Psyllid ID: psy7597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVFGDKVLN
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccEEEcccEEEEEEccccEEEEEEccccEEEEccEEEEEcccccccccccccccccccccHHHHHHHcccHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHccHHHHHHHHHcccccHHHHHcccccEcccccHHHHHHHHHHHHHHHccccEEEEEEcccEcccEEEEEccEEEEEccHHcccccEEEEcccccEEEEccccccccccccccccEEHHEEEcccEEcccccccccccccccHHHHHHHHHHccccHHHHHHccEEccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mttlkrphsrsashqklgldIEELEAIEedaglgngglgrLAACFLDSMATLGLSAYGYECFMMVLIYTGRiketlqpqeatLHQKVTVLFEIaggrktetvpalsgqrqkhetlapftglafykannfvsskapgiwqssktapQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVFGDKVLN
Flexible Loop (DISEMBL)
mttlkrphsrsashqklgLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTetvpalsgqrqkHETLAPFTGLAFYKANNFVSSkapgiwqssktAPQNLLKTYLKFESNTEHCMALGRVIGTSAALfksrqvfgdkvln
Low Complexity Region (SEG)
MTTLKRPHSRSASHQKlgldieeleaieedaglgngglgrlaaCFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVFGDKVLN
Disordered region (IsUnstruct)
***********************LEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTETV**********ETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVF******
Disordered Region (DISOPRED)
MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVFGD****
Disordered Region (DISEMBL)
***************KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTE***********HETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVFGDKVLN
Disordered Region (DISPRO)
MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVFGD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVIGTSAALFKSRQVFGDKVLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
P53537	842	Alpha-glucan phosphorylas	N/A	N/A	0.484	0.108	0.416	6e-12
Q9SD76	841	Alpha-glucan phosphorylas	yes	N/A	0.228	0.051	0.697	4e-11
P32811	838	Alpha-glucan phosphorylas	N/A	N/A	0.484	0.108	0.416	5e-11
Q9LIB2	962	Alpha-glucan phosphorylas	no	N/A	0.425	0.083	0.425	9e-11
Q9LKJ3	832	Alpha-glucan phosphorylas	N/A	N/A	0.648	0.146	0.326	3e-10
Q00766	853	Glycogen phosphorylase 1	yes	N/A	0.234	0.051	0.636	4e-10
P53535	974	Alpha-1,4 glucan phosphor	N/A	N/A	0.234	0.045	0.659	5e-10
P27598	955	Alpha-1,4 glucan phosphor	N/A	N/A	0.239	0.047	0.622	1e-09
Q9XTL9	844	Glycogen phosphorylase OS	yes	N/A	0.345	0.077	0.676	2e-09
P04045	966	Alpha-1,4 glucan phosphor	N/A	N/A	0.239	0.046	0.6	3e-09

>sp|P53537|PHSH_VICFA Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 58/108 (53%), Gaps = 17/108 (15%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYG------YECFMMVLIY 68
           +K GL++EE+   E+DA LGNGGLGRLA+CFLDSMATL L A+G      Y  F  ++  
Sbjct: 119 RKFGLELEEITEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQIITK 178

Query: 69  TGRIK------ETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQ 110
            G+ +      E   P E   H    VL+ I    + E  P   G RQ
Sbjct: 179 EGQEEVAEDWLEKFSPWEIVRHD---VLYPIRFFGQVEVNP--DGSRQ 221

The H isoform exhibits higher affinity for branched polyglucans such as soluble starch or glycogen.
Vicia faba (taxid: 3906)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1

>sp|Q9SD76|PHS2_ARATH Alpha-glucan phosphorylase 2, cytosolic OS=Arabidopsis thaliana GN=PHS2 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 36/43 (83%)

Query: 17  LGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           LG ++EE+   E+DA LGNGGLGRLA+CFLDSMATL L A+GY
Sbjct: 118 LGYELEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGY 160

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P32811|PHSH_SOLTU Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 17/108 (15%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYG------YECFMMVLIY 68
            KLG  +EE+   E+DA LGNGGLGRLA+CFLDSMATL L A+G      Y  F  ++  
Sbjct: 113 NKLGQQLEEVVEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQLITK 172

Query: 69  TGRIK------ETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQ 110
            G+ +      E   P E   H    V+F I      E +P  SG R+
Sbjct: 173 AGQEEVPEDWLEKFSPWEIVRHD---VVFPIRFFGHVEVLP--SGSRK 215

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9LIB2|PHS1_ARATH Alpha-glucan phosphorylase 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 49/80 (61%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKE 74
           ++LG D+E + + E D  LGNGGLGRLA+CFLDSMATL   A+GY       ++  RI +
Sbjct: 182 KRLGFDLESVASQEPDPALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITK 241

Query: 75  TLQPQEATLHQKVTVLFEIA 94
             Q + A    +++  +EI 
Sbjct: 242 DGQEEAAEDWLELSNPWEIV 261

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9LKJ3|PHSH_WHEAT Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 25/147 (17%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIK- 73
           +K G ++E +   E DA LGNGGLGRLA+CFLDSMATL L ++GY       ++  RI  
Sbjct: 107 KKFGYELEAIAGQERDAALGNGGLGRLASCFLDSMATLNLPSWGYGLRYRYGLFKQRIAK 166

Query: 74  -----------ETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKH-----ETLAP 117
                      +   P E   H    V++ I      E  P   G+R+         LA 
Sbjct: 167 EGQEEIAEDWLDKFSPWEIVRHD---VVYPIRFFGHVEISP--DGKRKWAGGEVLNALAY 221

Query: 118 FTGLAFYKANNFVSSKAPGIWQSSKTA 144
              +  YK  N +S +   +W ++ TA
Sbjct: 222 DVPIPGYKTKNAISLR---LWDATATA 245

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q00766|PHS1_DICDI Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 36/44 (81%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           +LG ++E+L   E+DA LGNGGLGRLAACF+DS+ATL   A+GY
Sbjct: 131 ELGFEMEDLYEEEKDAALGNGGLGRLAACFMDSLATLKYPAWGY 174

May provide energy to overcome environmental stresses.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P53535|PHSL2_SOLTU Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 34/44 (77%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           KLG  +E++   E DA LGNGGLGRLA+CFLDSMATL   A+GY
Sbjct: 169 KLGYSLEDVARQEPDAALGNGGLGRLASCFLDSMATLNYPAWGY 212

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P27598|PHSL_IPOBA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
            KLG ++E + + E DA LGNGGLGRLA+CFLDS+ATL   A+GY
Sbjct: 158 NKLGHNLENVASKEPDAALGNGGLGRLASCFLDSLATLNYPAWGY 202

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Ipomoea batatas (taxid: 4120)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9XTL9|PYG_DROME Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 50/65 (76%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKET 75
           +LGLDIE LE +EEDAGLGNGGLGRLAACFLDSMATLGL+AYGY       I+  +IK  
Sbjct: 115 QLGLDIENLEEMEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFAQKIKNG 174

Query: 76  LQPQE 80
            Q +E
Sbjct: 175 EQVEE 179

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P04045|PHSL1_SOLTU Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           + LG ++E + + E DA LGNGGLGRLA+CFLDS+ATL   A+GY
Sbjct: 165 KNLGHNLENVASQEPDAALGNGGLGRLASCFLDSLATLNYPAWGY 209

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
298292535	833	glycogen/starch/alpha-glucan phosphoryla	0.590	0.133	0.380	7e-12
394987982	829	hypothetical protein SCD_00381 [Sulfuric	0.319	0.072	0.6	1e-11
217976412	836	glycogen/starch/alpha-glucan phosphoryla	0.409	0.092	0.467	7e-11
398986694	816	glycogen/starch/alpha-glucan phosphoryla	0.505	0.116	0.386	8e-11
398851383	816	glycogen/starch/alpha-glucan phosphoryla	0.505	0.116	0.386	1e-10
398975306	816	glycogen/starch/alpha-glucan phosphoryla	0.505	0.116	0.386	1e-10
428186643	850	glucan phosphorylase [Guillardia theta C	0.382	0.084	0.486	1e-10
395647749	816	glycogen phosphorylase [Pseudomonas extr	0.489	0.112	0.388	1e-10
226946579	815	glycogen phosphorylase [Azotobacter vine	0.255	0.058	0.645	2e-10
302835559	1009	hypothetical protein VOLCADRAFT_89705 [V	0.234	0.043	0.727	2e-10

>gi|298292535|ref|YP_003694474.1| glycogen/starch/alpha-glucan phosphorylase [Starkeya novella DSM 506] gi|296929046|gb|ADH89855.1| glycogen/starch/alpha-glucan phosphorylase [Starkeya novella DSM 506]

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 10/121 (8%)

Query: 1   MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYE 60
           +T L+   +  A+   LG+D++ L  +E DA LGNGGLGRLAACF+DSMATL ++AYGY 
Sbjct: 102 LTNLELLDTVRAALGDLGVDLDRLRQVEPDAALGNGGLGRLAACFMDSMATLSIAAYGYG 161

Query: 61  CFMMVLIYTGRIKETLQPQ--EATLH-------QKVTVLFEIAGGRKTETVPALSGQRQK 111
                 ++   IK   Q +  E  L        ++  V +++  G   E+VP + G+R+K
Sbjct: 162 IRYENGLFRQMIKNGWQQEFPEDWLSFGNPWEFERPEVTYDVGFGGSVESVP-VGGERKK 220

Query: 112 H 112
            
Sbjct: 221 Q 221

Source: Starkeya novella DSM 506

Species: Starkeya novella

Genus: Starkeya

Family: Xanthobacteraceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|394987982|ref|ZP_10380820.1| hypothetical protein SCD_00381 [Sulfuricella denitrificans skB26] gi|393792440|dbj|GAB70459.1| hypothetical protein SCD_00381 [Sulfuricella denitrificans skB26]

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 43/60 (71%)

Query: 18  GLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQ 77
           GLD+E+  A+E DA LGNGGLGRLAACFLDSMATLGL +YGY       ++  RI+   Q
Sbjct: 112 GLDLEQARAMEPDAALGNGGLGRLAACFLDSMATLGLPSYGYGIRYEYGMFNQRIENGWQ 171

Source: Sulfuricella denitrificans skB26

Species: Sulfuricella denitrificans

Genus: Sulfuricella

Family: Hydrogenophilaceae

Order: Hydrogenophilales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|217976412|ref|YP_002360559.1| glycogen/starch/alpha-glucan phosphorylase [Methylocella silvestris BL2] gi|217501788|gb|ACK49197.1| glycogen/starch/alpha-glucan phosphorylase [Methylocella silvestris BL2]

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%)

Query: 1   MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYE 60
           +T ++      A+  +LG+D+E L  +E DA LGNGGLGRLAACF++SMATL ++AYGY 
Sbjct: 103 LTNMELIDQTRAALAELGVDLEALREVEPDAALGNGGLGRLAACFMESMATLSIAAYGYG 162

Query: 61  CFMMVLIYTGRIKETLQ 77
                 ++  RIK+  Q
Sbjct: 163 IRYDHGLFRQRIKDGRQ 179

Source: Methylocella silvestris BL2

Species: Methylocella silvestris

Genus: Methylocella

Family: Beijerinckiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398986694|ref|ZP_10691675.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM24] gi|399011551|ref|ZP_10713882.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM16] gi|398117699|gb|EJM07445.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM16] gi|398151790|gb|EJM40328.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM24]

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 11/106 (10%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKET 75
           +LG+D+E +  +E DA LGNGGLGRLAACF++SM+TLG++ +GY       ++   I + 
Sbjct: 102 ELGVDLERIRLLEPDAALGNGGLGRLAACFMESMSTLGIAGHGYGIRYEHGLFRQAIVDG 161

Query: 76  LQPQEATLH----------QKVTVLFEIAGGRKTETVPALSGQRQK 111
            Q QE T H          ++  V++ I  G   ETV  +SG+ ++
Sbjct: 162 WQ-QEQTEHWLDFGNPWEFERPEVVYSIGFGGSVETVTDISGKSKQ 206

Source: Pseudomonas sp. GM24

Species: Pseudomonas sp. GM24

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398851383|ref|ZP_10608069.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM80] gi|398246892|gb|EJN32366.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM80]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 11/106 (10%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKET 75
           +LG+D+E +  +E DA LGNGGLGRLAACF++SM+TLG++ +GY       ++   I + 
Sbjct: 102 ELGVDLERIRLLEPDAALGNGGLGRLAACFMESMSTLGIAGHGYGIRYEHGLFRQAIVDG 161

Query: 76  LQPQEATLH----------QKVTVLFEIAGGRKTETVPALSGQRQK 111
            Q QE T H          ++  V++ I  G   ETV  +SG+ ++
Sbjct: 162 WQ-QEQTEHWLDFGNPWEFERPEVVYSIGFGGSVETVTDVSGKSKQ 206

Source: Pseudomonas sp. GM80

Species: Pseudomonas sp. GM80

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398975306|ref|ZP_10685454.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM25] gi|398140530|gb|EJM29492.1| glycogen/starch/alpha-glucan phosphorylase [Pseudomonas sp. GM25]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 11/106 (10%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKET 75
           +LG+D+E +  +E DA LGNGGLGRLAACF++SM+TLG++ +GY       ++   I + 
Sbjct: 102 ELGVDLERIRILEPDAALGNGGLGRLAACFMESMSTLGIAGHGYGIRYEHGLFRQAIVDG 161

Query: 76  LQPQEATLH----------QKVTVLFEIAGGRKTETVPALSGQRQK 111
            Q QE T H          ++  V++ I  G   ETV   SG+ ++
Sbjct: 162 WQ-QEQTEHWLDFGNPWEFERPEVVYPIGFGGSVETVTDASGKSRQ 206

Source: Pseudomonas sp. GM25

Species: Pseudomonas sp. GM25

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|428186643|gb|EKX55493.1| glucan phosphorylase [Guillardia theta CCMP2712]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 2/74 (2%)

Query: 4   LKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFM 63
           L++P+  +   +++G  +E+L   E+DA LGNGGLGRLAACFLDSMATL L A+GY    
Sbjct: 130 LQKPYKEAL--EEIGFKLEDLVEQEKDAALGNGGLGRLAACFLDSMATLNLPAWGYGIRY 187

Query: 64  MVLIYTGRIKETLQ 77
              ++  RIK+ +Q
Sbjct: 188 EHGMFEQRIKDGIQ 201

Source: Guillardia theta CCMP2712

Species: Guillardia theta

Genus: Guillardia

Family: Geminigeraceae

Order: Pyrenomonadales

Class: Cryptophyta

Superkingdom: Eukaryota

>gi|395647749|ref|ZP_10435599.1| glycogen phosphorylase [Pseudomonas extremaustralis 14-3 substr. 14-3b]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 11/103 (10%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKET 75
           +LG+D+E +  +E DA LGNGGLGRLAACF++SM+TLG++ +GY       ++   I + 
Sbjct: 102 ELGVDLERIRVLEPDAALGNGGLGRLAACFMESMSTLGIAGHGYGIRYEHGLFRQAIVDG 161

Query: 76  LQPQEATLH----------QKVTVLFEIAGGRKTETVPALSGQ 108
            Q QE T            ++  V++ I  G   +TVP  SG+
Sbjct: 162 WQ-QEQTERWLDFGNPWEFERAEVIYPIGFGGSVQTVPDASGK 203

Source: Pseudomonas extremaustralis 14-3 substr. 14-3b

Species: Pseudomonas extremaustralis

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|226946579|ref|YP_002801652.1| glycogen phosphorylase [Azotobacter vinelandii DJ] gi|226721506|gb|ACO80677.1| glycogen phosphorylase [Azotobacter vinelandii DJ]

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 12  ASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           A+  +LG+D+E +  +E DA LGNGGLGRLAACF++SMATLG+ AYGY
Sbjct: 97  AALAELGVDLERIRDLEPDAALGNGGLGRLAACFMESMATLGIPAYGY 144

Source: Azotobacter vinelandii DJ

Species: Azotobacter vinelandii

Genus: Azotobacter

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|302835559|ref|XP_002949341.1| hypothetical protein VOLCADRAFT_89705 [Volvox carteri f. nagariensis] gi|300265643|gb|EFJ49834.1| hypothetical protein VOLCADRAFT_89705 [Volvox carteri f. nagariensis]

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 36/44 (81%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           +LG D+E L  +E DA LGNGGLGRLAACFLDSMATL L A+GY
Sbjct: 281 ELGYDLETLSELERDAALGNGGLGRLAACFLDSMATLNLPAWGY 324

Source: Volvox carteri f. nagariensis

Species: Volvox carteri

Genus: Volvox

Family: Volvocaceae

Order: Chlamydomonadales

Class: Chlorophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
cd04300	797	cd04300, GT1_Glycogen_Phosphorylase, This is a fam	3e-26
pfam00343	712	pfam00343, Phosphorylase, Carbohydrate phosphoryla	3e-23
TIGR02093	794	TIGR02093, P_ylase, glycogen/starch/alpha-glucan p	3e-22
PRK14986	815	PRK14986, PRK14986, glycogen phosphorylase; Provis	4e-16
COG0058	750	COG0058, GlgP, Glucan phosphorylase [Carbohydrate	2e-15
PRK14985	798	PRK14985, PRK14985, maltodextrin phosphorylase; Pr	5e-14

>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of oligosaccharide phosphorylases

 Score =  104 bits (261), Expect = 3e-26
 Identities = 34/45 (75%), Positives = 39/45 (86%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
            +LG+D+E+LE  E DAGLGNGGLGRLAACFLDS+ATLGL  YGY
Sbjct: 86  AELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGY 130

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 797

>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase

 Score = 95.9 bits (239), Expect = 3e-23
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 16 KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
          +LGL++EEL   E DAGLGNGGLGRLAACFLDS+ATLGL AYGY
Sbjct: 4  ELGLNLEELLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGY 47

The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. Length = 712

>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases

 Score = 92.7 bits (231), Expect = 3e-22
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 16  KLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           +LGLD+EE+  IE DAGLGNGGLGRLAACFLDS+ATLGL A GY
Sbjct: 84  ELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGY 127

This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 794

>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional

 Score = 75.3 bits (185), Expect = 4e-16
 Identities = 32/45 (71%), Positives = 36/45 (80%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           + +GLD+EEL   E D GLGNGGLGRLAACFLDS+ATLGL   GY
Sbjct: 103 EAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGY 147

Length = 815

>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and metabolism]

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 26/43 (60%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 17  LGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           LG  + E    E D GLG GGLGRLA CFLDS A LGL   GY
Sbjct: 97  LGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGY 138

Length = 750

>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 18  GLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
            +++ +L   E D  LGNGGLGRLAACFLDSMAT+G  A GY
Sbjct: 95  DINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGY 136

Length = 798

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG2099|consensus	843		100.0
PF00343	713	Phosphorylase: Carbohydrate phosphorylase; InterPr	100.0
TIGR02093	794	P_ylase glycogen/starch/alpha-glucan phosphorylase	100.0
PRK14985	798	maltodextrin phosphorylase; Provisional	100.0
cd04300	797	GT1_Glycogen_Phosphorylase This is a family of oli	100.0
PRK14986	815	glycogen phosphorylase; Provisional	100.0
COG0058	750	GlgP Glucan phosphorylase [Carbohydrate transport	100.0
TIGR02094	601	more_P_ylases alpha-glucan phosphorylases. This fa	99.94
cd04299	778	GT1_Glycogen_Phosphorylase_like This family is mos	99.92

>KOG2099|consensus

Probab=100.00  E-value=8.6e-63  Score=466.03  Aligned_cols=173  Identities=33%  Similarity=0.476  Sum_probs=162.1

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      |.+|++...|.+||.+||+|+|+|.++|+||||||||||||||||||||||||+|++||||||+||+|+|+|.+|+|+|.
T Consensus       100 m~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~E~  179 (843)
T KOG2099|consen  100 MINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQVEE  179 (843)
T ss_pred             HHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceeee------e---------eeeeecccccccccccccccCCccceeccCCCC
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK------H---------ETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAP  145 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~------~---------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~  145 (188)
                      ||+||+.|||||+.|++....|.+ ||+|+.      |         .+++|||||.+.      ++||||||+|+++++
T Consensus       180 ~ddWL~~gnPWE~~R~e~~lPV~F-yGkV~~~~~g~kWid~q~V~A~~YD~PvPGyk~n------~vntlRLWsaka~~d  252 (843)
T KOG2099|consen  180 PDDWLRYGNPWEKARPEVMLPVHF-YGKVEHTPDGSKWIDTQVVLAMPYDTPVPGYKNN------TVNTLRLWSAKAPND  252 (843)
T ss_pred             hHHHHHcCCchhhcCcceEeEEEE-EEEEEeCCCcceeecceeEEEeccCCCCCCcccC------cceeeeeeccCCCCC
Confidence            999999999999999976666666 998886      2         334999999987      447899999999999


Q ss_pred             CCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597         146 QNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       146 fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      |||.+    ||..||.+++.||+|+||||||||+|+|..
T Consensus       253 f~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKe  291 (843)
T KOG2099|consen  253 FDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKE  291 (843)
T ss_pred             CCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchh
Confidence            99998    999999999999999999999999999864

>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=100.00  E-value=1.8e-58  Score=443.83  Aligned_cols=161  Identities=30%  Similarity=0.470  Sum_probs=141.7

Q ss_pred             HHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccccCCcccCCCcce
Q psy7597          13 SHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFE   92 (188)
Q Consensus        13 ~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~pd~Wl~~g~pWe   92 (188)
                      ||+++|+++++|+++|+||||||||||||||||||||||+++|++||||||+||+|||+|+||+|+|.||+|+..|||||
T Consensus         1 Al~~lg~~~~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe   80 (713)
T PF00343_consen    1 ALKELGFDLEELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWE   80 (713)
T ss_dssp             HHHHTT--HHHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTS
T ss_pred             ChhHhCCCHHHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCceeEEEecccceee----------------eeeeeeecccccccccccccccCCccceeccCCCCCCchh----hH
Q psy7597          93 IAGGRKTETVPALSGQRQ----------------KHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLK----TY  152 (188)
Q Consensus        93 ~~r~~~~~~v~i~~g~v~----------------~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~fnl~~----dy  152 (188)
                      ++|++.++.|++ +|+++                +..+++|||||.+.      ++||||||+|+++.+||+..    ||
T Consensus        81 ~~r~~~~~~V~f-~G~v~~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~------~vn~LRLw~a~~~~~fd~~~fn~gdy  153 (713)
T PF00343_consen   81 IRRPDESYEVKF-GGRVEDDGGRKVRWEDGETVLAVPYDMPIPGYRTK------TVNTLRLWSAEPSEEFDLESFNRGDY  153 (713)
T ss_dssp             EEEGGGEEEEEE-SEEEE-EETTEEEEESCEEEEEEEEEEEEE-SSSS-------EEEEEEEEEEESSSTTHHHHHTTCH
T ss_pred             EecCCceEEEec-cceEEecCCCcccccCCeEEEEEecCceeecCCCC------ceEEEEEeccCCCcccChhhcCCCcH
Confidence            999999999999 66665                22567999999988      56889999999999999998    99


Q ss_pred             HHHhhchhhcccccceeccCcccccccc
Q psy7597         153 LKFESNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       153 ~~a~~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      .+||++++.+|+||+||||||+-.+|+.
T Consensus       154 ~~a~~~~~~~e~is~vLYP~d~~~~Gk~  181 (713)
T PF00343_consen  154 IKAVEEKNRAENISKVLYPNDSTEEGKE  181 (713)
T ss_dssp             HHHHHHHHHHHGGGTBSS-SSSSHHHHH
T ss_pred             HHHHHHHHHhhceeeecCCCCccccchh
Confidence            9999999999999999999999988864

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases

Probab=100.00  E-value=7.1e-55  Score=422.67  Aligned_cols=173  Identities=28%  Similarity=0.423  Sum_probs=160.8

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      +.+|++.++++++|+++|+|+++|+++|+|||||||||||||||||||||||++|++||||||+||||+|+|.||+|+|.
T Consensus        69 l~nlgl~~~~~~~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~  148 (794)
T TIGR02093        69 LLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVEL  148 (794)
T ss_pred             HHhCCCHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceeee-------------------eeeeeecccccccccccccccCCccceecc
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK-------------------HETLAPFTGLAFYKANNFVSSKAPGIWQSS  141 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~-------------------~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~  141 (188)
                      ||+|+..++|||++|++.++.|++ +|+++.                   +.+.+|||||.+.      .+||||||+|+
T Consensus       149 pd~Wl~~~~pwe~~r~~~~~~V~f-~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~------~vn~LRLW~a~  221 (794)
T TIGR02093       149 PDDWLRYGNPWEIRRPDRSYEVRF-GGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTD------TVNTLRLWSAE  221 (794)
T ss_pred             CCCcCCCCCCceeecCCcEEEEEe-CCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCC------ceEEEEEEEec
Confidence            999999999999999999999999 664522                   1346999999987      45789999999


Q ss_pred             CCCCCCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597         142 KTAPQNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       142 ~~~~fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      ++..|||..    ||.+|+++++.+++||+||||+|+-.+|+.
T Consensus       222 ~~~~f~l~~fn~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~  264 (794)
T TIGR02093       222 APEEFDLDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKE  264 (794)
T ss_pred             CccccCHhhccCccHhhhhhChhhcCccccCCcCCCCccchHH
Confidence            999999888    999999999999999999999998877763

This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.

>PRK14985 maltodextrin phosphorylase; Provisional

Probab=100.00  E-value=9e-55  Score=421.97  Aligned_cols=173  Identities=24%  Similarity=0.327  Sum_probs=161.3

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      +.+|++.++++++|+++|+|+++|+++|+|||||||||||||||||||||||++|++||||||+||||+|+|.||+|+|.
T Consensus        78 l~nlgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~  157 (798)
T PRK14985         78 LLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEA  157 (798)
T ss_pred             HHhcCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEEC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceeee------e---------eeeeecccccccccccccccCCccceeccCCCC
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK------H---------ETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAP  145 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~------~---------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~  145 (188)
                      ||.|+..++|||++|++.++.|++ +|++..      |         .+.+|||||.+.      +++|||||+|+++.+
T Consensus       158 pd~Wl~~~~pwe~~r~~~~~~V~f-~G~v~~~~G~~~w~~~~~v~avpyDvpi~Gy~~~------~~n~LRLW~a~~~~~  230 (798)
T PRK14985        158 PDDWHRDSYPWFRHNEALDVQVGI-GGKVTKQDGRERWEPAFTITGEAWDLPVVGYRNG------VAQPLRLWQATHAHP  230 (798)
T ss_pred             CCCcccCCCCceecCCCceEEEee-CCEEEeeCCcEEEECCEEEEEEeccccccCCCCC------ceEEEEEeEcCCCCc
Confidence            999999999999999999999999 665532      1         346999999988      558899999999999


Q ss_pred             CCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597         146 QNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       146 fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      |||.+    ||.+|+++++.+++||+||||+|+-.+|+.
T Consensus       231 ~~l~~fn~gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~  269 (798)
T PRK14985        231 FDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKK  269 (798)
T ss_pred             cCHHHcCCcchhhccccchhhcchhceecCCCCCcchHH
Confidence            99998    999999999999999999999999777763

>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases

Probab=100.00  E-value=2.3e-54  Score=419.51  Aligned_cols=173  Identities=27%  Similarity=0.426  Sum_probs=159.9

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      |.+|++.++++++|+++|+++++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.+|+|+|.
T Consensus        72 l~nLgl~~~~~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~  151 (797)
T cd04300          72 LLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVEL  151 (797)
T ss_pred             HHhCCcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEec
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceeeee-------------------eeeeecccccccccccccccCCccceecc
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQKH-------------------ETLAPFTGLAFYKANNFVSSKAPGIWQSS  141 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~~-------------------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~  141 (188)
                      ||+|+..++|||++|++.+++|++ +|++..+                   .+++|||||.+.      .++|||||+|+
T Consensus       152 pd~Wl~~~~pwe~~r~~~~~~V~f-~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~------~~n~LRLW~a~  224 (797)
T cd04300         152 PDNWLRYGNPWEIRRPDVAVPVRF-GGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTN------TVNTLRLWSAE  224 (797)
T ss_pred             CCCccCCCCCceEecCCcEEEEEE-CCEEEEeecCCcceeeecCcceEEeeecceeecCCCCC------ceEEEEEEEee
Confidence            999999999999999999999999 5545321                   345999999987      45789999999


Q ss_pred             CCCCCCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597         142 KTAPQNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       142 ~~~~fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      ++..||+..    ||.+|+++.+.+++||+||||+|+-.+|+.
T Consensus       225 ~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~  267 (797)
T cd04300         225 ASEEFDLDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKE  267 (797)
T ss_pred             CCCCcCHHHhcCCchhhHHhhHHHhhhhhcccCCCCCchhHHH
Confidence            999998765    999999999999999999999998877753

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>PRK14986 glycogen phosphorylase; Provisional

Probab=100.00  E-value=4.7e-54  Score=417.86  Aligned_cols=172  Identities=28%  Similarity=0.415  Sum_probs=160.2

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      +.+|++.++++++|+++|+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||+|+|.
T Consensus        89 l~nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG~Q~E~  168 (815)
T PRK14986         89 LLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKES  168 (815)
T ss_pred             HHhcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEEc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceeee------e---------eeeeecccccccccccccccCCccceeccCCCC
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK------H---------ETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAP  145 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~------~---------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~  145 (188)
                      ||+|+..|+|||+.|++.++.|+| +|++..      |         .+++|||||+|.      .++|||||+|+++.+
T Consensus       169 pd~w~~~~~pwe~~r~~~~~~V~f-~g~~~~~g~~~~w~~~~~v~avpyD~pipgy~t~------~vn~lRLW~a~~~~~  241 (815)
T PRK14986        169 PDYWLEYGNPWEFKRHNTRYKVRF-GGRIQQEGKKTRWIETEEILAVAYDQIIPGYDTD------ATNTLRLWSAQASSE  241 (815)
T ss_pred             CCCccCCCCceeEecCCcEEEEEe-CCEEEecCceeEeeCCeeEEEEeCCccccCCCCC------ceEEEEEEEeecCcc
Confidence            999999999999999999999999 665543      1         344799999765      348899999999999


Q ss_pred             CCchh----hHHHHhhchhhcccccceeccCccccccc
Q psy7597         146 QNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSR  179 (188)
Q Consensus       146 fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~  179 (188)
                      ||+..    +|..|+.+++.+++||+||||+|++.+|+
T Consensus       242 fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk  279 (815)
T PRK14986        242 INLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGR  279 (815)
T ss_pred             cCHhhcccccHHHHhhccchhhccccccCCCCCCcccH
Confidence            99988    99999999999999999999999988875

>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3e-41  Score=326.10  Aligned_cols=150  Identities=27%  Similarity=0.325  Sum_probs=136.8

Q ss_pred             CCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCcccccc
Q psy7597           2 TTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA   81 (188)
Q Consensus         2 ~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~p   81 (188)
                      .+++.-+.++++|+++|+++.|+.+.|+||++| |||||||||||||||+||+|++||||||+||||+|++.||+|+|.|
T Consensus        82 ~n~g~~~~~~~~l~~~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p  160 (750)
T COG0058          82 WNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELP  160 (750)
T ss_pred             hhhcchHHHHhhHHhhhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecc
Confidence            467888899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCcceEeeCceeEEEecccceeeeeeeeeecccccccccccccccCCccceeccCCC-CCCchh-hHHHHhhch
Q psy7597          82 TLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTA-PQNLLK-TYLKFESNT  159 (188)
Q Consensus        82 d~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~-~fnl~~-dy~~a~~~~  159 (188)
                      |.|+..|+|||+.|+..            +..+.+||+||++ +      .+|||||++++.. +|+|.+ +--   ++.
T Consensus       161 ~~w~~~~~pwe~~r~~~------------a~~~d~~V~g~~~-~------~~~lrlW~a~~~~~~~~l~~~n~~---e~~  218 (750)
T COG0058         161 DEWLKYGNPWEFLRDAE------------GVPYDVPVPGYDN-R------VVTLRLWQAQVGRVPLYLLDFNVG---ENK  218 (750)
T ss_pred             hhhhccCCcceeecccC------------CceeeeeEEeccC-c------EEEEEEEEEecCccceEeecCCCc---ccc
Confidence            99999999999998711            3366799999996 2      2679999999999 999988 222   899


Q ss_pred             hhcccccceeccCcc
Q psy7597         160 EHCMALGRVIGTSAA  174 (188)
Q Consensus       160 ~~ae~IsrVly~~~~  174 (188)
                      ..+++||+||||+|+
T Consensus       219 ~~~~~iT~~LYp~Ds  233 (750)
T COG0058         219 NDARNITRVLYPGDS  233 (750)
T ss_pred             hhhhhHHhhcCCCCc
Confidence            999999999999994

>TIGR02094 more_P_ylases alpha-glucan phosphorylases

Probab=99.94  E-value=7e-28  Score=228.63  Aligned_cols=124  Identities=19%  Similarity=0.189  Sum_probs=99.6

Q ss_pred             hhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEec-CCccccccCCcccCCCcceEeeCceeEEEeccc
Q psy7597          28 EEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIK-ETLQPQEATLHQKVTVLFEIAGGRKTETVPALS  106 (188)
Q Consensus        28 E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~-dG~QvE~pd~Wl~~g~pWe~~r~~~~~~v~i~~  106 (188)
                      .+..++|||||||||||||||||+||+|++||||+|+||||+|+|. ||+|+|.|++|...+.||+....        ..
T Consensus        11 ~~~~p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~~--------~~   82 (601)
T TIGR02094        11 HESLPIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVLD--------TD   82 (601)
T ss_pred             CCCCCccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEec--------CC
Confidence            4567999999999999999999999999999999999999999997 99999999999999999987321        12


Q ss_pred             ceeeeeeeeeecccccccccccccccCCccceeccCCC-CCCchh-hHHHHhhchhhcccccceeccCcc
Q psy7597         107 GQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTA-PQNLLK-TYLKFESNTEHCMALGRVIGTSAA  174 (188)
Q Consensus       107 g~v~~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~-~fnl~~-dy~~a~~~~~~ae~IsrVly~~~~  174 (188)
                      |+  ...+.+||||..          .++|+|++++.. ++-|.+ +.   .++...+.+||++|||+|.
T Consensus        83 g~--~~~~~v~i~g~~----------~~~rlw~~~~~~v~lylld~~~---~~n~~~~R~it~~LY~~D~  137 (601)
T TIGR02094        83 GK--WLKISVRIRGRD----------VYAKVWRVQVGRVPLYLLDTNI---PENSEDDRWITGRLYGGDK  137 (601)
T ss_pred             CC--eEEEEEecCCcE----------EEEEEEEEEeCCCCEEEecCCC---cccchhhcCccCCCCCCCH
Confidence            21  124458999732          459999999732 233333 43   5667788999999999883

This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.

>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences

Probab=99.92  E-value=5.1e-26  Score=221.68  Aligned_cols=125  Identities=18%  Similarity=0.259  Sum_probs=100.0

Q ss_pred             hhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEec-CCccccccCCcccCCCcceEeeCceeEEEeccc
Q psy7597          28 EEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIK-ETLQPQEATLHQKVTVLFEIAGGRKTETVPALS  106 (188)
Q Consensus        28 E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~-dG~QvE~pd~Wl~~g~pWe~~r~~~~~~v~i~~  106 (188)
                      .+..++|||||||||||||||+|+||+|++||||+|++|||+|+|. ||+|+|.++.|...+.||+..+..        .
T Consensus        98 ~~~lpiYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~~~--------~  169 (778)
T cd04299          98 HESLPIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVRDA--------D  169 (778)
T ss_pred             CCCCCccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEecC--------C
Confidence            3457899999999999999999999999999999999999999997 999999999999999999874331        1


Q ss_pred             ceeeeeeeeeecccccccccccccccCCccceeccCCC-CCCchh-hHHHHhhchhhcccccceeccCccc
Q psy7597         107 GQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTA-PQNLLK-TYLKFESNTEHCMALGRVIGTSAAL  175 (188)
Q Consensus       107 g~v~~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~-~fnl~~-dy~~a~~~~~~ae~IsrVly~~~~~  175 (188)
                      |+-  ..+.+||||+.++          +|+|++++.. ++-|.+ +..   +|......||.+||+.|+-
T Consensus       170 G~~--~~v~v~l~g~~v~----------~rvw~~~vg~v~lylLDtd~~---~n~~~~R~iT~~LYg~D~~  225 (778)
T cd04299         170 GEP--VRVSVELPGRTVY----------ARVWKAQVGRVPLYLLDTDIP---ENSPDDRGITDRLYGGDQE  225 (778)
T ss_pred             CCe--EEEEEeeCCCceE----------EEEEEEEcCCCCEEEecCCcc---ccchhhcccccCCCCCcHH
Confidence            211  1234899998765          9999999853 233333 322   5566778999999998863

Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
1xoi_A	846	Human Liver Glycogen Phosphorylase A Complexed With		1e-04
1fa9_A	846	Human Liver Glycogen Phosphorylase A Complexed With		1e-04
1em6_A	847	Human Liver Glycogen Phosphorylase A Complexed With		1e-04
1fc0_A	846	Human Liver Glycogen Phosphorylase Complexed With N		1e-04
3dds_A	848	Crystal Structure Of Glycogen Phosphorylase Complex		1e-04
2zb2_A	849	Human Liver Glycogen Phosphorylase A Complexed With		1e-04
3ceh_A	809	Human Liver Glycogen Phosphorylase (Tense State) In		1e-04
2qll_A	847	Human Liver Glycogen Phosphorylase- Gl Complex Leng		1e-04
1z8d_A	842	Crystal Structure Of Human Muscle Glycogen Phosphor		7e-04

>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Chloroindoloyl Glycine Amide Length = 846

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 142 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 179

>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp Length = 846

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 142 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 179

>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac And Cp-526, 423 Length = 847

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 143 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 180

>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With N-Acetyl-Beta-D- Glucopyranosylamine Length = 846

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 142 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 179

>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With An Anthranilimide Based Inhibitor Gsk261 Length = 848

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 144 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 181

>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose And 5- Chloro-N-[4-(1, 2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide Length = 849

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 145 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 182

>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In Complex With The Allosteric Inhibitor Ave5688 Length = 809

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 120 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 157

>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex Length = 847

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I++  Q +EA
Sbjct: 143 CFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 180

>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose Length = 842

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 44  CFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81
           CFLDSMATLGL+AYGY       I+  +I    Q +EA
Sbjct: 143 CFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEA 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
2c4m_A	796	Glycogen phosphorylase; allosteric control, phosph	1e-22
1l5w_A	796	Maltodextrin phosphorylase; enzymatic catalysis, s	1e-22
1ygp_A	879	Yeast glycogen phosphorylase; phosphorylated form,	1e-22
2gj4_A	824	Glycogen phosphorylase, muscle form; transferase;	2e-22

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Length = 796

 Score = 93.7 bits (234), Expect = 1e-22
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           ++LG ++ ++  IE DA LGNGGLGRLAACFLDS  T      GY
Sbjct: 93  RELGHELTDILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGY 137

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796

 Score = 93.3 bits (233), Expect = 1e-22
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           +   +++ +L   E D  LGNGGLGRLAACFLDSMAT+G SA GY
Sbjct: 92  KAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGY 136

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Length = 824

 Score = 92.6 bits (231), Expect = 2e-22
 Identities = 40/45 (88%), Positives = 43/45 (95%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
            +LGLD+EELE IEEDAGLGNGGLGRLAACFLDSMATLGL+AYGY
Sbjct: 102 YQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGY 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
2gj4_A	824	Glycogen phosphorylase, muscle form; transferase;	100.0
1l5w_A	796	Maltodextrin phosphorylase; enzymatic catalysis, s	100.0
1ygp_A	879	Yeast glycogen phosphorylase; phosphorylated form,	100.0
2c4m_A	796	Glycogen phosphorylase; allosteric control, phosph	100.0

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...

Probab=100.00  E-value=2.1e-56  Score=433.80  Aligned_cols=173  Identities=35%  Similarity=0.484  Sum_probs=155.1

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      |.+|++.++|+++|+++|+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||+|+|.
T Consensus        88 l~nlg~~~~~~~~l~~~g~~l~~i~~~E~d~~LgnGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~G~F~Q~i~dG~Q~E~  167 (824)
T 2gj4_A           88 MVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEE  167 (824)
T ss_dssp             HHHHTCHHHHHHHHHHTTCCHHHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEETTEEEEE
T ss_pred             HHHCCCHHHHHHHHHHhCCCHHHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeeEEeeCCEEEEc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceee---------------eeeeeeecccccccccccccccCCccceeccCCCC
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQ---------------KHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAP  145 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~---------------~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~  145 (188)
                      ||+|++.|||||++|++.++.|++ +|++.               +..+++|||||.+.      ++||||||+|+++.+
T Consensus       168 ~d~Wl~~~~pwe~~r~~~~~~V~f-~g~v~~~~~g~~w~~~~~v~av~yD~pi~Gy~~~------~vn~lRlW~a~~~~~  240 (824)
T 2gj4_A          168 ADDWLRYGNPWEKARPEFTLPVHF-YGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNN------VVNTMRLWSAKAPND  240 (824)
T ss_dssp             CCCTTTTCCTTCEECGGGCEEEEE-SCEEEECSSSEEEESCEEEEEEEEEEEEECSSSS------CEEEEEEEEEECCC-
T ss_pred             CccccccCCcccccCCCceEEEEe-CCEEEecCCCceecccceEEEeeccCCcCCCCCC------ceEEEEEEEeecCcc
Confidence            999999999999999999999987 55543               22556999999987      458899999999999


Q ss_pred             CCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597         146 QNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       146 fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      |||..    +|..|+.+++.+|+||+||||+|+.++|+.
T Consensus       241 f~~~~fn~G~~~~a~~d~~~~enIt~~LYp~D~~~~Gk~  279 (824)
T 2gj4_A          241 FNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKE  279 (824)
T ss_dssp             ---------CHHHHHHTHHHHHGGGSBCCCCSSCCCCCH
T ss_pred             cchhhccCccHHHHHhcccchhhcCcCCCCCCCccchHh
Confidence            99886    999999999999999999999999888763

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*

Probab=100.00  E-value=5e-56  Score=430.01  Aligned_cols=173  Identities=25%  Similarity=0.354  Sum_probs=162.3

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      |.+|++.++|+++|+++|+++++|+++|+||+|||||||||||||||||||||+|++||||||+||||+|+|.||+|+|.
T Consensus        78 l~nlg~~~~~~~~l~~~g~~l~~~~~~E~d~~LgnGGLGrLAacfldS~a~l~~p~~G~Gi~Y~~G~F~Q~i~dG~Q~E~  157 (796)
T 1l5w_A           78 LLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEA  157 (796)
T ss_dssp             HHHHTCHHHHHHHHHTTTCCHHHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEE
T ss_pred             HHhcCcHHHHHHHHHHcCCCHHHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeeeecCCceeEEecCCeeEEe
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceee------------eeeeeeecccccccccccccccCCccceeccCCCCCCc
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQ------------KHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNL  148 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~------------~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~fnl  148 (188)
                      ||+|++.|+|||+.|++.++.|++ +|+++            ++.+++|||||.+.      ++||||||+|+++..|||
T Consensus       158 ~d~wl~~~~pwe~~r~~~~~~V~f-~g~~~~~~~w~~~~~v~av~yd~pi~Gy~~~------~~n~lrlW~a~~~~~f~l  230 (796)
T 1l5w_A          158 PDDWHRSNYPWFRHNEALDVQVGI-GGKVTKDGRWEPEFTITGQAWDLPVVGYRNG------VAQPLRLWQATHAHPFDL  230 (796)
T ss_dssp             CCCCCGGGCTTCEECGGGCEEEEE-SCEECTTSCEECSEEEEEEEEEEEEECSSSC------CEEEEEEEEEECSSCCCH
T ss_pred             cCccccCCCcceeecCCcEEEEee-CCEEeecceecCCceEEEEEecccccCCCCC------ceEEEEEEEeccCcccCh
Confidence            999999999999999999999999 66554            34667999999987      558899999999999998


Q ss_pred             hh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597         149 LK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       149 ~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      ..    ||.+|+++++.+++||+||||+|+.++|+.
T Consensus       231 ~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~  266 (796)
T 1l5w_A          231 TKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKK  266 (796)
T ss_dssp             HHHHTTCTTGGGHHHHHHHGGGTCSSCCCSSHHHHH
T ss_pred             hhcCCccHhhhhhchHhHhhhhhcCcCCCCccchHH
Confidence            87    999999999999999999999999887763

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}

Probab=100.00  E-value=3.7e-55  Score=423.98  Aligned_cols=174  Identities=23%  Similarity=0.336  Sum_probs=163.6

Q ss_pred             CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597           1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE   80 (188)
Q Consensus         1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~   80 (188)
                      |.+|++.++|+++|+++|+++++|+++|+||+|||||||||||||||||||||+|++||||||+||||+|+|.||+|+|.
T Consensus        79 l~nlg~~~~~~~~l~~~g~~l~~~~~~E~d~~LgnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~  158 (796)
T 2c4m_A           79 LTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEK  158 (796)
T ss_dssp             HHHTTCHHHHHHHHHHTTCCHHHHHTTCCCBCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEE
T ss_pred             HHhcccHHHHHHHHHHcCCCHHHHHhhccccccCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEee
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCcceEeeCceeEEEecccceeeeeeeeeecccccccccccccccCCccceeccCCCCCCchh----hHHHHh
Q psy7597          81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLK----TYLKFE  156 (188)
Q Consensus        81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~fnl~~----dy~~a~  156 (188)
                      ||+|++.|+|||+.|++.++.|++.+-.|.++.+.+|||||.+.      ++||||||+|+++..|||..    ||.+|+
T Consensus       159 ~d~wl~~g~pwe~~r~~~~~~V~f~g~~v~a~~yd~pi~gy~~~------~~n~lrlW~a~~~~~f~l~~fn~gdy~~a~  232 (796)
T 2c4m_A          159 PDPWREEEYPFTIRRASDQLVVCFDDMKTRAIPYDMPITGYGTH------NVGTLRLWKAEPWEEFDYDAFNAQRFTDAI  232 (796)
T ss_dssp             CCCSSSSCCTTSEECGGGCEEEEETTEEEEEEEEEEEECCTTCC------CCEEEEEEEEEESSSSCHHHHHTTCHHHHH
T ss_pred             CCccccCCCceeEecCCcEEEEEeCCEEEEEEEEeccccCcCCC------ceEEEEEEecccccccchhhccCcchhhhh
Confidence            99999999999999999999999955466677889999999987      56889999999999999766    999999


Q ss_pred             hchhhcccccceeccCcccccccc
Q psy7597         157 SNTEHCMALGRVIGTSAALFKSRQ  180 (188)
Q Consensus       157 ~~~~~ae~IsrVly~~~~~~~~~~  180 (188)
                      ++.+.+++||+||||+|+.++|+.
T Consensus       233 ~~~~~~~~It~~LYp~D~~~~Gk~  256 (796)
T 2c4m_A          233 IERERVSDICRVLYPNDTTYEGKK  256 (796)
T ss_dssp             HHHHHHHHHHHSSSCCCSSHHHHH
T ss_pred             hchHhhhchhhcCcCCCCCcchHH
Confidence            999999999999999999877753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1ygpa_	876	c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeas	1e-21
d2gj4a1	824	c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit	5e-21
d1l5wa_	796	c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {E	2e-20

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Glycogen phosphorylase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 87.4 bits (216), Expect = 5e-21
 Identities = 40/45 (88%), Positives = 43/45 (95%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
            +LGLD+EELE IEEDAGLGNGGLGRLAACFLDSMATLGL+AYGY
Sbjct: 102 YQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGY 146

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Length = 796

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Maltodextrin phosphorylase (MALP)
species: Escherichia coli [TaxId: 562]

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           +   +++ +L   E D  LGNGGLGRLAACFLDSMAT+G SA GY
Sbjct: 92  KAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGY 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1ygpa_	876	Glycogen phosphorylase {Baker's yeast (Saccharomyc	100.0
d2gj4a1	824	Glycogen phosphorylase {Rabbit (Oryctolagus cunicu	100.0
d1l5wa_	796	Maltodextrin phosphorylase (MALP) {Escherichia col	100.0

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Glycogen phosphorylase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=4.3e-52  Score=401.45  Aligned_cols=171  Identities=35%  Similarity=0.479  Sum_probs=154.9

Q ss_pred             CCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCcccccc
Q psy7597           2 TTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA   81 (188)
Q Consensus         2 ~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~p   81 (188)
                      .+|++.++++++|+++|+++++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||+|+|.|
T Consensus        89 ~nlg~~~~~~~al~~~g~~l~~i~~~E~da~LGnGGLGrLAgd~LkSaAdLglP~~G~GL~Y~~GyF~Q~I~dG~Q~E~~  168 (824)
T d2gj4a1          89 VNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA  168 (824)
T ss_dssp             HHHTCHHHHHHHHHHTTCCHHHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEETTEEEEEC
T ss_pred             HhCCCHHHHHHHHHHcCCCHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhCCCCeEEEEcCcCCCCeEEEEECCeEEEcC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCcceEeeCceeEEEecccceeee---------------eeeeeecccccccccccccccCCccceeccCCCCC
Q psy7597          82 TLHQKVTVLFEIAGGRKTETVPALSGQRQK---------------HETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQ  146 (188)
Q Consensus        82 d~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~---------------~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~f  146 (188)
                      |+|+..++|||+.|++.++.|++ +|+++.               ..+.+|||||.+.      .++|||||+|+++..|
T Consensus       169 d~w~~~~~Pwe~~r~~~~~~v~f-~g~v~~~~~~~~w~~~~~V~avpydv~i~g~~~~------~vn~lRlW~a~~~~~f  241 (824)
T d2gj4a1         169 DDWLRYGNPWEKARPEFTLPVHF-YGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNN------VVNTMRLWSAKAPNDF  241 (824)
T ss_dssp             CCTTTTCCTTCEECGGGCEEEEE-SCEEEECSSSEEEESCEEEEEEEEEEEEECSSSS------CEEEEEEEEEECCC--
T ss_pred             CccccCCCCceeecccceeEEec-CceeeecCccccccCceEEEEEeeeeEEeeccCc------eeEEEEEEeeccCccc
Confidence            99999999999999999999988 666542               2445999999987      4588999999999999


Q ss_pred             Cchh----hHHHHhhchhhcccccceeccCccccccc
Q psy7597         147 NLLK----TYLKFESNTEHCMALGRVIGTSAALFKSR  179 (188)
Q Consensus       147 nl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~  179 (188)
                      |+.+    +|..++.|++.+|+|++||||+|.+..|+
T Consensus       242 ~~~~~~~G~~~~~lld~~~~eni~~~ly~~d~ly~G~  278 (824)
T d2gj4a1         242 NLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGK  278 (824)
T ss_dssp             --------CHHHHHHTHHHHHGGGSBCCCCSSCCCCC
T ss_pred             cccccccCcHHHHHHhhcchhcchhccCCcccccCch
Confidence            9988    99999999999999999999999998775

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Maltodextrin phosphorylase (MALP)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-49  Score=382.23  Aligned_cols=171  Identities=26%  Similarity=0.358  Sum_probs=158.5

Q ss_pred             CCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCcccccc
Q psy7597           2 TTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA   81 (188)
Q Consensus         2 ~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~p   81 (188)
                      .+|++.++++++|+++|+|+++|+++|+||+||||||||||||||||||+||+|++||||+|+||||+|+|+||+|+|.|
T Consensus        79 ~nlgi~~~~~~al~~lg~~~~~~~~~E~d~~LgnGGLG~LAgd~lkSaadLglP~vGvGLlY~~GyF~Q~i~dG~Q~E~~  158 (796)
T d1l5wa_          79 LNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAP  158 (796)
T ss_dssp             HHHTCHHHHHHHHHTTTCCHHHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEEC
T ss_pred             HhCCCHHHHHHHHHHcCCCHHHHHhcCcCCCCCCchHHHHHHHHHHHHHhCCCCEEEEEcCcCCCCeEEEEECCEEEECC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCcceEeeCceeEEEecccceeee------------eeeeeecccccccccccccccCCccceeccCCCCCCch
Q psy7597          82 TLHQKVTVLFEIAGGRKTETVPALSGQRQK------------HETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLL  149 (188)
Q Consensus        82 d~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~------------~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~fnl~  149 (188)
                      |+|+..++|||+.|++.++.|++ +|++..            ....+||+||.+.      .++|||||+++++.+||+.
T Consensus       159 d~w~~~~~P~~~~~~~~~~~v~~-~g~v~~~~~w~~~~~V~a~~~d~~v~g~~~~------~v~~LrLw~a~~~~~~~~~  231 (796)
T d1l5wa_         159 DDWHRSNYPWFRHNEALDVQVGI-GGKVTKDGRWEPEFTITGQAWDLPVVGYRNG------VAQPLRLWQATHAHPFDLT  231 (796)
T ss_dssp             CCCCGGGCTTCEECGGGCEEEEE-SCEECTTSCEECSEEEEEEEEEEEEECSSSC------CEEEEEEEEEECSSCCCHH
T ss_pred             CCcccCCCceeeccccceEEEee-ccEEeecCcccCceEEEEEeeeeeeecccCC------ceeEEEeeecccCcccccc
Confidence            99999999999999999999998 554442            2335999999987      4578999999999999988


Q ss_pred             h----hHHHHhhchhhcccccceeccCccccccc
Q psy7597         150 K----TYLKFESNTEHCMALGRVIGTSAALFKSR  179 (188)
Q Consensus       150 ~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~  179 (188)
                      .    ||..++++.+.+++||++|||+|+..+|+
T Consensus       232 ~~~~~d~~~~~~n~~~~r~IT~~LY~~D~~~~gk  265 (796)
T d1l5wa_         232 KFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGK  265 (796)
T ss_dssp             HHHTTCTTGGGHHHHHHHGGGTCSSCCCSSHHHH
T ss_pred             ccccccHHHHHhchhhhhccceEeCCCCcccchH
Confidence            7    99999999999999999999999877664