Psyllid ID: psy7562

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
MENIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTSSLVFEIIRGDSDDMFSINKGLKKK
cccccccccccEEEEEEEEEEccccccEEEEEEEEEEEEcccccccccccccccEEEEEEcccccccEEEEEEEEcccccccEEEEEEEEEEEEccccccccccccccEEEEEEcccccccEEEEEEEEEccccEEEEEEEEccccccEEEEccccEEEEccccccccccEEEEEEEEEccccccccccccEEEEEEEEcccccccEEEEEEEEEEcccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEccccccEEEccEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEccccccccccEEEEccccEEEEccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEcccccEEEccEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEccccccEEEEccEEEEEEccccccccccEEEEEEEEEEccccccEEEEEEEEEEEEEcccccccccccEEEEEccccccccEEEEEEEEEccEEEEEEEEccccccEEEccccccc
cccccccccHccccEEEEEccccccccccccEEEEEEEEccccccccccEcccccEEEccccccccEEEEEEcccccccccEEEEEEEEEEEEEEEcccccccccccEEEEEEccccccccEEEEEEEEcccccccEEEEEEcccccEEEEcccccEEEEEccccHHHcccEEEEEEEEcccccccccccEEEEEEEEEEcccccccEEccEEEEEcccccccccEEEEEEEEccccccccEEEEEEEcccccccccccccEEEcccccEEEEEHHcHHHcccEEEEEEEHccccccccccEEEEEEEEEEccccccEEEcccEEEEEcccccccEEEEEEEEEccccccEEEEEEcccccccccccEEEcccccEEEEccccccccccEEEEEEEEEEccccEccccEEEEEEEEcccccccEEcccEEEEEEEcccccccEEEEccEEcccccccEEEEEEEccccccccEEEcccccEEEEEccccHHHHccEEEEEEEEcccccccccEEEEEEEEEEccccccccccccccEEccccccccEEEEEEEEEccccEEEEEcccccccEEEEEcccccc
MENIIVFVAGQEFDLLVRatdhgspnqsstarVSIQVvrlpdesknpptikspdqrvevteNDAVGFLVALIQasdpdgdtLWYRIYVLHWeclpdesknpptikspdqrvevteNDAVGFLVALIQasdpdgdtlwyrivdgdpnstfsigndkgnVLLARRVDWETQAQYTLNISVSDgihewtgrhrpsairtvvnldheslprieFHVQvtdlgrprltsdTLAKVIVEVtdtndcppqfsqdvynvsILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLnsgetncshqwssrIWLHVTVVdvnehrpiltQSLYetnisesvpvgSEILKVaasdsdqesKVLYSIHHAQSPLSAALFRIDfhsgalsvaqpldreslSHHLLTIMARdqgtpakrnFARVSINvldsndhppefaTSLVkgrvfetsavgtNIVQVVAtdrdhgengvVTYSIAsgnignvftmdpilgtiqtarpldLSLMSEYMLLVKAtdqgapplaatvPVQIIVVMADNDPPRFAKAELAAELfeneppgtvvrhiearSTSSLVFEIIrgdsddmfsinkglkkk
MENIIVFVAGQEFDLLVRATdhgspnqsstarvsiqvvrlpdesknpptikspdqrveVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWEclpdesknpptIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGdpnstfsigndkgNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFhvqvtdlgrprltSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMArdqgtpakRNFARVSINvldsndhpPEFATSLVKGRVFETSAVGTNIVQvvatdrdhgeNGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTSSLVFeiirgdsddmfsinkglkkk
MENIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRfakaelaaelfenePPGTVVRHIEARSTSSLVFEIIRGDSDDMFSINKGLKKK
***IIVFVAGQEFDLLVRA******************************************NDAVGFLVALIQASDPDGDTLWYRIYVLHWECL*******************TENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKV**********VLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMAR*******RNFARVSINVLDS*****EFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFE****GTVVRHIEARSTSSLVFEIIRG***************
MENIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSG****SHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTSSLVFEIIRGDSDDMFS*NKG****
MENIIVFVAGQEFDLLVRAT***********RVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTSSLVFEIIRGDSDDMFSINKGLKKK
****IVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTSSLVFEIIRGDSDDMFSINKG****
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MENIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTSSLVFEIIRGDSDDMFSINKGLKKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query582 2.2.26 [Sep-21-2011]
Q9VW71 4705 Fat-like cadherin-related yes N/A 0.841 0.104 0.326 1e-70
Q14517 4588 Protocadherin Fat 1 OS=Ho yes N/A 0.316 0.040 0.466 2e-68
Q8R508 4555 Protocadherin Fat 3 OS=Ra no N/A 0.501 0.064 0.414 1e-62
Q8TDW7 4589 Protocadherin Fat 3 OS=Ho no N/A 0.501 0.063 0.401 4e-61
Q8BNA6 4555 Protocadherin Fat 3 OS=Mu no N/A 0.501 0.064 0.401 3e-60
Q9NYQ8 4349 Protocadherin Fat 2 OS=Ho no N/A 0.460 0.061 0.386 9e-44
O35161 3034 Cadherin EGF LAG seven-pa no N/A 0.914 0.175 0.274 2e-43
Q5F226 4351 Protocadherin Fat 2 OS=Mu no N/A 0.486 0.065 0.361 2e-42
Q9NYQ6 3014 Cadherin EGF LAG seven-pa no N/A 0.774 0.149 0.301 8e-42
O88277 4351 Protocadherin Fat 2 OS=Ra no N/A 0.460 0.061 0.375 3e-41
>sp|Q9VW71|FAT2_DROME Fat-like cadherin-related tumor suppressor homolog OS=Drosophila melanogaster GN=kug PE=2 SV=2 Back     alignment and function desciption
 Score =  268 bits (684), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 294/569 (51%), Gaps = 79/569 (13%)

Query: 15   LLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQA 74
            L V  +D+GSP  SST+R+ + V+ + D   N P     DQRV                 
Sbjct: 1264 LEVAISDNGSPVLSSTSRIVVSVLDIND---NSPEF---DQRV----------------- 1300

Query: 75   SDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGD 134
                     Y++ V             P+  + +Q +         F V  I +   +  
Sbjct: 1301 ---------YKVQV-------------PSSATVNQSI---------FQVHAIDSDSGENG 1329

Query: 135  TLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD-GIHEWTGRHRPSA 193
             + Y I  G   + F I + +G++ +A+ +D + +  + ++I   D GI + +   R + 
Sbjct: 1330 RITYSIKSGKGKNKFRIDSQRGHIHIAKPLDSDNE--FEIHIKAEDNGIPKKSQTARVNI 1387

Query: 194  IRTVVNLDHESLPRI-----EFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDV 248
            +   VN + ++ P I     E  V +T+  +P      L   I+ V D ND      Q  
Sbjct: 1388 VVVPVNPNSQNAPLIVRKTSENVVDLTENDKPGF----LVTQILAVDDDND------QLW 1437

Query: 249  YNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQ-LNSGETNCSHQWSSRIWLHV 307
            YN+S       +       QD  N +IL+  + +    Q  N   +     +++   L V
Sbjct: 1438 YNIS----NGNDDNTFYIGQD--NGNILLSKYLDYETQQSYNLTISVTDGTFTAFTNLLV 1491

Query: 308  TVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAAL 367
             V+D+N++ P   + +Y  NISE++   S I+++ A+D D++ K+ Y +H  Q P S AL
Sbjct: 1492 QVIDINDNPPQFAKDVYHVNISENIEEESVIMQLHATDRDEDKKLFYHLHATQDPSSLAL 1551

Query: 368  FRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFAT 427
            FRID  SG + V Q LD E  + H+L +  +DQG P KRN+A++ +NV D NDH PEF  
Sbjct: 1552 FRIDSISGNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTA 1611

Query: 428  SLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARP 487
             +++ +V E++A+G+ + +V A DRD G N  + YSI +GN+G+VF +DP  G I  A  
Sbjct: 1612 KIIQSKVPESAAIGSKLAEVRAIDRDSGHNAEIQYSIITGNVGSVFEIDPTFGIITLAGN 1671

Query: 488  LDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGT 547
            L+++ + EYML VKA D G PPL++ +PV IIV M++NDPP+F    +A E+FEN P GT
Sbjct: 1672 LNINKIQEYMLQVKAVDLGNPPLSSQIPVHIIVTMSENDPPKFPTNNIAIEIFENLPIGT 1731

Query: 548  VVRHIEARSTSSLVFEIIRGDSDDMFSIN 576
             V  + ARS+SS+ F II G+ ++ F IN
Sbjct: 1732 FVTQVTARSSSSIFFNIISGNINESFRIN 1760
Required for the planar polarity of actin filament orientation at the basal side of ovarian follicle cells. Required for proper egg chamber shape; elongation of the egg chamber during oogenesis.
Drosophila melanogaster (taxid: 7227)
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2 Back     alignment and function description
>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1 Back     alignment and function description
>sp|Q8TDW7|FAT3_HUMAN Protocadherin Fat 3 OS=Homo sapiens GN=FAT3 PE=2 SV=2 Back     alignment and function description
>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2 Back     alignment and function description
>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2 Back     alignment and function description
>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus GN=Celsr1 PE=2 SV=3 Back     alignment and function description
>sp|Q5F226|FAT2_MOUSE Protocadherin Fat 2 OS=Mus musculus GN=Fat2 PE=2 SV=1 Back     alignment and function description
>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens GN=CELSR1 PE=1 SV=1 Back     alignment and function description
>sp|O88277|FAT2_RAT Protocadherin Fat 2 OS=Rattus norvegicus GN=Fat2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
328703039 4140 PREDICTED: fat-like cadherin-related tum 0.238 0.033 0.539 3e-89
328703041 4147 PREDICTED: fat-like cadherin-related tum 0.238 0.033 0.539 4e-89
307210681 3435 Putative fat-like cadherin-related tumor 0.503 0.085 0.522 4e-89
332019420 3467 Putative fat-like cadherin-related tumor 0.219 0.036 0.566 6e-89
328790298 3599 PREDICTED: fat-like cadherin-related tum 0.503 0.081 0.519 4e-88
380020280 4753 PREDICTED: LOW QUALITY PROTEIN: fat-like 0.503 0.061 0.512 2e-87
350417212 4739 PREDICTED: fat-like cadherin-related tum 0.503 0.061 0.506 2e-86
340715254 3597 PREDICTED: fat-like cadherin-related tum 0.503 0.081 0.506 2e-86
307179930 3508 Putative fat-like cadherin-related tumor 0.503 0.083 0.503 2e-86
170048314 3527 cadherin [Culex quinquefasciatus] gi|167 0.312 0.051 0.555 2e-86
>gi|328703039|ref|XP_003242076.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog isoform 1 [Acyrthosiphon pisum] gi|328703043|ref|XP_003242078.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 150/278 (53%), Positives = 218/278 (78%)

Query: 299  WSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHH 358
            +++   L V+V D+NE+RP  +Q LYE N++E+  +GS ++++ A+D DQ+ ++LY IH 
Sbjct: 1496 YTTATQLFVSVKDINEYRPKFSQDLYEVNVTENAEIGSPVVRLMATDDDQDLRLLYGIHS 1555

Query: 359  AQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDS 418
            AQ   S   F +D+ SG +SV QPLDRES++ H LT++ +DQ TP+K+NFARV I V+DS
Sbjct: 1556 AQHVNSVKSFAVDYQSGVVSVQQPLDRESIARHELTVVVKDQSTPSKKNFARVVITVIDS 1615

Query: 419  NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPI 478
            NDH PEF++++V+GRVFET+AVGT+++Q++ATD+DHGEN  V+Y I SGNIGNVF++D  
Sbjct: 1616 NDHAPEFSSNIVQGRVFETTAVGTSVLQLLATDKDHGENAAVSYQIISGNIGNVFSIDSK 1675

Query: 479  LGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAE 538
            LGT+   + LD+S+ SEY L+VKA D G+PPL +T+PV I+VVMADN PP+F   E +AE
Sbjct: 1676 LGTLHLMKELDMSVSSEYTLIVKAVDSGSPPLYSTIPVYIMVVMADNAPPKFNNPEESAE 1735

Query: 539  LFENEPPGTVVRHIEARSTSSLVFEIIRGDSDDMFSIN 576
            ++ENEP GTVV+ ++ARSTSSL+FE++ GD+  +F++N
Sbjct: 1736 IYENEPSGTVVKRLQARSTSSLLFELVEGDTYSLFAVN 1773

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328703041|ref|XP_003242077.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307210681|gb|EFN87104.1| Putative fat-like cadherin-related tumor suppressor-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332019420|gb|EGI59904.1| Putative fat-like cadherin-related tumor suppressor-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328790298|ref|XP_394631.4| PREDICTED: fat-like cadherin-related tumor suppressor homolog [Apis mellifera] Back     alignment and taxonomy information
>gi|380020280|ref|XP_003694018.1| PREDICTED: LOW QUALITY PROTEIN: fat-like cadherin-related tumor suppressor homolog [Apis florea] Back     alignment and taxonomy information
>gi|350417212|ref|XP_003491311.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog, partial [Bombus impatiens] Back     alignment and taxonomy information
>gi|340715254|ref|XP_003396132.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog [Bombus terrestris] Back     alignment and taxonomy information
>gi|307179930|gb|EFN68065.1| Putative fat-like cadherin-related tumor suppressor-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|170048314|ref|XP_001870677.1| cadherin [Culex quinquefasciatus] gi|167870411|gb|EDS33794.1| cadherin [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
UNIPROTKB|Q14517 4588 FAT1 "Protocadherin Fat 1" [Ho 0.463 0.058 0.448 6.7e-77
UNIPROTKB|E2R353 4591 FAT1 "Uncharacterized protein" 0.463 0.058 0.448 5.9e-76
UNIPROTKB|F6XXM1 5056 FAT1 "Uncharacterized protein" 0.463 0.053 0.448 9.3e-76
UNIPROTKB|E1BKL9 4587 FAT1 "Uncharacterized protein" 0.463 0.058 0.448 8.3e-75
UNIPROTKB|F1LP84 4586 Fat1 "Protein Fat1" [Rattus no 0.463 0.058 0.444 3.5e-74
UNIPROTKB|F1LR23 4589 Fat1 "Protein Fat1" [Rattus no 0.463 0.058 0.444 3.5e-74
UNIPROTKB|F1SER9 4587 FAT1 "Uncharacterized protein" 0.463 0.058 0.444 4.5e-74
FB|FBgn0261574 4705 kug "kugelei" [Drosophila mela 0.907 0.112 0.324 2.1e-68
UNIPROTKB|F1NWW5 4592 FAT1 "Uncharacterized protein" 0.467 0.059 0.437 3.3e-68
UNIPROTKB|E9PQ73 4439 FAT3 "Protocadherin Fat 3" [Ho 0.463 0.060 0.403 7.3e-66
UNIPROTKB|Q14517 FAT1 "Protocadherin Fat 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 622 (224.0 bits), Expect = 6.7e-77, Sum P(4) = 6.7e-77
 Identities = 121/270 (44%), Positives = 177/270 (65%)

Query:   307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAA 366
             + V+D N+HRP  + S YE  I E     +EIL+++A D D+++K++Y++  ++ PLS  
Sbjct:  1444 IKVIDTNDHRPQFSTSKYEVVIPEDTAPETEILQISAVDQDEKNKLIYTLQSSRDPLSLK 1503

Query:   367 LFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFA 426
              FR+D  +G+L  ++ LD E++  H LT+M RDQ  P KRNFAR+ +NV D+NDH P F 
Sbjct:  1504 KFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHAPWFT 1563

Query:   427 TSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTAR 486
              S  KGRV+E++AVG+ ++QV A D+D G+N  V YSI SGNIGN F +DP+LG+I+TA+
Sbjct:  1564 ASSYKGRVYESAAVGSVVLQVTALDKDKGKNAEVLYSIESGNIGNSFMIDPVLGSIKTAK 1623

Query:   487 PLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRXXXXXXXXXXXXXXPPG 546
              LD S  +EY L+VKATD+G+PP++    V+I V +ADN  P+                G
Sbjct:  1624 ELDRSNQAEYDLMVKATDKGSPPMSEITSVRIFVTIADNASPKFTSKEYSVELSETVSIG 1683

Query:   547 TVVRHIEARSTSSLVFEIIRGDSDDMFSIN 576
             + V  + A S SS+V+EI  G++ D F IN
Sbjct:  1684 SFVGMVTAHSQSSVVYEIKDGNTGDAFDIN 1713
GO:0005509 "calcium ion binding" evidence=IEA
GO:0007156 "homophilic cell adhesion" evidence=IEA
GO:0030027 "lamellipodium" evidence=IEA
GO:0030175 "filopodium" evidence=IEA
GO:0005911 "cell-cell junction" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0048471 "perinuclear region of cytoplasm" evidence=IDA
GO:0007015 "actin filament organization" evidence=ISS
GO:0016337 "cell-cell adhesion" evidence=ISS
GO:0007163 "establishment or maintenance of cell polarity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0016477 "cell migration" evidence=ISS
GO:0005887 "integral to plasma membrane" evidence=TAS
GO:0007155 "cell adhesion" evidence=TAS
GO:0007267 "cell-cell signaling" evidence=TAS
GO:0009653 "anatomical structure morphogenesis" evidence=TAS
UNIPROTKB|E2R353 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XXM1 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BKL9 FAT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LP84 Fat1 "Protein Fat1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LR23 Fat1 "Protein Fat1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SER9 FAT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0261574 kug "kugelei" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWW5 FAT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PQ73 FAT3 "Protocadherin Fat 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 9e-26
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 8e-25
pfam0002892 pfam00028, Cadherin, Cadherin domain 1e-21
smart0011281 smart00112, CA, Cadherin repeats 5e-19
smart0011281 smart00112, CA, Cadherin repeats 2e-17
pfam0002892 pfam00028, Cadherin, Cadherin domain 2e-16
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 1e-15
pfam0002892 pfam00028, Cadherin, Cadherin domain 9e-10
smart0011281 smart00112, CA, Cadherin repeats 9e-10
cd0003198 cd00031, CA_like, Cadherin repeat-like domain 5e-08
smart0011281 smart00112, CA, Cadherin repeats 8e-04
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information 
 Score =  100 bits (252), Expect = 9e-26
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 324 YETNISESVPVGSEILKVAASDSDQE--SKVLYSIHHAQSPLSAALFRIDFHSGALSVAQ 381
           YE ++ E+ P G+ +L V+A+D D     +V YSI    S     LF ID  +G ++ A+
Sbjct: 2   YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSI---VSGNEDGLFSIDPSTGEITTAK 58

Query: 382 PLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDH 421
           PLDRE  S + LT+ A D G P   + A V+I VLD ND+
Sbjct: 59  PLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information
>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain Back     alignment and domain information
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 582
KOG4289|consensus 2531 100.0
KOG4289|consensus 2531 100.0
KOG1219|consensus 4289 100.0
KOG1219|consensus 4289 100.0
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 100.0
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 99.96
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 99.73
KOG1834|consensus 952 99.68
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 99.65
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.61
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.5
KOG1834|consensus 952 99.46
PF0826684 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad 98.17
PF0875890 Cadherin_pro: Cadherin prodomain like; InterPro: I 97.43
PF0826684 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad 97.12
PF0875890 Cadherin_pro: Cadherin prodomain like; InterPro: I 96.96
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 96.82
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 95.94
TIGR0196599 VCBS_repeat VCBS repeat. This domain of about 100 95.84
TIGR0196599 VCBS_repeat VCBS repeat. This domain of about 100 94.87
PF13750158 Big_3_3: Bacterial Ig-like domain (group 3) 94.67
TIGR00845 928 caca sodium/calcium exchanger 1. This model is spe 88.88
TIGR00845 928 caca sodium/calcium exchanger 1. This model is spe 88.52
PF0534549 He_PIG: Putative Ig domain; InterPro: IPR008009 Th 85.4
PF0534549 He_PIG: Putative Ig domain; InterPro: IPR008009 Th 84.89
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 82.4
>KOG4289|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-85  Score=700.82  Aligned_cols=566  Identities=30%  Similarity=0.476  Sum_probs=503.8

Q ss_pred             cceecccCCEEEEEEEEEECCCCCceeEEEEEEEEEecCCCCCCCCcccCCCceEEEeCCCCCCcEEEEEEEEcCCCC--
Q psy7562           3 NIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGD--   80 (582)
Q Consensus         3 ~~ldyE~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~d~ND~~~~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~--   80 (582)
                      +.||.|+...|.|.|+|.|.|.|++|++++|.|.|.|.||   |.|+|++..|.-++.||.++|+.|++|+|+|.|.+  
T Consensus       225 ~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nD---hsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~N  301 (2531)
T KOG4289|consen  225 KSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTND---HSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPN  301 (2531)
T ss_pred             hhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCC---CCcccchhHHHHHHhhccccCceEEEEEeccCCCCCC
Confidence            6799999999999999999999999999999999999988   78999999999999999999999999999999976  


Q ss_pred             -eEEEEE-------------------------------EEEEe-----------------EEecCCCCCCCeeeCCCeeE
Q psy7562          81 -TLWYRI-------------------------------YVLHW-----------------ECLPDESKNPPTIKSPDQRV  111 (582)
Q Consensus        81 -~~~y~i-------------------------------~~~~~-----------------~~v~d~nd~~P~f~~~~~~~  111 (582)
                       .+.|++                               +.|+.                 ..|.|+|||+|.|.+..|.+
T Consensus       302 ani~Yrl~eg~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvv  381 (2531)
T KOG4289|consen  302 ANIRYRLLEGNAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVV  381 (2531)
T ss_pred             CceEEEecCCCccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEE
Confidence             467765                               12222                 24889999999999999999


Q ss_pred             EEecCCCCCcEEEEEEEEcCCC---CeEEEEEEeCCCCCCeEEeCCcceEEEcccCCcccccEEEEEEEEeeCCccccc-
Q psy7562         112 EVTENDAVGFLVALIQASDPDG---DTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTG-  187 (582)
Q Consensus       112 ~v~E~~~~g~~v~~v~A~D~D~---~~~~y~i~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~l~V~a~D~~~~~~~-  187 (582)
                      .|.|+..++++|.+|+|+|.|.   +.++|+|.+|+..+.|.||..||+|.+..+||+|.. .|++.|+|.|++.++.. 
T Consensus       382 qv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPpLsn  460 (2531)
T KOG4289|consen  382 QVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPPLSN  460 (2531)
T ss_pred             EecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCCccC
Confidence            9999999999999999999996   789999999999999999999999999999999998 99999999999865431 


Q ss_pred             ------------ccCC-----------------------------------------------------ceeEEeeeccc
Q psy7562         188 ------------RHRP-----------------------------------------------------SAIRTVVNLDH  202 (582)
Q Consensus       188 ------------~~~p-----------------------------------------------------~~~~~~~~ld~  202 (582)
                                  +|.|                                                     |+|...+.|||
T Consensus       461 ~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG~~pf~I~~~SG~Itvtk~ldr  540 (2531)
T KOG4289|consen  461 TSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAGVGPFQINNGSGWITVTKELDR  540 (2531)
T ss_pred             CCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeeccCCCeeEecCCceEEEeecccc
Confidence                        2222                                                     46778899999


Q ss_pred             cccceEEEEEEEEeCCCCCcccccEEEEEEEEeeecCCCCccCCCceEEEEEeecccceEEEEEEe--------eeeeEE
Q psy7562         203 ESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ--------DVYNVS  274 (582)
Q Consensus       203 e~~~~~~~~v~~~D~g~p~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~~~~~~~~~~~~~~~--------~~~~~~  274 (582)
                      |..+.|.|-|.++|+|.|++..+  ..|.|.+.|+|||.|.|.+..|++.+.|....+..++++..        .+|++.
T Consensus       541 Et~~~ysl~V~ard~gtp~l~ts--tsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~~s~ityqi~  618 (2531)
T KOG4289|consen  541 ETVEHYSLGVEARDHGTPPLSTS--TSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDANSVITYQIT  618 (2531)
T ss_pred             cccceEEEEEEEcCCCCCccccc--ceEEEEecccCCCCCccccCceEEEecCCccccceEEEEEEeccccccceEEEec
Confidence            99999999999999999999875  67899999999999999999999999999988888876642        244442


Q ss_pred             E---------EeeeeeeEEEEEc--cc--------CcccCCCceeEEEEEEEEEEeCCCCCCeeccCeeEEEEECCCCCC
Q psy7562         275 I---------LVPTFTNVAVLQL--NS--------GETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVG  335 (582)
Q Consensus       275 ~---------~~~~~~~~~~~~~--~~--------~~~~~~~~~s~~~~v~I~V~DvNd~~P~f~~~~~~~~v~E~~~~g  335 (582)
                      -         ......++..+.+  +.        .-....+.+..++.|.|.|.|.|-+.|.|...+|+++|+|..|.|
T Consensus       619 g~ntrn~Fsi~si~g~Glitlalp~dkKqe~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G  698 (2531)
T KOG4289|consen  619 GGNTRNRFSISSIGGGGLITLALPLDKKQERQYVLAVTATDGTLQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLG  698 (2531)
T ss_pred             CCcccccceeeccCCcceEEeecchhhcccceEEEEEEecCCccccceEEEEEeeecccCCcccccCCeeEeeccCCcCC
Confidence            1         1111111111110  00        001123567788899999999999999999999999999999999


Q ss_pred             cEEEEEEEEeCC--CCCeEEEEEEeCCCCCCccCEEEECcccEEEECccCCCCCccEEEEEEEEEeCCCCCceeEEEEEE
Q psy7562         336 SEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSI  413 (582)
Q Consensus       336 t~v~~v~a~D~D--~~~~v~y~i~~~~~~~~~~~F~i~~~tG~i~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~~~v~I  413 (582)
                      +.|..+.|+|.|  +|++|+| |.+.      ..|+||+++|.+++...||||.+-.|.+.|.|.|.+.|++.++++|.|
T Consensus       699 ~tvvtlsasd~D~geNARI~y-~led------~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D~~~pq~adtttveV  771 (2531)
T KOG4289|consen  699 TTVVTLSASDEDTGENARITY-ILED------EAFRIDPDSGAIYTQAELDYEDQVTYTLAITARDNGIPQKADTTTVEV  771 (2531)
T ss_pred             ceeEEEecccCCCCccceEEE-Eecc------cceeecCCCCceEEeeeeecccceeeEeeeeecCCCCCCcCccEEEEE
Confidence            999999999999  6799999 5443      359999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCeEecceeeEEEecCCCCCcEEEEEEEEECCCCCCcEEEEEEEeC-CCCCceEEeCCCeEEEEcccCCcCC
Q psy7562         414 NVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASG-NIGNVFTMDPILGTIQTARPLDLSL  492 (582)
Q Consensus       414 ~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~y~l~~~-~~~~~F~Id~~tG~i~~~~~ld~e~  492 (582)
                      .|.|+|||+|+|..+.|.++|.|++|++|.+++|.|+|+|.|.|+++.|.+..+ +..+.|.|++.+|.|++.+.||||.
T Consensus       772 ~v~diNDnaPqf~assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~p~~F~IEptSGviRtl~rLdRE~  851 (2531)
T KOG4289|consen  772 LVNDINDNAPQFLASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDDGPGDFYIEPTSGVIRTLRRLDREN  851 (2531)
T ss_pred             EeecccccCcccchhhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCCCCCceEEccCcceeehhhhhcchh
Confidence            999999999999999999999999999999999999999999999999999864 3457999999999999999999999


Q ss_pred             CceEEEEEEEEECCCCCceeeEEEEEEEEecCCCCCeeecCceEEEEecCCCCCeEEEEEEeeeCC-----ceEEEEEeC
Q psy7562         493 MSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTS-----SLVFEIIRG  567 (582)
Q Consensus       493 ~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~~-----~i~y~i~~g  567 (582)
                      ...|.|.+.|+|.|.|++++.+.|+|+|.|+|||||+|.+.+|...|.||.++|..++++.|.|++     .|+|+|..|
T Consensus       852 ~avy~L~a~avDrg~p~ls~~~eItvtvldvNDnaPvfe~~e~e~~I~enspvgs~va~i~a~dpdEG~NA~IsYqIvgg  931 (2531)
T KOG4289|consen  852 VAVYVLAAYAVDRGNPPLSAPVEITVTVLDVNDNAPVFEQDELELFIEENSPVGSVVALITADDPDEGPNAHISYQIVGG  931 (2531)
T ss_pred             eeEEEEEEEEeeCCCCCcCCceEEEEEEEecCCCCCCCCCcceeeEEeecCccceeeEEEEccCCCcCCcceEEEeeccC
Confidence            999999999999999999999999999999999999999999999999999999999999999964     599999999


Q ss_pred             CCCCcEEEecCCCC
Q psy7562         568 DSDDMFSINKGLKK  581 (582)
Q Consensus       568 ~~~~~F~Id~~tGe  581 (582)
                      +....|.++..+||
T Consensus       932 ~d~~~fq~de~~~~  945 (2531)
T KOG4289|consen  932 NDPELFQLDEFSGE  945 (2531)
T ss_pred             ccHHHHHHHHhhhh
Confidence            99999999998885

>KOG4289|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion Back     alignment and domain information
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>TIGR01965 VCBS_repeat VCBS repeat Back     alignment and domain information
>TIGR01965 VCBS_repeat VCBS repeat Back     alignment and domain information
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3) Back     alignment and domain information
>TIGR00845 caca sodium/calcium exchanger 1 Back     alignment and domain information
>TIGR00845 caca sodium/calcium exchanger 1 Back     alignment and domain information
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins Back     alignment and domain information
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
1l3w_A 546 C-Cadherin Ectodomain Length = 546 2e-17
1q55_A 880 W-Shaped Trans Interactions Of Cadherins Model Base 2e-17
2a62_A322 Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length 3e-16
2a62_A322 Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length 4e-11
3q2v_A 550 Crystal Structure Of Mouse E-Cadherin Ectodomain Le 6e-16
1edh_A226 E-Cadherin Domains 1 And 2 In Complex With Calcium 6e-16
3q2l_A213 Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 6e-16
3lne_A213 Crystal Structure Of E-Cadherin Ec12 K14e Length = 8e-16
1q1p_A212 E-Cadherin Activation Length = 212 8e-16
3q2n_A213 Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213 8e-16
3qrb_A213 Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt 8e-16
2qvf_B213 Mouse E-cadherin Domains 1,2 Length = 213 9e-16
3lng_A215 Crystal Structure Of E-Cadherin Ec12 Aa Extension L 9e-16
1ff5_A219 Structure Of E-Cadherin Double Domain Length = 219 9e-16
3lnf_A213 Crystal Structure Of E-Cadherin Ec12 K14ew2a Length 1e-15
3lnh_A213 Crystal Structure Of E-Cadherin Ec12 W2a Length = 2 1e-15
3lni_A213 Crystal Structure Of E-Cadherin Ec12 E89a Length = 1e-15
3mvs_A210 Structure Of The N-Terminus Of Cadherin 23 Length = 2e-15
2wcp_A214 Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length 3e-15
4aqe_A214 Crystal Structure Of Deafness Associated Mutant Mou 3e-15
2o72_A213 Crystal Structure Analysis Of Human E-Cadherin (1-2 5e-15
2wd0_A214 Crystal Structure Of Nonsyndromic Deafness (Dfnb12) 2e-14
3q2w_A 559 Crystal Structure Of Mouse N-Cadherin Ectodomain Le 2e-14
1ncj_A215 N-Cadherin, Two-Domain Fragment Length = 215 1e-13
2qvi_A215 Crystal Structure Of N-Cadherin Domains Ec12 Length 2e-13
2a4e_A215 Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length 3e-13
1suh_A146 Amino-Terminal Domain Of Epithelial Cadherin In The 1e-12
2yst_A119 Solution Structure Of The Third Cadherin Domain Fro 1e-11
2yst_A119 Solution Structure Of The Third Cadherin Domain Fro 6e-06
3k5s_A217 Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len 3e-11
2ee0_A114 Solution Structures Of The Ca Domain Of Human Proto 3e-10
2ee0_A114 Solution Structures Of The Ca Domain Of Human Proto 2e-04
3ppe_A203 Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng 6e-09
3lnd_A207 Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2 7e-09
3k5r_A218 Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt 2e-08
3ubh_A419 Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le 7e-08
2omx_B108 Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX 2e-04
2omw_B105 Crystal Structure Of Inla S192n Y369s/mec1 Complex 4e-04
1nch_A110 Structural Basis Of Cell-Cell Adhesion By Cadherins 5e-04
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 13/196 (6%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMA-RDQ 400
           S+ D+ +KV YSI    A +P    +FRI++ +G + V +PLDRE    ++L+  A  + 
Sbjct: 32  SNKDRFNKVYYSITGQGADNP-PQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN 90
Query: 401 GTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHG---EN 457
           G+P +     ++INV+D ND+ P+F   + +G V E    GT ++ V ATD D      N
Sbjct: 91  GSPVEEPM-EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLN 149
Query: 458 GVVTYSIASGN----IGNVFTMDPILGTIQ-TARPLDLSLMSEYMLLVKATDQGAPPLAA 512
           GV++YSI   +    I N+FT++   G I      LD     EY L V+ATD     L+ 
Sbjct: 150 GVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 209
Query: 513 TVPVQIIVVMADNDPP 528
                I +  A+++ P
Sbjct: 210 EGKAIIQITDANDNAP 225
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880 Back     alignment and structure
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322 Back     alignment and structure
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322 Back     alignment and structure
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550 Back     alignment and structure
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226 Back     alignment and structure
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 Back     alignment and structure
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213 Back     alignment and structure
>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212 Back     alignment and structure
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213 Back     alignment and structure
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213 Back     alignment and structure
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213 Back     alignment and structure
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215 Back     alignment and structure
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219 Back     alignment and structure
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213 Back     alignment and structure
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213 Back     alignment and structure
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213 Back     alignment and structure
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210 Back     alignment and structure
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214 Back     alignment and structure
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214 Back     alignment and structure
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213 Back     alignment and structure
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214 Back     alignment and structure
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559 Back     alignment and structure
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215 Back     alignment and structure
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215 Back     alignment and structure
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215 Back     alignment and structure
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The Calcium Bound State, Nmr, 20 Structures Length = 146 Back     alignment and structure
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119 Back     alignment and structure
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119 Back     alignment and structure
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217 Back     alignment and structure
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114 Back     alignment and structure
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114 Back     alignment and structure
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203 Back     alignment and structure
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207 Back     alignment and structure
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218 Back     alignment and structure
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419 Back     alignment and structure
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 108 Back     alignment and structure
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex Length = 105 Back     alignment and structure
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins Length = 110 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 3e-67
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 4e-66
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 2e-14
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 2e-11
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 1e-63
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 1e-59
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 2e-51
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-15
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-13
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 2e-12
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 1e-11
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 1e-06
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 3e-63
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 2e-62
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 2e-60
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 7e-59
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 1e-37
1q55_A880 EP-cadherin, C-cadherin; trans interaction, desmos 3e-16
1q55_A880 EP-cadherin, C-cadherin; trans interaction, desmos 1e-11
1q55_A880 EP-cadherin, C-cadherin; trans interaction, desmos 3e-09
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 6e-63
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 5e-60
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 1e-54
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 5e-16
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 6e-13
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 8e-10
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 4e-62
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 9e-57
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 4e-52
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 2e-37
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 2e-16
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 6e-06
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 3e-58
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 8e-30
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 2e-29
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 6e-23
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 3e-12
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 4e-08
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 1e-55
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 4e-52
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 4e-34
3ubf_A 316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 5e-21
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 2e-19
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 6e-12
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 5e-55
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 9e-53
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 1e-33
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 7e-16
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 2e-11
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 1e-05
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 1e-52
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 2e-25
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 3e-25
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 3e-15
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 7e-11
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 2e-51
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 2e-28
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 2e-26
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 8e-18
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 1e-11
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 7e-50
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 2e-26
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 6e-24
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 1e-17
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 1e-09
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 7e-49
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 1e-25
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 2e-23
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 7e-16
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 1e-11
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 7e-48
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 2e-25
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 1e-21
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 9e-18
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 1e-09
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 1e-47
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 7e-29
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 2e-21
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 2e-17
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 7e-08
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 1e-07
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 5e-46
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 4e-28
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 4e-15
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 3e-14
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 3e-30
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 9e-29
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 6e-13
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 7e-05
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 5e-28
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 3e-26
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 5e-08
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 1e-04
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 4e-23
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 6e-16
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 2e-11
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 4e-23
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 4e-19
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 8e-13
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 4e-22
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 2e-18
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 1e-12
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 7e-21
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 2e-14
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 1e-10
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 1e-20
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 9e-16
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 1e-11
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 1e-19
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 1e-15
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 5e-08
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 2e-17
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 4e-14
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 2e-07
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 2e-17
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 9e-16
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 1e-05
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
 Score =  227 bits (580), Expect = 3e-67
 Identities = 109/586 (18%), Positives = 176/586 (30%), Gaps = 164/586 (27%)

Query: 11  QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
             F L   A D       +   + I V+               D       ND       
Sbjct: 72  ARFHLRAHAVDINGNQVENPIDIVINVI---------------DM------ND------- 103

Query: 71  LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
                                        N P          V E    G  V  + A D
Sbjct: 104 -----------------------------NRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 134

Query: 131 PDGDT-----LWYRIVDGDPNST----FSIGNDKGNVLLARRVDWETQAQYTLNISVSDG 181
            D        L YRI+   P++     F+I                              
Sbjct: 135 ADDPNALNGMLRYRILSQAPSTPSPNMFTI------------------------------ 164

Query: 182 IHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLGRPRLTS-DTLAKVIVEVTDTND 239
            +  TG      I TV   LD E + +    +Q TD+           A  ++ VTD ND
Sbjct: 165 -NNETG-----DIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVND 218

Query: 240 CPPQFSQDVYNVSI-------LVPTFT-----------NVAVLQFSQDVYNV--SILVPT 279
            PP+F+   +   +       +V   T             A  + S        +IL   
Sbjct: 219 NPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDP 278

Query: 280 FTNVAVLQLNSG---ETN------------------CSHQWSSRIWLHVTVVDVNEHRPI 318
            +N  ++ +      ETN                    H   S   + VTV+DVNE+ P 
Sbjct: 279 NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PY 337

Query: 319 LTQSLYETNISESVPVGSEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRIDFHSGA 376
              +       E +  G+ +  + A D D   +  + Y+     +       +ID  +G 
Sbjct: 338 FAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANW----LKIDPVNGQ 393

Query: 377 LSVAQPLDRESL----SHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKG 432
           ++    LDRES     + +  T +A D G P       + I +LD ND+ P+      + 
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQ--EA 451

Query: 433 RVFETSAVGTNIVQVVATDRDHGENG---VVTYSIASGNIGNVFTMDPILGTI-QTARPL 488
              ET     N + + A D D   N         ++   I   +T++ + G   Q    +
Sbjct: 452 ETCETP--EPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKI 509

Query: 489 DLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAE 534
                  Y + +  TD G PP +    +++ V   D++        
Sbjct: 510 KFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHH 555
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100 Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100 Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99 Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99 Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99 Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99 Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99 Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99 Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99 Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99 Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99 Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98 Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98 Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98 Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105 Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105 Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query582
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 100.0
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 100.0
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 100.0
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 100.0
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 100.0
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 100.0
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 100.0
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 100.0
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 100.0
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 100.0
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 100.0
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 100.0
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 100.0
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 100.0
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 100.0
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 100.0
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 100.0
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 100.0
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 100.0
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 100.0
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.97
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.96
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.94
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.93
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.91
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.9
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.85
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.84
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.81
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.8
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.76
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 99.74
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 99.73
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.71
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 99.68
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 99.68
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 99.67
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 99.67
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 99.67
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 99.66
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 99.66
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 99.66
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 99.66
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 99.65
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 99.5
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 99.42
1op4_A159 Neural-cadherin; beta sandwich, cadherin-like doma 93.35
3rb5_A298 Na/Ca exchange protein; CBD12, calcium binding and 91.93
3rb5_A 298 Na/Ca exchange protein; CBD12, calcium binding and 89.88
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 89.21
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 86.65
1op4_A159 Neural-cadherin; beta sandwich, cadherin-like doma 86.24
2kpn_A103 Bacillolysin; solution structure, BIG_3 domain, PF 84.67
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 84.11
3ead_A137 Na/Ca exchange protein; CBD1, calcium regulation, 80.32
3ead_A137 Na/Ca exchange protein; CBD1, calcium regulation, 80.07
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.3e-67  Score=577.44  Aligned_cols=409  Identities=25%  Similarity=0.328  Sum_probs=362.8

Q ss_pred             CCcceecccCCEEEEEEEEEECCCCCceeEEEEEEEEEecCCCCCCCCcccCCCceEEEeCCCCCCcEEEEEEEEcCCCC
Q psy7562           1 MENIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGD   80 (582)
Q Consensus         1 ~~~~ldyE~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~d~ND~~~~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~   80 (582)
                      +.++||||....|.|+|+|+|+|+|++++++.|.|.|.|+||   |+|.|.+..|.+.|+||+++|+.|++|.|+|+|.|
T Consensus        62 ~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvND---n~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g  138 (559)
T 3q2w_A           62 VTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMND---NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP  138 (559)
T ss_dssp             ECSCCCTTTCSEEEEEEEEEETTSCEEEEEEEEEEEEECCCC---CCCEESCSEEEEEEETTCCTTCEEEECCEECSSCT
T ss_pred             ECCccCCCCCceEEEEEEEEECCCCccceeEEEEEEEEeCCC---CCCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCC
Confidence            368999999999999999999999999999999999999888   89999999999999999999999999999999965


Q ss_pred             eEEEEEEEEEeEEecCCCCCCCeeeCCCeeEEEecCCCCCcEEEEEEEEcCCCCeEEEEEEeCCC----CCCeEEeCCcc
Q psy7562          81 TLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDP----NSTFSIGNDKG  156 (582)
Q Consensus        81 ~~~y~i~~~~~~~v~d~nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~y~i~~~~~----~~~F~I~~~tG  156 (582)
                      .                                                 ..++.++|+|.++..    .+.|+|++.+|
T Consensus       139 ~-------------------------------------------------~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG  169 (559)
T 3q2w_A          139 N-------------------------------------------------ALNGMLRYRILSQAPSTPSPNMFTINNETG  169 (559)
T ss_dssp             T-------------------------------------------------SGGGCCEEEEEEEESCCSCTTCEEECTTTC
T ss_pred             C-------------------------------------------------CCceEEEEEEecCCCCCCCcceEEEeCCce
Confidence            1                                                 002568899876543    26899999999


Q ss_pred             eEEEcc-cCCcccccEEEEEEEEeeCCcccccccCCceeEEeeeccccccceEEEEEEEEeCCCCCcccccEEEEEEEEe
Q psy7562         157 NVLLAR-RVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVT  235 (582)
Q Consensus       157 ~i~~~~-~LD~E~~~~~~l~V~a~D~~~~~~~~~~p~~~~~~~~ld~e~~~~~~~~v~~~D~g~p~~~~~~~~~v~I~V~  235 (582)
                      .|++.+ +||||+...|.|.|+|+|+++..                                                  
T Consensus       170 ~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p--------------------------------------------------  199 (559)
T 3q2w_A          170 DIITVAAGLDREKVQQYTLIIQATDMEGNP--------------------------------------------------  199 (559)
T ss_dssp             EEEECCSCCCTTTCCEEEEEEEEEHHHHCT--------------------------------------------------
T ss_pred             EEEEEeccCCcccCCEEEEEEEEEECCCCC--------------------------------------------------
Confidence            999987 99999999999999999976422                                                  


Q ss_pred             eecCCCCccCCCceEEEEEeecccceEEEEEEeeeeeEEEEeeeeeeEEEEEcccCcccCCCceeEEEEEEEEEEeCCCC
Q psy7562         236 DTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEH  315 (582)
Q Consensus       236 DvNDn~P~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNd~  315 (582)
                                                                                  .++++++++|.|+|.|+|||
T Consensus       200 ------------------------------------------------------------~~~~s~t~~v~I~V~DvNDn  219 (559)
T 3q2w_A          200 ------------------------------------------------------------TYGLSNTATAVITVTDVNDN  219 (559)
T ss_dssp             ------------------------------------------------------------TTCCEEEEEEEEEEECCSCS
T ss_pred             ------------------------------------------------------------CCCccceEEEEEEEEeCCCC
Confidence                                                                        12356788899999999999


Q ss_pred             CCeeccCeeEEEEECCCCCCcEEEEEEEEeCCC----CCeEEEEEEeCCCCCCccCEEE----ECcccEEEECccCCCCC
Q psy7562         316 RPILTQSLYETNISESVPVGSEILKVAASDSDQ----ESKVLYSIHHAQSPLSAALFRI----DFHSGALSVAQPLDRES  387 (582)
Q Consensus       316 ~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~----~~~v~y~i~~~~~~~~~~~F~i----~~~tG~i~~~~~lD~E~  387 (582)
                      +|.|....|.+.|+|+. +|+.|+++.|+|+|.    ++.++|+|..++   ..++|.|    +..+|.|++.++||||.
T Consensus       220 ~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~---~~~~F~I~~~~~~~~G~i~~~~~LD~E~  295 (559)
T 3q2w_A          220 PPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGD---PTGRFAILTDPNSNDGLVTVVKPIDFET  295 (559)
T ss_dssp             CCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESC---TTCCEEEEECTTTCEEEEEECSCCCTTT
T ss_pred             CCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCC---CCCceEEEecCCCCcEEEEeCCCCCCcc
Confidence            99999999999999997 799999999999995    357999998875   3579999    47899999999999999


Q ss_pred             ccEEEEEEEEEeCC------CCCceeEEEEEEEEEecCCCCCeEecceeeEEEecCCCCCcEEEEEEEEECCCCCCcEEE
Q psy7562         388 LSHHLLTIMARDQG------TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVT  461 (582)
Q Consensus       388 ~~~~~l~v~a~D~~------~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~  461 (582)
                      ...|.|+|.|+|++      .|+++++++|+|.|.|+|| +|.|....|.+.|.|+.++|+.|++|.|+|+|.|.|+.++
T Consensus       296 ~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i~  374 (559)
T 3q2w_A          296 NRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIR  374 (559)
T ss_dssp             CSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCEE
T ss_pred             CceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCceE
Confidence            99999999999974      2568899999999999999 6999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCceEEeCCCeEEEEcccCCcCCC----ceEEEEEEEEECCCCCceeeEEEEEEEEecCCCCCeeecCceEE
Q psy7562         462 YSIASGNIGNVFTMDPILGTIQTARPLDLSLM----SEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAELAA  537 (582)
Q Consensus       462 y~l~~~~~~~~F~Id~~tG~i~~~~~ld~e~~----~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~  537 (582)
                      |+|.+ +..++|.|++.+|.|++.+.||||..    ..|.|+|.|+|+|.|+++++++|.|.|.|+|||+|.|....+  
T Consensus       375 Ysi~~-~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p~~ss~~~v~I~V~DvNDn~P~f~~~~~--  451 (559)
T 3q2w_A          375 YTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEA--  451 (559)
T ss_dssp             EEEEE-CTTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSSCCEEEEEEEEEEECCSCCCCEESCTTC--
T ss_pred             EEEcc-CCccceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCCCcceEEEEEEEEEEEccCCCCcccCCce--
Confidence            99986 45689999999999999999999976    899999999999999999999999999999999999986654  


Q ss_pred             EEecCCCCCeEEEEEEeeeC------CceEEEEEeC--CCCCcEEEecCCCC
Q psy7562         538 ELFENEPPGTVVRHIEARST------SSLVFEIIRG--DSDDMFSINKGLKK  581 (582)
Q Consensus       538 ~v~E~~~~g~~v~~v~a~D~------~~i~y~i~~g--~~~~~F~Id~~tGe  581 (582)
                      .+.|+  .|..+++|.|.|.      +.++|+|..+  +..+.|+|++.+|+
T Consensus       452 ~v~e~--~~~~v~~v~A~D~D~~~n~~~~~ysl~~~~~~~~~~f~i~~~~G~  501 (559)
T 3q2w_A          452 ETCET--PEPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGD  501 (559)
T ss_dssp             CCCSC--CCTTCEEECEECSCCTTSSSSCEEECCSSSHHHHHHEEEEECSSS
T ss_pred             EEeec--CCCcEEEEEEEcCCCCCCCCCEEEEEcCCCCccCCCeEEEecCCC
Confidence            46788  4555789999984      2599999853  23678999999996
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1 Back     alignment and structure
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Back     alignment and structure
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1 Back     alignment and structure
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579} Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0 Back     alignment and structure
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 582
d1l3wa4107 b.1.6.1 (A:327-433) C-cadherin ectodomain {African 7e-14
d1l3wa4107 b.1.6.1 (A:327-433) C-cadherin ectodomain {African 7e-13
d1l3wa4107 b.1.6.1 (A:327-433) C-cadherin ectodomain {African 1e-06
d2omzb1104 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human 6e-13
d2omzb1104 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human 4e-10
d2omzb1104 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human 8e-04
d1l3wa1100 b.1.6.1 (A:1-100) C-cadherin ectodomain {African c 9e-13
d1l3wa1100 b.1.6.1 (A:1-100) C-cadherin ectodomain {African c 2e-09
d1l3wa1100 b.1.6.1 (A:1-100) C-cadherin ectodomain {African c 1e-04
d1l3wa2113 b.1.6.1 (A:101-213) C-cadherin ectodomain {African 9e-13
d1l3wa2113 b.1.6.1 (A:101-213) C-cadherin ectodomain {African 2e-12
d1l3wa2113 b.1.6.1 (A:101-213) C-cadherin ectodomain {African 2e-05
d1ncia_102 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 1e-12
d1ncia_102 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 2e-08
d1edha2112 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse 1e-11
d1edha2112 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse 3e-11
d1edha2112 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse 2e-04
d1ncja2114 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu 8e-11
d1ncja2114 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu 1e-09
d1ncja2114 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu 7e-06
d1op4a_136 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 9e-11
d1op4a_136 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 2e-06
d1op4a_136 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 2e-05
d1l3wa3113 b.1.6.1 (A:214-326) C-cadherin ectodomain {African 9e-11
d1l3wa3113 b.1.6.1 (A:214-326) C-cadherin ectodomain {African 5e-10
d1l3wa3113 b.1.6.1 (A:214-326) C-cadherin ectodomain {African 6e-06
d1l3wa5107 b.1.6.1 (A:434-540) C-cadherin ectodomain {African 3e-05
d1l3wa5107 b.1.6.1 (A:434-540) C-cadherin ectodomain {African 7e-04
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 65.8 bits (159), Expect = 7e-14
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 420 DHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPIL 479
           +  P F  ++ +  V E  + G  I+ +VA D D  +   ++Y I   +     T++   
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDN 59

Query: 480 GTIQTARPLD----LSLMSEYMLLVKATDQGAPPLAATVPVQIIV 520
           G +     LD        + Y +++  TD G      T  + + V
Sbjct: 60  GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHV 104
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100 Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100 Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100 Back     information, alignment and structure
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query582
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 99.82
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 99.82
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 99.8
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 99.8
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 99.79
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.77
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.77
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 99.75
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.73
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.71
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 99.69
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 99.66
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 99.59
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 99.53
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.52
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 99.51
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 99.5
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 99.49
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.47
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 99.46
d1u2ca1103 Dystroglycan, N-terminal domain {Mouse (Mus muscul 91.04
d1u2ca1103 Dystroglycan, N-terminal domain {Mouse (Mus muscul 89.58
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.82  E-value=1.1e-20  Score=159.47  Aligned_cols=105  Identities=34%  Similarity=0.470  Sum_probs=96.6

Q ss_pred             cCCCCCeEecceeeEEEecCCCCCcEEEEEEEEECCCC---CCcEEEEEEEeCCC----CCceEEeCCCeEEEEc-ccCC
Q psy7562         418 SNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHG---ENGVVTYSIASGNI----GNVFTMDPILGTIQTA-RPLD  489 (582)
Q Consensus       418 vNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~---~n~~v~y~l~~~~~----~~~F~Id~~tG~i~~~-~~ld  489 (582)
                      .|||+|+|.+..|.+.|+|++++|+.|+++.|+|+|.+   .|+.++|+|..++.    .++|.|++.+|.|++. +.||
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD   80 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD   80 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCC
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccC
Confidence            59999999999999999999999999999999999976   47889999987543    3689999999999885 6799


Q ss_pred             cCCCceEEEEEEEEECCCCCceeeEEEEEEEEe
Q psy7562         490 LSLMSEYMLLVKATDQGAPPLAATVPVQIIVVM  522 (582)
Q Consensus       490 ~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  522 (582)
                      ||....|.|+|+|+|.|+|+++++++|.|+|.|
T Consensus        81 ~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          81 REKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             TTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             cccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            999999999999999999999999999999986
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure