs=180.3

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+|  |.+ .|++|+.+.
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~G--G~~~~a~~y~~~~   78 (208)
T 1o0e_A            1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLG--GAFVFAYQYIINN   78 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcCCCCCCCC--CCHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999876789999  999 999998775


Q ss_pred             -CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCC
Q psy7460         455 -GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKND  529 (1026)
Q Consensus       455 -Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~  529 (1026)
                       ||++|++|||.+.+.   .|...   ...+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|||.   
T Consensus        79 ~Gi~~e~~yPY~~~~~---~C~~~---~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---  148 (208)
T 1o0e_A           79 GGIDTQANYPYKAVQG---PCQAA---SKVVSIDGYNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFS---  148 (208)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCCC---CCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---
T ss_pred             CCcCcccccCccCCCC---cCCCC---CceEEeCeEEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceEC---
Confidence             999999999999877   78762   2234667887764  78899999986 9999999994  69999999994   


Q ss_pred             CCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC--CcccccceeeeeEE
Q psy7460         530 ETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN--NACGIEQIAGYATI  591 (1026)
Q Consensus       530 ~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~--n~cgi~~~~~~~~~  591 (1026)
                      ..|+. .++|||+|||||+    +|||||||||++|||+|||||+|+.  |.|||+++++||++
T Consensus       149 ~~c~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~  207 (208)
T 1o0e_A          149 GPCGT-KLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTK  207 (208)
T ss_dssp             CCCCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred             CCCCC-cCCEEEEEEEeCC----CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence            46875 5799999999997    8999999999999999999999997  89999999999985

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=1.1e-54  Score=471.11  Aligned_cols=209  Identities=34%  Similarity=0.721  Sum_probs=186.4

Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhc-CCCCCCCCCCCc-hHHHHH
Q psy7460         374 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-QCSGCGGCDGLE-QPIEYT  451 (1026)
Q Consensus       374 ~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~-~~~gC~G~~G~~-~a~~~~  451 (1026)
                      .+||++||||++++||||||||.||||||||++++||++++|++++++.||+|+|+||+. .+.||+|  |.+ .||+|+
T Consensus         2 ~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~G--G~~~~a~~yi   79 (262)
T 2fo5_A            2 SDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQG--GLMDNAFEYI   79 (262)
T ss_dssp             -CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGC--BCHHHHHHHH
T ss_pred             CCCCCcccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCC--CCHHHHHHHH
Confidence            469999999999999999999999999999999999999999999999999999999986 4789999  999 999999


Q ss_pred             HhC-CcCCCCCCcccCCCCCccccccCC--CCce-eeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCC
Q psy7460         452 HQA-GLESEKDYPYRNGNGEKFKCAYDK--SKVK-LFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGT  523 (1026)
Q Consensus       452 ~~~-Gi~~e~~ypY~~~~~~~~~C~~~~--~~~~-~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~G  523 (1026)
                      .+. ||++|++|||.+.+.   .|....  .... .+.+..|..++  ++++||++|++ |||+|+|++.  .|++|++|
T Consensus        80 ~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~i~~y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sG  155 (262)
T 2fo5_A           80 KNNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEG  155 (262)
T ss_dssp             HHTTCEEBTTTSCCCSSCC---CCCHHHHHHHCCCEECCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSS
T ss_pred             HHcCCcCchhcCCCcCccC---ccCCcccccCCceeEEeceEEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCc
Confidence            776 999999999999877   787653  1222 44678887764  78999999987 9999999995  69999999


Q ss_pred             ceeCCCCCCCCCCCCeEEEEEEeeec-CCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         524 PIRKNDETCSPYDLGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       524 i~~~~~~~c~~~~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                      ||   ...|+. .++|||+|||||++ +|++|||||||||++|||+|||||+|+.    |.|||++.++||++.
T Consensus       156 Vy---~~~c~~-~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~~  225 (262)
T 2fo5_A          156 VF---TGECGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKT  225 (262)
T ss_dssp             EE---CCCCCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEECC
T ss_pred             eE---CCCCCC-cCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEec
Confidence            99   446875 47999999999988 6999999999999999999999999996    459999999999974

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=2.6e-54  Score=459.31  Aligned_cols=208  Identities=31%  Similarity=0.720  Sum_probs=187.9

Q ss_pred             CCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc-
Q psy7460         741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-  819 (1026)
Q Consensus       741 ~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~-  819 (1026)
                      +||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||.+..||+|+.++ 
T Consensus         2 ~lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~   81 (221)
T 1cqd_A            2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNG   81 (221)
T ss_dssp             -CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHT
T ss_pred             CCCCcCcCCCCCCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCCCCCCCCCCHHHHHHHHHHhC
Confidence            6899999999999999999999999999999999999999999999999999999999778899999999999999765 


Q ss_pred             CCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCC
Q psy7460         820 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE  895 (1026)
Q Consensus       820 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~  895 (1026)
                      ||++|++|||.+.+.   .|...... ..+++..|..+.  ++++||++|++ |||+++|++.  .|++|++|||..+  
T Consensus        82 Gi~~e~~yPY~~~~~---~C~~~~~~-~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~--  154 (221)
T 1cqd_A           82 GINSEETYPYRGQDG---ICNSTVNA-PVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGS--  154 (221)
T ss_dssp             SBCBTTTSCCCSSCC---CCCSSSCC-CSBCCSEEEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCC--
T ss_pred             CccccccCCccCCCC---CcCCCCCC-ceEEeccEEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccccCC--
Confidence            999999999999887   88865432 335777887664  68999999975 9999999985  6999999999864  


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec----CCccccCCcceEEEEe
Q psy7460         896 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATID  957 (1026)
Q Consensus       896 ~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~----~n~cGi~~~~~~~~~~  957 (1026)
                       |+. .++|||+|||||+++|++|||||||||+.|||+|||||+|+    .|.|||++.++||++.
T Consensus       155 -~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~  218 (221)
T 1cqd_A          155 -CNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK  218 (221)
T ss_dssp             -CCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             -CCC-cCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEEEec
Confidence             764 58999999999999999999999999999999999999997    3899999999999854

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=2.1e-54  Score=466.49  Aligned_cols=208  Identities=34%  Similarity=0.643  Sum_probs=187.0

Q ss_pred             CCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHH
Q psy7460         372 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEY  450 (1026)
Q Consensus       372 ~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~  450 (1026)
                      ...+||++||||++++||||||||.||||||||++++||++++|+++.++.||+|+|+||+..+.||+|  |.+ .|++|
T Consensus        16 ~~~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~~~gC~G--G~~~~a~~y   93 (243)
T 3bwk_A           16 DAKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYG--GYITNAFDD   93 (243)
T ss_dssp             TCCCCCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTTSCGGGC--CCHHHHHHH
T ss_pred             ccccCCCceecCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCCC--CCHHHHHHH
Confidence            346799999999999999999999999999999999999999999999999999999999976789999  999 99999


Q ss_pred             HHh-CCcCCCCCCcccCCCCCccc-cccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC-ccccccCCce
Q psy7460         451 THQ-AGLESEKDYPYRNGNGEKFK-CAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPI  525 (1026)
Q Consensus       451 ~~~-~Gi~~e~~ypY~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~  525 (1026)
                      +.+ +||++|++|||.+.+.   . |..+.... .+.+..|..++  ++++||++|   |||+|+|++. .|++|++|||
T Consensus        94 ~~~~~Gi~~e~~yPY~~~~~---~~C~~~~~~~-~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy  166 (243)
T 3bwk_A           94 MIDLGGLCSQDDYPYVSNLP---ETCNLKRCNE-RYTIKSYVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFY  166 (243)
T ss_dssp             HHHTTSBCBTTTSCCCTTSC---CCCCGGGCSS-CBCCCEEEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSSSC
T ss_pred             HHHhCCcccccccCCcCCCC---CcCCCCCCcc-ceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCcee
Confidence            976 8999999999998877   6 88654433 34677887664  789999999   9999999996 7999999999


Q ss_pred             eCCCCCCCCCCCCeEEEEEEeeecC----------CccEEEEEcCCCCCCCCCcEEEEEecCCc----ccccceeeeeEE
Q psy7460         526 RKNDETCSPYDLGHAVLLVGYGKQD----------DIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATI  591 (1026)
Q Consensus       526 ~~~~~~c~~~~~~HaV~iVGyG~~~----------g~~YWivkNSWG~~WGe~Gy~ri~r~~n~----cgi~~~~~~~~~  591 (1026)
                      .   ..|+.. ++|||+|||||+++          |++|||||||||+.|||+|||||+|+.|.    |||++++.||++
T Consensus       167 ~---~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~  242 (243)
T 3bwk_A          167 D---GECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL  242 (243)
T ss_dssp             C---CCCCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC
T ss_pred             c---CCCCCc-CCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEec
Confidence            4   378765 89999999999876          88999999999999999999999999876    999999999986


Q ss_pred             e
Q psy7460         592 D  592 (1026)
Q Consensus       592 ~  592 (1026)
                      +
T Consensus       243 ~  243 (243)
T 3bwk_A          243 E  243 (243)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=1.6e-54  Score=463.02  Aligned_cols=207  Identities=33%  Similarity=0.692  Sum_probs=188.1

Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC--CCCCCCCCCCc-hHHHH
Q psy7460         374 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLE-QPIEY  450 (1026)
Q Consensus       374 ~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~--~~gC~G~~G~~-~a~~~  450 (1026)
                      .+||++||||++++|||||||+.||||||||++++||++++|++++++.||+|+|+||...  +.||+|  |.+ .|++|
T Consensus         5 ~~lP~~~Dwr~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~G--G~~~~a~~~   82 (224)
T 3f75_A            5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSG--GEMNDAFQY   82 (224)
T ss_dssp             GGSCSCEEHHHHTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGC--BCHHHHHHH
T ss_pred             cCCCCceecccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCC--CCHHHHHHH
Confidence            4699999999999999999999999999999999999999999999999999999999975  789999  999 99999


Q ss_pred             HHh-CCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEecC--ccccccCCce
Q psy7460         451 THQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPI  525 (1026)
Q Consensus       451 ~~~-~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~  525 (1026)
                      +.+ +||++|++|||.+.+.   .|......... .+..|..+.  ++++||++|+ +|||+|+|++.  .|++|++|||
T Consensus        83 ~~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~-~i~~~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy  157 (224)
T 3f75_A           83 VLDSGGICSEDAYPYLARDE---ECRAQSCEKVV-KILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVF  157 (224)
T ss_dssp             HHHHTCBCBTTTSCCCSSCC---CCCGGGSCCCB-CCSEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEE
T ss_pred             HHHhCCccccccCCCcCCCC---CCCcCCCCceE-EeccEEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceE
Confidence            986 8999999999999887   78866544433 567787764  8999999998 89999999995  6999999999


Q ss_pred             eCCCCCCCCCCCCeEEEEEEeeec--CCccEEEEEcCCCCCCCCCcEEEEEecC---CcccccceeeeeEE
Q psy7460         526 RKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFKIERGN---NACGIEQIAGYATI  591 (1026)
Q Consensus       526 ~~~~~~c~~~~~~HaV~iVGyG~~--~g~~YWivkNSWG~~WGe~Gy~ri~r~~---n~cgi~~~~~~~~~  591 (1026)
                         ++.|+ ..++|||+|||||++  ++++|||||||||+.|||+|||||+|+.   |.|||+++++||++
T Consensus       158 ---~~~~~-~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~  224 (224)
T 3f75_A          158 ---DASCG-TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM  224 (224)
T ss_dssp             ---CCCCC-CCCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred             ---CCCCC-CccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence               45675 468999999999998  8999999999999999999999999998   99999999999974

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=7.7e-54  Score=452.77  Aligned_cols=203  Identities=30%  Similarity=0.625  Sum_probs=184.5

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+..+.||+||.+..|++|++++||
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~Gi   80 (212)
T 2cio_A            1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGI   80 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHTCB
T ss_pred             CCCcccCCCCCCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCCCCCCCCCCCHHHHHHHHHHhCc
Confidence            79999999999999999999999999999999999999999999999999999999977889999999999999999999


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c  897 (1026)
                      ++|++|||.+.+.   .|+........+++..|..+.  ++++||++|++ |||+++|++.  .|++|++|||..+   |
T Consensus        81 ~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~---~  153 (212)
T 2cio_A           81 HYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP---C  153 (212)
T ss_dssp             CBTTTSCCCSSCC---CCCTTTTCSCSBCCSEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC---C
T ss_pred             CcccccCCcCCCC---CcCCCCCCCceEEEeeEEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecCC---C
Confidence            9999999999877   888654323345777887664  68999999986 9999999994  5999999999864   7


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEE
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  956 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~  956 (1026)
                      +. .++|||+|||||+    +|||||||||++|||+|||||+|+.    |.|||++.++||++
T Consensus       154 ~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T 2cio_A          154 GN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             CS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred             CC-CCCEEEEEEEecC----CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence            65 5799999999997    7999999999999999999999986    89999999999975

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=3.2e-54  Score=459.24  Aligned_cols=207  Identities=33%  Similarity=0.667  Sum_probs=183.9

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc-C
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-G  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~-G  820 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||.+..|++|+.++ |
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G   80 (222)
T 3u8e_A            1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGG   80 (222)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC------CCCHHHHHHHHHHHTC
T ss_pred             CCCcCcCCcCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCcccccCCCCHHHHHHHHHHcCC
Confidence            799999999999999999999999999999999999999999999999999999999878999999999999999877 9


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeec-ChHHHHHHHHHhcCCEEEEEeCC--CCcccCC-cceeCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSVLLNSD--LIHDYNG-TPIRKNDET  896 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~-Gi~~~~~~~  896 (1026)
                      |++|++|||.+.+.   .|......  .+++..|..+ .++++||++|. +|||+++|++.  .|++|++ |||..+  .
T Consensus        81 i~~e~~yPY~~~~~---~C~~~~~~--~~~i~~~~~v~~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~~Giy~~~--~  152 (222)
T 3u8e_A           81 IASDANYPYTGVDG---TCDLNKPI--AARIDGYTNVPNSSSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFAGS--S  152 (222)
T ss_dssp             BCBTTTSCCCSSCC---CCCCCSCC--CBCCCEEEECCSCHHHHHHHHH-HSCEEEEECCCSHHHHTCCCSSCBCCT--T
T ss_pred             ccchhcCCCcccCC---ccccCCCC--eEEEccEEEeCCcHHHHHHHHh-CCCEEEEEEecChhhhcEeCCceECCC--c
Confidence            99999999999887   88865544  4577888877 58999999994 69999999994  6999999 999874  3


Q ss_pred             CCC--CCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecCC----ccccCCcceEEEE
Q psy7460         897 CSP--YDLGHAVLLVGYGKQD-NIPYWLVRNSWGPIGPDEGFFKIERGNN----ACGIEQIAGYATI  956 (1026)
Q Consensus       897 c~~--~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~Gy~~i~r~~n----~cGi~~~~~~~~~  956 (1026)
                      |+.  ..++|||+|||||+++ +++|||||||||+.|||+|||||+|+.|    .|||++.++||++
T Consensus       153 ~~~~~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~  219 (222)
T 3u8e_A          153 CSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK  219 (222)
T ss_dssp             CCCCGGGCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred             ccCCCCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence            654  4689999999999988 9999999999999999999999999987    9999999999975

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=5e-54  Score=459.35  Aligned_cols=213  Identities=35%  Similarity=0.693  Sum_probs=189.2

Q ss_pred             CCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC-CCCCCCCCCchHHHHHHHHc
Q psy7460         741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-QCSGCDGCFFEPSIEYTHQA  819 (1026)
Q Consensus       741 ~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~-~~~gC~GG~~~~a~~y~~~~  819 (1026)
                      +||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+. .+.||+||.+..||+|+.++
T Consensus         1 ~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~~y~~~~   80 (229)
T 1s4v_A            1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQR   80 (229)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHH
T ss_pred             CCCCCEeCCCCCCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCCCCHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999986 57899999999999999776


Q ss_pred             -CCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCC
Q psy7460         820 -GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND  894 (1026)
Q Consensus       820 -Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~  894 (1026)
                       ||++|++|||.+.+.   .|.........+++..|..+.  +++.||++|++ |||+++|+++  .|++|++|||..+ 
T Consensus        81 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~-  155 (229)
T 1s4v_A           81 GGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-  155 (229)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-
T ss_pred             CCccccccCCccCCCC---CCCCCCCCCcEEEeeeEEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECCC-
Confidence             999999999999887   787543222345677887664  68899999986 9999999983  5999999999764 


Q ss_pred             CCCCCCCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEEeecCC
Q psy7460         895 ETCSPYDLGHAVLLVGYGKQD-NIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATIDVVKN  961 (1026)
Q Consensus       895 ~~c~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~~~~~~  961 (1026)
                        |+. .++|||+|||||+++ |++|||||||||++|||+|||||+|+.    |.|||++.+.||+++...+
T Consensus       156 --c~~-~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~~~~~  224 (229)
T 1s4v_A          156 --CGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNN  224 (229)
T ss_dssp             --CCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECCSSCC
T ss_pred             --CCC-CCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEecCCCC
Confidence              765 479999999999987 999999999999999999999999985    8999999999998765443

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=1.3e-53  Score=451.34  Aligned_cols=204  Identities=32%  Similarity=0.694  Sum_probs=185.8

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||.+..|++|++++||
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~Gi   80 (214)
T 2bdz_A            1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGV   80 (214)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHCE
T ss_pred             CCCcEeCCCCCCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence            79999999999999999999999999999999999999999999999999999999977889999999999999988899


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c  897 (1026)
                      ++|++|||.+.+.   .|+........+++..|..+.  ++++||++|++ |||+++|++.  .|++|++|||..+   |
T Consensus        81 ~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~~---~  153 (214)
T 2bdz_A           81 HTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGP---C  153 (214)
T ss_dssp             EBTTTSCCCSSCC---CCCTTTCCSCEECCCEEEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCS---C
T ss_pred             CccccCCCCCCCC---CCCCCCCCCceeeecCEEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecCC---C
Confidence            9999999999887   898765434455788887664  68999999986 9999999996  6999999999875   7


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEEe
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  957 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~~  957 (1026)
                      +. .++|||+|||||+    +|||||||||++|||+|||||+|+.    |.|||++.++||+++
T Consensus       154 ~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  212 (214)
T 2bdz_A          154 GT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIKG  212 (214)
T ss_dssp             CS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEEECC
T ss_pred             CC-CCCeEEEEEEcCC----CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEEEec
Confidence            64 5899999999997    7999999999999999999999986    899999999999763

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=2.4e-53  Score=447.37  Aligned_cols=200  Identities=33%  Similarity=0.712  Sum_probs=181.5

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHc-C
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQA-G  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~-G  820 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+..+.||+||.+..|++|+.++ |
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~G   80 (208)
T 1o0e_A            1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGG   80 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcCcCCCCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence            799999999999999999999999999999999999999999999999999999999778899999999999999776 9


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET  896 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~  896 (1026)
                      |++|++|||.+.+.   .|+..   ...+++..|..+.  ++++||++|++ |||+++|++.  .|++|++|||..+   
T Consensus        81 i~~e~~yPY~~~~~---~C~~~---~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~---  150 (208)
T 1o0e_A           81 IDTQANYPYKAVQG---PCQAA---SKVVSIDGYNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSGP---  150 (208)
T ss_dssp             BCBTTTSCCCSSCC---CCCCC---CCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC---
T ss_pred             cCcccccCccCCCC---cCCCC---CceEEeCeEEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceECCC---
Confidence            99999999999877   88761   2234677777664  68899999986 9999999994  5999999999764   


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC--CccccCCcceEEEE
Q psy7460         897 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN--NACGIEQIAGYATI  956 (1026)
Q Consensus       897 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~--n~cGi~~~~~~~~~  956 (1026)
                      |+. .++|||+|||||+    +|||||||||++|||+|||||+|+.  |.|||++.++||++
T Consensus       151 c~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~  207 (208)
T 1o0e_A          151 CGT-KLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTK  207 (208)
T ss_dssp             CCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred             CCC-cCCEEEEEEEeCC----CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence            764 5799999999997    7999999999999999999999996  89999999999974

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=7.7e-54  Score=468.58  Aligned_cols=212  Identities=28%  Similarity=0.498  Sum_probs=181.2

Q ss_pred             CCCCCceeccCC----CCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcC--CCccCCHHHHHhhhc--CCCCCCCCCCCc
Q psy7460         374 GPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAK--QCSGCGGCDGLE  445 (1026)
Q Consensus       374 ~~lP~~~DwR~~----~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~--~~~~lS~q~lvdC~~--~~~gC~G~~G~~  445 (1026)
                      .+||++||||++    +.||||||||.||||||||++++||++++|+++  .++.||+|+|+||+.  .+.||+|  |.+
T Consensus         5 ~~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~G--G~~   82 (266)
T 3cbj_A            5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNG--GYP   82 (266)
T ss_dssp             CCCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBC--BCH
T ss_pred             CCCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCC--CCH
Confidence            479999999886    789999999999999999999999999999986  479999999999986  4689999  999


Q ss_pred             -hHHHHHHhCCcCC-------CCCCcccC---------CCCCcccccc---------C----CC----CceeeecceeEe
Q psy7460         446 -QPIEYTHQAGLES-------EKDYPYRN---------GNGEKFKCAY---------D----KS----KVKLFTGKDFLY  491 (1026)
Q Consensus       446 -~a~~~~~~~Gi~~-------e~~ypY~~---------~~~~~~~C~~---------~----~~----~~~~~~~~~~~~  491 (1026)
                       .||+|+++.||++       |++|||..         .+.   .|..         .    ..    ..+.+.+..|..
T Consensus        83 ~~a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~---~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v  159 (266)
T 3cbj_A           83 AEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARP---PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSV  159 (266)
T ss_dssp             HHHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCSCCCSCSSC---CCCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCEEC
T ss_pred             HHHHHHHHHhCcCcCccccccccccCcccccccccccCCCC---CCccccCCCccccccCCCCcceeeeeeeeeeeeEEe
Confidence             9999999999999       99999983         222   3421         1    00    111223344554


Q ss_pred             cCCHHHHHHHHHcCCCEEEEEecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcE
Q psy7460         492 FNGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF  570 (1026)
Q Consensus       492 ~~~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy  570 (1026)
                      ..++++||++|+++|||+|+|++. .|++|++|||.   ..|....++|||+|||||+++|++|||||||||+.|||+||
T Consensus       160 ~~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~---~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy  236 (266)
T 3cbj_A          160 SNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ---HVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGF  236 (266)
T ss_dssp             CSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC---CCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEe---cCCCCccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCE
Confidence            468999999999999999999994 79999999994   44655556999999999999999999999999999999999


Q ss_pred             EEEEecCCcccccceeeeeEEeh
Q psy7460         571 FKIERGNNACGIEQIAGYATIDV  593 (1026)
Q Consensus       571 ~ri~r~~n~cgi~~~~~~~~~~~  593 (1026)
                      |||+|+.|.|||++.+.+++|++
T Consensus       237 ~~i~rg~n~cgI~~~~~~~~p~~  259 (266)
T 3cbj_A          237 FKILRGQDHCGIESEVVAGIPRT  259 (266)
T ss_dssp             EEEECSSCGGGTTTSCEECCBCC
T ss_pred             EEEEcCCCcccccCceEEEEeec
Confidence            99999999999999999999863

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=1.7e-53  Score=458.71  Aligned_cols=209  Identities=32%  Similarity=0.648  Sum_probs=188.5

Q ss_pred             CCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHH
Q psy7460         738 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTH  817 (1026)
Q Consensus       738 ~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~  817 (1026)
                      ...+||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+..+.||+||.+..|++|+.
T Consensus        14 ~~~~lP~~~DwR~~~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~~~gC~GG~~~~a~~yi~   93 (241)
T 2oul_A           14 EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMI   93 (241)
T ss_dssp             TCCCCSSCEEGGGTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHH
T ss_pred             ccccCCCccccCcCCCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHH
Confidence            34579999999999999999999999999999999999999999999999999999999997788999999999999998


Q ss_pred             H-cCCCCCCcccCcCCCCCccc-ccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC-CCcccCCcceeC
Q psy7460         818 Q-AGLESEKDYPYKNANGEKFK-CAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRK  892 (1026)
Q Consensus       818 ~-~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~-~f~~y~~Gi~~~  892 (1026)
                      + .||++|++|||.+.+.   . |+...... .+++..|..+.  ++++||++|   |||+++|++. .|++|++|||..
T Consensus        94 ~~~Gi~~e~~yPY~~~~~---~~C~~~~~~~-~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~  166 (241)
T 2oul_A           94 ELGGICPDGDYPYVSDAP---NLCNIDRCTE-KYGIKNYLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEGIFDG  166 (241)
T ss_dssp             HTTSBCBTTSSCCCTTSC---CCCCTTSSSC-CBCCSEEEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSSBCCS
T ss_pred             HhCCcCccccCCCcCCCC---CcCCCCCCcc-ceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCcEEcC
Confidence            6 7999999999999877   6 88654433 34778887664  689999999   9999999995 799999999976


Q ss_pred             CCCCCCCCCCCeEEEEEEeeecC----------CccEEEEEcCCCCCCCCCcEEEEEecCCc----cccCCcceEEEEe
Q psy7460         893 NDETCSPYDLGHAVLLVGYGKQD----------NIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID  957 (1026)
Q Consensus       893 ~~~~c~~~~~~HaV~iVGyg~~~----------g~~yWivkNSWG~~WGe~Gy~~i~r~~n~----cGi~~~~~~~~~~  957 (1026)
                      .   |+.. ++|||+|||||+++          |++|||||||||++|||+|||||+|+.|.    |||++.++||+++
T Consensus       167 ~---c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~~  241 (241)
T 2oul_A          167 E---CGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE  241 (241)
T ss_dssp             C---BCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEECC
T ss_pred             c---CCCC-CCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEeeC
Confidence            3   8765 89999999999876          88999999999999999999999999877    9999999999753

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=1.4e-53  Score=462.45  Aligned_cols=214  Identities=33%  Similarity=0.691  Sum_probs=188.6

Q ss_pred             CCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC-CCCCCCCCCchHHHHHHHH
Q psy7460         740 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK-QCSGCDGCFFEPSIEYTHQ  818 (1026)
Q Consensus       740 ~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~-~~~gC~GG~~~~a~~y~~~  818 (1026)
                      .+||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+. .+.||+||++..||+|+.+
T Consensus         2 ~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~~   81 (262)
T 2fo5_A            2 SDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKN   81 (262)
T ss_dssp             -CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGCBCHHHHHHHHHH
T ss_pred             CCCCCcccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCCCCHHHHHHHHHH
Confidence            369999999999999999999999999999999999999999999999999999999986 5789999999999999987


Q ss_pred             c-CCCCCCcccCcCCCCCcccccCCC--Ccce-EEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcce
Q psy7460         819 A-GLESEKDYPYKNANGEKFKCAYDK--SKVK-LFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPI  890 (1026)
Q Consensus       819 ~-Gi~~e~~yPY~~~~~~~~~C~~~~--~~~~-~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~  890 (1026)
                      + ||++|++|||.+.+.   .|....  .... .+++.+|..+.  ++++||++|++ |||+++|++.  .|++|++|||
T Consensus        82 ~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~i~~y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy  157 (262)
T 2fo5_A           82 NGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVF  157 (262)
T ss_dssp             TTCEEBTTTSCCCSSCC---CCCHHHHHHHCCCEECCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEE
T ss_pred             cCCcCchhcCCCcCccC---ccCCcccccCCceeEEeceEEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCceE
Confidence            6 999999999999887   887543  1223 45778887664  68899999987 9999999995  6999999999


Q ss_pred             eCCCCCCCCCCCCeEEEEEEeeec-CCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEEeecCC
Q psy7460         891 RKNDETCSPYDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATIDVVKN  961 (1026)
Q Consensus       891 ~~~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~~~~~~  961 (1026)
                      ..+   |+. .++|||+|||||++ +|++|||||||||++|||+|||||+|+.    |.|||++.++||++....+
T Consensus       158 ~~~---c~~-~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~~~~~~  229 (262)
T 2fo5_A          158 TGE---CGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYSKP  229 (262)
T ss_dssp             CCC---CCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEECCC---
T ss_pred             CCC---CCC-cCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEecCCCC
Confidence            764   765 47999999999988 5999999999999999999999999986    4599999999998765544

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=2e-53  Score=450.13  Aligned_cols=204  Identities=30%  Similarity=0.645  Sum_probs=181.4

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++++.||+|+|+||+..+.||+||.+..|++|++++||
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi   80 (213)
T 3ioq_A            1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANSGI   80 (213)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHCE
T ss_pred             CCCCCCcccCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcCCCCCCCCCCHHHHHHHHHHcCC
Confidence            79999999999999999999999999999999999999999999999999999999988899999999999999988899


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCS  898 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c~  898 (1026)
                      ++|++|||.+.+.   .|.........+++..|..+. +++++++++..+|||+++|++.  .|++|++|||..+   |.
T Consensus        81 ~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~~---~~  154 (213)
T 3ioq_A           81 HLRQYYPYEGVQR---QCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGP---CG  154 (213)
T ss_dssp             EBGGGSCCCSSCC---CCCGGGCCSCEECCCEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCS---CC
T ss_pred             CchhccCcCCCCC---CCCCCccCCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcCC---CC
Confidence            9999999998887   887644444455788888764 3344444445679999999995  5999999999874   64


Q ss_pred             CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEE
Q psy7460         899 PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  956 (1026)
Q Consensus       899 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~  956 (1026)
                       ..++|||+|||||+    +|||||||||++|||+|||||+|+.    |.|||++.++||++
T Consensus       155 -~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  211 (213)
T 3ioq_A          155 -TSIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK  211 (213)
T ss_dssp             -SCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred             -CccCceEEEEecCC----CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence             46799999999986    7999999999999999999999987    89999999999975

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=2e-53  Score=458.74  Aligned_cols=209  Identities=33%  Similarity=0.627  Sum_probs=187.9

Q ss_pred             CCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHH
Q psy7460         738 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTH  817 (1026)
Q Consensus       738 ~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~  817 (1026)
                      ...+||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+..+.||+||.+..|++|+.
T Consensus        16 ~~~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~~~gC~GG~~~~a~~y~~   95 (243)
T 3bwk_A           16 DAKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMI   95 (243)
T ss_dssp             TCCCCCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHH
T ss_pred             ccccCCCceecCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999997788999999999999998


Q ss_pred             H-cCCCCCCcccCcCCCCCccc-ccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC-CCcccCCcceeC
Q psy7460         818 Q-AGLESEKDYPYKNANGEKFK-CAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRK  892 (1026)
Q Consensus       818 ~-~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~-~f~~y~~Gi~~~  892 (1026)
                      + .||++|++|||.+.+.   . |+.+.... .+++..|..+.  ++++||++|   |||+++|++. .|++|++|||..
T Consensus        96 ~~~Gi~~e~~yPY~~~~~---~~C~~~~~~~-~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~  168 (243)
T 3bwk_A           96 DLGGLCSQDDYPYVSNLP---ETCNLKRCNE-RYTIKSYVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFYDG  168 (243)
T ss_dssp             HTTSBCBTTTSCCCTTSC---CCCCGGGCSS-CBCCCEEEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSSSCCC
T ss_pred             HhCCcccccccCCcCCCC---CcCCCCCCcc-ceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCceecC
Confidence            7 7999999999998876   6 87654332 34777887664  689999999   9999999995 699999999976


Q ss_pred             CCCCCCCCCCCeEEEEEEeeecC----------CccEEEEEcCCCCCCCCCcEEEEEecCCc----cccCCcceEEEEe
Q psy7460         893 NDETCSPYDLGHAVLLVGYGKQD----------NIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID  957 (1026)
Q Consensus       893 ~~~~c~~~~~~HaV~iVGyg~~~----------g~~yWivkNSWG~~WGe~Gy~~i~r~~n~----cGi~~~~~~~~~~  957 (1026)
                         .|+.. ++|||+|||||+++          |++|||||||||++|||+|||||+|+.|.    |||++.++||+++
T Consensus       169 ---~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~~  243 (243)
T 3bwk_A          169 ---ECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE  243 (243)
T ss_dssp             ---CCCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC-
T ss_pred             ---CCCCc-CCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEecC
Confidence               37765 89999999999876          88999999999999999999999999876    9999999999754

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=1.1e-53  Score=468.80  Aligned_cols=211  Identities=26%  Similarity=0.553  Sum_probs=186.0

Q ss_pred             CCCCCCceeccCC---CCCCCCCCCC---CCcchHHHHhHHHHHHHHHHHcC-C--CccCCHHHHHhhhcCCCCCCCCCC
Q psy7460         373 DGPVPDAWDWRKK---NVTGPAGDQA---ACGSCWAFSIAGMLEGQYAIKTG-K--LVEFSKSQLVECAKQCSGCGGCDG  443 (1026)
Q Consensus       373 ~~~lP~~~DwR~~---~~vt~vk~Qg---~CgSCwAfa~~~~~e~~~~i~~~-~--~~~lS~q~lvdC~~~~~gC~G~~G  443 (1026)
                      ..+||++||||++   ++||||||||   .||||||||++++||++++|+++ +  .+.||+|+|+||+.. .||+|  |
T Consensus        33 ~~~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~~-~gC~G--G  109 (277)
T 1deu_A           33 PADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA-GSCEG--G  109 (277)
T ss_dssp             GGGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSSS-EETBE--E
T ss_pred             cccCCCceecccCCCCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcCC-CCCCC--C
Confidence            4579999999998   6799999999   99999999999999999999985 4  479999999999863 79999  9


Q ss_pred             Cc-hHHHHHHhCCcCCCCCCcccCCCCCcccccc-C-------------CCCceeeecceeEecCCHHHHHHHHHcCCCE
Q psy7460         444 LE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAY-D-------------KSKVKLFTGKDFLYFNGSETMKKILYKYGPL  508 (1026)
Q Consensus       444 ~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv  508 (1026)
                      ++ .||+|+++.||++|++|||.+.+.   .|.. .             ......+.+..|..+.++++||++|+++|||
T Consensus       110 ~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~y~~v~~~~~i~~~i~~~GPV  186 (277)
T 1deu_A          110 NDLSVWDYAHQHGIPDETCNNYQAKDQ---ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPI  186 (277)
T ss_dssp             CHHHHHHHHHHTCBCBGGGSCCCSSCC---CCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCE
T ss_pred             CHHHHHHHHHHcCCCcCccCCCcCCCC---CccccccccccccCcccccccCcceEEeceeEecCCHHHHHHHHHHcCCE
Confidence            99 999999999999999999998876   5652 1             0122334667888888999999999999999


Q ss_pred             EEEEecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCC--------c
Q psy7460         509 SVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN--------A  579 (1026)
Q Consensus       509 ~v~i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n--------~  579 (1026)
                      +|+|++. .|++|++|||..   .+....+||||+|||||+++|++|||||||||++|||+|||||+|+.|        .
T Consensus       187 ~v~i~~~~~f~~Y~~GIy~~---~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~  263 (277)
T 1deu_A          187 SCGIMATERLANYTGGIYAE---YQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYN  263 (277)
T ss_dssp             EEEECCCHHHHTCCSSEECB---CCSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTB
T ss_pred             EEEEecccccccCcCcEECC---CCCCCcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCCccccccccc
Confidence            9999996 799999999953   233346899999999999999999999999999999999999999998        9


Q ss_pred             ccccceeeeeEEe
Q psy7460         580 CGIEQIAGYATID  592 (1026)
Q Consensus       580 cgi~~~~~~~~~~  592 (1026)
                      ||||+++.|++|+
T Consensus       264 cgIe~~~~~~~p~  276 (277)
T 1deu_A          264 LAIEEHCTFGDPI  276 (277)
T ss_dssp             TTTTSCEEEEEEC
T ss_pred             ceeccccEeeccc
Confidence            9999999999986

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=3.2e-53  Score=452.97  Aligned_cols=208  Identities=32%  Similarity=0.664  Sum_probs=188.4

Q ss_pred             CCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCC--CCCCCCCCchHHHHHHH
Q psy7460         740 GPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEYTH  817 (1026)
Q Consensus       740 ~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~--~~gC~GG~~~~a~~y~~  817 (1026)
                      .+||++||||++|+|+||||||.||||||||++++||+++++++++.+.||+|+|+||+..  +.||+||.+..|++|+.
T Consensus         5 ~~lP~~~Dwr~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~~   84 (224)
T 3f75_A            5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVL   84 (224)
T ss_dssp             GGSCSCEEHHHHTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHH
T ss_pred             cCCCCceecccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHHH
Confidence            4699999999999999999999999999999999999999999999999999999999864  78999999999999998


Q ss_pred             H-cCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC--hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeC
Q psy7460         818 Q-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRK  892 (1026)
Q Consensus       818 ~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~  892 (1026)
                      + +||++|++|||.+.+.   .|+....... .++..|..+.  ++++||++|+ +|||+++|++.  .|++|++|||..
T Consensus        85 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~-~~i~~~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~~  159 (224)
T 3f75_A           85 DSGGICSEDAYPYLARDE---ECRAQSCEKV-VKILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDA  159 (224)
T ss_dssp             HHTCBCBTTTSCCCSSCC---CCCGGGSCCC-BCCSEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEECC
T ss_pred             HhCCccccccCCCcCCCC---CCCcCCCCce-EEeccEEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceECC
Confidence            6 8999999999999887   8876544433 3667777664  7899999998 89999999985  699999999973


Q ss_pred             CCCCCCCCCCCeEEEEEEeeec--CCccEEEEEcCCCCCCCCCcEEEEEecC---CccccCCcceEEEE
Q psy7460         893 NDETCSPYDLGHAVLLVGYGKQ--DNIPYWLVRNSWGPIGPDEGFFKIERGN---NACGIEQIAGYATI  956 (1026)
Q Consensus       893 ~~~~c~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~Gy~~i~r~~---n~cGi~~~~~~~~~  956 (1026)
                         .|+ ..++|||+|||||++  ++++|||||||||+.|||+|||||+|+.   |.|||++.++||++
T Consensus       160 ---~~~-~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~  224 (224)
T 3f75_A          160 ---SCG-TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM  224 (224)
T ss_dssp             ---CCC-CCCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred             ---CCC-CccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence               475 578999999999998  8999999999999999999999999998   99999999999973

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=100.00  E-value=6.6e-53  Score=458.35  Aligned_cols=212  Identities=29%  Similarity=0.573  Sum_probs=177.3

Q ss_pred             CCCCceeccCC----CCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcC--CCccCCHHHHHhhhcC-CCCCCCCCCCc-h
Q psy7460         375 PVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCGGCDGLE-Q  446 (1026)
Q Consensus       375 ~lP~~~DwR~~----~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~--~~~~lS~q~lvdC~~~-~~gC~G~~G~~-~  446 (1026)
                      +||++||||++    ++||||||||.||||||||++++||++++|+++  .++.||+|+|+||... +.||+|  |++ .
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~G--G~~~~   79 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEG--GILGP   79 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBC--BCHHH
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCC--CCHHH
Confidence            68999999997    689999999999999999999999999999986  6899999999999753 579999  999 9


Q ss_pred             HHHHHHhCCcCCCCCC-------cccCC------CCCcccccc--------------CCC----CceeeecceeEecCCH
Q psy7460         447 PIEYTHQAGLESEKDY-------PYRNG------NGEKFKCAY--------------DKS----KVKLFTGKDFLYFNGS  495 (1026)
Q Consensus       447 a~~~~~~~Gi~~e~~y-------pY~~~------~~~~~~C~~--------------~~~----~~~~~~~~~~~~~~~~  495 (1026)
                      ||+|+++.||++|++|       ||...      ......|..              ...    ....+....|....++
T Consensus        80 a~~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  159 (254)
T 3qsd_A           80 AWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDE  159 (254)
T ss_dssp             HHHHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCH
T ss_pred             HHHHHHHcCCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecCCcH
Confidence            9999999999998888       99731      011113421              110    0111122334444589


Q ss_pred             HHHHHHHHcCCCEEEEEec-CccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEE
Q psy7460         496 ETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE  574 (1026)
Q Consensus       496 ~~~~~~l~~~gPv~v~i~~-~~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~  574 (1026)
                      ++||++|+++|||+|+|++ ..|++|++|||.   ..|....++|||+|||||++++++|||||||||+.|||+|||||+
T Consensus       160 ~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~---~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~  236 (254)
T 3qsd_A          160 KAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYK---HITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIV  236 (254)
T ss_dssp             HHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC---CCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEEeccccccccCCeec---cCCCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEEE
Confidence            9999999999999999999 579999999994   445445569999999999999999999999999999999999999


Q ss_pred             ecCCcccccceeeeeEE
Q psy7460         575 RGNNACGIEQIAGYATI  591 (1026)
Q Consensus       575 r~~n~cgi~~~~~~~~~  591 (1026)
                      ||.|.|||++.+.++.|
T Consensus       237 rg~n~CgI~~~~~~~~p  253 (254)
T 3qsd_A          237 RGRDECSIESEVTAGRI  253 (254)
T ss_dssp             CSSCGGGTTSSEEEEEC
T ss_pred             cCCCeecCCCceEeecc
Confidence            99999999999998876

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=1.7e-52  Score=457.92  Aligned_cols=216  Identities=28%  Similarity=0.494  Sum_probs=181.5

Q ss_pred             CCCCCceecCCC----CCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcC--CceecCHHHHHhhcC--CCCCCCCCCchH
Q psy7460         740 GPVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAK--QCSGCDGCFFEP  811 (1026)
Q Consensus       740 ~~lP~s~DwR~~----g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~--~~~~lS~Q~lvdC~~--~~~gC~GG~~~~  811 (1026)
                      .+||++||||++    +.|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.  .+.||+||++..
T Consensus         5 ~~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~   84 (266)
T 3cbj_A            5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAE   84 (266)
T ss_dssp             CCCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHH
T ss_pred             CCCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHH
Confidence            479999999987    889999999999999999999999999999875  479999999999986  478999999999


Q ss_pred             HHHHHHHcCCCC-------CCcccCcCCC------CCcccccCC-----------C--C----cceEEecceeeecChHH
Q psy7460         812 SIEYTHQAGLES-------EKDYPYKNAN------GEKFKCAYD-----------K--S----KVKLFTGKDFLHFNGSE  861 (1026)
Q Consensus       812 a~~y~~~~Gi~~-------e~~yPY~~~~------~~~~~C~~~-----------~--~----~~~~~~~~~~~~~~~~~  861 (1026)
                      ||+|++++||++       |++|||....      +....|...           .  .    ..+.+.+..|....+++
T Consensus        85 a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~  164 (266)
T 3cbj_A           85 AWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEK  164 (266)
T ss_dssp             HHHHHHHTCBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCEECCSCHH
T ss_pred             HHHHHHHhCcCcCccccccccccCcccccccccccCCCCCCccccCCCccccccCCCCcceeeeeeeeeeeeEEeCCCHH
Confidence            999999999999       9999998321      111144321           0  0    01112223343335899


Q ss_pred             HHHHHHHhcCCEEEEEeC-CCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         862 TMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIER  940 (1026)
Q Consensus       862 ~ik~~l~~~GPV~v~i~~-~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r  940 (1026)
                      +||++|+++|||+++|++ +.|++|++|||..+   |+...++|||+|||||+++|++|||||||||++|||+|||||+|
T Consensus       165 ~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~---~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r  241 (266)
T 3cbj_A          165 DIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR  241 (266)
T ss_dssp             HHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCC---SSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEEC
T ss_pred             HHHHHHHhcCCEEEEEEeccchhhcCCeEEecC---CCCccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEEEEEc
Confidence            999999999999999998 57999999999865   55556799999999999999999999999999999999999999


Q ss_pred             cCCccccCCcceEEEEee
Q psy7460         941 GNNACGIEQIAGYATIDV  958 (1026)
Q Consensus       941 ~~n~cGi~~~~~~~~~~~  958 (1026)
                      +.|.|||++.+.++...+
T Consensus       242 g~n~cgI~~~~~~~~p~~  259 (266)
T 3cbj_A          242 GQDHCGIESEVVAGIPRT  259 (266)
T ss_dssp             SSCGGGTTTSCEECCBCC
T ss_pred             CCCcccccCceEEEEeec
Confidence            999999999999887654

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=3e-52  Score=457.35  Aligned_cols=213  Identities=25%  Similarity=0.533  Sum_probs=187.8

Q ss_pred             CCCCCCCceecCCC---CCCCCCCCCC---CCchHHHHHHHHHHHHHHHHhcC-C--ceecCHHHHHhhcCCCCCCCCCC
Q psy7460         738 KDGPVPDAWDWRKK---NVTGPAGDQA---ACGSCWAFSIAGMLEGQYAIKTG-K--LVEFSKSQLVECAKQCSGCDGCF  808 (1026)
Q Consensus       738 ~~~~lP~s~DwR~~---g~v~pv~dQg---~CGSCWAfa~~~ale~~~~i~~~-~--~~~lS~Q~lvdC~~~~~gC~GG~  808 (1026)
                      ...+||++||||++   ++|+||||||   .||||||||++++||++++|+++ +  .+.||+|+|+||+.. .||+||+
T Consensus        32 ~~~~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~~-~gC~GG~  110 (277)
T 1deu_A           32 SPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA-GSCEGGN  110 (277)
T ss_dssp             CGGGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSSS-EETBEEC
T ss_pred             ccccCCCceecccCCCCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcCC-CCCCCCC
Confidence            34579999999998   6799999999   99999999999999999999875 3  479999999999864 7999999


Q ss_pred             chHHHHHHHHcCCCCCCcccCcCCCCCcccccC-CC-------------CcceEEecceeeecChHHHHHHHHHhcCCEE
Q psy7460         809 FEPSIEYTHQAGLESEKDYPYKNANGEKFKCAY-DK-------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLS  874 (1026)
Q Consensus       809 ~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~-~~-------------~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~  874 (1026)
                      +..||+|++++||++|++|||.+.+.   .|.. +.             .....+++..|..+.++++||++|+++|||+
T Consensus       111 ~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~y~~v~~~~~i~~~i~~~GPV~  187 (277)
T 1deu_A          111 DLSVWDYAHQHGIPDETCNNYQAKDQ---ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPIS  187 (277)
T ss_dssp             HHHHHHHHHHTCBCBGGGSCCCSSCC---CCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHHHcCCCcCccCCCcCCCC---CccccccccccccCcccccccCcceEEeceeEecCCHHHHHHHHHHcCCEE
Confidence            99999999999999999999998877   6652 10             1122346677888888999999999999999


Q ss_pred             EEEeCC-CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCC--------cc
Q psy7460         875 VLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNN--------AC  945 (1026)
Q Consensus       875 v~i~~~-~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n--------~c  945 (1026)
                      ++|++. .|++|++|||..+   +....++|||+|||||+++|++|||||||||++|||+|||||+|+.|        .|
T Consensus       188 v~i~~~~~f~~Y~~GIy~~~---~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~c  264 (277)
T 1deu_A          188 CGIMATERLANYTGGIYAEY---QDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL  264 (277)
T ss_dssp             EEECCCHHHHTCCSSEECBC---CSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBT
T ss_pred             EEEecccccccCcCcEECCC---CCCCcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccc
Confidence            999995 6999999999876   23356899999999999999999999999999999999999999988        99


Q ss_pred             ccCCcceEEEEe
Q psy7460         946 GIEQIAGYATID  957 (1026)
Q Consensus       946 Gi~~~~~~~~~~  957 (1026)
                      |||+.++|++..
T Consensus       265 gIe~~~~~~~p~  276 (277)
T 1deu_A          265 AIEEHCTFGDPI  276 (277)
T ss_dssp             TTTSCEEEEEEC
T ss_pred             eeccccEeeccc
Confidence            999999998764

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=100.00  E-value=1.4e-51  Score=447.81  Aligned_cols=212  Identities=28%  Similarity=0.572  Sum_probs=177.7

Q ss_pred             CCCCceecCCC----CCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcC--CceecCHHHHHhhcC-CCCCCCCCCchHHH
Q psy7460         741 PVPDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTG--KLVEFSKSQLVECAK-QCSGCDGCFFEPSI  813 (1026)
Q Consensus       741 ~lP~s~DwR~~----g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~--~~~~lS~Q~lvdC~~-~~~gC~GG~~~~a~  813 (1026)
                      +||++||||++    ++|+||||||.||||||||++++||++++|+++  .++.||+|+|+||+. .+.||+||++..||
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~   81 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAW   81 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBCHHHHH
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCCHHHHH
Confidence            68999999998    689999999999999999999999999999976  689999999999975 46899999999999


Q ss_pred             HHHHHcCCCCCCcc-------cCcCCC------CCcccccCC--------------CC----cceEEecceeeecChHHH
Q psy7460         814 EYTHQAGLESEKDY-------PYKNAN------GEKFKCAYD--------------KS----KVKLFTGKDFLHFNGSET  862 (1026)
Q Consensus       814 ~y~~~~Gi~~e~~y-------PY~~~~------~~~~~C~~~--------------~~----~~~~~~~~~~~~~~~~~~  862 (1026)
                      +|++++||++|+.|       ||....      +....|...              ..    ..+.+....|....++++
T Consensus        82 ~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (254)
T 3qsd_A           82 DYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKA  161 (254)
T ss_dssp             HHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCHHH
T ss_pred             HHHHHcCCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecCCcHHH
Confidence            99999999998888       997311      111144311              00    011111222333458999


Q ss_pred             HHHHHHhcCCEEEEEeC-CCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         863 MKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG  941 (1026)
Q Consensus       863 ik~~l~~~GPV~v~i~~-~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~  941 (1026)
                      ||++|+++|||+++|++ ..|++|++|||..+   |....++|||+|||||++++++|||||||||+.|||+|||||+|+
T Consensus       162 i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~---~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~rg  238 (254)
T 3qsd_A          162 IQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHI---TGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRG  238 (254)
T ss_dssp             HHHHHHHHCCEEEEEEEEGGGGGCCSSEECCC---SSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECS
T ss_pred             HHHHHHHcCCEEEEEEeccccccccCCeeccC---CCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEEEcC
Confidence            99999999999999998 57999999999876   444567999999999999999999999999999999999999999


Q ss_pred             CCccccCCcceEEE
Q psy7460         942 NNACGIEQIAGYAT  955 (1026)
Q Consensus       942 ~n~cGi~~~~~~~~  955 (1026)
                      .|.|||++.+.+..
T Consensus       239 ~n~CgI~~~~~~~~  252 (254)
T 3qsd_A          239 RDECSIESEVTAGR  252 (254)
T ss_dssp             SCGGGTTSSEEEEE
T ss_pred             CCeecCCCceEeec
Confidence            99999999887764

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=100.00  E-value=5.5e-49  Score=430.85  Aligned_cols=208  Identities=25%  Similarity=0.472  Sum_probs=167.4

Q ss_pred             CceeccCC-CCCC--CCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC--CCCCCCCCCCc--hHHHH
Q psy7460         378 DAWDWRKK-NVTG--PAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLE--QPIEY  450 (1026)
Q Consensus       378 ~~~DwR~~-~~vt--~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~--~~gC~G~~G~~--~a~~~  450 (1026)
                      .-.|||++ +.++  ||||||.||||||||++++||++++|+++.++.||+|+||||+..  +.||+|  |..  .++.|
T Consensus         9 ~~~dWR~~~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~G--G~~~~~~~~~   86 (265)
T 2wbf_X            9 YCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDE--GSSPMEFLQI   86 (265)
T ss_dssp             CBCGGGCTTSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTC--CCCHHHHHHH
T ss_pred             HHHhhccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCC--CCCHHHHHHH
Confidence            46899999 6777  999999999999999999999999999999999999999999864  689999  765  45677


Q ss_pred             HHhCC-cCCCCCCcccCC--CCCccccccCCCC----------------ceeeecceeEecC------C----HHHHHHH
Q psy7460         451 THQAG-LESEKDYPYRNG--NGEKFKCAYDKSK----------------VKLFTGKDFLYFN------G----SETMKKI  501 (1026)
Q Consensus       451 ~~~~G-i~~e~~ypY~~~--~~~~~~C~~~~~~----------------~~~~~~~~~~~~~------~----~~~~~~~  501 (1026)
                      +++.| |++|++|||.+.  +.   .|......                .....+..|..+.      +    +++||++
T Consensus        87 i~~~Ggi~~e~~yPY~~~~~~~---~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~  163 (265)
T 2wbf_X           87 IEDYGFLPAESNYPYNYVKVGE---QCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTE  163 (265)
T ss_dssp             HHHHCCCCBTTTSCCCGGGTTS---CCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCCccccCCcCCCCCC---CCCCccccccccccccccccccCCCceeecCCceEeeccccccchhhHHHHHHHH
Confidence            86655 999999999864  34   56543210                1112345554432      3    4789999


Q ss_pred             HHcCCCEEEEEecCcccccc-CCceeCCCCCCCCCCCCeEEEEEEeeec---CC--ccEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         502 LYKYGPLSVGLNSHLIHFYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ---DD--IPYWLARNSWGPIGPDEGFFKIER  575 (1026)
Q Consensus       502 l~~~gPv~v~i~~~~~~~y~-~Gi~~~~~~~c~~~~~~HaV~iVGyG~~---~g--~~YWivkNSWG~~WGe~Gy~ri~r  575 (1026)
                      |+++|||+|+|+++.|+.|+ +|++..  ..|+...+||||+|||||++   +|  ++|||||||||++|||+|||||+|
T Consensus       164 i~~~GPV~v~i~~~~f~~y~~~g~~~~--~~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~  241 (265)
T 2wbf_X          164 VMNKGSVIAYIKAENVMGYEFSGKKVK--NLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM  241 (265)
T ss_dssp             HHHHSCEEEEECGGGGCSGGGGSSSEE--CCCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEES
T ss_pred             HHhcCCEEEEEEcccccccccCCcEEc--CCCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEe
Confidence            99999999999997777774 454432  35877678999999999985   66  689999999999999999999987


Q ss_pred             -cCCcccccceeeeeEEe
Q psy7460         576 -GNNACGIEQIAGYATID  592 (1026)
Q Consensus       576 -~~n~cgi~~~~~~~~~~  592 (1026)
                       +.|.|||+..+.++.++
T Consensus       242 ~g~n~Cgi~~~~~~~~~~  259 (265)
T 2wbf_X          242 YGPTHCHFNFIHSVVIFN  259 (265)
T ss_dssp             SCCTTCSSCSCCEEEEEC
T ss_pred             cCCCccCcceeEEEEecc
Confidence             57899998887777765

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=100.00  E-value=1.4e-47  Score=419.59  Aligned_cols=210  Identities=26%  Similarity=0.498  Sum_probs=168.5

Q ss_pred             CceecCCC-CCCC--CCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCC--CCCCCCCCchHH-HHHHH
Q psy7460         744 DAWDWRKK-NVTG--PAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPS-IEYTH  817 (1026)
Q Consensus       744 ~s~DwR~~-g~v~--pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~--~~gC~GG~~~~a-~~y~~  817 (1026)
                      .-.|||++ |+++  ||||||.||||||||++++||++++|++++++.||+|+|+||+..  +.||+||....+ +.|++
T Consensus         9 ~~~dWR~~~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~   88 (265)
T 2wbf_X            9 YCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIE   88 (265)
T ss_dssp             CBCGGGCTTSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHH
T ss_pred             HHHhhccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHH
Confidence            45899999 6877  999999999999999999999999999999999999999999863  789999975545 57787


Q ss_pred             HcC-CCCCCcccCcCC--CCCcccccCCCC----------------cceEEecceeeecC------h----HHHHHHHHH
Q psy7460         818 QAG-LESEKDYPYKNA--NGEKFKCAYDKS----------------KVKLFTGKDFLHFN------G----SETMKKILY  868 (1026)
Q Consensus       818 ~~G-i~~e~~yPY~~~--~~~~~~C~~~~~----------------~~~~~~~~~~~~~~------~----~~~ik~~l~  868 (1026)
                      ++| |++|++|||.+.  +.   .|+....                ....+++.+|..+.      +    +++||++|+
T Consensus        89 ~~Ggi~~e~~yPY~~~~~~~---~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~  165 (265)
T 2wbf_X           89 DYGFLPAESNYPYNYVKVGE---QCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVM  165 (265)
T ss_dssp             HHCCCCBTTTSCCCGGGTTS---CCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCCccccCCcCCCCCC---CCCCccccccccccccccccccCCCceeecCCceEeeccccccchhhHHHHHHHHHH
Confidence            666 999999999864  34   5654321                01112445555432      2    478999999


Q ss_pred             hcCCEEEEEeCCCCcccC-CcceeCCCCCCCCCCCCeEEEEEEeeec---CC--ccEEEEEcCCCCCCCCCcEEEEEe-c
Q psy7460         869 KYGPLSVLLNSDLIHDYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ---DN--IPYWLVRNSWGPIGPDEGFFKIER-G  941 (1026)
Q Consensus       869 ~~GPV~v~i~~~~f~~y~-~Gi~~~~~~~c~~~~~~HaV~iVGyg~~---~g--~~yWivkNSWG~~WGe~Gy~~i~r-~  941 (1026)
                      ++|||+++|+++.|+.|. +|++..+  .|+...++|||+|||||++   +|  ++|||||||||++|||+|||||+| +
T Consensus       166 ~~GPV~v~i~~~~f~~y~~~g~~~~~--~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g  243 (265)
T 2wbf_X          166 NKGSVIAYIKAENVMGYEFSGKKVKN--LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYG  243 (265)
T ss_dssp             HHSCEEEEECGGGGCSGGGGSSSEEC--CCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSC
T ss_pred             hcCCEEEEEEcccccccccCCcEEcC--CCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecC
Confidence            999999999997777774 4544332  3876679999999999985   66  689999999999999999999997 5


Q ss_pred             CCccccCCcceEEEEee
Q psy7460         942 NNACGIEQIAGYATIDV  958 (1026)
Q Consensus       942 ~n~cGi~~~~~~~~~~~  958 (1026)
                      .|.|||+..+.++..++
T Consensus       244 ~n~Cgi~~~~~~~~~~~  260 (265)
T 2wbf_X          244 PTHCHFNFIHSVVIFNV  260 (265)
T ss_dssp             CTTCSSCSCCEEEEECE
T ss_pred             CCccCcceeEEEEeccc
Confidence            78999988877776554

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=100.00  E-value=1.1e-45  Score=409.06  Aligned_cols=231  Identities=21%  Similarity=0.240  Sum_probs=174.7

Q ss_pred             ccccCCCCCHHHHhhhcCCCCCccchhhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHH
Q psy7460         328 GTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAG  407 (1026)
Q Consensus       328 g~n~fsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~  407 (1026)
                      .+|++.++..|.|+..+|.+++..........+..        ....+||++||||+++   ||||||.||||||||+++
T Consensus        17 ~~~~~~~~~~~~~~~~lG~~p~~~d~rd~~~~~~~--------~~~~~lP~s~DwR~~~---pVkdQG~CGSCWAFAa~~   85 (291)
T 3ois_A           17 RGSHMQTVLKRRKKSGYGYIPDIADIRDFSYTPEK--------SVIAALPPKVDLTPPF---QVYDQGRIGSCTANALAA   85 (291)
T ss_dssp             ------CCCCCCCCTTCCEECCCCCTTCCBCCCCH--------HHHHTCCSEEECCCSS---CCCBCTTSSCHHHHHHHH
T ss_pred             chhhHhHhhhccccccCCCCCCCCcccccccCCCc--------cccccCCcceecccCC---CcccCCCCccHHHHHHHH
Confidence            67999999999999778876543322211000000        0123799999999984   999999999999999999


Q ss_pred             HHHHHHHHHcCCCccCCHHHHH--hhhcC---C-CCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCCCCCccccccCC--
Q psy7460         408 MLEGQYAIKTGKLVEFSKSQLV--ECAKQ---C-SGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDK--  478 (1026)
Q Consensus       408 ~~e~~~~i~~~~~~~lS~q~lv--dC~~~---~-~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~--  478 (1026)
                      +||++++ +++.++.||+|+|+  +|...   + .+|.|  |.+ .||+|+++.||++|++|||.+.+.....|.+..  
T Consensus        86 alE~~~~-~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~G--G~~~~A~~yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~  162 (291)
T 3ois_A           86 AIQFERI-HDKQSPEFIPSRLFIYYNERKIEGHVNYDSG--AMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGA  162 (291)
T ss_dssp             HHHHHHH-HTTCSSCCCBCHHHHHHHHHHHSSCTTSCCC--EEHHHHHHHHHHTCCCBGGGSCCCCCCCCTTTCSCCTTC
T ss_pred             HHHHHHH-HhCCCCCcCcCHHHHHhhhhhhhcCCCCCCC--cCHHHHHHHHHHhCCCCHhhCCCCCCccccccccccccc
Confidence            9999885 56788899999999  68742   3 34667  788 999999999999999999998742111344310  


Q ss_pred             -----------CCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecC-ccccccC--CceeCCCCCCCCCC-CCeEEE
Q psy7460         479 -----------SKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSH-LIHFYNG--TPIRKNDETCSPYD-LGHAVL  542 (1026)
Q Consensus       479 -----------~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~-~~~~y~~--Gi~~~~~~~c~~~~-~~HaV~  542 (1026)
                                 .....+.+.+|..++ ++++||++|+++|||+|+|++. .|++|++  |||.  .+.|.... ++|||+
T Consensus       163 ~~~~~p~~~C~~~~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~--~~~~~~~~~~~Hav~  240 (291)
T 3ois_A          163 PASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP--LPTKNDTLEGGHAVL  240 (291)
T ss_dssp             GGGSCCCHHHHHHHGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCC--CCCTTSCEEEEEEEE
T ss_pred             cccCCCCHHHHhhcccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEe--CCCCCCCCcCCeEEE
Confidence                       011234677888776 8999999999999999999995 7999998  9994  44565443 599999


Q ss_pred             EEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         543 LVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG  576 (1026)
Q Consensus       543 iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~  576 (1026)
                      |||||  ++++|||||||||+.|||+|||||.|+
T Consensus       241 iVGy~--~~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          241 CVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             EEEEE--TTTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             EEEEe--CCCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence            99997  578999999999999999999999998

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=100.00  E-value=3e-45  Score=405.51  Aligned_cols=232  Identities=20%  Similarity=0.247  Sum_probs=177.0

Q ss_pred             ccCcCCCCCHHHHHhhcCCCCCchhhhhhhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHH
Q psy7460         694 GTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAG  773 (1026)
Q Consensus       694 giN~faD~t~eEf~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~  773 (1026)
                      .+|++.++..|.|+..+|.+++......    ...   . .+.....+||++||||+++   ||||||.||||||||+++
T Consensus        17 ~~~~~~~~~~~~~~~~lG~~p~~~d~rd----~~~---~-~~~~~~~~lP~s~DwR~~~---pVkdQG~CGSCWAFAa~~   85 (291)
T 3ois_A           17 RGSHMQTVLKRRKKSGYGYIPDIADIRD----FSY---T-PEKSVIAALPPKVDLTPPF---QVYDQGRIGSCTANALAA   85 (291)
T ss_dssp             ------CCCCCCCCTTCCEECCCCCTTC----CBC---C-CCHHHHHTCCSEEECCCSS---CCCBCTTSSCHHHHHHHH
T ss_pred             chhhHhHhhhccccccCCCCCCCCcccc----ccc---C-CCccccccCCcceecccCC---CcccCCCCccHHHHHHHH
Confidence            6789999999999877777654322111    000   0 0000124799999999994   999999999999999999


Q ss_pred             HHHHHHHHhcCCceecCHHHHH--hhcC---CC-CCCCCCCchHHHHHHHHcCCCCCCcccCcCCCCCcccccCCC----
Q psy7460         774 MLEGQYAIKTGKLVEFSKSQLV--ECAK---QC-SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDK----  843 (1026)
Q Consensus       774 ale~~~~i~~~~~~~lS~Q~lv--dC~~---~~-~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~----  843 (1026)
                      +||++++ ++++.+.||+|+|+  +|..   .+ .+|.||.+..||+|++++||++|++|||.+.+.....|...+    
T Consensus        86 alE~~~~-~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~  164 (291)
T 3ois_A           86 AIQFERI-HDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPA  164 (291)
T ss_dssp             HHHHHHH-HTTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHTCCCBGGGSCCCCCCCCTTTCSCCTTCGG
T ss_pred             HHHHHHH-HhCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHhCCCCHhhCCCCCCccccccccccccccc
Confidence            9999886 46778899999998  6863   33 468899999999999999999999999998743212454310    


Q ss_pred             ---------CcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeC-CCCcccCC--cceeCCCCCCCC-CCCCeEEEEE
Q psy7460         844 ---------SKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNS-DLIHDYNG--TPIRKNDETCSP-YDLGHAVLLV  909 (1026)
Q Consensus       844 ---------~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~-~~f~~y~~--Gi~~~~~~~c~~-~~~~HaV~iV  909 (1026)
                               .....+++.+|..+. ++++||++|+++|||+++|++ +.|+.|++  |||..+  .|.. ..++|||+||
T Consensus       165 ~~~p~~~C~~~~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~~--~~~~~~~~~Hav~iV  242 (291)
T 3ois_A          165 SKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLP--TKNDTLEGGHAVLCV  242 (291)
T ss_dssp             GSCCCHHHHHHHGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCCC--CTTSCEEEEEEEEEE
T ss_pred             cCCCCHHHHhhcccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeCC--CCCCCCcCCeEEEEE
Confidence                     011234677888776 799999999999999999998 47999998  999876  3543 3459999999


Q ss_pred             EeeecCCccEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         910 GYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG  941 (1026)
Q Consensus       910 Gyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~  941 (1026)
                      |||  ++++|||||||||+.|||+|||||+|+
T Consensus       243 Gy~--~~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          243 GYD--DEIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             EEE--TTTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             EEe--CCCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence            997  578899999999999999999999997

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=100.00  E-value=3.8e-36  Score=343.48  Aligned_cols=210  Identities=17%  Similarity=0.240  Sum_probs=164.1

Q ss_pred             CCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHH-cCCCccCCH----------------HHHHhhhcC---
Q psy7460         375 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK-TGKLVEFSK----------------SQLVECAKQ---  434 (1026)
Q Consensus       375 ~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~-~~~~~~lS~----------------q~lvdC~~~---  434 (1026)
                      ..|..|+++....+||||||+.||||||||+++++|+.+.++ ++++++||+                |+||||+..   
T Consensus        47 ~~~~~F~~~~~~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~  126 (453)
T 2cb5_A           47 RAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEP  126 (453)
T ss_dssp             HCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCceeeeeccCCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCC
Confidence            357789999888999999999999999999999999999999 578999999                999999853   


Q ss_pred             -----------CCCCCCCCCCc-hHHHHHHhCCcCCCCCCcccCCC---------------------------C-C--cc
Q psy7460         435 -----------CSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRNGN---------------------------G-E--KF  472 (1026)
Q Consensus       435 -----------~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY~~~~---------------------------~-~--~~  472 (1026)
                                 +.||+|  |.+ .|++|++++||+++++|||++..                           + .  ..
T Consensus       127 ~d~R~v~~l~~~~gcdG--G~~~~a~~~i~kyGl~p~~~yP~~~~s~ns~~mn~~L~~kLr~~a~~LR~~~~~g~~~~~l  204 (453)
T 2cb5_A          127 EDGRLVQFLLMNPANDG--GQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEI  204 (453)
T ss_dssp             TTSHHHHHHHHCTTCSC--BCHHHHHHHHHHHCCCBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             cchhhHHHhcCCCCCCC--CChHHHHHHHHHcCccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence                       679999  999 99999999999999999998741                           1 0  00


Q ss_pred             ----------------cc----------cc-------------CC-----CCcee-eecceeEe----------------
Q psy7460         473 ----------------KC----------AY-------------DK-----SKVKL-FTGKDFLY----------------  491 (1026)
Q Consensus       473 ----------------~C----------~~-------------~~-----~~~~~-~~~~~~~~----------------  491 (1026)
                                      .|          ..             .+     ....+ +.+.+|..                
T Consensus       205 ~~~k~~~l~~iy~il~~clG~pP~~F~~~~~dkd~~~~~~~~~TP~~F~~~~~~~~~~~~~yv~l~n~p~~~~py~~~y~  284 (453)
T 2cb5_A          205 SATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYT  284 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCceeeEEEEccCCcccccCCCCHHHHHHHhcCCcCCCCCeEEEecCCCCcCcccceeE
Confidence                            14          11             00     00000 02233332                


Q ss_pred             -----------------cC-CH--HHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCC-------------------
Q psy7460         492 -----------------FN-GS--ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETC-------------------  532 (1026)
Q Consensus       492 -----------------~~-~~--~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c-------------------  532 (1026)
                                       ++ ++  +.++++|.++|||++++++..+.++++|||.  ...|                   
T Consensus       285 v~~~~Nv~~g~~~~y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~~~~~k~GI~~--~~~~~~~~~fg~~~~~m~KaeRl  362 (453)
T 2cb5_A          285 VEYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSD--MNLYDHELVFGVSLKNMNKAERL  362 (453)
T ss_dssp             ETTCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEEC--TTSBCHHHHHSCCSCSSCHHHHH
T ss_pred             EeecCcccccccccccccCHHHHHHHHHHHHHcCCCEEEEEEeChhhccCCcEEc--CccccchhhcCccccccCHHHHh
Confidence                             12 11  4455788999999999999877788999984  2223                   


Q ss_pred             --CCCCCCeEEEEEEee--ec-CCc-cEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         533 --SPYDLGHAVLLVGYG--KQ-DDI-PYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       533 --~~~~~~HaV~iVGyG--~~-~g~-~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                        ....++|||+|||||  .+ +|+ +|||||||||+.||++|||||.|+    .++..+..++++
T Consensus       363 ~~~~s~~~HAmlivGyg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~----wf~ey~~~vvV~  424 (453)
T 2cb5_A          363 TFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE----WFSEYVYEVVVD  424 (453)
T ss_dssp             HTTSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH----HHHHHEEEEEEE
T ss_pred             hccCCCCCeEEEEEEeccccccCCCccEEEEEcCcCCCcCcCceEEechh----hHhhceEEEEec
Confidence              224579999999999  75 787 999999999999999999999997    677888888775

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=100.00  E-value=7.8e-36  Score=341.21  Aligned_cols=209  Identities=18%  Similarity=0.206  Sum_probs=150.9

Q ss_pred             CCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHH-cCCCccCCH----------------HHHHhhhc----
Q psy7460         375 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK-TGKLVEFSK----------------SQLVECAK----  433 (1026)
Q Consensus       375 ~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~-~~~~~~lS~----------------q~lvdC~~----  433 (1026)
                      ..|..|+|+..+.+|||||||.||||||||+++++|+++.++ ++++++||+                |+||||+.    
T Consensus        52 ~~~~~F~~~~~~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~~  131 (457)
T 2e01_A           52 QDNRVFNTVVSTDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDID  131 (457)
T ss_dssp             HCCCCCSEECC------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTT
T ss_pred             CCCCceEEEecCCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcCCccc
Confidence            356789999888999999999999999999999999999998 888999999                78999975    


Q ss_pred             --------CCCCCCCCCCCc-hHHHHHHhCCcCCCCCCcc-cCC------------------------------CCCc--
Q psy7460         434 --------QCSGCGGCDGLE-QPIEYTHQAGLESEKDYPY-RNG------------------------------NGEK--  471 (1026)
Q Consensus       434 --------~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~ypY-~~~------------------------------~~~~--  471 (1026)
                              .+.||+|  |.+ .|++|++++||++|++||| ...                              ....  
T Consensus       132 ~r~v~~l~~~~gcdG--G~~~~a~~~i~kyGivpe~~yP~~s~~s~ns~~~n~~L~~kLr~~a~~lR~~~~~~~~~~~~l  209 (457)
T 2e01_A          132 SRLVQYLLAAPTEDG--GQYSMFLNLVKKYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSII  209 (457)
T ss_dssp             SHHHHHHHHCTTCSC--BCHHHHHHHHHHHCCCBGGGSCSCSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred             chhhhhhccCCCCCC--CCHHHHHHHHHHcCccchhhcCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhH
Confidence                    3689999  999 9999999999999999999 311                              0000  


Q ss_pred             ----------------------c-----cccc--------------------------CCCC------------ceeeec
Q psy7460         472 ----------------------F-----KCAY--------------------------DKSK------------VKLFTG  486 (1026)
Q Consensus       472 ----------------------~-----~C~~--------------------------~~~~------------~~~~~~  486 (1026)
                                            +     ++..                          +...            .+.+.+
T Consensus       210 ~~~~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~~~~~~~~TP~~F~~~~v~~~~~dyV~l~n~p~~py~~~y~v  289 (457)
T 2e01_A          210 VTLREQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKI  289 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTTCCCTTSEEEEECCTTSCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCCCCccCCCcChHHHHHHHcCCCchheEEEeecCCCccCeeEEE
Confidence                                  0     0100                          0000            000000


Q ss_pred             -------c----eeEecC-C--HHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCC--------------------
Q psy7460         487 -------K----DFLYFN-G--SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETC--------------------  532 (1026)
Q Consensus       487 -------~----~~~~~~-~--~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c--------------------  532 (1026)
                             .    .|..++ +  .+.++++|.++|||++++++..+++|++||+.   ..|                    
T Consensus       290 e~~~N~~~g~~~~y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~~~~~~~~GI~~---~~~~~~~~fg~~~~m~KaeRl~~  366 (457)
T 2e01_A          290 DRLGNVLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMD---IELWNYPAIGYNLPQQKASRIRY  366 (457)
T ss_dssp             TTCCSSTTCCCEEEEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEEC---TTSBCGGGGTCCCCCCHHHHHHT
T ss_pred             eccCCeecCCceeEEEcCHHHHHHHHHHHHHhCCCEEEEEEcCHhHcccCceec---ccccchhhcCcccccCHHHhhcc
Confidence                   0    022222 1  14566788999999999999889999999994   333                    


Q ss_pred             CCCCCCeEEEEEEeeec-CCc--cEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         533 SPYDLGHAVLLVGYGKQ-DDI--PYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       533 ~~~~~~HaV~iVGyG~~-~g~--~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                      ....++|||+|||||.+ +|+  +|||||||||+.||++|||||.|+    .|+..+..++++
T Consensus       367 ~~s~~~HAmlivGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~----wf~ey~~~ivV~  425 (457)
T 2e01_A          367 HESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK----YFEEYCFQIVVD  425 (457)
T ss_dssp             TSCCCCEEEEEEEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHH----HHHHHEEEEEEE
T ss_pred             CCCCCCeEEEEEEEEeccCCCccCEEEEEeCccCCcCCCceEEeehh----hHhhccEEEEec
Confidence            33467999999999986 788  899999999999999999999997    678888888775

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=100.00  E-value=7e-35  Score=333.03  Aligned_cols=211  Identities=17%  Similarity=0.228  Sum_probs=162.6

Q ss_pred             CCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHh-cCCceecCH----------------HHHHhhcCC---
Q psy7460         741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK-TGKLVEFSK----------------SQLVECAKQ---  800 (1026)
Q Consensus       741 ~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~-~~~~~~lS~----------------Q~lvdC~~~---  800 (1026)
                      ..|..|+++....++||+|||.||||||||++++||+.++++ +++.+.||+                |+||||+..   
T Consensus        47 ~~~~~F~~~~~~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~  126 (453)
T 2cb5_A           47 RAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEP  126 (453)
T ss_dssp             HCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCceeeeeccCCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCC
Confidence            356789999888899999999999999999999999999998 578999999                999999743   


Q ss_pred             -----------CCCCCCCCchHHHHHHHHcCCCCCCcccCcCCC---------------------------CCc----c-
Q psy7460         801 -----------CSGCDGCFFEPSIEYTHQAGLESEKDYPYKNAN---------------------------GEK----F-  837 (1026)
Q Consensus       801 -----------~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~---------------------------~~~----~-  837 (1026)
                                 +.||+||....|++|+.++||+++++|||....                           +..    . 
T Consensus       127 ~d~R~v~~l~~~~gcdGG~~~~a~~~i~kyGl~p~~~yP~~~~s~ns~~mn~~L~~kLr~~a~~LR~~~~~g~~~~~l~~  206 (453)
T 2cb5_A          127 EDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISA  206 (453)
T ss_dssp             TTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             cchhhHHHhcCCCCCCCCChHHHHHHHHHcCccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence                       689999999999999999999999999998741                           100    0 


Q ss_pred             --------------cc----------cC-CC----------Cc------ceEE--ecceee-------------------
Q psy7460         838 --------------KC----------AY-DK----------SK------VKLF--TGKDFL-------------------  855 (1026)
Q Consensus       838 --------------~C----------~~-~~----------~~------~~~~--~~~~~~-------------------  855 (1026)
                                    .|          .. ++          +.      ....  .+.+|+                   
T Consensus       207 ~k~~~l~~iy~il~~clG~pP~~F~~~~~dkd~~~~~~~~~TP~~F~~~~~~~~~~~~~yv~l~n~p~~~~py~~~y~v~  286 (453)
T 2cb5_A          207 TQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVE  286 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEET
T ss_pred             HHHHHHHHHHHHHHHHcCCCCceeeEEEEccCCcccccCCCCHHHHHHHhcCCcCCCCCeEEEecCCCCcCcccceeEEe
Confidence                          13          11 00          00      0000  222333                   


Q ss_pred             --------------ecCh---HHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCC---------------------
Q psy7460         856 --------------HFNG---SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC---------------------  897 (1026)
Q Consensus       856 --------------~~~~---~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c---------------------  897 (1026)
                                    .++-   .+.++++|.+.|||+++++++.+.++++|||..+  .|                     
T Consensus       287 ~~~Nv~~g~~~~y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~~~~~k~GI~~~~--~~~~~~~fg~~~~~m~KaeRl~~  364 (453)
T 2cb5_A          287 YLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMN--LYDHELVFGVSLKNMNKAERLTF  364 (453)
T ss_dssp             TCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTT--SBCHHHHHSCCSCSSCHHHHHHT
T ss_pred             ecCcccccccccccccCHHHHHHHHHHHHHcCCCEEEEEEeChhhccCCcEEcCc--cccchhhcCccccccCHHHHhhc
Confidence                          2221   1455678999999999999987777899999754  23                     


Q ss_pred             CCCCCCeEEEEEEee--ec-CCc-cEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEe
Q psy7460         898 SPYDLGHAVLLVGYG--KQ-DNI-PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  957 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg--~~-~g~-~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~  957 (1026)
                      .....+|||+|||||  .+ +|+ +|||||||||+.||++|||+|+|+    .++.....++++
T Consensus       365 ~~s~~~HAmlivGyg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~----wf~ey~~~vvV~  424 (453)
T 2cb5_A          365 GESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE----WFSEYVYEVVVD  424 (453)
T ss_dssp             TSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH----HHHHHEEEEEEE
T ss_pred             cCCCCCeEEEEEEeccccccCCCccEEEEEcCcCCCcCcCceEEechh----hHhhceEEEEec
Confidence            124689999999999  75 787 999999999999999999999986    454555555444

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=100.00  E-value=1.4e-34  Score=330.97  Aligned_cols=213  Identities=17%  Similarity=0.181  Sum_probs=150.1

Q ss_pred             CCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHh-cCCceecCH----------------HHHHhhcC----
Q psy7460         741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIK-TGKLVEFSK----------------SQLVECAK----  799 (1026)
Q Consensus       741 ~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~-~~~~~~lS~----------------Q~lvdC~~----  799 (1026)
                      +.|..|+|+....+|||||||.||||||||++++||+.++++ +++.+.||+                |+||||+.    
T Consensus        52 ~~~~~F~~~~~~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~~  131 (457)
T 2e01_A           52 QDNRVFNTVVSTDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDID  131 (457)
T ss_dssp             HCCCCCSEECC------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTT
T ss_pred             CCCCceEEEecCCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcCCccc
Confidence            356678888888899999999999999999999999999998 888999999                78899975    


Q ss_pred             --------CCCCCCCCCchHHHHHHHHcCCCCCCcccC-cCC------------------------------CCCc----
Q psy7460         800 --------QCSGCDGCFFEPSIEYTHQAGLESEKDYPY-KNA------------------------------NGEK----  836 (1026)
Q Consensus       800 --------~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY-~~~------------------------------~~~~----  836 (1026)
                              .+.||+||.+..+++|++++||++|++||| ...                              ....    
T Consensus       132 ~r~v~~l~~~~gcdGG~~~~a~~~i~kyGivpe~~yP~~s~~s~ns~~~n~~L~~kLr~~a~~lR~~~~~~~~~~~~l~~  211 (457)
T 2e01_A          132 SRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVT  211 (457)
T ss_dssp             SHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCSCSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred             chhhhhhccCCCCCCCCHHHHHHHHHHcCccchhhcCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHH
Confidence                    378999999999999999999999999999 321                              0000    


Q ss_pred             -----------------ccccCC---C-------------------------------C------------cceEEec--
Q psy7460         837 -----------------FKCAYD---K-------------------------------S------------KVKLFTG--  851 (1026)
Q Consensus       837 -----------------~~C~~~---~-------------------------------~------------~~~~~~~--  851 (1026)
                                       ..|+..   .                               .            ..+.+.+  
T Consensus       212 ~~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~~~~~~~~TP~~F~~~~v~~~~~dyV~l~n~p~~py~~~y~ve~  291 (457)
T 2e01_A          212 LREQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKIDR  291 (457)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTTCCCTTSEEEEECCTTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCCCCccCCCcChHHHHHHHcCCCchheEEEeecCCCccCeeEEEec
Confidence                             001110   0                               0            0000000  


Q ss_pred             ---------ceeeecC-h--HHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCC-----------------CCCCCCC
Q psy7460         852 ---------KDFLHFN-G--SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE-----------------TCSPYDL  902 (1026)
Q Consensus       852 ---------~~~~~~~-~--~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~-----------------~c~~~~~  902 (1026)
                               ..|..++ +  .+.++++|.++|||+++++++.+++|++||+.....                 .|.....
T Consensus       292 ~~N~~~g~~~~y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~~~~~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~s~~  371 (457)
T 2e01_A          292 LGNVLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLM  371 (457)
T ss_dssp             CCSSTTCCCEEEEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCC
T ss_pred             cCCeecCCceeEEEcCHHHHHHHHHHHHHhCCCEEEEEEcCHhHcccCceecccccchhhcCcccccCHHHhhccCCCCC
Confidence                     0122232 1  256677899999999999998888999999965410                 0133468


Q ss_pred             CeEEEEEEeeec-CCc--cEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEe
Q psy7460         903 GHAVLLVGYGKQ-DNI--PYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  957 (1026)
Q Consensus       903 ~HaV~iVGyg~~-~g~--~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~  957 (1026)
                      +|||+|||||.+ +|+  +|||||||||+.||++|||+|+|+    .++.....++++
T Consensus       372 ~HAmlivGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~----wf~ey~~~ivV~  425 (457)
T 2e01_A          372 TAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK----YFEEYCFQIVVD  425 (457)
T ss_dssp             CEEEEEEEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHH----HHHHHEEEEEEE
T ss_pred             CeEEEEEEEEeccCCCccCEEEEEeCccCCcCCCceEEeehh----hHhhccEEEEec
Confidence            999999999986 788  899999999999999999999996    455555555544

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.97  E-value=3.8e-30  Score=288.14  Aligned_cols=187  Identities=16%  Similarity=0.166  Sum_probs=135.6

Q ss_pred             CCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC------------CCCCCCCCCCc-hHHHHHHh
Q psy7460         387 VTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ------------CSGCGGCDGLE-QPIEYTHQ  453 (1026)
Q Consensus       387 ~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~------------~~gC~G~~G~~-~a~~~~~~  453 (1026)
                      .+|||||||.||||||||+++++|+++.++++++++||+|+|+||+..            +.||+|  |.+ .|++|+++
T Consensus        21 ~vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdG--G~~~~a~~~i~k   98 (383)
T 3pw3_A           21 PITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQG--GSFYDALYGMET   98 (383)
T ss_dssp             CCCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSC--CCHHHHHHHHHH
T ss_pred             CCCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCC--CCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999852            479999  999 99999999


Q ss_pred             CCcCCCCCCc------ccCCCC--------------------C-------cc---------------c------------
Q psy7460         454 AGLESEKDYP------YRNGNG--------------------E-------KF---------------K------------  473 (1026)
Q Consensus       454 ~Gi~~e~~yp------Y~~~~~--------------------~-------~~---------------~------------  473 (1026)
                      +||++|++||      +...+.                    .       ..               .            
T Consensus        99 ~Givpe~~YP~~~~~~~~s~n~~~m~~~L~~~Lr~~a~~~~r~l~~~~~~~~~~~~~i~~il~~~LG~pP~~F~~~gk~~  178 (383)
T 3pw3_A           99 FGLVPEEEMRPGMMYADTLSNHTELSALTDAMVAAIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFTYKGKEY  178 (383)
T ss_dssp             TCCCBGGGSCTTGGGTCSSCBCHHHHHHHHHHHHHHHSSCCSSCCBCTTCCBHHHHHHHHHHHHHHCCCCSSEEETTEEE
T ss_pred             cCcCcHHhCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceEEecCCCc
Confidence            9999999999      211100                    0       00               0            


Q ss_pred             ----------ccc--------CCC--Cceeeec--------ceeEecCCHHH----HHHHHHcCCCEEEEEecCcccccc
Q psy7460         474 ----------CAY--------DKS--KVKLFTG--------KDFLYFNGSET----MKKILYKYGPLSVGLNSHLIHFYN  521 (1026)
Q Consensus       474 ----------C~~--------~~~--~~~~~~~--------~~~~~~~~~~~----~~~~l~~~gPv~v~i~~~~~~~y~  521 (1026)
                                +..        ++.  -.+.+.+        ..|..+ ..+.    +.++|.++-||..+-+++...+-+
T Consensus       179 TP~~F~~~v~~~~~dyV~l~n~p~~py~~~y~ve~~~N~~~g~~~Nv-p~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~~  257 (383)
T 3pw3_A          179 TPKSFFESTGLKASDYVSLTSYTHHPFYTQFPLEIQDNWRHGMSYNL-PLDEFMEVFDNAINTGYTIAWGSDVSESGFTR  257 (383)
T ss_dssp             CHHHHHHHHTCCGGGEEEEECCSSSCTTCEEECCCTTCTTCCEEEEC-CHHHHHHHHHHHHHTTCCEEEEEECCSTTBCT
T ss_pred             CHHHHHHHhCCCccceEEEeeCCCCccCceEEEecCCCccCCccCCc-CHHHHHHHHHHHHHcCCcEEEEcccCccccCC
Confidence                      000        000  0000100        001111 2344    445677889999999997544448


Q ss_pred             CCceeCCCC-------------------------------------------CCCCCCCCeEEEEEEeee-cCCccEEEE
Q psy7460         522 GTPIRKNDE-------------------------------------------TCSPYDLGHAVLLVGYGK-QDDIPYWLA  557 (1026)
Q Consensus       522 ~Gi~~~~~~-------------------------------------------~c~~~~~~HaV~iVGyG~-~~g~~YWiv  557 (1026)
                      .||...++.                                           ....+..+|||+|||||. ++|++||||
T Consensus       258 ~Gi~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~~g~~yw~v  337 (383)
T 3pw3_A          258 DGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIYGIAKDQEGNEYYMV  337 (383)
T ss_dssp             TSEECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHHTTSSCCEEEEEEEEEEECTTCCEEEEE
T ss_pred             CceeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCCHHHHHHHhhhccCcCCeEEEEEEEEEcCCCceEEEE
Confidence            898732110                                           001234589999999997 578999999


Q ss_pred             EcCCCCCCCCCcEEEEEec
Q psy7460         558 RNSWGPIGPDEGFFKIERG  576 (1026)
Q Consensus       558 kNSWG~~WGe~Gy~ri~r~  576 (1026)
                      |||||+.||++|||||.+.
T Consensus       338 kNSWg~~~g~~Gy~~m~~~  356 (383)
T 3pw3_A          338 KNSWGTNSKYNGIWYASKA  356 (383)
T ss_dssp             ECSBCSCSTTTTEEEEEHH
T ss_pred             EeCCCCCCCcCCeEEecHH
Confidence            9999999999999999975

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.96  E-value=2.5e-29  Score=281.49  Aligned_cols=190  Identities=18%  Similarity=0.188  Sum_probs=136.4

Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC------------CCCCCCCCCchHHHHHHHHc
Q psy7460         752 NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK------------QCSGCDGCFFEPSIEYTHQA  819 (1026)
Q Consensus       752 g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~------------~~~gC~GG~~~~a~~y~~~~  819 (1026)
                      -.++||||||.||||||||++++||+.+++++++.+.||+|+|+||+.            .+.||+||.+..|++|++++
T Consensus        20 ~~vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~   99 (383)
T 3pw3_A           20 NPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETF   99 (383)
T ss_dssp             CCCCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHT
T ss_pred             cCCCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHc
Confidence            348999999999999999999999999999999999999999999974            15799999999999999999


Q ss_pred             CCCCCCccc------CcCCCCC---------------c--cc---------------------cc-CCCCc----ceE--
Q psy7460         820 GLESEKDYP------YKNANGE---------------K--FK---------------------CA-YDKSK----VKL--  848 (1026)
Q Consensus       820 Gi~~e~~yP------Y~~~~~~---------------~--~~---------------------C~-~~~~~----~~~--  848 (1026)
                      ||++|++||      +...+..               .  ..                     |- ..+..    .+.  
T Consensus       100 Givpe~~YP~~~~~~~~s~n~~~m~~~L~~~Lr~~a~~~~r~l~~~~~~~~~~~~~i~~il~~~LG~pP~~F~~~gk~~T  179 (383)
T 3pw3_A          100 GLVPEEEMRPGMMYADTLSNHTELSALTDAMVAAIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFTYKGKEYT  179 (383)
T ss_dssp             CCCBGGGSCTTGGGTCSSCBCHHHHHHHHHHHHHHHSSCCSSCCBCTTCCBHHHHHHHHHHHHHHCCCCSSEEETTEEEC
T ss_pred             CcCcHHhCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceEEecCCCcC
Confidence            999999999      2111100               0  00                     00 00000    000  


Q ss_pred             ---------Eecceeee----------------------------cCh---HHHHHHHHHhcCCEEEEEeCCCCcccCCc
Q psy7460         849 ---------FTGKDFLH----------------------------FNG---SETMKKILYKYGPLSVLLNSDLIHDYNGT  888 (1026)
Q Consensus       849 ---------~~~~~~~~----------------------------~~~---~~~ik~~l~~~GPV~v~i~~~~f~~y~~G  888 (1026)
                               .....|+.                            ++-   .+.+.++|...-||..+-+++...+-+.|
T Consensus       180 P~~F~~~v~~~~~dyV~l~n~p~~py~~~y~ve~~~N~~~g~~~Nvp~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~~~G  259 (383)
T 3pw3_A          180 PKSFFESTGLKASDYVSLTSYTHHPFYTQFPLEIQDNWRHGMSYNLPLDEFMEVFDNAINTGYTIAWGSDVSESGFTRDG  259 (383)
T ss_dssp             HHHHHHHHTCCGGGEEEEECCSSSCTTCEEECCCTTCTTCCEEEECCHHHHHHHHHHHHHTTCCEEEEEECCSTTBCTTS
T ss_pred             HHHHHHHhCCCccceEEEeeCCCCccCceEEEecCCCccCCccCCcCHHHHHHHHHHHHHcCCcEEEEcccCccccCCCc
Confidence                     00111111                            110   23444567777799999999753333888


Q ss_pred             ceeCCCCC-------------------------------------------CCCCCCCeEEEEEEeee-cCCccEEEEEc
Q psy7460         889 PIRKNDET-------------------------------------------CSPYDLGHAVLLVGYGK-QDNIPYWLVRN  924 (1026)
Q Consensus       889 i~~~~~~~-------------------------------------------c~~~~~~HaV~iVGyg~-~~g~~yWivkN  924 (1026)
                      |...++..                                           ......+|||+|||||. ++|++||||||
T Consensus       260 i~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~~g~~yw~vkN  339 (383)
T 3pw3_A          260 VAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIYGIAKDQEGNEYYMVKN  339 (383)
T ss_dssp             EECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHHTTSSCCEEEEEEEEEEECTTCCEEEEEEC
T ss_pred             eeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCCHHHHHHHhhhccCcCCeEEEEEEEEEcCCCceEEEEEe
Confidence            77432100                                           01234689999999997 57899999999


Q ss_pred             CCCCCCCCCcEEEEEec
Q psy7460         925 SWGPIGPDEGFFKIERG  941 (1026)
Q Consensus       925 SWG~~WGe~Gy~~i~r~  941 (1026)
                      |||+.||++|||+|++.
T Consensus       340 SWg~~~g~~Gy~~m~~~  356 (383)
T 3pw3_A          340 SWGTNSKYNGIWYASKA  356 (383)
T ss_dssp             SBCSCSTTTTEEEEEHH
T ss_pred             CCCCCCCcCCeEEecHH
Confidence            99999999999999984

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=99.29  E-value=3.2e-12  Score=117.46  Aligned_cols=65  Identities=26%  Similarity=0.378  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc--------CCCcccccccCCCCCHHHHh-hhcCCCCC
Q psy7460         285 NENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH--------KKHERYGTSEFSDRSPEEIL-CKTGFKWS  349 (1026)
Q Consensus       285 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~--------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~  349 (1026)
                      +..+..+|++|+++|+|.|.+.+|+..|+.||++|++        ..++++|+|+|||||.|||+ .++|++..
T Consensus        18 ~~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~sy~lglN~FaDLT~eEF~~~~lg~~~~   91 (106)
T 3f75_P           18 EAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLGFKKS   91 (106)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTSCCSEEECCCTTTTCCHHHHHHHSCCBCC-
T ss_pred             cHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcccccCCHHHHHHHHcCCCCC
Confidence            4567889999999999999999999999999999953        45788999999999999999 78887654

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=99.24  E-value=1.1e-11  Score=113.95  Aligned_cols=66  Identities=27%  Similarity=0.415  Sum_probs=56.3

Q ss_pred             ChhhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h---CCCcccccCcCCCCCHHHHH-hhcCCCCC
Q psy7460         650 DNENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H---KKHERYGTSEFSDRSPEEIL-CKTGFKWS  715 (1026)
Q Consensus       650 ~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~---~~~~~~giN~faD~t~eEf~-~~~g~~~~  715 (1026)
                      .++.+...|++|+++|+|.|.+..|+..|+.||++|+     +   +.+++||||+|||||.+||+ .++|.+..
T Consensus        17 ~~~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~sy~lglN~FaDLT~eEF~~~~lg~~~~   91 (106)
T 3f75_P           17 KEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLGFKKS   91 (106)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTSCCSEEECCCTTTTCCHHHHHHHSCCBCC-
T ss_pred             CcHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcccccCCHHHHHHHHcCCCCC
Confidence            3456778999999999999999899999999999996     1   35678899999999999999 67777654

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=99.14  E-value=3.2e-11  Score=105.93  Aligned_cols=59  Identities=20%  Similarity=0.378  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHhhhcCCCC
Q psy7460         289 LETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEILCKTGFKW  348 (1026)
Q Consensus       289 ~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~~~~~~~~  348 (1026)
                      ...|++|+.+|+|.|.+.+|+..| .||++|++            ..++++|+|+|||||.|||..++|++.
T Consensus         7 ~~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf~~~~g~~~   77 (80)
T 2l95_A            7 DEEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSGKKV   77 (80)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHHHHHhCCCC
Confidence            468999999999999988899999 99999952            135789999999999999955666643

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=99.10  E-value=8.4e-11  Score=103.25  Aligned_cols=58  Identities=22%  Similarity=0.444  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----hC-------CCcccccCcCCCCCHHHHHhhcCCCC
Q psy7460         656 ETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----HK-------KHERYGTSEFSDRSPEEILCKTGFKW  714 (1026)
Q Consensus       656 ~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~~-------~~~~~giN~faD~t~eEf~~~~g~~~  714 (1026)
                      ..|++|+.+|+|.|.+..|+..| .||++|+     ++       +++++|+|+|||||.+||..++|.+.
T Consensus         8 ~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf~~~~g~~~   77 (80)
T 2l95_A            8 EEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSGKKV   77 (80)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHHHHHhCCCC
Confidence            57999999999999988899999 9999996     11       34788999999999999955666543

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=96.98  E-value=0.0088  Score=58.55  Aligned_cols=133  Identities=20%  Similarity=0.220  Sum_probs=93.6

Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHH--------HHcCCCcccCHHHHHhhcCCCCCCCCCChHHHHHHHHHcCCCCCCCcC
Q psy7460          26 AGDQADCGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYP   97 (1026)
Q Consensus        26 V~nQg~cGsCwAfA~~~~le~~~~--------i~~~~~~~LS~q~l~~c~~~~~gC~GG~~~~a~~~~~~~Gv~~e~~~P   97 (1026)
                      -..||.-+-|-+|+.+++|-....        |++.-...+|.++|.+        .|..+...++|++..|...     
T Consensus        24 ~ETQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~~yPN~s~~~l~~--------t~~~~~q~Iky~~s~G~~~-----   90 (183)
T 1pxv_A           24 REQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPN--------CATFPNQMIEYGKSQGRDI-----   90 (183)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGG--------CCBCHHHHHHHHHHTTCCC-----
T ss_pred             eeccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhh--------cCCCHHHHHHHHHHcCcCh-----
Confidence            357999999999999888876552        2222235566666655        4788999999999776421     


Q ss_pred             CCCCCCCcccCCCCcccceeeccceeeecCcHHHHHHHHHhcCCcEEEEecccccccCCceeecCCCCCCCCCCCcEEEE
Q psy7460          98 YKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL  177 (1026)
Q Consensus        98 Y~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~~~~~~~~HAV~I  177 (1026)
                                             .......+.+.+|++|.++-||.+....-.             ........+||++|
T Consensus        91 -----------------------~~~nr~ls~neV~~~i~~Nk~I~v~~~~v~-------------e~~~~~~~gHA~av  134 (183)
T 1pxv_A           91 -----------------------HYQEGVPSYNQVDQLTKDNVGIMILAQSVS-------------QNPNDPHLGHALAV  134 (183)
T ss_dssp             -----------------------EEEESCCCHHHHHHHHHTTCCEEEEEECCC-------------SSTTSCCCEEEEEE
T ss_pred             -----------------------hHhcCCCCHHHHHHHHhcCCcEEEEccccc-------------cCCCCccCceeEEE
Confidence                                   111123466899999999999887665310             01122357999999


Q ss_pred             EEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCC
Q psy7460         178 VGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNN  212 (1026)
Q Consensus       178 VGyG~~~g~~yWIVrNSWG~~WG~~Gyf~i~~g~n  212 (1026)
                      |||-.-++.++.+|-|-|     ++|++-+.-..+
T Consensus       135 ~Gya~~~~~~~y~~WNPW-----~~~~~~~~a~S~  164 (183)
T 1pxv_A          135 VGNAKINDQEKLIYWNPW-----DTELSIQDADSS  164 (183)
T ss_dssp             EEEEEETTEEEEEEECTT-----CSSCEEEETTCC
T ss_pred             EeeeecCCCeEEEEeCCc-----cCCcEeecCCCC
Confidence            999988899999999999     447777775544

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=96.73  E-value=0.013  Score=63.39  Aligned_cols=131  Identities=21%  Similarity=0.231  Sum_probs=91.0

Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHH--------HHcCCCcccCHHHHHhhcCCCCCCCCCChHHHHHHHHHcCCCCCCCcC
Q psy7460          26 AGDQADCGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYP   97 (1026)
Q Consensus        26 V~nQg~cGsCwAfA~~~~le~~~~--------i~~~~~~~LS~q~l~~c~~~~~gC~GG~~~~a~~~~~~~Gv~~e~~~P   97 (1026)
                      -..||.-+-|-+||.+++|-....        |++.-...+|.++|.+        .|..+...++|++.+|.-      
T Consensus       200 ~ETQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~~yPN~S~~~l~~--------ts~~~~q~Iky~qsyG~~------  265 (367)
T 1x9y_A          200 REQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPN--------CATFPNQMIEYGKSQGRD------  265 (367)
T ss_dssp             CCCCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHHHCTTSCTTTGGG--------CCCCHHHHHHHHHHTTEE------
T ss_pred             eeccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhh--------cCCCHHHHHHHHHHhCcc------
Confidence            367999999999999888775541        2222235566666655        478899999999976642      


Q ss_pred             CCCCCCCcccCCCCcccceeeccceeeecCcHHHHHHHHHhcCCcEEEEecccccccCCceeecCCCCCCCCCCCcEEEE
Q psy7460          98 YKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL  177 (1026)
Q Consensus        98 Y~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~~~~~~~~HAV~I  177 (1026)
                                            ........+.+.++++|.++-||.+.+..-.-             .......+|||+|
T Consensus       266 ----------------------~~~~n~~ls~deVk~~id~Nk~I~v~~~~v~~-------------~~n~~~~gHAlav  310 (367)
T 1x9y_A          266 ----------------------IHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQ-------------NPNDPHLGHALAV  310 (367)
T ss_dssp             ----------------------EEEEESCCCHHHHHHHHHTTCCEEEEEEETTS-------------CSSSCCCSEEEEE
T ss_pred             ----------------------hhhhcCCCCHHHHHHHHhcCCcEEEEcccccc-------------CCCCccCceeEEE
Confidence                                  11222234668899999999999887764110             0122257999999


Q ss_pred             EEeeecCCccEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         178 VGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG  210 (1026)
Q Consensus       178 VGyG~~~g~~yWIVrNSWG~~WG~~Gyf~i~~g  210 (1026)
                      |||-..++.+|.++-|-|     +++++-+.-.
T Consensus       311 vGyA~~~~~~~y~~WNPW-----~~~~~~~sa~  338 (367)
T 1x9y_A          311 VGNAKINDQEKLIYWNPW-----DTELSIQDAD  338 (367)
T ss_dssp             EEEEEETTEEEEEEECTT-----CSSCEEEETT
T ss_pred             EeccccCCCcEEEEecCc-----cCCceeecCC
Confidence            999877788999999998     3446666553

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=96.66  E-value=0.026  Score=55.21  Aligned_cols=130  Identities=17%  Similarity=0.284  Sum_probs=91.7

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHH--------HHcCCCcccCHHHHHhhcCCCCCCCCCChHHHHHHHHHcCCCCCCCcCC
Q psy7460          27 GDQADCGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPY   98 (1026)
Q Consensus        27 ~nQg~cGsCwAfA~~~~le~~~~--------i~~~~~~~LS~q~l~~c~~~~~gC~GG~~~~a~~~~~~~Gv~~e~~~PY   98 (1026)
                      ..||.-+-|-+|+.+++|-....        +++.-...+|.++|..        .|..+...++|+++.|...      
T Consensus        16 ETQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~--------~~~t~~e~iky~~s~g~~~------   81 (174)
T 1cv8_A           16 ETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQF--------TGLTPREMIYFGQTQGRSP------   81 (174)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHH--------CCCCHHHHHHHHHHTTCCC------
T ss_pred             eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhh--------cCCCHHHHHHHHHHcCCCh------
Confidence            57999999999999988876652        2333347788888883        3678889999999776410      


Q ss_pred             CCCCCCcccCCCCcccceeeccceeeecCcHHHHHHHHHhcCCcEEEEecccccccCCceeecCCCCCCCCCCCcEEEEE
Q psy7460          99 KNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV  178 (1026)
Q Consensus        99 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~~~~~~~~HAV~IV  178 (1026)
                                            ......-+.+.++++|.++-||.+....-.   ..           .....+||++||
T Consensus        82 ----------------------~~~n~~ls~~eV~~~~~~nk~i~i~~~~ve---~~-----------~~~~~gHAlav~  125 (174)
T 1cv8_A           82 ----------------------QLLNRMTTYNEVDNLTKNNKGIAILGSRVE---SR-----------NGMHAGHAMAVV  125 (174)
T ss_dssp             ----------------------EEESSCCCHHHHHHHHHTTCCEEEEEEESS---CB-----------TTBCCEEEEEEE
T ss_pred             ----------------------hhhcCCCCHHHHHHHHhcCCceEEEccccc---CC-----------CCCCCceeEEEE
Confidence                                  111112356889999999999887665321   11           112469999999


Q ss_pred             Eeee-cCCccEEEEEcCCCCCCCCCcEEEEEecC
Q psy7460         179 GYGK-QDNIPYWLVRNSWGPIGPDEGFFKIERGN  211 (1026)
Q Consensus       179 GyG~-~~g~~yWIVrNSWG~~WG~~Gyf~i~~g~  211 (1026)
                      ||-. .+|.+|.++-|-|     +++.+-+.-..
T Consensus       126 Gy~~~~ng~~~y~~WNPW-----~~~~~~~s~~s  154 (174)
T 1cv8_A          126 GNAKLNNGQEVIIIWNPW-----DNGFMTQDAKN  154 (174)
T ss_dssp             EEEEETTSCEEEEEECTT-----CSSCEEEETTC
T ss_pred             eeeeecCCceEEEEeCCc-----cCCcEEecCCC
Confidence            9987 5788999999999     45566555443

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=95.68  E-value=0.12  Score=50.71  Aligned_cols=129  Identities=21%  Similarity=0.217  Sum_probs=89.2

Q ss_pred             CCCCCCcchHHHHhHHHHHHHHH--------HHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhCCcCCCCCC
Q psy7460         392 GDQAACGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDY  462 (1026)
Q Consensus       392 k~Qg~CgSCwAfa~~~~~e~~~~--------i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~y  462 (1026)
                      ..||.-+=|-+|+.++.|-....        |.+.-...+|+|+|.++.          ..+ ..++|.+..|-..    
T Consensus        25 ETQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~~yPN~s~~~l~~t~----------~~~~q~Iky~~s~G~~~----   90 (183)
T 1pxv_A           25 EQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCA----------TFPNQMIEYGKSQGRDI----   90 (183)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGGCC----------BCHHHHHHHHHHTTCCC----
T ss_pred             eccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhcC----------CCHHHHHHHHHHcCcCh----
Confidence            35888888999999998876552        223334689999998842          344 7889987654311    


Q ss_pred             cccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCCCCCCCCeEEE
Q psy7460         463 PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVL  542 (1026)
Q Consensus       463 pY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~  542 (1026)
                                              .......+.+.+++.|-++-||.|.....         .    +.-+....+||+.
T Consensus        91 ------------------------~~~nr~ls~neV~~~i~~Nk~I~v~~~~v---------~----e~~~~~~~gHA~a  133 (183)
T 1pxv_A           91 ------------------------HYQEGVPSYNQVDQLTKDNVGIMILAQSV---------S----QNPNDPHLGHALA  133 (183)
T ss_dssp             ------------------------EEEESCCCHHHHHHHHHTTCCEEEEEECC---------C----SSTTSCCCEEEEE
T ss_pred             ------------------------hHhcCCCCHHHHHHHHhcCCcEEEEcccc---------c----cCCCCccCceeEE
Confidence                                    01111346789999999999998887631         1    1112235799999


Q ss_pred             EEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         543 LVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG  576 (1026)
Q Consensus       543 iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~  576 (1026)
                      ||||-.-++.+|.++=|-|-.     |++-+.-.
T Consensus       134 v~Gya~~~~~~~y~~WNPW~~-----~~~~~~a~  162 (183)
T 1pxv_A          134 VVGNAKINDQEKLIYWNPWDT-----ELSIQDAD  162 (183)
T ss_dssp             EEEEEEETTEEEEEEECTTCS-----SCEEEETT
T ss_pred             EEeeeecCCCeEEEEeCCccC-----CcEeecCC
Confidence            999998778899999888753     66666544

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=95.41  E-value=0.1  Score=56.49  Aligned_cols=129  Identities=21%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             CCCCCCcchHHHHhHHHHHHHH--------HHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhCCcCCCCCC
Q psy7460         392 GDQAACGSCWAFSIAGMLEGQY--------AIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDY  462 (1026)
Q Consensus       392 k~Qg~CgSCwAfa~~~~~e~~~--------~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~y  462 (1026)
                      ..||.-+=|-+|+.++.|-...        .|.+.-...+|+++|.++        |  ..+ ..++|++..|..     
T Consensus       201 ETQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~~yPN~S~~~l~~t--------s--~~~~q~Iky~qsyG~~-----  265 (367)
T 1x9y_A          201 EQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNC--------A--TFPNQMIEYGKSQGRD-----  265 (367)
T ss_dssp             CCCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHHHCTTSCTTTGGGC--------C--CCHHHHHHHHHHTTEE-----
T ss_pred             eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhc--------C--CCHHHHHHHHHHhCcc-----
Confidence            3588888899999999887654        223333467999999883        1  344 788898765431     


Q ss_pred             cccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCCCCCCCCeEEE
Q psy7460         463 PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVL  542 (1026)
Q Consensus       463 pY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~  542 (1026)
                                             +.......+-+.+++++-++-||.|.+....             ...++...+||++
T Consensus       266 -----------------------~~~~n~~ls~deVk~~id~Nk~I~v~~~~v~-------------~~~n~~~~gHAla  309 (367)
T 1x9y_A          266 -----------------------IHYQEGVPSYNQVDQLTKDNVGIMILAQSVS-------------QNPNDPHLGHALA  309 (367)
T ss_dssp             -----------------------EEEEESCCCHHHHHHHHHTTCCEEEEEEETT-------------SCSSSCCCSEEEE
T ss_pred             -----------------------hhhhcCCCCHHHHHHHHhcCCcEEEEccccc-------------cCCCCccCceeEE
Confidence                                   1111223467889999999999998886410             1112235799999


Q ss_pred             EEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         543 LVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG  576 (1026)
Q Consensus       543 iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~  576 (1026)
                      ||||-..++.+|.++=|-|-.     +++-+.-.
T Consensus       310 vvGyA~~~~~~~y~~WNPW~~-----~~~~~sa~  338 (367)
T 1x9y_A          310 VVGNAKINDQEKLIYWNPWDT-----ELSIQDAD  338 (367)
T ss_dssp             EEEEEEETTEEEEEEECTTCS-----SCEEEETT
T ss_pred             EEeccccCCCcEEEEecCccC-----CceeecCC
Confidence            999987778899999777743     35555443

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=95.14  E-value=0.31  Score=47.73  Aligned_cols=119  Identities=13%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             CCCCCCcchHHHHhHHHHHHHHH--------HHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhCCcCCCCCC
Q psy7460         392 GDQAACGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDY  462 (1026)
Q Consensus       392 k~Qg~CgSCwAfa~~~~~e~~~~--------i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~y  462 (1026)
                      ..||.=+=|-+|+.++.|-....        |.+.-...+|+++|..+.          ..+ ..++|++..|-..    
T Consensus        16 ETQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~~~----------~t~~e~iky~~s~g~~~----   81 (174)
T 1cv8_A           16 ETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTG----------LTPREMIYFGQTQGRSP----   81 (174)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHCC----------CCHHHHHHHHHHTTCCC----
T ss_pred             eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhhcC----------CCHHHHHHHHHHcCCCh----
Confidence            35888888999999998876542        223334689999999542          344 7788887643200    


Q ss_pred             cccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCCCCCCCCeEEE
Q psy7460         463 PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVL  542 (1026)
Q Consensus       463 pY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~  542 (1026)
                                              .-.....+-+++++++.++-||.+..+-..     +         -.+...+||++
T Consensus        82 ------------------------~~~n~~ls~~eV~~~~~~nk~i~i~~~~ve-----~---------~~~~~~gHAla  123 (174)
T 1cv8_A           82 ------------------------QLLNRMTTYNEVDNLTKNNKGIAILGSRVE-----S---------RNGMHAGHAMA  123 (174)
T ss_dssp             ------------------------EEESSCCCHHHHHHHHHTTCCEEEEEEESS-----C---------BTTBCCEEEEE
T ss_pred             ------------------------hhhcCCCCHHHHHHHHhcCCceEEEccccc-----C---------CCCCCCceeEE
Confidence                                    001112367889999999999987776321     1         01135699999


Q ss_pred             EEEeee-cCCccEEEEEcCCC
Q psy7460         543 LVGYGK-QDDIPYWLARNSWG  562 (1026)
Q Consensus       543 iVGyG~-~~g~~YWivkNSWG  562 (1026)
                      ||||-. .+|.+|.++=|-|-
T Consensus       124 v~Gy~~~~ng~~~y~~WNPW~  144 (174)
T 1cv8_A          124 VVGNAKLNNGQEVIIIWNPWD  144 (174)
T ss_dssp             EEEEEEETTSCEEEEEECTTC
T ss_pred             EEeeeeecCCceEEEEeCCcc
Confidence            999997 47889999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1026
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	9e-49
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	1e-48
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	2e-48
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	9e-17
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	4e-47
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	5e-47
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	1e-46
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	3e-14
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	1e-43
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	3e-43
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	6e-34
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	3e-18
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	2e-43
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	2e-43
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	3e-43
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	2e-15
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	6e-43
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	7e-42
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	9e-42
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	3e-14
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	7e-43
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	9e-43
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	6e-35
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	2e-17
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	2e-42
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	3e-42
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	3e-42
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	2e-15
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-41
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-41
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	5e-40
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-11
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	3e-40
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	4e-40
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	8e-39
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	1e-12
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	7e-40
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	7e-40
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	9e-40
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	4e-15
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	1e-39
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	4e-39
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	6e-39
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	5e-11
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	1e-39
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	2e-39
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	5e-38
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	4e-12
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	4e-39
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	6e-39
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	2e-37
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	2e-10
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	5e-39
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	7e-39
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	1e-38
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	4e-12
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	2e-38
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	2e-38
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	1e-37
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	4e-11
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	6e-38
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	9e-38
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	8e-37
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	2e-37
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	2e-37
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	1e-36
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	7e-11
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	7e-37
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	1e-36
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	2e-35
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	2e-09
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	1e-36
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	1e-36
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	4e-36
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	2e-11
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	4e-35
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	5e-34
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	5e-34
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	7e-13
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	7e-05
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	7e-05
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	1e-04
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	0.001
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	4e-04
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	7e-04
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	7e-04

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (431), Expect = 9e-49
 Identities = 77/216 (35%), Positives = 113/216 (52%), Gaps = 3/216 (1%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K   
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
            C G           +  GLE+E DY Y    G    C +   K K++           +
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSY---QGHMQSCQFSAEKAKVYIQDSVELSQNEQ 118

Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
            +   L K GP+SV +N+  + FY     R     CSP+ + HAVLLVGYG++ D+P+W 
Sbjct: 119 KLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWA 178

Query: 557 ARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 592
            +NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 179 IKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 1e-48
 Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 4/216 (1%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K   
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 72  GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
            C G     +       G LE+E DY Y+        C +   K K++           +
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKVYIQDSVELSQNEQ 118

Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
            +   L K GP+SV +N+  +  Y     R     CSP+ + HAVLLVGYG++ ++P+W 
Sbjct: 119 KLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWA 178

Query: 191 VRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 226
           ++NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 179 IKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (428), Expect = 2e-48
 Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 4/216 (1%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P  WDWR K       DQ  CGSCWAFS+ G +EGQ+ +  G L+  S+ +L++C K   
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 803 GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            C G     +       G LE+E DY Y+        C +   K K++           +
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKVYIQDSVELSQNEQ 118

Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 921
            +   L K GP+SV +N+  +  Y     R     CSP+ + HAVLLVGYG++ ++P+W 
Sbjct: 119 KLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWA 178

Query: 922 VRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID 957
           ++NSWG    ++G++ + RG+ ACG+  +A  A +D
Sbjct: 179 IKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 9e-17
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query: 964  TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYAT 1023
             CSP+ + HAVLLVGYG++ D+P+W ++NSWG    ++G++ + RG+ ACG+  +A  A 
Sbjct: 153  LCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212

Query: 1024 ID 1025
            +D
Sbjct: 213  VD 214

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (418), Expect = 4e-47
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 4/216 (1%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 72  GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
           GC G +   + +Y  +   ++SE  YPY      +        K     G   +     +
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGYREIPEGNEK 119

Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
            +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +W+
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 179

Query: 191 VRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           ++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 180 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (417), Expect = 5e-47
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 4/216 (1%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 803 GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
           GC G +   + +Y  +   ++SE  YPY      +        K     G   +     +
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGYREIPEGNEK 119

Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 921
            +K+ + + GP+SV +++ L      +     DE+C+  +L HAVL VGYG Q    +W+
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 179

Query: 922 VRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           ++NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 180 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (414), Expect = 1e-46
 Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 3/216 (1%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           PD+ D+RKK    P  +Q  CGSCWAFS  G LEGQ   KTGKL+  S   LV+C  +  
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
           GCGG              G++SE  YPY      +        K     G   +     +
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGYREIPEGNEK 119

Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
            +K+ + + GP+SV +++ L  F   +     DE+C+  +L HAVL VGYG Q    +W+
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 179

Query: 557 ARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
            +NSWG    ++G+  + R  NNACGI  +A +  +
Sbjct: 180 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 961  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIA 1019
             DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R  NNACGI  +A
Sbjct: 151  YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA 210

Query: 1020 GYATI 1024
             +  +
Sbjct: 211  SFPKM 215

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score =  158 bits (400), Expect = 1e-43
 Identities = 55/303 (18%), Positives = 98/303 (32%), Gaps = 6/303 (1%)

Query: 655 LETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE-RYGTSEFSDRSPEEILCKTGFK 713
           ++TF+ +     + YA  E+ +   + F +            +  SD S +E   +    
Sbjct: 2   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFLMS 61

Query: 714 WSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAG 773
                + +    +  +         +G  P   D R+     P   Q  CGS WAFS   
Sbjct: 62  AEAFEHLK---TQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVA 118

Query: 774 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNAN 833
             E  Y     + ++ ++ +LV+CA Q            IEY    G+  E  Y Y    
Sbjct: 119 ATESAYLAYRDQSLDLAEQELVDCASQHGCHGDTIPRG-IEYIQHNGVVQESYYRYVARE 177

Query: 834 GEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN 893
               +    +  +  +      + N         +    + + +       +        
Sbjct: 178 QSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYD-GRTII 236

Query: 894 DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 953
                     HAV +VGY     + YW+VRNSW     D G+       +   IE+    
Sbjct: 237 QRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYV 296

Query: 954 ATI 956
             +
Sbjct: 297 VIL 299

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score =  157 bits (398), Expect = 3e-43
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 7/304 (2%)

Query: 289 LETFKAFIVKRGRQYANDEEIKERFEYFKQDGHKKHE-RYGTSEFSDRSPEEILCKTGFK 347
           ++TF+ +     + YA  E+ +   + F +            +  SD S +E   +    
Sbjct: 2   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFLMS 61

Query: 348 WSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAG 407
                + +    +  +         +G  P   D R+     P   Q  CGS WAFS   
Sbjct: 62  AEAFEHLK---TQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVA 118

Query: 408 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 467
             E  Y     + ++ ++ +LV+CA Q    G      + IEY    G+  E  Y Y   
Sbjct: 119 ATESAYLAYRDQSLDLAEQELVDCASQHGCHGDTI--PRGIEYIQHNGVVQESYYRYVAR 176

Query: 468 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRK 527
                +    +  +  +        N         +    + +G+       +       
Sbjct: 177 EQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYD-GRTI 235

Query: 528 NDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAG 587
                      HAV +VGY     + YW+ RNSW     D G+       +   IE+   
Sbjct: 236 IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPY 295

Query: 588 YATI 591
              +
Sbjct: 296 VVIL 299

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score =  130 bits (327), Expect = 6e-34
 Identities = 45/221 (20%), Positives = 72/221 (32%), Gaps = 2/221 (0%)

Query: 5   VEKDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLV 64
              +G  P   D R+     P   Q  CGS WAFS     E  Y     + ++ ++ +LV
Sbjct: 81  CSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELV 140

Query: 65  ECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL 124
           +CA Q            IEY    G+  E  Y Y        +    +  +  +      
Sbjct: 141 DCASQHGCHGDTIPRG-IEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPP 199

Query: 125 HFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 184
           + N         +    + + +       +                  HAV +VGY    
Sbjct: 200 NANKIREALAQTHSAIAVIIGIKDLDAFRHYD-GRTIIQRDNGYQPNYHAVNIVGYSNAQ 258

Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
            + YW+VRNSW     D G+       +   IE+      +
Sbjct: 259 GVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 299

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 84.3 bits (207), Expect = 3e-18
 Identities = 21/133 (15%), Positives = 34/133 (25%), Gaps = 2/133 (1%)

Query: 894  DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGY 953
             E+   Y            ++  I  +            E   +           +    
Sbjct: 167  QESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDA 226

Query: 954  A--TIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 1011
                                HAV +VGY     + YW+VRNSW     D G+       +
Sbjct: 227  FRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID 286

Query: 1012 ACGIEQIAGYATI 1024
               IE+      +
Sbjct: 287  LMMIEEYPYVVIL 299

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  155 bits (391), Expect = 2e-43
 Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 7/217 (3%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 72  GCDGCFFEPSIEYTHQA---GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
           GC G     + E+  Q     + +E  YPY +  G    C      V             
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121

Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
              +   L   GP++V +++     Y G  +      C    L H VLLVGY     +PY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLVGYNDSAAVPY 177

Query: 189 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 225
           W+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  154 bits (390), Expect = 2e-43
 Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 7/217 (3%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K  S
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 803 GCDGCFFEPSIEYTHQA---GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
           GC G     + E+  Q     + +E  YPY +  G    C      V             
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121

Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
              +   L   GP++V +++     Y G  +      C    L H VLLVGY     +PY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLVGYNDSAAVPY 177

Query: 920 WLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 956
           W+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  154 bits (389), Expect = 3e-43
 Identities = 63/217 (29%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--Q 434
           P A DWR +       DQ  CGSCWAFS  G +E Q+ +    L   S+  LV C K   
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 435 CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
               G  +   + I   +   + +E  YPY +G G    C      V             
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121

Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
              +   L   GP++V +++     Y G  +      C    L H VLLVGY     +PY
Sbjct: 122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLVGYNDSAAVPY 177

Query: 555 WLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 591
           W+ +NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 73.9 bits (180), Expect = 2e-15
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI 1024
            C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G+N C +++ A  A +
Sbjct: 155  CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (387), Expect = 6e-43
 Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 7/219 (3%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+ +  
Sbjct: 2   PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61

Query: 437 GCGGCDGLEQP---IEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN 493
           G  GC+G              G++S+  YPY+  +  +      K +    +    L + 
Sbjct: 62  GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD--QKCQYDSKYRAATCSKYTELPYG 119

Query: 494 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 553
             + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +   
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKE 178

Query: 554 YWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
           YWL +NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 7e-42
 Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 8/219 (3%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA---K 68
           PD+ DWR+K        Q  CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+    
Sbjct: 2   PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61

Query: 69  QCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G F   + +Y     G++S+  YPYK  +  +      K +    +    L + 
Sbjct: 62  GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD--QKCQYDSKYRAATCSKYTELPYG 119

Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 187
             + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +   
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKE 178

Query: 188 YWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (378), Expect = 9e-42
 Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA---K 799
           PD+ DWR+K        Q +CG+CWAFS  G LE Q  +KTGKLV  S   LV+C+    
Sbjct: 2   PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY 61

Query: 800 QCSGCDGCFFEPSIEYTHQ-AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 858
              GC+G F   + +Y     G++S+  YPYK  +  +      K +    +    L + 
Sbjct: 62  GNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD--QKCQYDSKYRAATCSKYTELPYG 119

Query: 859 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIP 918
             + +K+ +   GP+SV +++     +        + +C+  ++ H VL+VGYG  +   
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKE 178

Query: 919 YWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           YWLV+NSWG    +EG+ ++ R   N CGI     Y  I
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 963  ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGY 1021
            E     ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++ R   N CGI     Y
Sbjct: 155  EPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214

Query: 1022 ATI 1024
              I
Sbjct: 215  PEI 217

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (396), Expect = 7e-43
 Identities = 90/331 (27%), Positives = 133/331 (40%), Gaps = 34/331 (10%)

Query: 280 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----------DGHKKHE-RY 327
           SLTFD  ++   +  +     R Y  +EE   R   +++               KH    
Sbjct: 1   SLTFD-HSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTM 58

Query: 328 GTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNV 387
             + F D + EE         + +  +  V       +           P + DWR+K  
Sbjct: 59  AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE----------APRSVDWREKGY 108

Query: 388 TGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS--GCGGCDGLE 445
             P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+      GC G     
Sbjct: 109 VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 168

Query: 446 QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKY 505
                    GL+SE+ YPY      +  C Y+                  + + K +   
Sbjct: 169 AFQYVQDNGGLDSEESYPY---EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATV 225

Query: 506 GPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLARNSW 561
           GP+SV +++    F         +  CS  D+ H VL+VGYG    + D+  YWL +NSW
Sbjct: 226 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 285

Query: 562 GPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
           G      G+ K+ +   N CGI   A Y T+
Sbjct: 286 GEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 9e-43
 Identities = 92/331 (27%), Positives = 138/331 (41%), Gaps = 35/331 (10%)

Query: 646 SLTFDNENILETFKAFIVKRGRQYANDEEIKERFEYFKQ-----------DGHKKHE-RY 693
           SLTFD  ++   +  +     R Y  +EE   R   +++               KH    
Sbjct: 1   SLTFD-HSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTM 58

Query: 694 GTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNV 753
             + F D + EE         + +  +  V       +           P + DWR+K  
Sbjct: 59  AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYE----------APRSVDWREKGY 108

Query: 754 TGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS--GCDGCFFEP 811
             P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+      GC+G   + 
Sbjct: 109 VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 168

Query: 812 SIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKY 870
           + +Y    G L+SE+ YPY      +  C Y+                  + + K +   
Sbjct: 169 AFQYVQDNGGLDSEESYPY---EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATV 225

Query: 871 GPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDNIPYWLVRNSW 926
           GP+SV +++              +  CS  D+ H VL+VGYG    + DN  YWLV+NSW
Sbjct: 226 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 285

Query: 927 GPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           G      G+ K+ +   N CGI   A Y T+
Sbjct: 286 GEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 6e-35
 Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
            P + DWR+K    P  +Q  CGSCWAFS  G LEGQ   KTG+L+  S+  LV+C+   
Sbjct: 97  APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 156

Query: 71  S--GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN 127
              GC+G   + + +Y    G L+SE+ YPY      +  C Y+                
Sbjct: 157 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY---EATEESCKYNPKYSVANDAGFVDIPK 213

Query: 128 GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 183
             + + K +   GP+SV +++              +  CS  D+ H VL+VGYG    + 
Sbjct: 214 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 273

Query: 184 DNIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           DN  YWLV+NSWG      G+ K+ +   N CGI   A Y T+
Sbjct: 274 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 2e-17
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 959  VKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNAC 1013
            +  +  CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ +   N C
Sbjct: 246  IYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 305

Query: 1014 GIEQIAGYATI 1024
            GI   A Y T+
Sbjct: 306  GIASAASYPTV 316

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score =  150 bits (378), Expect = 1e-41
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 8/217 (3%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           PD+ DWR+     P  +Q  CGSCWAFS    +EG   I TG L+  S+ QLV+C     
Sbjct: 2   PDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANH 61

Query: 72  GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET 131
           GC G +  P+ ++    G  + ++               +   V + + ++    N  E 
Sbjct: 62  GCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHN--EQ 119

Query: 132 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLV 191
             +      P+SV +++                        HA+ +VGYG +++  +W+V
Sbjct: 120 SLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--SCNISANHALTVVGYGTENDKDFWIV 177

Query: 192 RNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 224
           +NSWG    + G+ + ER     +  CGI + A Y  
Sbjct: 178 KNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 214

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score =  149 bits (377), Expect = 1e-41
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 8/217 (3%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           PD+ DWR+     P  +Q  CGSCWAFS    +EG   I TG L+  S+ QLV+C     
Sbjct: 2   PDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANH 61

Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET 862
           GC G +  P+ ++    G  + ++               +   V + + ++    N  E 
Sbjct: 62  GCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHN--EQ 119

Query: 863 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLV 922
             +      P+SV +++                        HA+ +VGYG +++  +W+V
Sbjct: 120 SLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--SCNISANHALTVVGYGTENDKDFWIV 177

Query: 923 RNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 955
           +NSWG    + G+ + ER     +  CGI + A Y  
Sbjct: 178 KNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 214

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score =  145 bits (366), Expect = 5e-40
 Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           PD+ DWR+     P  +Q  CGSCWAFS    +EG   I TG L+  S+ QLV+C     
Sbjct: 2   PDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANH 61

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
           GC G           +  G+ SE+ YPYR   G+   C    +   +         + +E
Sbjct: 62  GCRGGWMNPAFQFIVNNGGINSEETYPYR---GQDGICNSTVNAPVVSIDSYENVPSHNE 118

Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
              +      P+SV +++    F                   HA+ +VGYG ++D  +W+
Sbjct: 119 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--SCNISANHALTVVGYGTENDKDFWI 176

Query: 557 ARNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 590
            +NSWG    + G+ + ER     +  CGI + A Y  
Sbjct: 177 VKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 214

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAG 1020
                   HA+ +VGYG ++D  +W+V+NSWG    + G+ + ER     +  CGI + A 
Sbjct: 152  SCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFAS 211

Query: 1021 YAT 1023
            Y  
Sbjct: 212  YPV 214

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  145 bits (367), Expect = 3e-40
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 8/215 (3%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P + DWR K    P  +Q  CGSCWAFS    +EG   I TG L+E S+ +LV+C K   
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 72  GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET 131
           GC G +   S++Y    G+ + K YPY+    +              TG   +  N   +
Sbjct: 62  GCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRAT-DKPGPKVKITGYKRVPSNCETS 120

Query: 132 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLV 191
               L       ++           + +           L HAV  VGYG  D   Y ++
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSGVFDG---PCGTKLDHAVTAVGYGTSDGKNYIII 177

Query: 192 RNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 222
           +NSWGP   ++G+ +++R        CG+ + + Y
Sbjct: 178 KNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  145 bits (366), Expect = 4e-40
 Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 8/215 (3%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P + DWR K    P  +Q ACGSCWAFS    +EG   I TG L+E S+ +LV+C K   
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET 862
           GC G +   S++Y    G+ + K YPY+    +              TG   +  N   +
Sbjct: 62  GCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRAT-DKPGPKVKITGYKRVPSNCETS 120

Query: 863 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLV 922
               L       ++           + +           L HAV  VGYG  D   Y ++
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSGVFDG---PCGTKLDHAVTAVGYGTSDGKNYIII 177

Query: 923 RNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 953
           +NSWGP   ++G+ +++R        CG+ + + Y
Sbjct: 178 KNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  142 bits (357), Expect = 8e-39
 Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 9/216 (4%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P + DWR K    P  +Q ACGSCWAFS    +EG   I TG L+E S+ +LV+C K   
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
           GC         ++Y    G+ + K YPY+    +         KVK+   K     +  E
Sbjct: 62  GC-KGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKR--VPSNCE 118

Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
           T         PLSV + +    F          +      L HAV  VGYG  D   Y +
Sbjct: 119 TSFLGALANQPLSVLVEAGGKPFQL--YKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYII 176

Query: 557 ARNSWGPIGPDEGFFKIERG----NNACGIEQIAGY 588
            +NSWGP   ++G+ +++R        CG+ + + Y
Sbjct: 177 IKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 65.8 bits (159), Expect = 1e-12
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAG 1020
                 L HAV  VGYG  D   Y +++NSWGP   ++G+ +++R        CG+ + + 
Sbjct: 152  PCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSY 211

Query: 1021 Y 1021
            Y
Sbjct: 212  Y 212

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score =  145 bits (365), Expect = 1e-39
 Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 21/235 (8%)

Query: 372 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 431
           ++     A+DWR  +   P  DQ  CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C
Sbjct: 14  EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73

Query: 432 AKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLY 491
           + +  GC G        +     G+  + DYPY +             K  +        
Sbjct: 74  SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPD 133

Query: 492 FNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---- 547
                 +K+ L   GP+S+ +       +    I           L HAV+LVG+G    
Sbjct: 134 ----NKLKEALRFLGPISISVAVSDDFAFYKEGIFDG---ECGDQLNHAVMLVGFGMKEI 186

Query: 548 ------KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
                 K +   Y++ +NSWG    + GF  IE   +     CG+   A    I+
Sbjct: 187 VNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score =  143 bits (361), Expect = 4e-39
 Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 22/235 (9%)

Query: 7   KDGPVPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 66
           ++     A+DWR  +   P  DQ +CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C
Sbjct: 14  EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73

Query: 67  AKQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 125
           + +  GC+G     + E      G+  + DYPY +             K  +        
Sbjct: 74  SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPD 133

Query: 126 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 185
                 +K+ L   GP+S+ +       +    I           L HAV+LVG+G ++ 
Sbjct: 134 ----NKLKEALRFLGPISISVAVSDDFAFYKEGIFDG---ECGDQLNHAVMLVGFGMKEI 186

Query: 186 I----------PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
           +           Y++++NSWG    + GF  IE   +     CG+   A    I+
Sbjct: 187 VNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score =  143 bits (360), Expect = 6e-39
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 22/235 (9%)

Query: 738 KDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVEC 797
           ++     A+DWR  +   P  DQ  CGSCWAFS  G +E QYAI+  KL+  S+ +LV+C
Sbjct: 14  EENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC 73

Query: 798 AKQCSGCDGCFFEPSIEYTH-QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH 856
           + +  GC+G     + E      G+  + DYPY +             K  +        
Sbjct: 74  SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPD 133

Query: 857 FNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN 916
                 +K+ L   GP+S+ +       +    I           L HAV+LVG+G ++ 
Sbjct: 134 ----NKLKEALRFLGPISISVAVSDDFAFYKEGIFDG---ECGDQLNHAVMLVGFGMKEI 186

Query: 917 I----------PYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
           +           Y++++NSWG    + GF  IE   +     CG+   A    I+
Sbjct: 187 VNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 61.9 bits (149), Expect = 5e-11
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 965  CSPYDLGHAVLLVGYG----------KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA-- 1012
                 L HAV+LVG+G          K +   Y++++NSWG    + GF  IE   +   
Sbjct: 167  ECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLM 226

Query: 1013 --CGIEQIAGYATID 1025
              CG+   A    I+
Sbjct: 227  RKCGLGTDAFIPLIE 241

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  143 bits (362), Expect = 1e-39
 Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 8/219 (3%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P+  DWRKK    P   Q  CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++  
Sbjct: 2   PENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSH 61

Query: 72  GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET 131
           GC G +   ++EY  + G+     YPYK   G           VK          N    
Sbjct: 62  GCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNL 121

Query: 132 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLV 191
           +  I  +   + V         Y G       E      + HAV  VGYGK     Y L+
Sbjct: 122 LNAIAKQPVSVVVESKGRPFQLYKGGIF----EGPCGTKVDHAVTAVGYGKSGGKGYILI 177

Query: 192 RNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATID 226
           +NSWG    ++G+ +I+R        CG+ + + Y T +
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  143 bits (361), Expect = 2e-39
 Identities = 69/219 (31%), Positives = 98/219 (44%), Gaps = 8/219 (3%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P+  DWRKK    P   Q +CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++  
Sbjct: 2   PENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSH 61

Query: 803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET 862
           GC G +   ++EY  + G+     YPYK   G           VK          N    
Sbjct: 62  GCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNL 121

Query: 863 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLV 922
           +  I  +   + V         Y G       E      + HAV  VGYGK     Y L+
Sbjct: 122 LNAIAKQPVSVVVESKGRPFQLYKGGIF----EGPCGTKVDHAVTAVGYGKSGGKGYILI 177

Query: 923 RNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATID 957
           +NSWG    ++G+ +I+R        CG+ + + Y T +
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  139 bits (351), Expect = 5e-38
 Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 11/221 (4%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P+  DWRKK    P   Q +CGSCWAFS    +EG   I+TGKLVE S+ +LV+C ++ S
Sbjct: 2   PENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDC-ERRS 60

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
                      +EY  + G+     YPY        +       +   +G   +  N   
Sbjct: 61  HGCKGGYPPYALEYVAKNGIHLRSKYPY-KAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119

Query: 497 TMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 555
            +   + K     V  +       Y G       E      + HAV  VGYGK     Y 
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIF----EGPCGTKVDHAVTAVGYGKSGGKGYI 175

Query: 556 LARNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATID 592
           L +NSWG    ++G+ +I+R        CG+ + + Y T +
Sbjct: 176 LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 64.6 bits (156), Expect = 4e-12
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 963  ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQI 1018
            E      + HAV  VGYGK     Y L++NSWG    ++G+ +I+R        CG+ + 
Sbjct: 150  EGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKS 209

Query: 1019 AGYATID 1025
            + Y T +
Sbjct: 210  SYYPTKN 216

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score =  142 bits (359), Expect = 4e-39
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C     
Sbjct: 2   PSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASH 61

Query: 72  GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
           GC+G +   + +Y    G ++++++YPY   +  +  C   + +V    G   +  N   
Sbjct: 62  GCNGGWMNNAFQYIITNGGIDTQQNYPY---SAVQGSCKPYRLRVVSINGFQRVTRNNES 118

Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
            ++  +        +  +     +  + I       +     H V++VGYG Q    YW+
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQN---HGVVIVGYGTQSGKNYWI 175

Query: 191 VRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 224
           VRNSWG    ++G+  +ER        CGI Q+  Y T
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score =  142 bits (357), Expect = 6e-39
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C     
Sbjct: 2   PSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASH 61

Query: 803 GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
           GC+G +   + +Y    G ++++++YPY   +  +  C   + +V    G   +  N   
Sbjct: 62  GCNGGWMNNAFQYIITNGGIDTQQNYPY---SAVQGSCKPYRLRVVSINGFQRVTRNNES 118

Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 921
            ++  +        +  +     +  + I       +     H V++VGYG Q    YW+
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQN---HGVVIVGYGTQSGKNYWI 175

Query: 922 VRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 955
           VRNSWG    ++G+  +ER        CGI Q+  Y T
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score =  137 bits (346), Expect = 2e-37
 Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 10/218 (4%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P   DWR K       +Q  CGSCWAFS    +E    I+TG+L+  S+ +LV+C     
Sbjct: 2   PSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASH 61

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
           GC G              G++++++YPY   +  +  C   + +V    G        +E
Sbjct: 62  GCNGGWMNNAFQYIITNGGIDTQQNYPY---SAVQGSCKPYRLRVVSINGFQR-VTRNNE 117

Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
           +  +      P+SV + +    F + +               H V++VGYG Q    YW+
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTG--PCGTAQNHGVVIVGYGTQSGKNYWI 175

Query: 557 ARNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 590
            RNSWG    ++G+  +ER        CGI Q+  Y T
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAG 1020
                   H V++VGYG Q    YW+VRNSWG    ++G+  +ER        CGI Q+  
Sbjct: 151  PCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPS 210

Query: 1021 YAT 1023
            Y T
Sbjct: 211  YPT 213

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score =  142 bits (358), Expect = 5e-39
 Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 10/219 (4%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P   DWR          Q +CG CWAFS    +EG   I TG L+  S+ +L++C +  +
Sbjct: 2   PSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQN 61

Query: 72  G--CDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
              C+G +     ++    G + +E++YPY   +GE      ++  V + T ++      
Sbjct: 62  TRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYEN--VPYN 119

Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 188
           +E   +    Y P+SV    D   D                 + HAV +VGYG +  I Y
Sbjct: 120 NEWALQTAVTYQPVSV--ALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDY 177

Query: 189 WLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGYAT 224
           W+V+NSW     +EG+ +I R   G   CGI  +  Y  
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score =  142 bits (357), Expect = 7e-39
 Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 10/219 (4%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P   DWR          Q  CG CWAFS    +EG   I TG L+  S+ +L++C +  +
Sbjct: 2   PSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQN 61

Query: 803 G--CDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
              C+G +     ++    G + +E++YPY   +GE      ++  V + T ++      
Sbjct: 62  TRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYEN--VPYN 119

Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPY 919
           +E   +    Y P+SV    D   D                 + HAV +VGYG +  I Y
Sbjct: 120 NEWALQTAVTYQPVSV--ALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDY 177

Query: 920 WLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGYAT 955
           W+V+NSW     +EG+ +I R   G   CGI  +  Y  
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score =  141 bits (355), Expect = 1e-38
 Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 9/219 (4%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P   DWR          Q  CG CWAFS    +EG   I TG L+  S+ +L++C +  +
Sbjct: 2   PSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQN 61

Query: 437 G--CGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNG 494
              C G    +      +  G+ +E++YPY   +GE      ++  V + T ++  Y   
Sbjct: 62  TRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPY--N 119

Query: 495 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 554
           +E   +    Y P+SV L++    F   +             + HAV +VGYG +  I Y
Sbjct: 120 NEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTG--PCGTAIDHAVTIVGYGTEGGIDY 177

Query: 555 WLARNSWGPIGPDEGFFKIER---GNNACGIEQIAGYAT 590
           W+ +NSW     +EG+ +I R   G   CGI  +  Y  
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 64.7 bits (156), Expect = 4e-12
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER---GNNACGIEQIAGY 1021
                 + HAV +VGYG +  I YW+V+NSW     +EG+ +I R   G   CGI  +  Y
Sbjct: 155  PCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

Query: 1022 AT 1023
              
Sbjct: 215  PV 216

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score =  140 bits (353), Expect = 2e-38
 Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 14/216 (6%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P+  DWRKK    P  +Q  CGSCWAFS    +E    I+TG L+  S+ +LV+C K+  
Sbjct: 2   PEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNH 61

Query: 72  GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
           GC G  F  + +Y    G ++++ +YPYK   G    C     KV    G + + F    
Sbjct: 62  GCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAAS-KVVSIDGYNGVPFCNEX 117

Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
            +K+ +        +  S        + I           L H V +VGY       YW+
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSG---PCGTKLNHGVTIVGY----QANYWI 170

Query: 191 VRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 224
           VRNSWG    ++G+ ++ R  G   CGI ++  Y T
Sbjct: 171 VRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score =  140 bits (352), Expect = 2e-38
 Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 14/216 (6%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P+  DWRKK    P  +Q +CGSCWAFS    +E    I+TG L+  S+ +LV+C K+  
Sbjct: 2   PEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNH 61

Query: 803 GCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
           GC G  F  + +Y    G ++++ +YPYK   G    C     KV    G + + F    
Sbjct: 62  GCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAAS-KVVSIDGYNGVPFCNEX 117

Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 921
            +K+ +        +  S        + I           L H V +VGY       YW+
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSG---PCGTKLNHGVTIVGY----QANYWI 170

Query: 922 VRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 955
           VRNSWG    ++G+ ++ R  G   CGI ++  Y T
Sbjct: 171 VRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score =  138 bits (347), Expect = 1e-37
 Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 13/216 (6%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P+  DWRKK    P  +Q +CGSCWAFS    +E    I+TG L+  S+ +LV+C K+  
Sbjct: 2   PEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNH 61

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
           GC G   +       +  G++++ +YPY+   G    C     KV    G + + F    
Sbjct: 62  GCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG---PCQAAS-KVVSIDGYNGVPFCNEX 117

Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWL 556
            +K+ +           S        + I           L H V +VGY       YW+
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSG---PCGTKLNHGVTIVGYQA----NYWI 170

Query: 557 ARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT 590
            RNSWG    ++G+ ++ R  G   CGI ++  Y T
Sbjct: 171 VRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 61.5 bits (148), Expect = 4e-11
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER--GNNACGIEQIAGYA 1022
                 L H V +VGY       YW+VRNSWG    ++G+ ++ R  G   CGI ++  Y 
Sbjct: 150  PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205

Query: 1023 T 1023
            T
Sbjct: 206  T 206

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 6e-38
 Identities = 63/253 (24%), Positives = 95/253 (37%), Gaps = 44/253 (17%)

Query: 12  PDAWDWRKK----NVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLV--EFSKSQLVE 65
           P ++D R++           DQ  CGSCWAF     +  +  I T   V  E S   L+ 
Sbjct: 3   PASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLT 62

Query: 66  CA--KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGEKFKCAY 110
           C       GC+G +   +  +  + GL S   Y                + NG +  C  
Sbjct: 63  CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 122

Query: 111 DK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLI 151
           +                   + K +    +   N  + +   +YK GP+    +  SD +
Sbjct: 123 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFL 182

Query: 152 HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN 211
              +G               GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG 
Sbjct: 183 LYKSGVYQHV----TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 238

Query: 212 NACGIEQIAGYAT 224
           + CGIE       
Sbjct: 239 DHCGIESEVVAGI 251

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (352), Expect = 9e-38
 Identities = 63/253 (24%), Positives = 96/253 (37%), Gaps = 44/253 (17%)

Query: 743 PDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLV--EFSKSQLVE 796
           P ++D R++           DQ +CGSCWAF     +  +  I T   V  E S   L+ 
Sbjct: 3   PASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLT 62

Query: 797 CA--KQCSGCDGCFFEPSIEYTHQAGLESEKDYPYK-------------NANGEKFKCAY 841
           C       GC+G +   +  +  + GL S   Y                + NG +  C  
Sbjct: 63  CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 122

Query: 842 DK-----------------SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLI 882
           +                   + K +    +   N  + +   +YK GP+    +  SD +
Sbjct: 123 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFL 182

Query: 883 HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN 942
              +G               GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG 
Sbjct: 183 LYKSGVYQHV----TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 238

Query: 943 NACGIEQIAGYAT 955
           + CGIE       
Sbjct: 239 DHCGIESEVVAGI 251

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 8e-37
 Identities = 60/251 (23%), Positives = 93/251 (37%), Gaps = 39/251 (15%)

Query: 377 PDAWDWRKK----NVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLV--EFSKSQLVE 430
           P ++D R++           DQ +CGSCWAF     +  +  I T   V  E S   L+ 
Sbjct: 3   PASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLT 62

Query: 431 CAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG-------------NGEKFKCAY 476
           C     G G   G   +   +  + GL S   Y    G             NG +  C  
Sbjct: 63  CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 122

Query: 477 DK-----------------SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHF 519
           +                   + K +    +   N  + +   +YK GP+    + +    
Sbjct: 123 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFL 182

Query: 520 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA 579
              + + ++         GHA+ ++G+G ++  PYWL  NSW     D GFFKI RG + 
Sbjct: 183 LYKSGVYQHV--TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDH 240

Query: 580 CGIEQIAGYAT 590
           CGIE       
Sbjct: 241 CGIESEVVAGI 251

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 2e-37
 Identities = 76/222 (34%), Positives = 106/222 (47%), Gaps = 10/222 (4%)

Query: 12  PDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 71
           P + DWRKK    P  +Q  CGSCWAFS  G LEGQ   KTGKLV  S+  LV+C++   
Sbjct: 2   PKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQG 61

Query: 72  G--CDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
              C+G F   + +Y  + G L+SE+ YPY     ++      ++ V   TG   +    
Sbjct: 62  NQGCNGGFMARAFQYVKENGGLDSEESYPYVAV--DEICKYRPENSVAQDTGFTVVAPGK 119

Query: 129 SETMKKILYKYGPLS--VLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGY--GKQD 184
            + + K +   GP+S  +         Y      + D +    D G  V+  G+     D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179

Query: 185 NIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 225
           N  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 2e-37
 Identities = 76/222 (34%), Positives = 106/222 (47%), Gaps = 10/222 (4%)

Query: 743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 802
           P + DWRKK    P  +Q  CGSCWAFS  G LEGQ   KTGKLV  S+  LV+C++   
Sbjct: 2   PKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQG 61

Query: 803 G--CDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
              C+G F   + +Y  + G L+SE+ YPY     ++      ++ V   TG   +    
Sbjct: 62  NQGCNGGFMARAFQYVKENGGLDSEESYPYVAV--DEICKYRPENSVAQDTGFTVVAPGK 119

Query: 860 SETMKKILYKYGPLS--VLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGY--GKQD 915
            + + K +   GP+S  +         Y      + D +    D G  V+  G+     D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179

Query: 916 NIPYWLVRNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 956
           N  YWLV+NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 1e-36
 Identities = 71/220 (32%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 377 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCS 436
           P + DWRKK    P  +Q  CGSCWAFS  G LEGQ   KTGKLV  S+  LV+C++   
Sbjct: 2   PKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQG 61

Query: 437 GCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE 496
             G   G         +     + +  Y     ++      ++ V   TG   +     +
Sbjct: 62  NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKEK 121

Query: 497 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGY----GKQDDI 552
            + K +   GP+SV +++    F         +  CS  +L H VL+VGY       D+ 
Sbjct: 122 ALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNS 181

Query: 553 PYWLARNSWGPIGPDEGFFKIERG-NNACGIEQIAGYATI 591
            YWL +NSWGP     G+ KI +  NN CGI   A Y  +
Sbjct: 182 KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 7e-11
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 959  VKNDETCSPYDLGHAVLLVGY----GKQDDIPYWLVRNSWGPIGPDEGFFKIERG-NNAC 1013
            +  +  CS  +L H VL+VGY       D+  YWLV+NSWGP     G+ KI +  NN C
Sbjct: 151  IYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHC 210

Query: 1014 GIEQIAGYATI 1024
            GI   A Y  +
Sbjct: 211  GIATAASYPNV 221

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  136 bits (342), Expect = 7e-37
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           +P+  DWR+K    P  +Q  CGSCWAFS    +EG   I+TG L E+S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60

Query: 71  SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 130
            GC+G +   +++   Q G+     YPY+                K    +    +N   
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGA 120

Query: 131 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 190
            +        P+SV+L +                  +  D  HAV  VGYG      Y L
Sbjct: 121 LLY--SIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD--HAVAAVGYGP----NYIL 172

Query: 191 VRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 226
           ++NSWG    + G+ +I+RG       CG+   + Y   +
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  135 bits (340), Expect = 1e-36
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 12/220 (5%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           +P+  DWR+K    P  +Q +CGSCWAFS    +EG   I+TG L E+S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60

Query: 802 SGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE 861
            GC+G +   +++   Q G+     YPY+                K    +    +N   
Sbjct: 61  YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGA 120

Query: 862 TMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWL 921
            +        P+SV+L +                  +  D  HAV  VGYG      Y L
Sbjct: 121 LLY--SIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD--HAVAAVGYGP----NYIL 172

Query: 922 VRNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 957
           ++NSWG    + G+ +I+RG       CG+   + Y   +
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  131 bits (330), Expect = 2e-35
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 13/221 (5%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           +P+  DWR+K    P  +Q +CGSCWAFS    +EG   I+TG L E+S+ +L++C ++ 
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60

Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
            GC         ++   Q G+     YPY                 K    +    +N  
Sbjct: 61  YGC-NGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119

Query: 496 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 555
             +        P+SV L +    F             +  D  HAV  VGYG      Y 
Sbjct: 120 ALLY--SIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD--HAVAAVGYGP----NYI 171

Query: 556 LARNSWGPIGPDEGFFKIERGNNA----CGIEQIAGYATID 592
           L +NSWG    + G+ +I+RG       CG+   + Y   +
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 965  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGIEQIAG 1020
                 + HAV  VGYG      Y L++NSWG    + G+ +I+RG       CG+   + 
Sbjct: 152  PCGNKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF 207

Query: 1021 YATID 1025
            Y   +
Sbjct: 208  YPVKN 212

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  135 bits (341), Expect = 1e-36
 Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 801
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C    
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 802 SG-CDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 859
           +  C+G   + + E+  Q G + +E +YPY+  +G       +   V +   ++    + 
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121

Query: 860 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN-IP 918
           +  +K +  +   +++         Y+              +L H V +VGYG   +   
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG----SCGTELDHGVAIVGYGTTIDGTK 177

Query: 919 YWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATIDVVKN 961
           YW V+NSWGP   ++G+ ++ERG       CGI   A Y       N
Sbjct: 178 YWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNN 224

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  135 bits (341), Expect = 1e-36
 Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 11  VPDAWDWRKKNVTGPAGDQADCGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 70
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C    
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 71  SG-CDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG 128
           +  C+G   + + E+  Q G + +E +YPY+  +G       +   V +   ++    + 
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121

Query: 129 SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDN-IP 187
           +  +K +  +   +++         Y+              +L H V +VGYG   +   
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG----SCGTELDHGVAIVGYGTTIDGTK 177

Query: 188 YWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 224
           YW V+NSWGP   ++G+ ++ERG       CGI   A Y  
Sbjct: 178 YWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  134 bits (337), Expect = 4e-36
 Identities = 59/220 (26%), Positives = 87/220 (39%), Gaps = 8/220 (3%)

Query: 376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC 435
           VP + DWRKK       DQ  CGSCWAFS    +EG   IKT KLV  S+ +LV+C    
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 436 SGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS 495
           +       ++   E+  Q G  + +              + + +      G + +  N  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121

Query: 496 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD-IPY 554
             + K +                 +    +          +L H V +VGYG   D   Y
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG---SCGTELDHGVAIVGYGTTIDGTKY 178

Query: 555 WLARNSWGPIGPDEGFFKIERG----NNACGIEQIAGYAT 590
           W  +NSWGP   ++G+ ++ERG       CGI   A Y  
Sbjct: 179 WTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 62.3 bits (150), Expect = 2e-11
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 965  CSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIA 1019
                +L H V +VGYG   D   YW V+NSWGP   ++G+ ++ERG       CGI   A
Sbjct: 155  SCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEA 214

Query: 1020 GYAT 1023
             Y  
Sbjct: 215  SYPI 218

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 4e-35
 Identities = 53/247 (21%), Positives = 88/247 (35%), Gaps = 28/247 (11%)

Query: 369 EVEKDGPVPDAWDWRKKNVTGPA------GDQAACGSCWAFSIAGMLEGQYAIKTGKL-- 420
           E      +P +WDWR  +    A           CGSCWA +    +  +  IK      
Sbjct: 27  EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 86

Query: 421 -VEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGE--------- 470
               S   +++C    S  GG D       + H    E+  +Y  ++   +         
Sbjct: 87  STLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCN 146

Query: 471 KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDE 530
           +FK  +      L+   D+   +G E M   +Y  GP+S G+ +          I    +
Sbjct: 147 EFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ 206

Query: 531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG--------NNACGI 582
             +  +  H V + G+G  D   YW+ RNSWG    + G+ +I                I
Sbjct: 207 DTTYIN--HVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAI 264

Query: 583 EQIAGYA 589
           E+   + 
Sbjct: 265 EEHCTFG 271

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 5e-34
 Identities = 55/247 (22%), Positives = 84/247 (34%), Gaps = 29/247 (11%)

Query: 735 EVEKDGPVPDAWDWRKKNVTGPA------GDQAACGSCWAFSIAGMLEGQYAIKTGKLVE 788
           E      +P +WDWR  +    A           CGSCWA +    +  +  IK      
Sbjct: 27  EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 86

Query: 789 FSKS--QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE----------- 835
            +    Q V        C+G       +Y HQ G+  E    Y+  + E           
Sbjct: 87  STLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCN 146

Query: 836 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 895
           +FK  +      L+   D+   +G E M   +Y  GP+S  +                 E
Sbjct: 147 EFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGI--MATERLANYTGGIYAE 204

Query: 896 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG--------NNACGI 947
                 + H V + G+G  D   YW+VRNSWG    + G+ +I                I
Sbjct: 205 YQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAI 264

Query: 948 EQIAGYA 954
           E+   + 
Sbjct: 265 EEHCTFG 271

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 5e-34
 Identities = 55/247 (22%), Positives = 84/247 (34%), Gaps = 29/247 (11%)

Query: 4   EVEKDGPVPDAWDWRKKNVTGPA------GDQADCGSCWAFSIAGMLEGQYAIKTGKLVE 57
           E      +P +WDWR  +    A           CGSCWA +    +  +  IK      
Sbjct: 27  EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 86

Query: 58  FSKS--QLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGE----------- 104
            +    Q V        C+G       +Y HQ G+  E    Y+  + E           
Sbjct: 87  STLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCN 146

Query: 105 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE 164
           +FK  +      L+   D+   +G E M   +Y  GP+S  +                 E
Sbjct: 147 EFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGI--MATERLANYTGGIYAE 204

Query: 165 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG--------NNACGI 216
                 + H V + G+G  D   YW+VRNSWG    + G+ +I                I
Sbjct: 205 YQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAI 264

Query: 217 EQIAGYA 223
           E+   + 
Sbjct: 265 EEHCTFG 271

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 7e-13
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 944  ACGIEQIAGYATIDVVKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 1003
            +CGI      A        E      + H V + G+G  D   YW+VRNSWG    + G+
Sbjct: 185  SCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGW 244

Query: 1004 FKIERG--------NNACGIEQIAGYA 1022
             +I                IE+   + 
Sbjct: 245  LRIVTSTYKDGKGARYNLAIEEHCTFG 271

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 173 HAVLLVGYGKQDN---IPYWLVRNSWGPIGPDEGFFKI 207
           HA+L+ G    +       + V NSWG     +G + +
Sbjct: 374 HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 904 HAVLLVGYGKQDN---IPYWLVRNSWGPIGPDEGFFKI 938
           HA+L+ G    +       + V NSWG     +G + +
Sbjct: 374 HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 972  HAVLLVGYGKQDD---IPYWLVRNSWGPIGPDEGFFKI 1006
            HA+L+ G    +       + V NSWG     +G + +
Sbjct: 374  HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 539 HAVLLVGYGKQDD---IPYWLARNSWGPIGPDEGFFKI 573
           HA+L+ G    +       +   NSWG     +G + +
Sbjct: 374 HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 972  HAVLLVGYGKQDD----IPYWLVRNSWGPIGPDEGFF 1004
            HA+      ++DD       W V NSWG     +G+ 
Sbjct: 371  HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 128 GSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKND--ETCSPYDLGHAVLLVGYGKQD 184
           G +  K    K G   + L + +L+   +   + K +         + HA+      ++D
Sbjct: 324 GCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGE-SLMTHAMTFTAVSEKD 382

Query: 185 ----NIPYWLVRNSWGPIGPDEGFF 205
                   W V NSWG     +G+ 
Sbjct: 383 DQDGAFTKWRVENSWGEDHGHKGYL 407

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 859 GSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKND--ETCSPYDLGHAVLLVGYGKQD 915
           G +  K    K G   + L + +L+   +   + K +         + HA+      ++D
Sbjct: 324 GCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGE-SLMTHAMTFTAVSEKD 382

Query: 916 ----NIPYWLVRNSWGPIGPDEGFF 936
                   W V NSWG     +G+ 
Sbjct: 383 DQDGAFTKWRVENSWGEDHGHKGYL 407

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1026
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	100.0
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	100.0
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	100.0
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	100.0
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	100.0
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	100.0
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	100.0
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	100.0
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	100.0
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	100.0
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	100.0
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	100.0
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	100.0
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	100.0
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	100.0
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	100.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	100.0
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	100.0
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	100.0
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	100.0
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	100.0
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.47
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.43
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	99.31
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	99.22
d1pxva_	183	Staphopain SspB {Staphylococcus aureus [TaxId: 128	95.74
d1cv8a_	173	Staphopain StpA {Staphylococcus aureus [TaxId: 128	94.96
d1cv8a_	173	Staphopain StpA {Staphylococcus aureus [TaxId: 128	90.81
d1pxva_	183	Staphopain SspB {Staphylococcus aureus [TaxId: 128	89.79

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-65  Score=568.57  Aligned_cols=286  Identities=31%  Similarity=0.600  Sum_probs=237.0

Q ss_pred             hHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc------------CCCcccccccCCCCCHHHHh-hhcCCCCCccc
Q psy7460         286 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDGH------------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERT  352 (1026)
Q Consensus       286 ~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~------------~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~  352 (1026)
                      +.++.+|++||++|+|.|.+ +|+.+|++||++|++            ..++++|+|+|||||.|||+ .+++.+.....
T Consensus         6 ~~l~~~F~~f~~~~~K~Y~~-~ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~~~   84 (316)
T d1cs8a_           6 HSLEAQWTKWKAMHNRLYGM-NEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR   84 (316)
T ss_dssp             GGGHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCS
T ss_pred             HHHHHHHHHHHHHhCCcCCC-HHHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhccccccccc
Confidence            45678899999999999977 467899999999953            23678899999999999999 55554332211


Q ss_pred             hhhhhhhhHHHHHhhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhh
Q psy7460         353 YERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA  432 (1026)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~  432 (1026)
                      ...           ........+||++||||++|+|+||||||.||||||||+++++|++++|+++.++.||+|+|+||+
T Consensus        85 ~~~-----------~~~~~~~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~  153 (316)
T d1cs8a_          85 KGK-----------VFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS  153 (316)
T ss_dssp             CCE-----------ECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHC
T ss_pred             cCc-----------cccCcccccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhcc
Confidence            110           011133568999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC--CCCCCCCCCCc-hHHHHHHhC-CcCCCCCCcccCCCCCccccccCCCCceeeecceeEe-cCCHHHHHHHHHcCCC
Q psy7460         433 KQ--CSGCGGCDGLE-QPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLY-FNGSETMKKILYKYGP  507 (1026)
Q Consensus       433 ~~--~~gC~G~~G~~-~a~~~~~~~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gP  507 (1026)
                      ..  +.||.|  |.+ .|++|+... +++.|.+|||.+...   .|......... .+..+.. ..+++.|+++|+++||
T Consensus       154 ~~~~~~~c~g--g~~~~a~~y~~~~g~~~~e~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gp  227 (316)
T d1cs8a_         154 GPQGNEGCNG--GLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVA-NDAGFVDIPKQEKALMKAVATVGP  227 (316)
T ss_dssp             GGGTCCGGGC--BCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGGEEE-CCCCEEECCSCHHHHHHHHHHHCC
T ss_pred             ccccCCCCCC--CchHHHHHHHHhcCccccccccccccccc---ccccccccccc-cccccccccCcHHHHHHHHHHhCC
Confidence            64  567777  888 999998665 478899999998777   66655444333 4444444 4589999999999999


Q ss_pred             EEEEEecC--ccccccCCceeCCCCCCCCCCCCeEEEEEEeeec----CCccEEEEEcCCCCCCCCCcEEEEEecC-Ccc
Q psy7460         508 LSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ----DDIPYWLARNSWGPIGPDEGFFKIERGN-NAC  580 (1026)
Q Consensus       508 v~v~i~~~--~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~----~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~c  580 (1026)
                      |+|+|++.  .|++|++|||.  .+.|+...+||||+|||||.+    ++++|||||||||++|||+|||||+|+. |.|
T Consensus       228 v~v~i~~~~~~f~~y~~Gi~~--~~~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n~C  305 (316)
T d1cs8a_         228 ISVAIDAGHESFLFYKEGIYF--EPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC  305 (316)
T ss_dssp             EEEEECCCSHHHHTEEEEEEC--CTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGG
T ss_pred             eEEEEEeccchhccccCCccc--CCCCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCCcC
Confidence            99999984  58999999995  567887788999999999965    6899999999999999999999999985 899


Q ss_pred             cccceeeeeEE
Q psy7460         581 GIEQIAGYATI  591 (1026)
Q Consensus       581 gi~~~~~~~~~  591 (1026)
                      ||++.++||++
T Consensus       306 GI~~~~~yP~v  316 (316)
T d1cs8a_         306 GIASAASYPTV  316 (316)
T ss_dssp             GTTTSCEEECC
T ss_pred             ccCCeeeeeeC
Confidence            99999999974

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-63  Score=556.33  Aligned_cols=287  Identities=31%  Similarity=0.591  Sum_probs=239.1

Q ss_pred             hhHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh-----h-------CCCcccccCcCCCCCHHHHH-hhcCCCCCchh
Q psy7460         652 ENILETFKAFIVKRGRQYANDEEIKERFEYFKQDG-----H-------KKHERYGTSEFSDRSPEEIL-CKTGFKWSERT  718 (1026)
Q Consensus       652 ~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~-----~-------~~~~~~giN~faD~t~eEf~-~~~g~~~~~~~  718 (1026)
                      +.+..+|++||++|+|.|.+. |+.+|+.||++|+     +       +.+++||+|+|||||.|||. .+++.+.....
T Consensus         6 ~~l~~~F~~f~~~~~K~Y~~~-ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~~~   84 (316)
T d1cs8a_           6 HSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR   84 (316)
T ss_dssp             GGGHHHHHHHHHHTTCCCCTT-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCS
T ss_pred             HHHHHHHHHHHHHhCCcCCCH-HHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhccccccccc
Confidence            456678999999999999874 7789999999996     1       23567899999999999999 44433322111


Q ss_pred             hhhhhhhhhhhhhhhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhc
Q psy7460         719 YERIVADREKVEKMLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECA  798 (1026)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~  798 (1026)
                      .           ..........+||++||||++|+|+||||||.||||||||+++++|++++++++..+.||+|+|+||+
T Consensus        85 ~-----------~~~~~~~~~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~  153 (316)
T d1cs8a_          85 K-----------GKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS  153 (316)
T ss_dssp             C-----------CEECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHC
T ss_pred             c-----------CccccCcccccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhcc
Confidence            0           01122234568999999999999999999999999999999999999999999999999999999998


Q ss_pred             C--CCCCCCCCCchHHHHHHHHcC-CCCCCcccCcCCCCCcccccCCCCcceEEecceeee-cChHHHHHHHHHhcCCEE
Q psy7460         799 K--QCSGCDGCFFEPSIEYTHQAG-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH-FNGSETMKKILYKYGPLS  874 (1026)
Q Consensus       799 ~--~~~gC~GG~~~~a~~y~~~~G-i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~-~~~~~~ik~~l~~~GPV~  874 (1026)
                      .  .+.||.||.+..|++|++.+| +++|..|||.+...   .|........ ..+..+.. ..+++.|+++|+.+|||+
T Consensus       154 ~~~~~~~c~gg~~~~a~~y~~~~g~~~~e~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gpv~  229 (316)
T d1cs8a_         154 GPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSV-ANDAGFVDIPKQEKALMKAVATVGPIS  229 (316)
T ss_dssp             GGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGGEE-ECCCCEEECCSCHHHHHHHHHHHCCEE
T ss_pred             ccccCCCCCCCchHHHHHHHHhcCccccccccccccccc---cccccccccc-ccccccccccCcHHHHHHHHHHhCCeE
Confidence            5  467899999999999987765 77888999988777   6665444333 35555543 457899999999999999


Q ss_pred             EEEeCC--CCcccCCcceeCCCCCCCCCCCCeEEEEEEeeec----CCccEEEEEcCCCCCCCCCcEEEEEecC-Ccccc
Q psy7460         875 VLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ----DNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGI  947 (1026)
Q Consensus       875 v~i~~~--~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~----~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi  947 (1026)
                      ++|++.  .|++|.+|||..+  .|+...+||||+|||||.+    ++.+|||||||||++|||+|||||+|+. |.|||
T Consensus       230 v~i~~~~~~f~~y~~Gi~~~~--~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n~CGI  307 (316)
T d1cs8a_         230 VAIDAGHESFLFYKEGIYFEP--DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI  307 (316)
T ss_dssp             EEECCCSHHHHTEEEEEECCT--TCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGT
T ss_pred             EEEEeccchhccccCCcccCC--CCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCCcCcc
Confidence            999984  5999999999876  5877789999999999965    6899999999999999999999999985 89999


Q ss_pred             CCcceEEEE
Q psy7460         948 EQIAGYATI  956 (1026)
Q Consensus       948 ~~~~~~~~~  956 (1026)
                      ++.++||++
T Consensus       308 ~~~~~yP~v  316 (316)
T d1cs8a_         308 ASAASYPTV  316 (316)
T ss_dssp             TTSCEEECC
T ss_pred             CCeeeeeeC
Confidence            999999974

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=100.00  E-value=1.1e-63  Score=554.46  Aligned_cols=287  Identities=22%  Similarity=0.340  Sum_probs=233.5

Q ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHhccc---CCCcccccccCCCCCHHHHh-hhcCCCCCccchhhhhhhhHHHHH
Q psy7460         290 ETFKAFIVKRGRQYANDEEIKERFEYFKQDGH---KKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERIVADREKVEK  365 (1026)
Q Consensus       290 ~~f~~f~~~~~k~Y~~~~E~~~R~~~F~~n~~---~~~~~~g~n~fsD~t~eEf~-~~~~~~~~~~~~~~~~~~~~~~~~  365 (1026)
                      ..|++||++|+|.|.+.+|+..|+.||++|++   +++  .|+|+|+|||.|||+ ++++.........    .......
T Consensus         3 ~~f~~f~~~~~K~Y~~~~e~~~r~~if~~N~~~I~~~n--~~~N~fsDlt~eEf~~~~~~~~~~~~~~~----~~~~~~~   76 (302)
T d1xkga1           3 KTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNG--GAINHLSDLSLDEFKNRFLMSAEAFEHLK----TQFDLNA   76 (302)
T ss_dssp             CSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHC--CCCCTTTTSCHHHHHHHHSBCHHHHHHHH----HHHC---
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhc--cCCCcCCCCCHHHHHHHhcCCCccccccc----ccCCCCc
Confidence            46999999999999999999999999999964   333  389999999999998 5554322111000    0000000


Q ss_pred             hhhcccCCCCCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc
Q psy7460         366 MLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE  445 (1026)
Q Consensus       366 ~~~~~~~~~~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~  445 (1026)
                      .........++|++||||++|+||||||||.||||||||+++++|++++|+++.++.||+|+|+||+. +.||.|  |.+
T Consensus        77 ~~~~~~~~~~~P~~~DwR~~g~vtpVkdQG~CGsCwAfa~~~~lE~~~~i~~~~~~~lS~q~lvdC~~-~~~C~g--G~~  153 (302)
T d1xkga1          77 ETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS-QHGCHG--DTI  153 (302)
T ss_dssp             --CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC-SSTTBC--CCH
T ss_pred             cccccccCCCCCcceeccccCccccceeccccceehhhhhHHhHHHHHHHhcCCcccchhHHHHhccc-cCccCC--Ccc
Confidence            01111234689999999999999999999999999999999999999999999999999999999986 679999  999


Q ss_pred             -hHHHHHHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEec--CCHHHHHHHHHcC-CCEEEEEecC---ccc
Q psy7460         446 -QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF--NGSETMKKILYKY-GPLSVGLNSH---LIH  518 (1026)
Q Consensus       446 -~a~~~~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-gPv~v~i~~~---~~~  518 (1026)
                       .|++|++..||++|++|||.+.+.   .|.......  +.+..|..+  .+++.|+++|+.. +|+++.+.+.   .|+
T Consensus       154 ~~a~~~~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
T d1xkga1         154 PRGIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQR--FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR  228 (302)
T ss_dssp             HHHHHHHHHHCEEBGGGSCCCSSCC---CCCCCSSCE--ECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHH
T ss_pred             chhhhhhccCcccchhhcccccccc---ccccccccc--ceeeeeeeecCchHHHHHHhhhhcccccceeecccccchhh
Confidence             999999999999999999999888   787654432  345566544  4888899988764 5556555542   578


Q ss_pred             cccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         519 FYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       519 ~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                      +|.+||+.  ...|+....+|||+|||||+++|++|||||||||++|||+|||||+||.|.|||++++.+|++.
T Consensus       229 ~y~~gi~~--~~~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~~~~n~cgi~~~~~~~~~~  300 (302)
T d1xkga1         229 HYDGRTII--QRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILG  300 (302)
T ss_dssp             TCCSSSCB--CCCCSSCCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECT
T ss_pred             ccccceee--cCCCCCCcCCEEEEEEEEeccCCeEEEEEEcCCCCchhcCCEEEEECCCCeeccCCCcEEEEec
Confidence            89999885  4567666668999999999999999999999999999999999999999999999999999863

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=100.00  E-value=1.3e-62  Score=546.01  Aligned_cols=288  Identities=22%  Similarity=0.361  Sum_probs=235.0

Q ss_pred             HHHHHHHHHhCCcCCCHHHHHHHHHHHHHhh---hCCCcccccCcCCCCCHHHHH-hhcCCCCCchhhhhhhhhhhhhhh
Q psy7460         656 ETFKAFIVKRGRQYANDEEIKERFEYFKQDG---HKKHERYGTSEFSDRSPEEIL-CKTGFKWSERTYERIVADREKVEK  731 (1026)
Q Consensus       656 ~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~N~---~~~~~~~giN~faD~t~eEf~-~~~g~~~~~~~~~~~~~~~~~~~~  731 (1026)
                      ++|++||++|+|.|.+.+|+.+|+.+|++|+   +.++  .|+|+|||||.|||+ ++++.......    .........
T Consensus         3 ~~f~~f~~~~~K~Y~~~~e~~~r~~if~~N~~~I~~~n--~~~N~fsDlt~eEf~~~~~~~~~~~~~----~~~~~~~~~   76 (302)
T d1xkga1           3 KTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNG--GAINHLSDLSLDEFKNRFLMSAEAFEH----LKTQFDLNA   76 (302)
T ss_dssp             CSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHC--CCCCTTTTSCHHHHHHHHSBCHHHHHH----HHHHHC---
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhc--cCCCcCCCCCHHHHHHHhcCCCccccc----ccccCCCCc
Confidence            3599999999999999999999999999997   3344  499999999999998 44432211100    001111011


Q ss_pred             hhhcccCCCCCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchH
Q psy7460         732 MLMEVEKDGPVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEP  811 (1026)
Q Consensus       732 ~~~~~~~~~~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~  811 (1026)
                      .........++|++||||++|+||||||||.||||||||++++||+++++++++.+.||+|+|+||+. +.||.||.+..
T Consensus        77 ~~~~~~~~~~~P~~~DwR~~g~vtpVkdQG~CGsCwAfa~~~~lE~~~~i~~~~~~~lS~q~lvdC~~-~~~C~gG~~~~  155 (302)
T d1xkga1          77 ETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS-QHGCHGDTIPR  155 (302)
T ss_dssp             --CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC-SSTTBCCCHHH
T ss_pred             cccccccCCCCCcceeccccCccccceeccccceehhhhhHHhHHHHHHHhcCCcccchhHHHHhccc-cCccCCCccch
Confidence            11222345689999999999999999999999999999999999999999999999999999999984 68999999999


Q ss_pred             HHHHHHHcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeec--ChHHHHHHHHHhcC-CEEEEEeC---CCCccc
Q psy7460         812 SIEYTHQAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYG-PLSVLLNS---DLIHDY  885 (1026)
Q Consensus       812 a~~y~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~ik~~l~~~G-PV~v~i~~---~~f~~y  885 (1026)
                      |++|++++||++|++|||...++   .|......  .+.+..|..+  .+++.|+++|+..+ |+++.+..   +.|++|
T Consensus       156 a~~~~~~~Gi~~e~~yPY~~~~~---~C~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y  230 (302)
T d1xkga1         156 GIEYIQHNGVVQESYYRYVAREQ---SCRRPNAQ--RFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHY  230 (302)
T ss_dssp             HHHHHHHHCEEBGGGSCCCSSCC---CCCCCSSC--EECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTC
T ss_pred             hhhhhccCcccchhhcccccccc---cccccccc--cceeeeeeeecCchHHHHHHhhhhcccccceeecccccchhhcc
Confidence            99999999999999999999888   88865443  2355566543  57888999988754 55555544   358889


Q ss_pred             CCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEe
Q psy7460         886 NGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  957 (1026)
Q Consensus       886 ~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~  957 (1026)
                      .+|++..+  .|+....+|||+|||||+++|++|||||||||++|||+|||||+|+.|.|||++.+.+|++.
T Consensus       231 ~~gi~~~~--~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~~~~n~cgi~~~~~~~~~~  300 (302)
T d1xkga1         231 DGRTIIQR--DNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILG  300 (302)
T ss_dssp             CSSSCBCC--CCSSCCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECT
T ss_pred             ccceeecC--CCCCCcCCEEEEEEEEeccCCeEEEEEEcCCCCchhcCCEEEEECCCCeeccCCCcEEEEec
Confidence            99998766  46666778999999999999999999999999999999999999999999999999999875

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-51  Score=431.59  Aligned_cols=212  Identities=37%  Similarity=0.792  Sum_probs=183.7

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      .|++||||++++||||||||.||||||||++++||++++++++..+.||+|+|+||...+.||.|  +.+ .+++|++..
T Consensus         1 ~P~~~D~R~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~~~~~~~~~~S~q~~~~c~~~~~gc~G--~~~~~~~~~~~~~   78 (214)
T d1m6da_           1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMG--GLPSNAYSAIKNL   78 (214)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCceeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHHcCCCcccCHHHhccccccCCccCC--CcchhhHHHHHhC
Confidence            49999999999999999999999999999999999999999999999999999999988889998  888 999998665


Q ss_pred             C-cCCCCCCcccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCCC
Q psy7460         455 G-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCS  533 (1026)
Q Consensus       455 G-i~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c~  533 (1026)
                      | ++.|.+|||.+...   .|.........+....+....+++.||++|+++|||+++|.+..+++|..|++......++
T Consensus        79 g~~~~e~~~py~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~  155 (214)
T d1m6da_          79 GGLETEDDYSYQGHMQ---SCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCS  155 (214)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCCCGGGCCBCCSEEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSC
T ss_pred             CcccccccccccCccC---cccccccccceeeecccccccCHHHHHHHHHhcCCeEEEEEEEehhhccCCccccccCCCC
Confidence            5 89999999998766   4443333222222223333458999999999999999999998777788887754455666


Q ss_pred             CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEEe
Q psy7460         534 PYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  592 (1026)
Q Consensus       534 ~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~~  592 (1026)
                      ...++|||+|||||++++++|||||||||+.|||+|||||+||.|.|||+++++||++|
T Consensus       156 ~~~~~HaV~iVGyg~~~~~~ywivkNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~~  214 (214)
T d1m6da_         156 PWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             TTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEECC
T ss_pred             CcccceeEEEEcccccCCceEEEEECCCCCccccCCEEEEEcCCCcccccceeeEEecC
Confidence            66789999999999999999999999999999999999999999999999999999986

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-49  Score=419.33  Aligned_cols=212  Identities=35%  Similarity=0.742  Sum_probs=182.9

Q ss_pred             CCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcC-C
Q psy7460         743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAG-L  821 (1026)
Q Consensus       743 P~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~G-i  821 (1026)
                      |++||||++++||||||||.||||||||++++||+++.++++..+.||+|+|+||...+.||.|+.+..+++|+++.| +
T Consensus         2 P~~~D~R~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~~~~~~~~~~S~q~~~~c~~~~~gc~G~~~~~~~~~~~~~g~~   81 (214)
T d1m6da_           2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGL   81 (214)
T ss_dssp             CSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHTCB
T ss_pred             CCceeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHHcCCCcccCHHHhccccccCCccCCCcchhhHHHHHhCCcc
Confidence            899999999999999999999999999999999999999999999999999999999889999999999999997765 8


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecChHHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYD  901 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c~~~~  901 (1026)
                      +.|.+|||.+...   .|.........+.........+.+.||++|+++|||+++|.+..+++|..|++......++...
T Consensus        82 ~~e~~~py~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~~~~  158 (214)
T d1m6da_          82 ETEDDYSYQGHMQ---SCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWL  158 (214)
T ss_dssp             CBTTTSCCCSSCC---CCCCCGGGCCBCCSEEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTC
T ss_pred             cccccccccCccC---cccccccccceeeecccccccCHHHHHHHHHhcCCeEEEEEEEehhhccCCccccccCCCCCcc
Confidence            8999999998766   4544333333222222334457899999999999999999987766666666554434566677


Q ss_pred             CCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEEe
Q psy7460         902 LGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATID  957 (1026)
Q Consensus       902 ~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~~  957 (1026)
                      ++|||+|||||++.+++|||||||||+.|||+|||||+|+.|.|||++.++||+++
T Consensus       159 ~~HaV~iVGyg~~~~~~ywivkNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~~  214 (214)
T d1m6da_         159 IDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEECC
T ss_pred             cceeEEEEcccccCCceEEEEECCCCCccccCCEEEEEcCCCcccccceeeEEecC
Confidence            99999999999999999999999999999999999999999999999999999864

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3.3e-49  Score=417.24  Aligned_cols=209  Identities=33%  Similarity=0.651  Sum_probs=178.9

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHH---
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYT---  451 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~---  451 (1026)
                      .|++||||++++||||||||.||||||||++++||++++|+++....||+|+|++|...+.+|.|  +.. .++.++   
T Consensus         1 ~P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~i~~~~~~~ls~q~l~~c~~~~~~~~g--~~~~~~~~~~~~~   78 (215)
T d1me4a_           1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG--GLMNNAFEWIVQE   78 (215)
T ss_dssp             CCSEEEGGGTTCCCCCCBCTTSSCHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCGGGC--CCHHHHHHHHHHH
T ss_pred             CCCCeeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhhcCCCCCCC--Ccccccceeeeec
Confidence            49999999999999999999999999999999999999999999999999999999987778877  555 666664   


Q ss_pred             HhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEec-CCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCC
Q psy7460         452 HQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF-NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDE  530 (1026)
Q Consensus       452 ~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~  530 (1026)
                      ...|++++.+|||...+.....+...... ..+.+..+..+ .+.+.||++|+++|||++++.+..|++|+++++.    
T Consensus        79 ~~~~~~~~~~ypy~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~----  153 (215)
T d1me4a_          79 NNGAVYTEDSYPYASGEGISPPCTTSGHT-VGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----  153 (215)
T ss_dssp             STTEEEBTTTSCCCCTTSCCCCCCCSSCC-EEEECCEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC----
T ss_pred             cCCccccCcccCccccccccccccccccc-cceEeeeeeeccccHHHHHHHHHhcCceeEEEEeeeeccccccccc----
Confidence            23479999999999877632233222222 23355566554 4899999999999999999999889999999983    


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccccceeeeeEE
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI  591 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi~~~~~~~~~  591 (1026)
                      .|....++|||+|||||++++++|||||||||++|||+|||||+||.|+|||+++++||++
T Consensus       154 ~~~~~~~~Hav~IVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  214 (215)
T d1me4a_         154 SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             SCCCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEC
T ss_pred             CCccccceeEEEEEEccccCCceEEEEEcCCCCCcccCCEEEEECCCCccccCCceeeEec
Confidence            3445568999999999999999999999999999999999999999999999999999985

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=4e-49  Score=417.51  Aligned_cols=207  Identities=33%  Similarity=0.631  Sum_probs=176.6

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      .|++||||++++||||||||.||||||||++++||++++++++..+.||+|+|+||...+.||.|  +.+ .++.++++.
T Consensus         1 ~P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~~~g~~g--~~~~~~~~~~~~~   78 (218)
T d1yala_           1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKG--GYQTTSLQYVANN   78 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCCEeCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccchhhhhccccccCCCcc--cccchhhhhhhhh
Confidence            39999999999999999999999999999999999999999999999999999999988888988  788 999999999


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDET  531 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~~  531 (1026)
                      |++.|+++||...+.   .|...........+..+..+. +.+++++++..+|||++++.+.  .|+.|++|||.   ..
T Consensus        79 g~~~e~~~py~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~---~~  152 (218)
T d1yala_          79 GVHTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFD---GP  152 (218)
T ss_dssp             CBCBTTTSCCCSSCC---CCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEEC---CS
T ss_pred             cccccccCCcccccC---ccccccccccceeeccceEeCCccHHHHHHHHHhCCceEEEEecccchhhcccceee---ec
Confidence            999999999998765   333222222223445555554 4555666667899999999984  57889999994   33


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEE
Q psy7460         532 CSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  591 (1026)
Q Consensus       532 c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~  591 (1026)
                      +. ..++|||+|||||++++++|||||||||++|||+|||||+|+.    |.|||++.++||+.
T Consensus       153 ~~-~~~~Hav~IVGyg~~~g~~ywivkNSWG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~~p~~  215 (218)
T d1yala_         153 CG-TKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             CC-SCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             cc-ccCCcEEEEEEeeccCCceEEEEECCCCCCcccCCEEEEEccCCCCCCcCCccceeeeccC
Confidence            33 3579999999999999999999999999999999999999986    67999999999985

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=5.1e-49  Score=416.02  Aligned_cols=206  Identities=34%  Similarity=0.691  Sum_probs=177.2

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++|+||||||||.||||||||+++++|++++|+++..+.||+|+|+||.....+|.|  |.. .++++++..
T Consensus         1 LP~~~Dwr~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~~~~~~~~~~G--~~~~~~~~~~~~~   78 (216)
T d1ppoa_           1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKN   78 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHhCCCCCccHHHHhhhhhccCcccc--ccccccccccccc
Confidence            89999999999999999999999999999999999999999999999999999999988888998  888 999999999


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEec--CCHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~  530 (1026)
                      |+++|++|||.....   .|..............+..+  ..++.|+++|. .|||++++.+.  .|+.|++|++.   .
T Consensus        79 G~~~e~~yPy~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gpv~~~~~~~~~~~~~y~~g~~~---~  151 (216)
T d1ppoa_          79 GIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIFE---G  151 (216)
T ss_dssp             CBCBTTTSCCCSSCC---CCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHHCCSSEEC---C
T ss_pred             CccccccCCcccccc---ccccccccccceeeccceeecccHHHHHHHHHh-hCCCceeeeeccccceecCCcccc---c
Confidence            999999999998776   56654333322233333333  36778888775 69999999984  47889999993   3


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEE
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  591 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~  591 (1026)
                      .+. ..++|||+|||||++++++|||||||||+.|||+|||||+|+.    |.|||++.+.||+.
T Consensus       152 ~~~-~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (216)
T d1ppoa_         152 PCG-TKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             SCC-SCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             ccc-ccCCcEEEEEeccccCCCceEEEECCCCCCcccCCEEEEEcCCCCCCCcCccccEeeeeec
Confidence            333 4579999999999999999999999999999999999999986    56999999999974

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=412.93  Aligned_cols=208  Identities=37%  Similarity=0.763  Sum_probs=180.5

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      .|++||||++++||||||||.||||||||+++++|++++++++..+.||+|+|++|.....+|.|  |.. .|++|++..
T Consensus         1 ~P~~~DwR~~~~vtpV~dQG~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~~~~c~G--~~~~~a~~~~~~~   78 (215)
T d2r6na1           1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQYVQKN   78 (215)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCGGGC--CCHHHHHHHHHHH
T ss_pred             CCCCEeCccCCCCCCCccCccChhHHHHHHHHHHHHHHHHHhCCCccchhhhhhhcccccCccCC--cchhhHHHHHHhc
Confidence            49999999999999999999999999999999999999999999999999999999987788888  888 999998765


Q ss_pred             C-cCCCCCCcccCCCCCccccccCCCCceeeecceeEec--CCHHHHHHHHHcCCCEEEEEec--CccccccCCceeCCC
Q psy7460         455 G-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKND  529 (1026)
Q Consensus       455 G-i~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gPv~v~i~~--~~~~~y~~Gi~~~~~  529 (1026)
                      | +++|..|||.....   .|....... ...+..+...  .+.++||++|.+.|||++.+..  +.|++|++||+.  .
T Consensus        79 g~~~~~~~y~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~--~  152 (215)
T d2r6na1          79 RGIDSEDAYPYVGQEE---SCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY--D  152 (215)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGE-EECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--C
T ss_pred             CccccccCCCcccccc---ccccccccc-ceeecceeeccccHHHHHHHhhcccccEEEEEEeeechhcccCCCccc--C
Confidence            5 89999999987655   344333222 2244455444  4899999999999999998875  368999999995  4


Q ss_pred             CCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CcccccceeeeeEE
Q psy7460         530 ETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  591 (1026)
Q Consensus       530 ~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~~~~~~  591 (1026)
                      ..|+....+|||+|||||++.+++|||||||||++|||+|||||+|+. |.|||++.+.||.+
T Consensus       153 ~~~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WGe~Gy~~i~~~~~n~Cgi~~~~~~p~~  215 (215)
T d2r6na1         153 ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             TTCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEEEC
T ss_pred             CCCCCCCCCeeEEEEEeeccCCCcEEEEEcCCCCCcccCCeEEEEeCCCCcCcccCccccccC
Confidence            567777789999999999999999999999999999999999999996 79999999999974

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-48  Score=410.17  Aligned_cols=207  Identities=36%  Similarity=0.776  Sum_probs=178.6

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC---CCCCCCCCCCc-hHHHH-
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ---CSGCGGCDGLE-QPIEY-  450 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~---~~gC~G~~G~~-~a~~~-  450 (1026)
                      ||++||||++++||||||||.||||||||+++++|++++|+++..+.||+|+|++|...   +.||+|  |.. .|+.+ 
T Consensus         1 LP~~~Dwr~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~i~~~~~~~~S~~~~~~~~~~~~~~~gc~g--g~~~~a~~~~   78 (217)
T d2h7ja1           1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNG--GFMTTAFQYI   78 (217)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCTTBC--CCHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCCccCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHhhhhhcccccCCCCCC--Ccccceeeeh
Confidence            79999999999999999999999999999999999999999999999999999999863   578988  888 77766 


Q ss_pred             HHhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEec--CCHHHHHHHHHcCCCEEEEEecC--ccccccCCcee
Q psy7460         451 THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIR  526 (1026)
Q Consensus       451 ~~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~  526 (1026)
                      ....|++++.+|||...+.   .|..... .....+..+...  ..++.|+++|++.|||++++...  .|+.|++||+.
T Consensus        79 ~~~~g~~~~~~~p~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~  154 (217)
T d2h7ja1          79 IDNKGIDSDASYPYKAMDQ---KCQYDSK-YRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY  154 (217)
T ss_dssp             HHHTCEEBTTTSCCCSSCC---CCCCCGG-GEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBC
T ss_pred             hhcccccccccCCCccccc---ccccccc-cccceeeeeeccCccHHHHHHHHhhcCceEEEEEeeehhhhcccCCccee
Confidence            6789999999999998766   4443322 233455566554  37899999999999999999763  58889999994


Q ss_pred             CCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CcccccceeeeeEE
Q psy7460         527 KNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  591 (1026)
Q Consensus       527 ~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~~~~~~  591 (1026)
                         ..+....++|||+|||||++++++|||||||||+.|||+|||||+|+. |.|||++.+.||++
T Consensus       155 ---~~~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  217 (217)
T d2h7ja1         155 ---EPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  217 (217)
T ss_dssp             ---CTTCCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             ---CCCCCCCCCeEEEEEecccCCCceEEEEEcCCCCCcccCCEEEEecCCCCcCCccccccceeC
Confidence               233345689999999999999999999999999999999999999997 89999999999985

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=100.00  E-value=3.8e-48  Score=409.23  Aligned_cols=207  Identities=31%  Similarity=0.654  Sum_probs=176.4

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||++++||++++++++..+.||+|+|+||.....||.|  |.+ .|++|+...
T Consensus         1 LP~~~DwR~~~~itpV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~gc~G--g~~~~a~~y~~~~   78 (216)
T d1cqda_           1 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRG--GWMNPAFQFIVNN   78 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCccccHHHhhhcccccCCCCC--cchHHHHHHHHhc
Confidence            79999999999999999999999999999999999999999999999999999999988889999  888 999998766


Q ss_pred             C-cCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCC
Q psy7460         455 G-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 G-i~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~  530 (1026)
                      | +..|++|||.+...   .|........ +.+..|.... +.+.+++.|...+|+++++.+.  .|+.|++|||.    
T Consensus        79 g~~~~e~~~p~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~----  150 (216)
T d1cqda_          79 GGINSEETYPYRGQDG---ICNSTVNAPV-VSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFT----  150 (216)
T ss_dssp             TSBCBTTTSCCCSSCC---CCCSSSCCCS-BCCSEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEEC----
T ss_pred             CCccccccCCcccccc---ccccccCCce-eEeeeEEecCCcchhhHHHHhhcCCcceeeeeecccccccccCccc----
Confidence            5 56689999998766   4443333222 2445555544 5566677777889999999873  68899999994    


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                      .+....++|||+|||||++++++|||||||||+.|||+|||||+|+.    |.|||++.++||+.+
T Consensus       151 ~~~~~~~~Hav~iVGyg~~~~~~~wiv~NSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  216 (216)
T d1cqda_         151 GSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK  216 (216)
T ss_dssp             CCCCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             ccccccCCcceeeeccccccCCceEEEECCCCCccccCCEEEEEcCCCCCCCCCCccceeeeeecC
Confidence            23445689999999999999999999999999999999999999985    679999999999863

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=4.4e-48  Score=408.86  Aligned_cols=207  Identities=34%  Similarity=0.682  Sum_probs=179.1

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      ||++||||++|+|+||||||.||||||||++++||++++++++..+.||+|+|+||.....+|.||.+..+++++++.|+
T Consensus         1 LP~~~Dwr~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~~~~~~~~~~G~~~~~~~~~~~~~G~   80 (216)
T d1ppoa_           1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGI   80 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHCB
T ss_pred             CCCcccCCcCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHhCCCCCccHHHHhhhhhccCcccccccccccccccccCc
Confidence            89999999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceee--ecChHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL--HFNGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~--~~~~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c  897 (1026)
                      ++|++|||.....   .|..............+.  ....++.||++|. +|||++++.+.  .|+.|++|+|..+   +
T Consensus        81 ~~e~~yPy~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gpv~~~~~~~~~~~~~y~~g~~~~~---~  153 (216)
T d1ppoa_          81 HLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIFEGP---C  153 (216)
T ss_dssp             CBTTTSCCCSSCC---CCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHHCCSSEECCS---C
T ss_pred             cccccCCcccccc---ccccccccccceeeccceeecccHHHHHHHHHh-hCCCceeeeeccccceecCCcccccc---c
Confidence            9999999998776   565433322222222232  3345788888875 69999999874  4788999999765   3


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEE
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  956 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~  956 (1026)
                      . ..++|||+|||||++++++|||||||||+.|||+|||||+|+.    |.|||++.++||+.
T Consensus       154 ~-~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (216)
T d1ppoa_         154 G-TKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             C-SCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             c-ccCCcEEEEEeccccCCCceEEEECCCCCCcccCCEEEEEcCCCCCCCcCccccEeeeeec
Confidence            2 4689999999999999999999999999999999999999985    46999999999975

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=4e-48  Score=409.78  Aligned_cols=210  Identities=33%  Similarity=0.631  Sum_probs=179.4

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      .|++||||++++|+||||||.||||||||++++||++++++++..+.||+|+|+||...+.||.|+.+..++.|+++.|+
T Consensus         1 ~P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~~~g~~g~~~~~~~~~~~~~g~   80 (218)
T d1yala_           1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGV   80 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHCB
T ss_pred             CCCCEeCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccchhhhhccccccCCCcccccchhhhhhhhhcc
Confidence            49999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCS  898 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c~  898 (1026)
                      ++|+++||...+.   .|...........+..+..+. +.+.+++++..+|||++++.+.  .|+.|++|||..+   +.
T Consensus        81 ~~e~~~py~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~---~~  154 (218)
T d1yala_          81 HTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGP---CG  154 (218)
T ss_dssp             CBTTTSCCCSSCC---CCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCS---CC
T ss_pred             cccccCCcccccC---ccccccccccceeeccceEeCCccHHHHHHHHHhCCceEEEEecccchhhcccceeeec---cc
Confidence            9999999998766   333222222222444555443 3445556666889999999984  4889999999865   33


Q ss_pred             CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEEee
Q psy7460         899 PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATIDV  958 (1026)
Q Consensus       899 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~~~  958 (1026)
                       ..++|||+|||||++++++|||||||||++|||+|||||+|+.    |.|||++.++||+..+
T Consensus       155 -~~~~Hav~IVGyg~~~g~~ywivkNSWG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~~p~~~~  217 (218)
T d1yala_         155 -TKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKGF  217 (218)
T ss_dssp             -SCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEECCC
T ss_pred             -ccCCcEEEEEEeeccCCceEEEEECCCCCCcccCCEEEEEccCCCCCCcCCccceeeeccCCC
Confidence             4579999999999999999999999999999999999999975    5799999999998643

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-48  Score=406.84  Aligned_cols=208  Identities=35%  Similarity=0.733  Sum_probs=182.8

Q ss_pred             CCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcC-C
Q psy7460         743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAG-L  821 (1026)
Q Consensus       743 P~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~G-i  821 (1026)
                      |++||||++|+||||||||.||||||||+++++|++++++++..++||+|+|++|.....+|.|+.+..|++|++..| +
T Consensus         2 P~~~DwR~~~~vtpV~dQG~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~~~~c~G~~~~~a~~~~~~~g~~   81 (215)
T d2r6na1           2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGI   81 (215)
T ss_dssp             CSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHTCE
T ss_pred             CCCEeCccCCCCCCCccCccChhHHHHHHHHHHHHHHHHHhCCCccchhhhhhhcccccCccCCcchhhHHHHHHhcCcc
Confidence            899999999999999999999999999999999999999999999999999999998888999999999999987766 7


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeee--cChHHHHHHHHHhcCCEEEEEeC--CCCcccCCcceeCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH--FNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~--~~~~~~ik~~l~~~GPV~v~i~~--~~f~~y~~Gi~~~~~~~c  897 (1026)
                      ++|..|||.....   .|...+.. ....+..+..  ..+.++||++|+++|||++.+..  +.|+.|++||+...  .|
T Consensus        82 ~~~~~y~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~~--~~  155 (215)
T d2r6na1          82 DSEDAYPYVGQEE---SCMYNPTG-KAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDE--SC  155 (215)
T ss_dssp             EBTTTSCCCSSCC---CCCCCGGG-EEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--TC
T ss_pred             ccccCCCcccccc---cccccccc-cceeecceeeccccHHHHHHHhhcccccEEEEEEeeechhcccCCCcccCC--CC
Confidence            8999999987665   44433322 2234444444  35789999999999999998875  45999999999765  57


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcceEEEE
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  956 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~~~~~  956 (1026)
                      ....++|||+|||||++.+.+|||||||||++|||+|||||+|+. |.|||++.+.||.+
T Consensus       156 ~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WGe~Gy~~i~~~~~n~Cgi~~~~~~p~~  215 (215)
T d2r6na1         156 NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             CTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEEEC
T ss_pred             CCCCCCeeEEEEEeeccCCCcEEEEEcCCCCCcccCCeEEEEeCCCCcCcccCccccccC
Confidence            778899999999999999999999999999999999999999996 79999999999974

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-48  Score=425.93  Aligned_cols=213  Identities=26%  Similarity=0.541  Sum_probs=179.6

Q ss_pred             CCCCCCceeccCCC---CCCCCCCCC---CCcchHHHHhHHHHHHHHHHHcCCC---ccCCHHHHHhhhcCCCCCCCCCC
Q psy7460         373 DGPVPDAWDWRKKN---VTGPAGDQA---ACGSCWAFSIAGMLEGQYAIKTGKL---VEFSKSQLVECAKQCSGCGGCDG  443 (1026)
Q Consensus       373 ~~~lP~~~DwR~~~---~vt~vk~Qg---~CgSCwAfa~~~~~e~~~~i~~~~~---~~lS~q~lvdC~~~~~gC~G~~G  443 (1026)
                      ..+||++||||+++   +++||||||   .||||||||+++++|++++|+++..   ..||+|+|++|.. ..+|.|  |
T Consensus        31 ~~~LP~~~DwR~~~~~~~~tpvkdQG~~~~CGsCWAfAa~~~lE~~~~i~~~~~~~~~~lS~q~l~~~~~-~~~c~G--G  107 (275)
T d1deua_          31 PADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN-AGSCEG--G  107 (275)
T ss_dssp             GGGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS-SEETBE--E
T ss_pred             cccCCCccccCcCCCcCCCCCcccCCCCCCCcCHHHHHHHHHHHHHHHHHcCCcccccccchhheecccc-ccccCC--c
Confidence            45799999999975   669999999   6999999999999999999987643   5699999999986 468999  8


Q ss_pred             Cc-hHHHHHHhCCcCCCCCCcccCCCCCcc------cccc-----CCCCceeeecceeEecCCHHHHHHHHHcCCCEEEE
Q psy7460         444 LE-QPIEYTHQAGLESEKDYPYRNGNGEKF------KCAY-----DKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVG  511 (1026)
Q Consensus       444 ~~-~a~~~~~~~Gi~~e~~ypY~~~~~~~~------~C~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~  511 (1026)
                      .+ .+++|+++.|+++|++|||...+....      .|..     .......+.+.+|..+.+.+.||++|+++|||+++
T Consensus       108 ~~~~a~~~~~~~G~~~e~~~PY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~e~ik~~l~~~GPv~v~  187 (275)
T d1deua_         108 NDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCG  187 (275)
T ss_dssp             CHHHHHHHHHHTCBCBGGGSCCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEEEE
T ss_pred             ccccccchhhcccccccccccccccCCCcccccccCcccccceeeeccceeEEEeCceeecCcHHHHHHHHHhCCCcEEE
Confidence            99 999999999999999999998765211      1111     11222334566777788899999999999999999


Q ss_pred             EecC-ccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcc--------cc
Q psy7460         512 LNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNAC--------GI  582 (1026)
Q Consensus       512 i~~~-~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~c--------gi  582 (1026)
                      |.+. .|++|++|||.   ..|+...+||||+|||||++++++|||||||||++|||+|||||+|+.|.|        +|
T Consensus       188 ~~~~~~f~~y~~Gi~~---~~~~~~~~~HAV~IVGyg~~~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~~~~~~~~i  264 (275)
T d1deua_         188 IMATERLANYTGGIYA---EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAI  264 (275)
T ss_dssp             ECCCHHHHTCCSSEEC---BCCSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTT
T ss_pred             EEeccchhccCCCccc---CccccccCCeEEEEEEEeccCCcEEEEEECCCCCCcccCCEEEEECCCCCCCccccccccc
Confidence            9985 68999999994   456666789999999999999999999999999999999999999997654        59


Q ss_pred             cceeeeeEE
Q psy7460         583 EQIAGYATI  591 (1026)
Q Consensus       583 ~~~~~~~~~  591 (1026)
                      |+.+.|+.|
T Consensus       265 e~~~~~~~p  273 (275)
T d1deua_         265 EEHCTFGDP  273 (275)
T ss_dssp             TSCEEEEEE
T ss_pred             cCccEecCC
Confidence            999999766

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.6e-47  Score=404.18  Aligned_cols=209  Identities=31%  Similarity=0.637  Sum_probs=182.1

Q ss_pred             CCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHH---Hc
Q psy7460         743 PDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTH---QA  819 (1026)
Q Consensus       743 P~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~---~~  819 (1026)
                      |++||||++|+|+||||||.||||||||++++||++++|+++....||+|+|++|...+.+|.|+....++.++.   ..
T Consensus         2 P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~i~~~~~~~ls~q~l~~c~~~~~~~~g~~~~~~~~~~~~~~~~   81 (215)
T d1me4a_           2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNG   81 (215)
T ss_dssp             CSEEEGGGTTCCCCCCBCTTSSCHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHSTT
T ss_pred             CCCeeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhhcCCCCCCCCcccccceeeeeccCC
Confidence            899999999999999999999999999999999999999999999999999999998888999999888888863   24


Q ss_pred             CCCCCCcccCcCCCCCcccccCCCCcceEEecceeeec-ChHHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCCC
Q psy7460         820 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS  898 (1026)
Q Consensus       820 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c~  898 (1026)
                      |++++.+|||...+.....+...... ..+++..+..+ .+.+.||++|+++|||++++.+..|..|.++++..    |.
T Consensus        82 ~~~~~~~ypy~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~~----~~  156 (215)
T d1me4a_          82 AVYTEDSYPYASGEGISPPCTTSGHT-VGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CV  156 (215)
T ss_dssp             EEEBTTTSCCCCTTSCCCCCCCSSCC-EEEECCEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECS----CC
T ss_pred             ccccCcccCccccccccccccccccc-cceEeeeeeeccccHHHHHHHHHhcCceeEEEEeeeecccccccccC----Cc
Confidence            78999999999877632233222222 23355566554 47899999999999999999998899999999865    34


Q ss_pred             CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCccccCCcceEEEE
Q psy7460         899 PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACGIEQIAGYATI  956 (1026)
Q Consensus       899 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cGi~~~~~~~~~  956 (1026)
                      ...++|||+|||||++++++|||||||||++|||+|||||+|++|.|||++.++||++
T Consensus       157 ~~~~~Hav~IVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  214 (215)
T d1me4a_         157 SEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             CSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEC
T ss_pred             cccceeEEEEEEccccCCceEEEEEcCCCCCcccCCEEEEECCCCccccCCceeeEec
Confidence            4578999999999999999999999999999999999999999999999999999974

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=100.00  E-value=8.3e-48  Score=407.26  Aligned_cols=206  Identities=31%  Similarity=0.660  Sum_probs=169.5

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC--CCCCCCCCCCc-hHHHHHH
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLE-QPIEYTH  452 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~--~~gC~G~~G~~-~a~~~~~  452 (1026)
                      ||++||||++++||||||||.||||||||+++++|++++|+++..+.||+|+|+||...  +.+|.|  +.. .++.++.
T Consensus         1 LP~~~Dwr~~~~itpV~dQg~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~q~~~~c~~~~~~~~~~G--~~~~~~~~~~~   78 (218)
T d1aeca_           1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNG--GYITDGFQFII   78 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCBTTBCTTBC--CCHHHHHHHHH
T ss_pred             CCCceeCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccccCCcccCC--Ccccccceeeh
Confidence            79999999999999999999999999999999999999999999999999999999864  345666  666 7888865


Q ss_pred             hC-CcCCCCCCcccCCCCCccccccCCCCceee-ecceeEecCCHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCC
Q psy7460         453 QA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLF-TGKDFLYFNGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKN  528 (1026)
Q Consensus       453 ~~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~  528 (1026)
                      .. +++.|.+|||.....   .|.......... .........+.+.|+++|.++|||+++|.+.  .+.++.+|++.  
T Consensus        79 ~~g~v~~e~~yp~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~--  153 (218)
T d1aeca_          79 NNGGINTEENYPYTAQDG---ECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFT--  153 (218)
T ss_dssp             HHTCBCBTTTSCCCSSCC---CCCHHHHHCCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEEC--
T ss_pred             hCceecCccccCcccccC---ccceeccccccceecccccccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCccc--
Confidence            55 599999999998766   444322211111 1122333457888999999999999999984  35667777773  


Q ss_pred             CCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec---CCcccccceeeeeE
Q psy7460         529 DETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG---NNACGIEQIAGYAT  590 (1026)
Q Consensus       529 ~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~---~n~cgi~~~~~~~~  590 (1026)
                       ..+ ...++|||+|||||++++++|||||||||+.|||+|||||+|+   .|.|||++.++||+
T Consensus       154 -~~~-~~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~~~~~  216 (218)
T d1aeca_         154 -GPC-GTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV  216 (218)
T ss_dssp             -CSC-CSSCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSTTCGGGTTSSCEEEE
T ss_pred             -ccc-cccCCceeEEEEEeccCCeEEEEEEcCCCCCcccCCEEEEEeCCCCCcccccCCcceecc
Confidence             223 3467999999999999999999999999999999999999995   58999999999997

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-47  Score=402.98  Aligned_cols=208  Identities=36%  Similarity=0.759  Sum_probs=182.5

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC---CCCCCCCCCchHHHHHH-H
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK---QCSGCDGCFFEPSIEYT-H  817 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~---~~~gC~GG~~~~a~~y~-~  817 (1026)
                      ||++||||++++||||||||.||||||||++++||++++|+++..+.||+|+|++|..   .+.||+||.+..|+.++ +
T Consensus         1 LP~~~Dwr~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~i~~~~~~~~S~~~~~~~~~~~~~~~gc~gg~~~~a~~~~~~   80 (217)
T d2h7ja1           1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID   80 (217)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCTTBCCCHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCCccCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHhhhhhcccccCCCCCCCcccceeeehhh
Confidence            7999999999999999999999999999999999999999999999999999999975   46899999999999874 6


Q ss_pred             HcCCCCCCcccCcCCCCCcccccCCCCcceEEecceeeec--ChHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCC
Q psy7460         818 QAGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN  893 (1026)
Q Consensus       818 ~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~  893 (1026)
                      ..|++++++|||...+.   .|.... .....++..|...  ..++.|+++|++.|||++++...  .|..|.+|||..+
T Consensus        81 ~~g~~~~~~~p~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~~  156 (217)
T d2h7ja1          81 NKGIDSDASYPYKAMDQ---KCQYDS-KYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP  156 (217)
T ss_dssp             HTCEEBTTTSCCCSSCC---CCCCCG-GGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCCT
T ss_pred             cccccccccCCCccccc---cccccc-ccccceeeeeeccCccHHHHHHHHhhcCceEEEEEeeehhhhcccCCcceeCC
Confidence            78999999999988776   444333 2334466666654  46889999999999999998763  5889999999876


Q ss_pred             CCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcceEEEE
Q psy7460         894 DETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  956 (1026)
Q Consensus       894 ~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~~~~~  956 (1026)
                         +....++|||+|||||++.+++|||||||||+.|||+|||||+|+. |.|||++.++||++
T Consensus       157 ---~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  217 (217)
T d2h7ja1         157 ---SCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  217 (217)
T ss_dssp             ---TCCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             ---CCCCCCCeEEEEEecccCCCceEEEEEcCCCCCcccCCEEEEecCCCCcCCccccccceeC
Confidence               3446789999999999999999999999999999999999999996 89999999999975

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-47  Score=405.65  Aligned_cols=208  Identities=39%  Similarity=0.806  Sum_probs=177.0

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcC--CCCCCCCCCCc-hHHHHHH
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLE-QPIEYTH  452 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~--~~gC~G~~G~~-~a~~~~~  452 (1026)
                      ||++||||++++||||||||.||||||||+++++|++++++++..+.||+|+|++|...  +.+|+|  |.+ .|++|+.
T Consensus         1 LP~~~DwR~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~~~~~~~~~~~~~~~~~g--g~~~~a~~~~~   78 (221)
T d1fh0a_           1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG--GFMARAFQYVK   78 (221)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGC--CCHHHHHHHHH
T ss_pred             CCCCeeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccccceeEEeccccCCcccCC--Cchhhhhhhhh
Confidence            79999999999999999999999999999999999999999999999999999999753  567888  888 9999976


Q ss_pred             hC-CcCCCCCCcccCCCCCccccccCCCCceeeecceeEec--CCHHHHHHHHHcCCCEEEEEecC--ccccccCCceeC
Q psy7460         453 QA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRK  527 (1026)
Q Consensus       453 ~~-Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~  527 (1026)
                      +. +++++.+|||...+.   .|....... ...+..+...  ..+++++++|+++|||++++.+.  .|++|++|++. 
T Consensus        79 ~~g~~~~~~~~p~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~-  153 (221)
T d1fh0a_          79 ENGGLDSEESYPYVAVDE---ICKYRPENS-VAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYF-  153 (221)
T ss_dssp             HHTCEEBTTTSCCCSSCC---CCCCCGGGE-EECCSCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC-
T ss_pred             hcCccccccCcCcccccc---ccccccccc-cccceeeeecCCcHHHHHHHHHHhcCCceEEEEeccccccccCCCccc-
Confidence            54 589999999998776   344333322 2234444443  37888999999999999999884  58999999985 


Q ss_pred             CCCCCCCCCCCeEEEEEEeeec----CCccEEEEEcCCCCCCCCCcEEEEEecC-CcccccceeeeeEE
Q psy7460         528 NDETCSPYDLGHAVLLVGYGKQ----DDIPYWLARNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  591 (1026)
Q Consensus       528 ~~~~c~~~~~~HaV~iVGyG~~----~g~~YWivkNSWG~~WGe~Gy~ri~r~~-n~cgi~~~~~~~~~  591 (1026)
                       ...|....++|+|+|||||.+    ++.+|||||||||++|||+|||||+|+. |.|||++.+.||++
T Consensus       154 -~~~~~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~~yp~~  221 (221)
T d1fh0a_         154 -EPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV  221 (221)
T ss_dssp             -CTTCCSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             -cccccccCCcccEEEeeEeccCcCCCCceEEEEEeCCCCCcccCCEEEEEeCCCCccccCCCcccccC
Confidence             445666678999999999964    6788999999999999999999999995 89999999999974

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=6.8e-47  Score=398.19  Aligned_cols=203  Identities=31%  Similarity=0.611  Sum_probs=169.0

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++||||||||.||||||||+++++|++++|+++....||+|+++||.....||+|  +.+ .|++|+...
T Consensus         1 LP~~~D~R~~~~v~pV~dQg~cGsCwAfa~~~~~e~~~~i~~~~~~~~S~q~~~~c~~~~~g~~g--~~~~~a~~~~~~~   78 (212)
T d1khqa_           1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNG--GYPWSALQLVAQY   78 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--BCHHHHHHHHHHT
T ss_pred             CCCCeeCCCCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHcCCCcccCHHHhhccccccCcccc--ccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999988888888  888 999999999


Q ss_pred             CcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCCC
Q psy7460         455 GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDET  531 (1026)
Q Consensus       455 Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~~  531 (1026)
                      |+++|.++||.+.+.   .|..............+.... ....+++++...|||++++.+.  .|+.|++|++.   ..
T Consensus        79 g~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~---~~  152 (212)
T d1khqa_          79 GIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFV---GP  152 (212)
T ss_dssp             CBCBTTTSCCCSSCC---CCCTTTTCSCSBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEEC---CS
T ss_pred             cccccccCCcccccC---cccccccccceeeeeeeeeeccccHHHHHHHHhcCCcEEEEEeecchhcccccCccc---cc
Confidence            999999999998766   333322222222334444433 3444555555679999999873  68899999994   22


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEE
Q psy7460         532 CSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  591 (1026)
Q Consensus       532 c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~  591 (1026)
                      ++ ..++|||+|||||+    +|||||||||++|||+|||||+|+.    |.|||++.+.||+-
T Consensus       153 ~~-~~~~Hav~iVGyg~----~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T d1khqa_         153 CG-NKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             CC-SCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCTTCGGGTTSCCEEEEC
T ss_pred             cc-cccCeEEEecccCC----cEEEEEcCCCCCcccCCEEEEEcCCCCCCCcCCcccEeeeecc
Confidence            22 35899999999985    4999999999999999999999986    57999999999974

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=100.00  E-value=9.1e-47  Score=398.59  Aligned_cols=207  Identities=30%  Similarity=0.664  Sum_probs=176.8

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcC-
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAG-  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~G-  820 (1026)
                      ||++||||++++|+||||||.||||||||++++||++++++++..+.||+|+|+||+....||.||.+..|++|+.++| 
T Consensus         1 LP~~~DwR~~~~itpV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~gc~Gg~~~~a~~y~~~~g~   80 (216)
T d1cqda_           1 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGG   80 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTS
T ss_pred             CCCcccCCcCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCccccHHHhhhcccccCCCCCcchHHHHHHHHhcCC
Confidence            8999999999999999999999999999999999999999999999999999999998888999999999999987766 


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c  897 (1026)
                      +..|++|||.+...   .|........ ++...|.... +.+.+++.+...+||++++.+.  .|..|++|||...    
T Consensus        81 ~~~e~~~p~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~~----  152 (216)
T d1cqda_          81 INSEETYPYRGQDG---ICNSTVNAPV-VSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS----  152 (216)
T ss_dssp             BCBTTTSCCCSSCC---CCCSSSCCCS-BCCSEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCC----
T ss_pred             ccccccCCcccccc---ccccccCCce-eEeeeEEecCCcchhhHHHHhhcCCcceeeeeecccccccccCccccc----
Confidence            55688999988766   4443332222 2444555433 4556667777889999999873  5899999999753    


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEE
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  956 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~  956 (1026)
                      ....++|||+|||||++++++|||||||||+.||++|||||+|+.    +.|||++.++||+.
T Consensus       153 ~~~~~~Hav~iVGyg~~~~~~~wiv~NSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (216)
T d1cqda_         153 CNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVK  215 (216)
T ss_dssp             CCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             ccccCCcceeeeccccccCCceEEEECCCCCccccCCEEEEEcCCCCCCCCCCccceeeeeec
Confidence            446789999999999999999999999999999999999999974    68999999999963

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-47  Score=412.21  Aligned_cols=213  Identities=29%  Similarity=0.525  Sum_probs=175.6

Q ss_pred             CCCCceeccC----CCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCC--ccCCHHHHHhhhc--CCCCCCCCCCCc-
Q psy7460         375 PVPDAWDWRK----KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL--VEFSKSQLVECAK--QCSGCGGCDGLE-  445 (1026)
Q Consensus       375 ~lP~~~DwR~----~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~--~~lS~q~lvdC~~--~~~gC~G~~G~~-  445 (1026)
                      .||++||||+    .++||||||||.||||||||++++||++++|+++..  ..||+|+|++|..  .+.||.|  |.+ 
T Consensus         1 ~lP~~~D~R~~w~~~~~vtpV~dQg~cGsCwAfA~~~~lEs~~~i~~~~~~~~~lS~~~l~~~~~~~~~~gc~g--g~~~   78 (254)
T d1gmya_           1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNG--GYPA   78 (254)
T ss_dssp             CCCSSEEHHHHSTTCGGGGCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSSCCCBCHHHHHHHSGGGGBCGGGC--BCHH
T ss_pred             CCCcCCcchhhcCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHCCCCccccchHHHHhhccccCCCCCCC--CcHH
Confidence            4899999665    699999999999999999999999999999998754  6899999999964  3679999  999 


Q ss_pred             hHHHHHHhCCcCCCCCCcccCCCC-------------CccccccCC-------------C----CceeeecceeEecCCH
Q psy7460         446 QPIEYTHQAGLESEKDYPYRNGNG-------------EKFKCAYDK-------------S----KVKLFTGKDFLYFNGS  495 (1026)
Q Consensus       446 ~a~~~~~~~Gi~~e~~ypY~~~~~-------------~~~~C~~~~-------------~----~~~~~~~~~~~~~~~~  495 (1026)
                      .|+.++.+.|+++|..|||...-.             ....|....             .    .........+....++
T Consensus        79 ~a~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (254)
T d1gmya_          79 EAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE  158 (254)
T ss_dssp             HHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCBSSSCCSSCBCCSCCCCCCCCCSCCTTCCSCHHHHCBCBSCCEECCSCH
T ss_pred             HHHHHHHHcCccccccccccccccccccccccccccCccCccccccCCccccccccCCcccceeeeeeeeeeeeccccHH
Confidence            999999999999999998754211             000111100             0    0011112334445589


Q ss_pred             HHHHHHHHcCCCEEEEEec-CccccccCCceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEE
Q psy7460         496 ETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE  574 (1026)
Q Consensus       496 ~~~~~~l~~~gPv~v~i~~-~~~~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~  574 (1026)
                      +.||++|+++|||+++|.+ ..|+.|.+||+   ...|....++|||+|||||++++++|||||||||++|||+|||||+
T Consensus       159 ~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~---~~~~~~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~i~  235 (254)
T d1gmya_         159 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY---QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKIL  235 (254)
T ss_dssp             HHHHHHHHHHCCEEEEEEEEGGGTTCCSSEE---CCCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEEeechhhhccCCcc---ccccccccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEEEE
Confidence            9999999999999999999 57999999999   4455556679999999999999999999999999999999999999


Q ss_pred             ecCCcccccceeeeeEEe
Q psy7460         575 RGNNACGIEQIAGYATID  592 (1026)
Q Consensus       575 r~~n~cgi~~~~~~~~~~  592 (1026)
                      |+.|+|||++.+.|++|+
T Consensus       236 ~~~n~cgi~~~~~~~~p~  253 (254)
T d1gmya_         236 RGQDHCGIESEVVAGIPR  253 (254)
T ss_dssp             CSSCGGGTTTSCEECCBC
T ss_pred             cCCCccCcCCceEeccCC
Confidence            999999999999999875

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-47  Score=416.87  Aligned_cols=243  Identities=24%  Similarity=0.449  Sum_probs=192.8

Q ss_pred             ccCcCCCCCHHHHHhhcCCCCCchhhhhhhhhhhhhhhhhhcccCCCCCCCceecCCCC---CCCCCCCCC---CCchHH
Q psy7460         694 GTSEFSDRSPEEILCKTGFKWSERTYERIVADREKVEKMLMEVEKDGPVPDAWDWRKKN---VTGPAGDQA---ACGSCW  767 (1026)
Q Consensus       694 giN~faD~t~eEf~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g---~v~pv~dQg---~CGSCW  767 (1026)
                      |+|+++++...|+.-. +.+.-               +.+.+.....+||++||||++|   .++||||||   .|||||
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~~~~LP~~~DwR~~~~~~~~tpvkdQG~~~~CGsCW   65 (275)
T d1deua_           2 GQTCYRPLRGDGLAPL-GRTTY---------------PRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCW   65 (275)
T ss_dssp             CCCSBCCCTTSSSCCC-CBCSS---------------CCTTCCCCGGGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHH
T ss_pred             CCcccccccccccccC-CccCC---------------CCCcccCCcccCCCccccCcCCCcCCCCCcccCCCCCCCcCHH
Confidence            6788888877665411 11100               1112223345899999999985   569999998   699999


Q ss_pred             HHHHHHHHHHHHHHhcCC---ceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCCCCCCcccCcCCCCCcc------c
Q psy7460         768 AFSIAGMLEGQYAIKTGK---LVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEKF------K  838 (1026)
Q Consensus       768 Afa~~~ale~~~~i~~~~---~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~~------~  838 (1026)
                      |||++++||++++++++.   ...||+|+|++|.. ..+|.||++..+++|+.++|+++|++|||...+....      .
T Consensus        66 AfAa~~~lE~~~~i~~~~~~~~~~lS~q~l~~~~~-~~~c~GG~~~~a~~~~~~~G~~~e~~~PY~~~~~~~~~~~~~~~  144 (275)
T d1deua_          66 AHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN-AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGT  144 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS-SEETBEECHHHHHHHHHHTCBCBGGGSCCCSSCCCCCHHHHSEE
T ss_pred             HHHHHHHHHHHHHHHcCCcccccccchhheecccc-ccccCCcccccccchhhcccccccccccccccCCCcccccccCc
Confidence            999999999999998764   35699999999975 4589999999999999999999999999998766211      1


Q ss_pred             ccCC-----CCcceEEecceeeecChHHHHHHHHHhcCCEEEEEeCC-CCcccCCcceeCCCCCCCCCCCCeEEEEEEee
Q psy7460         839 CAYD-----KSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG  912 (1026)
Q Consensus       839 C~~~-----~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~~-~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg  912 (1026)
                      |...     ......+.+..|..+.+.+.||++|+++|||++++++. .|++|++|||..+   |+...++|||+|||||
T Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~~~---~~~~~~~HAV~IVGyg  221 (275)
T d1deua_         145 CNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEY---QDTTYINHVVSVAGWG  221 (275)
T ss_dssp             EEETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECBC---CSCCCCCEEEEEEEEE
T ss_pred             ccccceeeeccceeEEEeCceeecCcHHHHHHHHHhCCCcEEEEEeccchhccCCCcccCc---cccccCCeEEEEEEEe
Confidence            1110     11122235566777788899999999999999999984 6899999999875   5566789999999999


Q ss_pred             ecCCccEEEEEcCCCCCCCCCcEEEEEecCCccc--------cCCcceEEEE
Q psy7460         913 KQDNIPYWLVRNSWGPIGPDEGFFKIERGNNACG--------IEQIAGYATI  956 (1026)
Q Consensus       913 ~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cG--------i~~~~~~~~~  956 (1026)
                      ++++.+|||||||||++|||+|||||+|+.+.||        |++.++|+..
T Consensus       222 ~~~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~~~~~~~~ie~~~~~~~p  273 (275)
T d1deua_         222 ISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDP  273 (275)
T ss_dssp             EETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEE
T ss_pred             ccCCcEEEEEECCCCCCcccCCEEEEECCCCCCCccccccccccCccEecCC
Confidence            9999999999999999999999999999876655        8999888543

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-46  Score=398.89  Aligned_cols=209  Identities=39%  Similarity=0.786  Sum_probs=179.8

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcC--CCCCCCCCCchHHHHHHHHc
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCDGCFFEPSIEYTHQA  819 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~--~~~gC~GG~~~~a~~y~~~~  819 (1026)
                      ||++||||++|+||||||||.||||||||++++||+++.++++..+.||+|+|++|..  .+.+|+||.+..|++|+.+.
T Consensus         1 LP~~~DwR~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~~~~~~~~~~~~~~~~~gg~~~~a~~~~~~~   80 (221)
T d1fh0a_           1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKEN   80 (221)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHHHH
T ss_pred             CCCCeeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccccceeEEeccccCCcccCCCchhhhhhhhhhc
Confidence            8999999999999999999999999999999999999999999999999999999975  46789999999999998665


Q ss_pred             C-CCCCCcccCcCCCCCcccccCCCCcceEEecceeeec--ChHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCC
Q psy7460         820 G-LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND  894 (1026)
Q Consensus       820 G-i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~  894 (1026)
                      | ++++++|||...+.   .|........ ..+..+...  ..++++|++|+++|||++++.+.  .|++|++|++..+ 
T Consensus        81 g~~~~~~~~p~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~-  155 (221)
T d1fh0a_          81 GGLDSEESYPYVAVDE---ICKYRPENSV-AQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEP-  155 (221)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGEE-ECCSCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT-
T ss_pred             CccccccCcCcccccc---cccccccccc-ccceeeeecCCcHHHHHHHHHHhcCCceEEEEeccccccccCCCccccc-
Confidence            5 78999999998776   4443333322 344444433  35788999999999999999884  5999999999866 


Q ss_pred             CCCCCCCCCeEEEEEEeeec----CCccEEEEEcCCCCCCCCCcEEEEEecC-CccccCCcceEEEE
Q psy7460         895 ETCSPYDLGHAVLLVGYGKQ----DNIPYWLVRNSWGPIGPDEGFFKIERGN-NACGIEQIAGYATI  956 (1026)
Q Consensus       895 ~~c~~~~~~HaV~iVGyg~~----~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cGi~~~~~~~~~  956 (1026)
                       .|.....+|+|+|||||.+    ++.+|||||||||++|||+|||||+|+. |.|||++.++||++
T Consensus       156 -~~~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~~yp~~  221 (221)
T d1fh0a_         156 -DCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV  221 (221)
T ss_dssp             -TCCSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             -cccccCCcccEEEeeEeccCcCCCCceEEEEEeCCCCCcccCCEEEEEeCCCCccccCCCcccccC
Confidence             4556678999999999953    6789999999999999999999999985 89999999999964

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=3.2e-46  Score=396.69  Aligned_cols=208  Identities=36%  Similarity=0.708  Sum_probs=171.5

Q ss_pred             CCCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCC-CCCCCCCCCc-hHHHHH-
Q psy7460         375 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQC-SGCGGCDGLE-QPIEYT-  451 (1026)
Q Consensus       375 ~lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~-~gC~G~~G~~-~a~~~~-  451 (1026)
                      .||++||||++++||||||||.||||||||+++++|++++++++..+.||+|+|+||.... .+|.|  |.. .|+.++ 
T Consensus         1 ~lP~~~Dwr~~~~itpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~~S~q~l~~c~~~~~~~~~G--~~~~~a~~~~~   78 (224)
T d1s4va_           1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNG--GLMDYAFEFIK   78 (224)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBC--BCHHHHHHHHH
T ss_pred             CCCCceeCCCCCCCCCCccCCcCchHHHHHHHHHHHHHHHHhcCCCCccchhhhhhccccccccCCC--CchhhHhhhHh
Confidence            4899999999999999999999999999999999999999999999999999999998753 45566  666 888886 


Q ss_pred             HhCCcCCCCCCcccCCCCCccccccCCCCceeeecceeEec--CCHHHHHHHHHcCCCEEEEEecC--ccccccCCceeC
Q psy7460         452 HQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRK  527 (1026)
Q Consensus       452 ~~~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~  527 (1026)
                      +..|++.|.++||...+.   .|...........+..+...  .+++.||++|.+ +||++++.+.  .|++|.+|+|. 
T Consensus        79 ~~g~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~-  153 (224)
T d1s4va_          79 QRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT-  153 (224)
T ss_dssp             HHTCBCBTTTSCCCSSCC---CCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC-
T ss_pred             hcCceeecccccccCcCC---ccccccccccceeecccccccCccHHHHHHHHhc-CCceEEEEecchhhhhccCCCcc-
Confidence            556799999999988766   33322222222233444443  488899999875 7888888773  68999999994 


Q ss_pred             CCCCCCCCCCCeEEEEEEeeec-CCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeEEe
Q psy7460         528 NDETCSPYDLGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATID  592 (1026)
Q Consensus       528 ~~~~c~~~~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~~~  592 (1026)
                        . |....++|||+|||||++ ++++|||||||||+.|||+|||||+|+.    |.|||++.++||+++
T Consensus       154 --~-~~~~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~~  220 (224)
T d1s4va_         154 --G-SCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK  220 (224)
T ss_dssp             --C-CCCCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             --C-cccccCCcceEEEecccccCCceEEEEEcCCCCccccCceEEEECCCCCCCCcCCccceeeeeecc
Confidence              2 344567999999999976 7899999999999999999999999983    789999999999975

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=5.6e-46  Score=392.34  Aligned_cols=204  Identities=32%  Similarity=0.687  Sum_probs=169.0

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhC
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQA  454 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~  454 (1026)
                      ||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||.....+|.|  +.. .|++|+...
T Consensus         1 LP~s~Dwr~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~G--~~~~~a~~~~~~~   78 (215)
T d1iwda_           1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNG--GWMNNAFQYIITN   78 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCceeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccChhhheecccCCCCCCC--cchhhHHHHHHhc
Confidence            79999999999999999999999999999999999999999999999999999999988888888  888 999997655


Q ss_pred             C-cCCCCCCcccCCCCCccccccCCCCceeeecceeEecC-CHHHHHHHHHcCCCEEEEEecC--ccccccCCceeCCCC
Q psy7460         455 G-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDE  530 (1026)
Q Consensus       455 G-i~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gPv~v~i~~~--~~~~y~~Gi~~~~~~  530 (1026)
                      | +..+.++||.....   .|.....+.  ..+..|.... +.+.++++|...+||.+++.+.  .+.+|.+|++.   .
T Consensus        79 g~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~---~  150 (215)
T d1iwda_          79 GGIDTQQNYPYSAVQG---SCKPYRLRV--VSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFT---G  150 (215)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCTTCCCC--BCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEEC---C
T ss_pred             CeeccccCCCcccccc---cccccccce--eEeccccccCccHHHHHHHHHhcCCccceeeecchhhhccccCccc---c
Confidence            5 77778888877655   343322222  2445555543 4455555566679999999884  46677888884   3


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CcccccceeeeeE
Q psy7460         531 TCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACGIEQIAGYAT  590 (1026)
Q Consensus       531 ~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~----n~cgi~~~~~~~~  590 (1026)
                      .++ ...+|||+|||||++++++|||||||||+.|||+|||||+|+.    |.|||++.++||+
T Consensus       151 ~~~-~~~~Hav~iVGyg~~~~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~~~p~  213 (215)
T d1iwda_         151 PCG-TAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT  213 (215)
T ss_dssp             CCC-CCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             ccc-ccccceEEEEEeecCCCceEEEEECCCCcccccCCEEEEECCCCCCCCcCCccccceeec
Confidence            333 4579999999999999999999999999999999999999985    6799999999997

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=6.8e-46  Score=389.56  Aligned_cols=198  Identities=32%  Similarity=0.688  Sum_probs=166.5

Q ss_pred             CCCceeccCCCCCCCCCCCCCCcchHHHHhHHHHHHHHHHHcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHH-Hh
Q psy7460         376 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYT-HQ  453 (1026)
Q Consensus       376 lP~~~DwR~~~~vt~vk~Qg~CgSCwAfa~~~~~e~~~~i~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~-~~  453 (1026)
                      ||++||||++++||||||||.||||||||+++++|++++++++..+.||+|+|+||...+.+|.|  |.+ .++.++ ..
T Consensus         1 LP~~~D~R~~~~vtpV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~g--~~~~~~~~~~~~~   78 (208)
T d1o0ea_           1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLG--GAFVFAYQYIINN   78 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBC--CCHHHHHHHHHHH
T ss_pred             CCCcccCccCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcCHHHhhhhccCCCCCCC--ccchhhhhhhhhc
Confidence            89999999999999999999999999999999999999999999999999999999988889998  877 888885 55


Q ss_pred             CCcCCCCCCcccCCCCCccccccCCCCceeeecceeEecC--CHHHHHHHHHcCCCEEEEEec--CccccccCCceeCCC
Q psy7460         454 AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKND  529 (1026)
Q Consensus       454 ~Gi~~e~~ypY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gPv~v~i~~--~~~~~y~~Gi~~~~~  529 (1026)
                      ++++.+.++||...+.   .|.......   ....|..+.  ++..++.+ ...|||++++..  ..|..|.+|||.   
T Consensus        79 g~~~~~~~~p~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~pv~~~~~~~~~~f~~~~~gi~~---  148 (208)
T d1o0ea_          79 GGIDTQANYPYKAVQG---PCQAASKVV---SIDGYNGVPFCNEXALKQA-VAVQPSTVAIDASSAQFQQYSSGIFS---  148 (208)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCCCCCCB---CCCEEEECCTTCHHHHHHH-HHHSCEEEEECCCSHHHHTCCSSEEC---
T ss_pred             CccccccCCCCcccCC---CccCccccc---ccccccccccchhhHHHHH-hhcCCceEEEEecchhhcccccCccc---
Confidence            6688999999998877   676554333   345555543  55555555 456888888876  368889999994   


Q ss_pred             CCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEe--cCCcccccceeeeeE
Q psy7460         530 ETCSPYDLGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIEQIAGYAT  590 (1026)
Q Consensus       530 ~~c~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r--~~n~cgi~~~~~~~~  590 (1026)
                      . +.....+|||+|||||+    +|||||||||++|||+|||||+|  +.|.|||++.+.||+
T Consensus       149 ~-~~~~~~~Hav~iVGy~~----~ywiirNSWG~~WGd~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         149 G-PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             C-CCCSCCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             c-cccccCCcEEEEEeeec----ceEEEECCCCCCcccCCeEEEEccCCCCccCccccceecc
Confidence            2 22345799999999964    59999999999999999999999  457899999999997

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=7.3e-46  Score=390.26  Aligned_cols=204  Identities=30%  Similarity=0.607  Sum_probs=171.3

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcCC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGL  821 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~Gi  821 (1026)
                      ||++||||++++|+||||||.||||||||++++||++++++++....||+|+++||.....||.|+.+..|+.|+.+.|+
T Consensus         1 LP~~~D~R~~~~v~pV~dQg~cGsCwAfa~~~~~e~~~~i~~~~~~~~S~q~~~~c~~~~~g~~g~~~~~a~~~~~~~g~   80 (212)
T d1khqa_           1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGI   80 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHHHTCB
T ss_pred             CCCCeeCCCCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHcCCCcccCHHHhhccccccCccccccccccccccccccc
Confidence            89999999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             CCCCcccCcCCCCCcccccCCCCcceEEecceeeec-ChHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCCC
Q psy7460         822 ESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCS  898 (1026)
Q Consensus       822 ~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c~  898 (1026)
                      ++|+.+||.+...   .|..............+... .....+++++...|||++++.+.  .|..|++|+|..+   +.
T Consensus        81 ~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~---~~  154 (212)
T d1khqa_          81 HYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGP---CG  154 (212)
T ss_dssp             CBTTTSCCCSSCC---CCCTTTTCSCSBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCS---CC
T ss_pred             cccccCCcccccC---cccccccccceeeeeeeeeeccccHHHHHHHHhcCCcEEEEEeecchhcccccCccccc---cc
Confidence            9999999998766   33322222222233344332 23444555556689999998873  5899999999765   22


Q ss_pred             CCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEEE
Q psy7460         899 PYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYATI  956 (1026)
Q Consensus       899 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~~  956 (1026)
                       ..++|||+|||||+    +|||||||||++|||+|||||+|+.    |.|||++.++||+.
T Consensus       155 -~~~~Hav~iVGyg~----~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T d1khqa_         155 -NKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             -SCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCTTCGGGTTSCCEEEEC
T ss_pred             -cccCeEEEecccCC----cEEEEEcCCCCCcccCCEEEEEcCCCCCCCcCCcccEeeeecc
Confidence             46899999999985    4999999999999999999999986    57999999999974

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=100.00  E-value=4.2e-46  Score=394.07  Aligned_cols=208  Identities=30%  Similarity=0.653  Sum_probs=174.5

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCC--CCCCCCCCchHHHHHHHHc
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCDGCFFEPSIEYTHQA  819 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~--~~gC~GG~~~~a~~y~~~~  819 (1026)
                      ||++||||++++|+||||||.||||||||++++||+++.++++..+.||+|+|+||...  +.+|.|+....++.++.++
T Consensus         1 LP~~~Dwr~~~~itpV~dQg~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~q~~~~c~~~~~~~~~~G~~~~~~~~~~~~~   80 (218)
T d1aeca_           1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINN   80 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCBTTBCTTBCCCHHHHHHHHHHH
T ss_pred             CCCceeCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccccCCcccCCCcccccceeehhC
Confidence            89999999999999999999999999999999999999999999999999999999863  5678999999999998766


Q ss_pred             C-CCCCCcccCcCCCCCcccccCCCCcceE-EecceeeecChHHHHHHHHHhcCCEEEEEeCC-C-CcccCCcceeCCCC
Q psy7460         820 G-LESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-L-IHDYNGTPIRKNDE  895 (1026)
Q Consensus       820 G-i~~e~~yPY~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~ik~~l~~~GPV~v~i~~~-~-f~~y~~Gi~~~~~~  895 (1026)
                      | ++.|.+|||.....   .|......... ..........+.+.|+++|..+|||+++|.+. . +.++.+|++..+  
T Consensus        81 g~v~~e~~yp~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~--  155 (218)
T d1aeca_          81 GGINTEENYPYTAQDG---ECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP--  155 (218)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCHHHHHCCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCS--
T ss_pred             ceecCccccCcccccC---ccceeccccccceecccccccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCccccc--
Confidence            5 89999999998776   44422211111 11222233456788999999999999999984 3 666777877654  


Q ss_pred             CCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec---CCccccCCcceEEEE
Q psy7460         896 TCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG---NNACGIEQIAGYATI  956 (1026)
Q Consensus       896 ~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~---~n~cGi~~~~~~~~~  956 (1026)
                       + ...++|||+|||||++++++|||||||||+.||++|||||+|+   .|.|||++.++||+.
T Consensus       156 -~-~~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~~~~~~  217 (218)
T d1aeca_         156 -C-GTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPVK  217 (218)
T ss_dssp             -C-CSSCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSTTCGGGTTSSCEEEEC
T ss_pred             -c-cccCCceeEEEEEeccCCeEEEEEEcCCCCCcccCCEEEEEeCCCCCcccccCCcceeccc
Confidence             2 3567999999999999999999999999999999999999994   689999999999973

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-46  Score=402.11  Aligned_cols=212  Identities=28%  Similarity=0.497  Sum_probs=175.0

Q ss_pred             CCCCceecCC----CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCc--eecCHHHHHhhcC--CCCCCCCCCchHH
Q psy7460         741 PVPDAWDWRK----KNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKL--VEFSKSQLVECAK--QCSGCDGCFFEPS  812 (1026)
Q Consensus       741 ~lP~s~DwR~----~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~--~~lS~Q~lvdC~~--~~~gC~GG~~~~a  812 (1026)
                      .||++||||+    .|+||||||||.||||||||++++||++++++++..  ..||+|+|++|..  .+.||.||.+..|
T Consensus         1 ~lP~~~D~R~~w~~~~~vtpV~dQg~cGsCwAfA~~~~lEs~~~i~~~~~~~~~lS~~~l~~~~~~~~~~gc~gg~~~~a   80 (254)
T d1gmya_           1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEA   80 (254)
T ss_dssp             CCCSSEEHHHHSTTCGGGGCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSSCCCBCHHHHHHHSGGGGBCGGGCBCHHHH
T ss_pred             CCCcCCcchhhcCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHCCCCccccchHHHHhhccccCCCCCCCCcHHHH
Confidence            4899999666    699999999999999999999999999999987754  6799999999964  4689999999999


Q ss_pred             HHHHHHcCCCCCCcccCcCCCC-------------CcccccCCCC-------------c----ceEEecceeeecChHHH
Q psy7460         813 IEYTHQAGLESEKDYPYKNANG-------------EKFKCAYDKS-------------K----VKLFTGKDFLHFNGSET  862 (1026)
Q Consensus       813 ~~y~~~~Gi~~e~~yPY~~~~~-------------~~~~C~~~~~-------------~----~~~~~~~~~~~~~~~~~  862 (1026)
                      +.++.+.|+++|..||+...-.             ....|.....             .    ........+....+++.
T Consensus        81 ~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (254)
T d1gmya_          81 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKD  160 (254)
T ss_dssp             HHHHHHTCBCBCCSTTCCCSSSCCCSCCCBSSSCCSSCBCCSCCCCCCCCCSCCTTCCSCHHHHCBCBSCCEECCSCHHH
T ss_pred             HHHHHHcCccccccccccccccccccccccccccCccCccccccCCccccccccCCcccceeeeeeeeeeeeccccHHHH
Confidence            9999999999999998754211             0111211100             0    00001112233456899


Q ss_pred             HHHHHHhcCCEEEEEeC-CCCcccCCcceeCCCCCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec
Q psy7460         863 MKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG  941 (1026)
Q Consensus       863 ik~~l~~~GPV~v~i~~-~~f~~y~~Gi~~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~  941 (1026)
                      ||++|+++|||++++.+ +.|+.|.+||+..+   |....++|||+|||||++++.+|||||||||++|||+|||||+|+
T Consensus       161 ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~~~---~~~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~i~~~  237 (254)
T d1gmya_         161 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG  237 (254)
T ss_dssp             HHHHHHHHCCEEEEEEEEGGGTTCCSSEECCC---SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECS
T ss_pred             HHHHHHHcCCEEEEEEeechhhhccCCccccc---cccccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEEEEcC
Confidence            99999999999999998 67999999999765   666778999999999999999999999999999999999999999


Q ss_pred             CCccccCCcceEEE
Q psy7460         942 NNACGIEQIAGYAT  955 (1026)
Q Consensus       942 ~n~cGi~~~~~~~~  955 (1026)
                      .|.|||++.+++++
T Consensus       238 ~n~cgi~~~~~~~~  251 (254)
T d1gmya_         238 QDHCGIESEVVAGI  251 (254)
T ss_dssp             SCGGGTTTSCEECC
T ss_pred             CCccCcCCceEecc
Confidence            99999999999875

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=3.5e-45  Score=388.56  Aligned_cols=212  Identities=34%  Similarity=0.681  Sum_probs=175.5

Q ss_pred             CCCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCC-CCCCCCCCchHHHHHHH-H
Q psy7460         741 PVPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCDGCFFEPSIEYTH-Q  818 (1026)
Q Consensus       741 ~lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~-~~gC~GG~~~~a~~y~~-~  818 (1026)
                      .||++||||++++|+||||||.||||||||+++++|+++.++++..+.||+|+|+||... ..+|.|+....|+.++. .
T Consensus         1 ~lP~~~Dwr~~~~itpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~~S~q~l~~c~~~~~~~~~G~~~~~a~~~~~~~   80 (224)
T d1s4va_           1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQR   80 (224)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHH
T ss_pred             CCCCceeCCCCCCCCCCccCCcCchHHHHHHHHHHHHHHHHhcCCCCccchhhhhhccccccccCCCCchhhHhhhHhhc
Confidence            489999999999999999999999999999999999999999999999999999999864 56788999999999975 4


Q ss_pred             cCCCCCCcccCcCCCCCcccccCCCCcceEEecceee--ecChHHHHHHHHHhcCCEEEEEeC--CCCcccCCcceeCCC
Q psy7460         819 AGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFL--HFNGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKND  894 (1026)
Q Consensus       819 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~--~~~~~~~ik~~l~~~GPV~v~i~~--~~f~~y~~Gi~~~~~  894 (1026)
                      .|++.|.++||...+.   .|..........++..+.  ...+.+.||++|.+ +||++++.+  +.|..|.+|+|... 
T Consensus        81 g~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~~~-  155 (224)
T d1s4va_          81 GGITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-  155 (224)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-
T ss_pred             CceeecccccccCcCC---ccccccccccceeecccccccCccHHHHHHHHhc-CCceEEEEecchhhhhccCCCccCc-
Confidence            5788888899988766   332221222222333443  34568899999975 788888876  35999999999753 


Q ss_pred             CCCCCCCCCeEEEEEEeeec-CCccEEEEEcCCCCCCCCCcEEEEEec----CCccccCCcceEEEEeecC
Q psy7460         895 ETCSPYDLGHAVLLVGYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERG----NNACGIEQIAGYATIDVVK  960 (1026)
Q Consensus       895 ~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~----~n~cGi~~~~~~~~~~~~~  960 (1026)
                         ....++|||+|||||++ ++++|||||||||+.||++|||||+|+    .|.|||++.++||+.+..+
T Consensus       156 ---~~~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~~~~~  223 (224)
T d1s4va_         156 ---CGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSN  223 (224)
T ss_dssp             ---CCCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECCSSC
T ss_pred             ---ccccCCcceEEEecccccCCceEEEEEcCCCCccccCceEEEECCCCCCCCcCCccceeeeeeccCCC
Confidence               34567999999999976 689999999999999999999999997    3789999999999876554

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=6.3e-45  Score=384.20  Aligned_cols=205  Identities=31%  Similarity=0.698  Sum_probs=171.9

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHHcC-
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAG-  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~~G-  820 (1026)
                      ||++||||++++|+||+|||.||||||||++++||++++++++..+.||+|+|+||.....+|.|+....|++|+.++| 
T Consensus         1 LP~s~Dwr~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~G~~~~~a~~~~~~~g~   80 (215)
T d1iwda_           1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGG   80 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCceeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccChhhheecccCCCCCCCcchhhHHHHHHhcCe
Confidence            8999999999999999999999999999999999999999999999999999999998889999999999999987665 


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeecC-hHHHHHHHHHhcCCEEEEEeCC--CCcccCCcceeCCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETC  897 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPV~v~i~~~--~f~~y~~Gi~~~~~~~c  897 (1026)
                      ++.+.++||.....   .|......  ..++..|.... +.+.++++|...+||.+++.+.  .|..+.+|+|..+   +
T Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~~---~  152 (215)
T d1iwda_          81 IDTQQNYPYSAVQG---SCKPYRLR--VVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGP---C  152 (215)
T ss_dssp             BCBTTTSCCCSSCC---CCCTTCCC--CBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCC---C
T ss_pred             eccccCCCcccccc---cccccccc--eeEeccccccCccHHHHHHHHHhcCCccceeeecchhhhccccCccccc---c
Confidence            66677778877665   44332222  22445555443 3445555666679999999873  4677788998765   3


Q ss_pred             CCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecC----CccccCCcceEEE
Q psy7460         898 SPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGN----NACGIEQIAGYAT  955 (1026)
Q Consensus       898 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~----n~cGi~~~~~~~~  955 (1026)
                      + ...+|||+|||||++++++|||||||||+.|||+|||||+|+.    |.|||++.++||+
T Consensus       153 ~-~~~~Hav~iVGyg~~~~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~~~p~  213 (215)
T d1iwda_         153 G-TAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT  213 (215)
T ss_dssp             C-CCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             c-ccccceEEEEEeecCCCceEEEEECCCCcccccCCEEEEECCCCCCCCcCCccccceeec
Confidence            3 4679999999999999999999999999999999999999985    5799999999996

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=1.5e-44  Score=379.35  Aligned_cols=199  Identities=32%  Similarity=0.702  Sum_probs=168.4

Q ss_pred             CCCceecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCceecCHHHHHhhcCCCCCCCCCCchHHHHHHHH-cC
Q psy7460         742 VPDAWDWRKKNVTGPAGDQAACGSCWAFSIAGMLEGQYAIKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQ-AG  820 (1026)
Q Consensus       742 lP~s~DwR~~g~v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~~~~~lS~Q~lvdC~~~~~gC~GG~~~~a~~y~~~-~G  820 (1026)
                      ||++||||++++||||||||.||||||||++++||++++++++..+.||+|+|+||...+.+|.|+.+..++.++.. .|
T Consensus         1 LP~~~D~R~~~~vtpV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~g~~~~~~~~~~~~~g~   80 (208)
T d1o0ea_           1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGG   80 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcccCccCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcCHHHhhhhccCCCCCCCccchhhhhhhhhcCc
Confidence            89999999999999999999999999999999999999999999999999999999988899999999999999754 55


Q ss_pred             CCCCCcccCcCCCCCcccccCCCCcceEEecceeeec--ChHHHHHHHHHhcCCEEEEEeC--CCCcccCCcceeCCCCC
Q psy7460         821 LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDET  896 (1026)
Q Consensus       821 i~~e~~yPY~~~~~~~~~C~~~~~~~~~~~~~~~~~~--~~~~~ik~~l~~~GPV~v~i~~--~~f~~y~~Gi~~~~~~~  896 (1026)
                      ++++.++||...+.   .|......   +....|..+  .++..+++++ ..|||++++..  ..|..|.+|||..+   
T Consensus        81 ~~~~~~~p~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~pv~~~~~~~~~~f~~~~~gi~~~~---  150 (208)
T d1o0ea_          81 IDTQANYPYKAVQG---PCQAASKV---VSIDGYNGVPFCNEXALKQAV-AVQPSTVAIDASSAQFQQYSSGIFSGP---  150 (208)
T ss_dssp             BCBTTTSCCCSSCC---CCCCCCCC---BCCCEEEECCTTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCC---
T ss_pred             cccccCCCCcccCC---CccCcccc---cccccccccccchhhHHHHHh-hcCCceEEEEecchhhcccccCccccc---
Confidence            78889999998877   67654432   234455443  3455555554 56888888876  35899999999764   


Q ss_pred             CCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCcEEEEEec--CCccccCCcceEEE
Q psy7460         897 CSPYDLGHAVLLVGYGKQDNIPYWLVRNSWGPIGPDEGFFKIERG--NNACGIEQIAGYAT  955 (1026)
Q Consensus       897 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~--~n~cGi~~~~~~~~  955 (1026)
                      + ....+|||+|||||+    +|||||||||++|||+|||||+|+  .|.|||++.+.||+
T Consensus       151 ~-~~~~~Hav~iVGy~~----~ywiirNSWG~~WGd~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         151 C-GTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             C-CSCCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             c-cccCCcEEEEEeeec----ceEEEECCCCCCcccCCeEEEEccCCCCccCccccceecc
Confidence            2 245799999999965    599999999999999999999994  57899999999997

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.47  E-value=2.8e-13  Score=152.87  Aligned_cols=187  Identities=17%  Similarity=0.168  Sum_probs=127.8

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCcccCHHHHHhhcC----------------------------CCCCC
Q psy7460          23 TGPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECAK----------------------------QCSGC   73 (1026)
Q Consensus        23 ~~pV~nQg~cGsCwAfA~~~~le~~~~i~~~-~~~~LS~q~l~~c~~----------------------------~~~gC   73 (1026)
                      .+||.||+.-|.||.||++..|+..+..+-+ ..++||+.+|+-.++                            ....+
T Consensus        66 ~~~vtnQ~~SGrCW~FA~ln~lr~~~~~~~~~~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~  145 (458)
T d3gcba_          66 STPVTNQKSSGRAWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTE  145 (458)
T ss_dssp             CCSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTC
T ss_pred             CCCcccCCCCcccHHHhChHHHHHHHHHHcCCCCeeecHHHHHHhhHHHHHHHHHHHHHHhcCCCcchHHHHHHhhcccC
Confidence            4799999999999999999999999876644 679999998754321                            12357


Q ss_pred             CCCChHHHHHHHHHcCCCCCCCcCCCC---CCC--------------------------C--------------------
Q psy7460          74 DGCFFEPSIEYTHQAGLESEKDYPYKN---ANG--------------------------E--------------------  104 (1026)
Q Consensus        74 ~GG~~~~a~~~~~~~Gv~~e~~~PY~~---~~~--------------------------~--------------------  104 (1026)
                      +||.-..+...+.++|+++.++||-+.   ...                          .                    
T Consensus       146 DGG~w~m~~nli~KYG~VPk~~ypet~~~s~~s~~mN~~L~~kLre~a~~Lr~~~~~~~~~~~~~~~~~~~~~~~vy~il  225 (458)
T d3gcba_         146 DGGQYSMFLNLVKKYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQREIFRLM  225 (458)
T ss_dssp             SCBCHHHHHHHHHHHCCCBGGGSCSCSHHHHBCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHcCCCcHhhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999998752   100                          0                    


Q ss_pred             -----cccCCCCcc--------------------------------------------cceeeccceee---------ec
Q psy7460         105 -----KFKCAYDKS--------------------------------------------KVKLFTGKDFL---------HF  126 (1026)
Q Consensus       105 -----~~~c~~~~~--------------------------------------------~~~~~~~~~~~---------~~  126 (1026)
                           .++...+..                                            ..+.+......         +.
T Consensus       226 ~~~LG~PP~~~~e~F~~~y~dkd~k~~~~~~TP~~F~~~~v~~~~~dyV~L~n~P~~py~k~y~v~~~~Nv~~G~~~~y~  305 (458)
T d3gcba_         226 SLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKIDRLGNVLGGDAVIYL  305 (458)
T ss_dssp             HHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTSCCCTTSEEEEECCTTSCTTCEEEESSCCSSTTCCCEEEE
T ss_pred             HHHcCCCCCCCCcceeEEecccccceeecCCCCHHHHHHHhCccccceeeecccccCccceEEEecccccccCCcceEEe
Confidence                 011100000                                            00011111000         00


Q ss_pred             -CcH----HHHHHHHHhcCCcEEEEecccccccCCceeecCCCC-----------------CCCCCCCcEEEEEEeeec-
Q psy7460         127 -NGS----ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET-----------------CSPYDLGHAVLLVGYGKQ-  183 (1026)
Q Consensus       127 -~~~----~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~-----------------~~~~~~~HAV~IVGyG~~-  183 (1026)
                       -..    +.+++.|.++.||-.+.++..+.+.+.|+.......                 ......+|||+|+|++.+ 
T Consensus       306 Nvp~d~lk~~~~~sL~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~D~  385 (458)
T d3gcba_         306 NVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDE  385 (458)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECT
T ss_pred             ecCHHHHHHHHHHHHhcCCcEEEEecccccccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEEcC
Confidence             012    355667888999999999876666777776532111                 122357899999999854 


Q ss_pred             CCc--cEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         184 DNI--PYWLVRNSWGPIGPDEGFFKIER  209 (1026)
Q Consensus       184 ~g~--~yWIVrNSWG~~WG~~Gyf~i~~  209 (1026)
                      ++.  .+|+|+||||+.+|++|||.|.-
T Consensus       386 ~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         386 TSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             TTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             CCCccceEEEEeccCCCCCCCceEEecH
Confidence            443  69999999999999999999875

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.43  E-value=4.1e-13  Score=151.44  Aligned_cols=187  Identities=19%  Similarity=0.220  Sum_probs=127.1

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHhc-CCceecCHHHHHhhcC----------------------------CCCCC
Q psy7460         754 TGPAGDQAACGSCWAFSIAGMLEGQYAIKT-GKLVEFSKSQLVECAK----------------------------QCSGC  804 (1026)
Q Consensus       754 v~pv~dQg~CGSCWAfa~~~ale~~~~i~~-~~~~~lS~Q~lvdC~~----------------------------~~~gC  804 (1026)
                      .+||+||+.-|.||.||++..|+..+..+. .+...||+-+|+-.++                            ...-+
T Consensus        66 ~~~vtnQ~~SGrCW~FA~ln~lr~~~~~~~~~~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~  145 (458)
T d3gcba_          66 STPVTNQKSSGRAWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTE  145 (458)
T ss_dssp             CCSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTC
T ss_pred             CCCcccCCCCcccHHHhChHHHHHHHHHHcCCCCeeecHHHHHHhhHHHHHHHHHHHHHHhcCCCcchHHHHHHhhcccC
Confidence            579999999999999999999999987653 4679999987654321                            12357


Q ss_pred             CCCCchHHHHHHHHcCCCCCCcccCcC---CCC---------------------------C-------------------
Q psy7460         805 DGCFFEPSIEYTHQAGLESEKDYPYKN---ANG---------------------------E-------------------  835 (1026)
Q Consensus       805 ~GG~~~~a~~y~~~~Gi~~e~~yPY~~---~~~---------------------------~-------------------  835 (1026)
                      +||.-..+...++++|++.++.||=+.   ...                           .                   
T Consensus       146 DGG~w~m~~nli~KYG~VPk~~ypet~~~s~~s~~mN~~L~~kLre~a~~Lr~~~~~~~~~~~~~~~~~~~~~~~vy~il  225 (458)
T d3gcba_         146 DGGQYSMFLNLVKKYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQREIFRLM  225 (458)
T ss_dssp             SCBCHHHHHHHHHHHCCCBGGGSCSCSHHHHBCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHcCCCcHhhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence            899989988889999999999997642   110                           0                   


Q ss_pred             -----cccc--c------C-CC-----------------------------------CcceEEecc-----------eee
Q psy7460         836 -----KFKC--A------Y-DK-----------------------------------SKVKLFTGK-----------DFL  855 (1026)
Q Consensus       836 -----~~~C--~------~-~~-----------------------------------~~~~~~~~~-----------~~~  855 (1026)
                           .++.  .      . ++                                   ...+.|.+.           .|.
T Consensus       226 ~~~LG~PP~~~~e~F~~~y~dkd~k~~~~~~TP~~F~~~~v~~~~~dyV~L~n~P~~py~k~y~v~~~~Nv~~G~~~~y~  305 (458)
T d3gcba_         226 SLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKIDRLGNVLGGDAVIYL  305 (458)
T ss_dssp             HHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTSCCCTTSEEEEECCTTSCTTCEEEESSCCSSTTCCCEEEE
T ss_pred             HHHcCCCCCCCCcceeEEecccccceeecCCCCHHHHHHHhCccccceeeecccccCccceEEEecccccccCCcceEEe
Confidence                 0010  0      0 00                                   000000000           011


Q ss_pred             ecCh---HHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCCCCCC-----------------CCCCCCeEEEEEEeeec-
Q psy7460         856 HFNG---SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC-----------------SPYDLGHAVLLVGYGKQ-  914 (1026)
Q Consensus       856 ~~~~---~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~~~~c-----------------~~~~~~HaV~iVGyg~~-  914 (1026)
                      .++-   .+.+.++|..+.||..+.+++.+...+.||........                 .....+|||+|||++.+ 
T Consensus       306 Nvp~d~lk~~~~~sL~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~D~  385 (458)
T d3gcba_         306 NVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDE  385 (458)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECT
T ss_pred             ecCHHHHHHHHHHHHhcCCcEEEEecccccccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEEcC
Confidence            1110   24555567788899999999877777888865321000                 11357899999999864 


Q ss_pred             CCc--cEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         915 DNI--PYWLVRNSWGPIGPDEGFFKIER  940 (1026)
Q Consensus       915 ~g~--~yWivkNSWG~~WGe~Gy~~i~r  940 (1026)
                      +|.  .+|+|+||||+.+|++||+.|+.
T Consensus       386 ~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         386 TSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             TTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             CCCccceEEEEeccCCCCCCCceEEecH
Confidence            443  69999999999999999999985

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.2e-12  Score=140.86  Aligned_cols=186  Identities=18%  Similarity=0.243  Sum_probs=126.1

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCcccCHHHHHhhc----------------CC--------------CCC
Q psy7460          24 GPAGDQADCGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECA----------------KQ--------------CSG   72 (1026)
Q Consensus        24 ~pV~nQg~cGsCwAfA~~~~le~~~~i~~~-~~~~LS~q~l~~c~----------------~~--------------~~g   72 (1026)
                      +||.||+.-|-||.||+...|+..+..+.+ +.++||+.+|+--+                ..              ...
T Consensus        61 ~~vtnQk~SGrCW~Fa~LN~lR~~~~k~~~~~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p~  140 (453)
T d2cb5a_          61 KPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPA  140 (453)
T ss_dssp             SSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTT
T ss_pred             CccccCCCCcccHHHhChHHHHHHHHHHcCCCCeehhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhhCCC
Confidence            699999999999999999999999877654 67999999875221                00              135


Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCcCCCCCCCCc-----------------------------------------------
Q psy7460          73 CDGCFFEPSIEYTHQAGLESEKDYPYKNANGEK-----------------------------------------------  105 (1026)
Q Consensus        73 C~GG~~~~a~~~~~~~Gv~~e~~~PY~~~~~~~-----------------------------------------------  105 (1026)
                      .+||.-..+...+.++|+++.++||-+......                                               
T Consensus       141 ~DGGqw~m~~nli~KYGvVPk~~~pet~~s~~s~~~n~~L~~kLr~~a~~Lr~~~~~~~~~~~l~~~~~~~~~~iy~iL~  220 (453)
T d2cb5a_         141 NDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVC  220 (453)
T ss_dssp             CSCBCHHHHHHHHHHHCCCBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHcCcccHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999865322100                                               


Q ss_pred             -----ccCCC-------------------------------C--------------cccceeeccceeeec---------
Q psy7460         106 -----FKCAY-------------------------------D--------------KSKVKLFTGKDFLHF---------  126 (1026)
Q Consensus       106 -----~~c~~-------------------------------~--------------~~~~~~~~~~~~~~~---------  126 (1026)
                           ++-..                               +              ....+.+.+......         
T Consensus       221 ~~LG~PP~~F~~~y~dk~k~~~~~~~~TP~~F~~~~v~~~~nlddyV~L~~dPr~~~py~k~y~ve~~~Nv~~G~~~~y~  300 (453)
T d2cb5a_         221 ICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVEYLSNMVGGRKTLYN  300 (453)
T ss_dssp             HHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEETTCCSSTTCCCCCEE
T ss_pred             HHcCCCCCeEEEEeecCCCceeecCCCCHHHHHHHhcccccCccceEEEEecCCCCCCCCceEEecccccccCCcceEEE
Confidence                 00000                               0              000001111100000         


Q ss_pred             C-c----HHHHHHHHHhcCCcEEEEecccccccCCceeecC----------CC--C-------CCCCCCCcEEEEEEeee
Q psy7460         127 N-G----SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN----------DE--T-------CSPYDLGHAVLLVGYGK  182 (1026)
Q Consensus       127 ~-~----~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~----------~~--~-------~~~~~~~HAV~IVGyG~  182 (1026)
                      + .    .+.++++|.++-||-.+-++..+.+.+.|+....          +.  .       ......+|||+|+|.+.
T Consensus       301 Nvp~d~l~~~~~~sL~~g~~VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv~l  380 (453)
T d2cb5a_         301 NQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSE  380 (453)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEE
T ss_pred             ecCHHHHHHHHHHHHhcCCcEEEEcccchhcchhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEEEec
Confidence            0 1    2456778889999999998865555555654320          00  0       12345689999999984


Q ss_pred             ---cCCc-cEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         183 ---QDNI-PYWLVRNSWGPIGPDEGFFKIER  209 (1026)
Q Consensus       183 ---~~g~-~yWIVrNSWG~~WG~~Gyf~i~~  209 (1026)
                         .+|+ .+|+|+||||+.-|++|||.|.-
T Consensus       381 ~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         381 KDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             CTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             ccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence               4555 79999999999999999999875

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4e-11  Score=134.27  Aligned_cols=187  Identities=18%  Similarity=0.233  Sum_probs=125.6

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHhcC-CceecCHHHHHhhc--------------------C----------CCC
Q psy7460         754 TGPAGDQAACGSCWAFSIAGMLEGQYAIKTG-KLVEFSKSQLVECA--------------------K----------QCS  802 (1026)
Q Consensus       754 v~pv~dQg~CGSCWAfa~~~ale~~~~i~~~-~~~~lS~Q~lvdC~--------------------~----------~~~  802 (1026)
                      .+||.||+.-|-||.||+...|+..+..+.+ +...||+.+|+--+                    .          ...
T Consensus        60 ~~~vtnQk~SGrCW~Fa~LN~lR~~~~k~~~~~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p  139 (453)
T d2cb5a_          60 GKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNP  139 (453)
T ss_dssp             CSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCT
T ss_pred             CCccccCCCCcccHHHhChHHHHHHHHHHcCCCCeehhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhhCC
Confidence            3699999999999999999999999887644 67999988765211                    0          023


Q ss_pred             CCCCCCchHHHHHHHHcCCCCCCcccCcCCCCCc-----------------------------------c----------
Q psy7460         803 GCDGCFFEPSIEYTHQAGLESEKDYPYKNANGEK-----------------------------------F----------  837 (1026)
Q Consensus       803 gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~~-----------------------------------~----------  837 (1026)
                      -++||.-..+...++++|++..++||=+.....+                                   .          
T Consensus       140 ~~DGGqw~m~~nli~KYGvVPk~~~pet~~s~~s~~~n~~L~~kLr~~a~~Lr~~~~~~~~~~~l~~~~~~~~~~iy~iL  219 (453)
T d2cb5a_         140 ANDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVV  219 (453)
T ss_dssp             TCSCBCHHHHHHHHHHHCCCBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHcCcccHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999853211000                                   0          


Q ss_pred             -cc----c---------------------------------CCC--------------CcceEEecc-----------ee
Q psy7460         838 -KC----A---------------------------------YDK--------------SKVKLFTGK-----------DF  854 (1026)
Q Consensus       838 -~C----~---------------------------------~~~--------------~~~~~~~~~-----------~~  854 (1026)
                       .|    +                                 .+.              ...+.|.+.           .|
T Consensus       220 ~~~LG~PP~~F~~~y~dk~k~~~~~~~~TP~~F~~~~v~~~~nlddyV~L~~dPr~~~py~k~y~ve~~~Nv~~G~~~~y  299 (453)
T d2cb5a_         220 CICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVEYLSNMVGGRKTLY  299 (453)
T ss_dssp             HHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEETTCCSSTTCCCCCE
T ss_pred             HHHcCCCCCeEEEEeecCCCceeecCCCCHHHHHHHhcccccCccceEEEEecCCCCCCCCceEEecccccccCCcceEE
Confidence             00    0                                 000              000000000           01


Q ss_pred             eecCh---HHHHHHHHHhcCCEEEEEeCCCCcccCCcceeCC----------CC-C--------CCCCCCCeEEEEEEee
Q psy7460         855 LHFNG---SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKN----------DE-T--------CSPYDLGHAVLLVGYG  912 (1026)
Q Consensus       855 ~~~~~---~~~ik~~l~~~GPV~v~i~~~~f~~y~~Gi~~~~----------~~-~--------c~~~~~~HaV~iVGyg  912 (1026)
                      ..++=   .+.+.++|..+-||-.+-+++.+..-+.||....          +. .        -.....+|||+|+|++
T Consensus       300 ~Nvp~d~l~~~~~~sL~~g~~VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv~  379 (453)
T d2cb5a_         300 NNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVS  379 (453)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEE
T ss_pred             EecCHHHHHHHHHHHHhcCCcEEEEcccchhcchhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEEEe
Confidence            11110   2455667888789999999976666666764321          00 0        0124568999999998


Q ss_pred             e---cCCc-cEEEEEcCCCCCCCCCcEEEEEe
Q psy7460         913 K---QDNI-PYWLVRNSWGPIGPDEGFFKIER  940 (1026)
Q Consensus       913 ~---~~g~-~yWivkNSWG~~WGe~Gy~~i~r  940 (1026)
                      .   ++|+ .+|+|+||||+.-|++||+.|+.
T Consensus       380 l~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         380 EKDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             ECTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             cccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence            5   4565 79999999999999999999985

>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain SspB
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.74  E-value=0.097  Score=48.00  Aligned_cols=134  Identities=20%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHcC--------CCcccCHHHHHhhcCCCCCCCCCChHHHHHHHHHcCCCCCCCcCC
Q psy7460          27 GDQADCGSCWAFSIAGMLEGQYAIKTG--------KLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPY   98 (1026)
Q Consensus        27 ~nQg~cGsCwAfA~~~~le~~~~i~~~--------~~~~LS~q~l~~c~~~~~gC~GG~~~~a~~~~~~~Gv~~e~~~PY   98 (1026)
                      ..||+-|-|-+|+.++.|..+..-...        -...||.|.|-.        .|-++.+.++|.+.+|-        
T Consensus        25 EtQg~nsWCAgytmaalLnat~nt~~Y~A~~iMR~lyPn~s~~~l~~--------~~~tp~qmI~Yg~SqGr--------   88 (183)
T d1pxva_          25 EQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPN--------CATFPNQMIEYGKSQGR--------   88 (183)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGG--------CCBCHHHHHHHHHHTTC--------
T ss_pred             HhcCcccHHHHHHHHHHHHhhccCCcCCHHHHHHHhCCCcccchhhh--------cCCCHHHHHHHHhccCC--------
Confidence            579999999999998877765521111        113344443332        25566777777776551        


Q ss_pred             CCCCCCcccCCCCcccceeeccceeeecCcHHHHHHHHHhcCCcEEEEecccccccCCceeecCCCCCCCCCCCcEEEEE
Q psy7460          99 KNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV  178 (1026)
Q Consensus        99 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~~~~~~~~HAV~IV  178 (1026)
                                          .........+.+.+++++.++-++.+.-..-             +........+||++||
T Consensus        89 --------------------~~~~~~gm~sy~~Vd~lt~~Nkgi~il~~~v-------------~~~~n~~hagHAmaV~  135 (183)
T d1pxva_          89 --------------------DIHYQEGVPSYNQVDQLTKDNVGIMILAQSV-------------SQNPNDPHLGHALAVV  135 (183)
T ss_dssp             --------------------CCEEEESCCCHHHHHHHHHTTCCEEEEEECC-------------CSSTTSCCCEEEEEEE
T ss_pred             --------------------CchhhcCCCcHHHHHHHhhcCCcEEEEeeee-------------ccCCCCcccceeEEEe
Confidence                                1112222346688999999998876543210             0112334679999999


Q ss_pred             EeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcc
Q psy7460         179 GYGKQDNIPYWLVRNSWGPIGPDEGFFKIERGNNAC  214 (1026)
Q Consensus       179 GyG~~~g~~yWIVrNSWG~~WG~~Gyf~i~~g~n~~  214 (1026)
                      |+.+-++.+--|+-|-|     ++||.-++...|..
T Consensus       136 GnA~~nn~~~ii~WNPW-----D~g~~~qda~Sn~I  166 (183)
T d1pxva_         136 GNAKINDQEKLIYWNPW-----DTELSIQDADSSLL  166 (183)
T ss_dssp             EEEEETTEEEEEEECTT-----CSSCEEEETTCCEE
T ss_pred             eeeeEcCceEEEEeCCC-----cCCccccCCccCeE
Confidence            99988888888888999     45888877766543

>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain StpA
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.96  E-value=0.5  Score=42.78  Aligned_cols=133  Identities=17%  Similarity=0.294  Sum_probs=87.8

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHH--------HHcCCCcccCHHHHHhhcCCCCCCCCCChHHHHHHHHHcCCCCCCCcCC
Q psy7460          27 GDQADCGSCWAFSIAGMLEGQYA--------IKTGKLVEFSKSQLVECAKQCSGCDGCFFEPSIEYTHQAGLESEKDYPY   98 (1026)
Q Consensus        27 ~nQg~cGsCwAfA~~~~le~~~~--------i~~~~~~~LS~q~l~~c~~~~~gC~GG~~~~a~~~~~~~Gv~~e~~~PY   98 (1026)
                      ..||+-|-|-+|+.++.|..+..        |++--...||.|.|-.+        |-++.+.++|.+.+|--+      
T Consensus        15 EtQg~nsWCAgytmaalLnat~nt~~y~A~~iMr~lyPn~s~~~l~~~--------~~tp~qmi~Yg~sqGr~~------   80 (173)
T d1cv8a_          15 ETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFT--------GLTPREMIYFGQTQGRSP------   80 (173)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHC--------CCCHHHHHHHHHHTTCCC------
T ss_pred             HhcCcccHHHHHHHHHHHHHhhcCCCccHHHHHHHhCCCcchhhhhhc--------CCCHHHHHHHHHccCCCh------
Confidence            57999999999999888876642        22222367888888766        457778888888776321      


Q ss_pred             CCCCCCcccCCCCcccceeeccceeeecCcHHHHHHHHHhcCCcEEEEecccccccCCceeecCCCCCCCCCCCcEEEEE
Q psy7460          99 KNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLV  178 (1026)
Q Consensus        99 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~GPV~~~i~~~~~~~y~~gi~~~~~~~~~~~~~~HAV~IV  178 (1026)
                                            .........+++.+.+..+--+.+...  ..            ..+.....+||++||
T Consensus        81 ----------------------~~~n~m~sy~~vd~lt~~Nkgi~il~~--~v------------es~~g~h~~hAmaV~  124 (173)
T d1cv8a_          81 ----------------------QLLNRMTTYNEVDNLTKNNKGIAILGS--RV------------ESRNGMHAGHAMAVV  124 (173)
T ss_dssp             ----------------------EEESSCCCHHHHHHHHHTTCCEEEEEE--ES------------SCBTTBCCEEEEEEE
T ss_pred             ----------------------hhhcCCCchhhHHHHhhccCCcEeeee--cc------------cCCCCCccceeEEEe
Confidence                                  111112244566677766554433221  11            133344689999999


Q ss_pred             Eeeec-CCccEEEEEcCCCCCCCCCcEEEEEecCCcc
Q psy7460         179 GYGKQ-DNIPYWLVRNSWGPIGPDEGFFKIERGNNAC  214 (1026)
Q Consensus       179 GyG~~-~g~~yWIVrNSWG~~WG~~Gyf~i~~g~n~~  214 (1026)
                      |+.+- ++.+--+|-|-|-     +||.-++...|..
T Consensus       125 GnA~~nn~q~vi~~WNPWd-----~~~~~qda~Sn~I  156 (173)
T d1cv8a_         125 GNAKLNNGQEVIIIWNPWD-----NGFMTQDAKNNVI  156 (173)
T ss_dssp             EEEEETTSCEEEEEECTTC-----SSCEEEETTCCEE
T ss_pred             ecceecCCceEEEEeCCCc-----CCccccCCccCee
Confidence            99985 6688999999994     4888877766543

>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain StpA
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.81  E-value=3.9  Score=36.83  Aligned_cols=131  Identities=16%  Similarity=0.222  Sum_probs=82.6

Q ss_pred             CCCCCcchHHHHhHHHHHHHHHH--------HcCCCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhCCcCCCCCCc
Q psy7460         393 DQAACGSCWAFSIAGMLEGQYAI--------KTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDYP  463 (1026)
Q Consensus       393 ~Qg~CgSCwAfa~~~~~e~~~~i--------~~~~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~yp  463 (1026)
                      .||.-|=|-+|+.++.|-.+...        .+--...||.|+|-+|.          -.+ .-++|-+..|-..     
T Consensus        16 tQg~nsWCAgytmaalLnat~nt~~y~A~~iMr~lyPn~s~~~l~~~~----------~tp~qmi~Yg~sqGr~~-----   80 (173)
T d1cv8a_          16 TQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTG----------LTPREMIYFGQTQGRSP-----   80 (173)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHCC----------CCHHHHHHHHHHTTCCC-----
T ss_pred             hcCcccHHHHHHHHHHHHHhhcCCCccHHHHHHHhCCCcchhhhhhcC----------CCHHHHHHHHHccCCCh-----
Confidence            58888889999999988766332        22223578999998873          233 5677766544211     


Q ss_pred             ccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEecCccccccCCceeCCCCCCCCCCCCeEEEE
Q psy7460         464 YRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLL  543 (1026)
Q Consensus       464 Y~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~i  543 (1026)
                                             ......+..++..+.+..+--|++-...              ...|.....+||+.|
T Consensus        81 -----------------------~~~n~m~sy~~vd~lt~~Nkgi~il~~~--------------ves~~g~h~~hAmaV  123 (173)
T d1cv8a_          81 -----------------------QLLNRMTTYNEVDNLTKNNKGIAILGSR--------------VESRNGMHAGHAMAV  123 (173)
T ss_dssp             -----------------------EEESSCCCHHHHHHHHHTTCCEEEEEEE--------------SSCBTTBCCEEEEEE
T ss_pred             -----------------------hhhcCCCchhhHHHHhhccCCcEeeeec--------------ccCCCCCccceeEEE
Confidence                                   0011122345555555544333332221              234555578999999


Q ss_pred             EEeeec-CCccEEEEEcCCCCCCCCCcEEEEEecCCcc
Q psy7460         544 VGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERGNNAC  580 (1026)
Q Consensus       544 VGyG~~-~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~c  580 (1026)
                      |||.+- ++.+--+|=|-|-.     ||.-+....|..
T Consensus       124 ~GnA~~nn~q~vi~~WNPWd~-----~~~~qda~Sn~I  156 (173)
T d1cv8a_         124 VGNAKLNNGQEVIIIWNPWDN-----GFMTQDAKNNVI  156 (173)
T ss_dssp             EEEEEETTSCEEEEEECTTCS-----SCEEEETTCCEE
T ss_pred             eecceecCCceEEEEeCCCcC-----CccccCCccCee
Confidence            999985 56888888899976     888877766543

>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain SspB
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.79  E-value=2.7  Score=38.18  Aligned_cols=133  Identities=20%  Similarity=0.194  Sum_probs=85.0

Q ss_pred             CCCCCcchHHHHhHHHHHHHHHHHcC--------CCccCCHHHHHhhhcCCCCCCCCCCCc-hHHHHHHhCCcCCCCCCc
Q psy7460         393 DQAACGSCWAFSIAGMLEGQYAIKTG--------KLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDYP  463 (1026)
Q Consensus       393 ~Qg~CgSCwAfa~~~~~e~~~~i~~~--------~~~~lS~q~lvdC~~~~~gC~G~~G~~-~a~~~~~~~Gi~~e~~yp  463 (1026)
                      .||.-|=|-||+.++.|-.+..-..-        -...||.|.|-+|.          -.+ .-++|-+..|-       
T Consensus        26 tQg~nsWCAgytmaalLnat~nt~~Y~A~~iMR~lyPn~s~~~l~~~~----------~tp~qmI~Yg~SqGr-------   88 (183)
T d1pxva_          26 QQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCA----------TFPNQMIEYGKSQGR-------   88 (183)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGGCC----------BCHHHHHHHHHHTTC-------
T ss_pred             hcCcccHHHHHHHHHHHHhhccCCcCCHHHHHHHhCCCcccchhhhcC----------CCHHHHHHHHhccCC-------
Confidence            57888889999999988765443211        12457777776652          123 45666555431       


Q ss_pred             ccCCCCCccccccCCCCceeeecceeEecCCHHHHHHHHHcCCCEEEEEe-cCccccccCCceeCCCCCCCCCCCCeEEE
Q psy7460         464 YRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVL  542 (1026)
Q Consensus       464 Y~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gPv~v~i~-~~~~~~y~~Gi~~~~~~~c~~~~~~HaV~  542 (1026)
                                           .+......+..+..++.+..+-||+|.-. ++              ..-.....+||+.
T Consensus        89 ---------------------~~~~~~gm~sy~~Vd~lt~~Nkgi~il~~~v~--------------~~~n~~hagHAma  133 (183)
T d1pxva_          89 ---------------------DIHYQEGVPSYNQVDQLTKDNVGIMILAQSVS--------------QNPNDPHLGHALA  133 (183)
T ss_dssp             ---------------------CCEEEESCCCHHHHHHHHHTTCCEEEEEECCC--------------SSTTSCCCEEEEE
T ss_pred             ---------------------CchhhcCCCcHHHHHHHhhcCCcEEEEeeeec--------------cCCCCcccceeEE
Confidence                                 01112223466788888888888876332 21              1122346799999


Q ss_pred             EEEeeecCCccEEEEEcCCCCCCCCCcEEEEEecCCcccc
Q psy7460         543 LVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGI  582 (1026)
Q Consensus       543 iVGyG~~~g~~YWivkNSWG~~WGe~Gy~ri~r~~n~cgi  582 (1026)
                      ||||.+-++.+--|+=|-|-.     ||.-+....|...+
T Consensus       134 V~GnA~~nn~~~ii~WNPWD~-----g~~~qda~Sn~I~v  168 (183)
T d1pxva_         134 VVGNAKINDQEKLIYWNPWDT-----ELSIQDADSSLLHL  168 (183)
T ss_dssp             EEEEEEETTEEEEEEECTTCS-----SCEEEETTCCEEEE
T ss_pred             EeeeeeEcCceEEEEeCCCcC-----CccccCCccCeEee
Confidence            999998888877788898865     88888776665433