Psyllid ID: psy7599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHcccccccHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHEcEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccHcHcccEEEEccccccccccEEEcccccccEEEc
Coil and Loop (DISEMBL)
mylqldigihrslGVFKTSLVkhlkgscfEQLCINYANEHLQYYFNQHVFQYEQEEYNkegirwrhiefsdntlclqlvegkpngllcvlddqanwsrgnpmvSCVFWmikpkekeeededeeQEEEEEQEEEEEQEEQEEeeeeeeeeeeeeeedsrili
Flexible Loop (DISEMBL)
mylqldigihrslGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEeeeqeeeeeqeeqeeeeeeeeeeeeeeeedsrili
Low Complexity Region (SEG)
MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPKEKeeededeeqeeeeeqeeeeeqeeqeeeeeeeeeeeeeeeedSRILI
Disordered region (IsUnstruct)
**LQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMI***************************************************
Disordered Region (DISOPRED)
*************GVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMI**********************************************SRILI
Disordered Region (DISEMBL)
MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPK************************************************
Disordered Region (DISPRO)
MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPKE***********E**EQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q9Z1N3	2626	Unconventional myosin-IXa	yes	N/A	0.552	0.033	0.483	8e-21
Q13459	2157	Unconventional myosin-IXb	yes	N/A	0.552	0.041	0.483	8e-21
Q8C170	2542	Unconventional myosin-IXa	no	N/A	0.552	0.035	0.483	9e-21
B2RTY4	2548	Unconventional myosin-IXa	no	N/A	0.552	0.034	0.483	9e-21
Q63358	1980	Unconventional myosin-IXb	no	N/A	0.552	0.044	0.471	2e-20
Q9QY06	2114	Unconventional myosin-IXb	no	N/A	0.552	0.042	0.471	2e-20
Q9QZZ4	3511	Unconventional myosin-XV	no	N/A	0.509	0.023	0.524	1e-18
Q9UKN7	3530	Unconventional myosin-XV	no	N/A	0.509	0.023	0.524	1e-18
O74805	1471	Myosin-51 OS=Schizosaccha	yes	N/A	0.559	0.061	0.483	1e-17
Q13402	2215	Unconventional myosin-VII	no	N/A	0.559	0.040	0.433	2e-17

>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1

 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%)

Query: 12  SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
           S+GV      +  + + FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ D
Sbjct: 532 SIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYID 591

Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           NT C+ L+  KP GLL +LD+++N+ +  
Sbjct: 592 NTCCINLISKKPTGLLHLLDEESNFPQAT 620

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho by stimulating it's GTPase activity in neurons, has a role in the regulation of neuronal morphology and function.
Rattus norvegicus (taxid: 10116)

>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3

 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query: 12  SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
           S+GV      +  + + FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I ++D
Sbjct: 515 SIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFNQHIFKLEQEEYQGEGITWHNIGYTD 574

Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           N  C+ L+  KP GL  +LD+++N+    
Sbjct: 575 NVGCIHLISKKPTGLFYLLDEESNFPHAT 603

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Homo sapiens (taxid: 9606)

>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%)

Query: 12  SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
           S+GV      +  + + FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ D
Sbjct: 532 SIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYID 591

Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           NT C+ L+  KP GLL +LD+++N+ +  
Sbjct: 592 NTCCINLISKKPTGLLHLLDEESNFPQAT 620

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Mus musculus (taxid: 10090)

>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%)

Query: 12  SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
           S+GV      +  + + FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ D
Sbjct: 532 SIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYID 591

Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           NT C+ L+  KP GLL +LD+++N+ +  
Sbjct: 592 NTCCINLISKKPTGLLHLLDEESNFPQAT 620

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Homo sapiens (taxid: 9606)

>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query: 12  SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
           S+GV      +  + + FEQ CINYANE LQYYF QH+F+ EQEEY  EGI W +I+++D
Sbjct: 515 SIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFTQHIFKLEQEEYQGEGISWHNIDYTD 574

Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           N  C+ L+  KP GL  +LD+++N+    
Sbjct: 575 NVGCIHLISKKPTGLFYLLDEESNFPHAT 603

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Rattus norvegicus (taxid: 10116)

>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query: 12  SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
           S+GV      +  + + FEQ CINYANE LQYYF QH+F+ EQEEY  EGI W +I+++D
Sbjct: 515 SIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFTQHIFKLEQEEYQGEGISWHNIDYTD 574

Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           N  C+ L+  KP GL  +LD+++N+    
Sbjct: 575 NVGCIHLISKKPTGLFYLLDEESNFPHAT 603

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Mus musculus (taxid: 10090)

>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 56/82 (68%)

Query: 12   SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
            S+ +      + L  + FEQLCINYANE+LQY FN+ VFQ EQEEY +E + WR I F+D
Sbjct: 1567 SIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQMDWREIAFAD 1626

Query: 72   NTLCLQLVEGKPNGLLCVLDDQ 93
            N  C+ L+  KP G+L +LDDQ
Sbjct: 1627 NQPCINLISLKPYGILRILDDQ 1648

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). Required for the arrangement of stereocilia in mature hair bundles.

Mus musculus (taxid: 10090)

>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 56/82 (68%)

Query: 12   SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
            S+ +      + L  + FEQLCINYANE+LQY FN+ VFQ EQEEY +E I W+ I F+D
Sbjct: 1583 SIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQIDWQEITFAD 1642

Query: 72   NTLCLQLVEGKPNGLLCVLDDQ 93
            N  C+ L+  KP G+L +LDDQ
Sbjct: 1643 NQPCINLISLKPYGILRILDDQ 1664

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Required for the arrangement of stereocilia in mature hair bundles.

Homo sapiens (taxid: 9606)

>sp|O74805|MYO51_SCHPO Myosin-51 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=myo51 PE=4 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 10  HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
           ++ +GV      +H + +  EQ CINYANE LQ  FN+HVF+ EQEEY KEG+ WR IE+
Sbjct: 432 YKYIGVVDIYGFEHFEKNSMEQFCINYANEKLQQEFNKHVFKLEQEEYVKEGLDWRLIEY 491

Query: 70  SDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           SDN  C+ L+E K  G+L +LD++     GN
Sbjct: 492 SDNQGCISLIEDKL-GILSLLDEECRLPSGN 521

Involved in cytokinesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q13402|MYO7A_HUMAN Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 61/90 (67%)

Query: 11  RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 70
           RS+G+      ++   + FEQLCIN+ANEHLQ +F +HVF+ EQEEY+ E I W HIEF+
Sbjct: 431 RSIGLLDIFGFENFAVNSFEQLCINFANEHLQQFFVRHVFKLEQEEYDLESIDWLHIEFT 490

Query: 71  DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           DN   L ++  KP  ++ ++D+++ + +G 
Sbjct: 491 DNQDALDMIANKPMNIISLIDEESKFPKGT 520

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. In the retina, plays an important role in the renewal of the outer photoreceptor disks. Plays an important role in the distribution and migration of retinal pigment epithelial (RPE) melanosomes and phagosomes, and in the regulation of opsin transport in retinal photoreceptors. In the inner ear, plays an important role in differentiation, morphogenesis and organization of cochlear hair cell bundles. Involved in hair-cell vesicle trafficking of aminoglycosides, which are known to induce ototoxicity (By similarity). Motor protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
270002356	2021	hypothetical protein TcasGA2_TC001372 [T	0.422	0.033	0.838	5e-29
189234985	1843	PREDICTED: similar to myosin-rhogap prot	0.422	0.036	0.838	5e-29
328701263	1931	PREDICTED: myosin-IXb isoform 2 [Acyrtho	0.422	0.035	0.823	4e-28
328701265	1863	PREDICTED: myosin-IXb isoform 3 [Acyrtho	0.422	0.036	0.823	5e-28
328701269	1847	PREDICTED: myosin-IXb isoform 1 [Acyrtho	0.422	0.036	0.823	5e-28
242011074	783	myosin IIIB, putative [Pediculus humanus	0.440	0.090	0.794	2e-27
328701267	1776	PREDICTED: myosin-IXb isoform 4 [Acyrtho	0.422	0.038	0.823	3e-27
357623270	1062	hypothetical protein KGM_18974 [Danaus p	0.422	0.064	0.823	3e-27
427791915	1463	Putative myosin class i heavy chain, par	0.428	0.047	0.768	6e-26
321455065	1839	hypothetical protein DAPPUDRAFT_64918 [D	0.422	0.036	0.779	1e-25

>gi|270002356|gb|EEZ98803.1| hypothetical protein TcasGA2_TC001372 [Tribolium castaneum]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 63/68 (92%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQLCINYANEHLQYYFNQHVF+YEQEEY KEGIRW +I+F DNT CLQL+EGKPNGLLC
Sbjct: 524 FEQLCINYANEHLQYYFNQHVFKYEQEEYRKEGIRWNNIDFMDNTGCLQLIEGKPNGLLC 583

Query: 89  VLDDQANW 96
           +LDDQ N+
Sbjct: 584 LLDDQCNF 591

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234985|ref|XP_968193.2| PREDICTED: similar to myosin-rhogap protein, myr [Tribolium castaneum]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 63/68 (92%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQLCINYANEHLQYYFNQHVF+YEQEEY KEGIRW +I+F DNT CLQL+EGKPNGLLC
Sbjct: 524 FEQLCINYANEHLQYYFNQHVFKYEQEEYRKEGIRWNNIDFMDNTGCLQLIEGKPNGLLC 583

Query: 89  VLDDQANW 96
           +LDDQ N+
Sbjct: 584 LLDDQCNF 591

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701263|ref|XP_003241546.1| PREDICTED: myosin-IXb isoform 2 [Acyrthosiphon pisum]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 61/68 (89%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKPNGLLC
Sbjct: 533 FEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKPNGLLC 592

Query: 89  VLDDQANW 96
           VLDDQ N+
Sbjct: 593 VLDDQCNF 600

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701265|ref|XP_003241547.1| PREDICTED: myosin-IXb isoform 3 [Acyrthosiphon pisum]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 61/68 (89%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKPNGLLC
Sbjct: 533 FEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKPNGLLC 592

Query: 89  VLDDQANW 96
           VLDDQ N+
Sbjct: 593 VLDDQCNF 600

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701269|ref|XP_001944223.2| PREDICTED: myosin-IXb isoform 1 [Acyrthosiphon pisum]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 61/68 (89%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKPNGLLC
Sbjct: 533 FEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKPNGLLC 592

Query: 89  VLDDQANW 96
           VLDDQ N+
Sbjct: 593 VLDDQCNF 600

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011074|ref|XP_002426282.1| myosin IIIB, putative [Pediculus humanus corporis] gi|212510345|gb|EEB13544.1| myosin IIIB, putative [Pediculus humanus corporis]

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/73 (79%), Positives = 63/73 (86%), Gaps = 2/73 (2%)

Query: 26  GSC--FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 83
           G C  FEQLCINYANEHLQ+YFNQHVF+YEQEEY KE IRW+ IEF DNT CLQL+EGKP
Sbjct: 363 GHCNSFEQLCINYANEHLQFYFNQHVFKYEQEEYRKENIRWKDIEFMDNTGCLQLIEGKP 422

Query: 84  NGLLCVLDDQANW 96
            GLLCVLDDQ N+
Sbjct: 423 LGLLCVLDDQCNF 435

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701267|ref|XP_003241548.1| PREDICTED: myosin-IXb isoform 4 [Acyrthosiphon pisum]

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 61/68 (89%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKPNGLLC
Sbjct: 446 FEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKPNGLLC 505

Query: 89  VLDDQANW 96
           VLDDQ N+
Sbjct: 506 VLDDQCNF 513

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623270|gb|EHJ74495.1| hypothetical protein KGM_18974 [Danaus plexippus]

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 61/68 (89%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQLCINYANEHLQYYFNQHVF+YEQEEY +EGIRW  I FSDNT CLQL+EGKP GLLC
Sbjct: 526 FEQLCINYANEHLQYYFNQHVFKYEQEEYRREGIRWTDIGFSDNTGCLQLIEGKPGGLLC 585

Query: 89  VLDDQANW 96
           +LDDQ N+
Sbjct: 586 LLDDQCNF 593

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791915|gb|JAA61409.1| Putative myosin class i heavy chain, partial [Rhipicephalus pulchellus]

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/69 (76%), Positives = 64/69 (92%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CIN+ANEHLQYYFNQHVF+YEQEEY KEGI+W++IEF+DNT CL L+EGKP+GLLC
Sbjct: 517 FEQFCINFANEHLQYYFNQHVFKYEQEEYQKEGIQWKNIEFTDNTGCLNLIEGKPHGLLC 576

Query: 89  VLDDQANWS 97
           +L+DQ N+S
Sbjct: 577 LLNDQCNFS 585

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321455065|gb|EFX66210.1| hypothetical protein DAPPUDRAFT_64918 [Daphnia pulex]

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/68 (77%), Positives = 59/68 (86%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CINYANEHLQYYFNQHVF+YEQEEY +EGI W +I+F DNT CLQL E KPNGLLC
Sbjct: 498 FEQFCINYANEHLQYYFNQHVFKYEQEEYKREGIHWVNIQFVDNTGCLQLYESKPNGLLC 557

Query: 89  VLDDQANW 96
           +LDDQ N+
Sbjct: 558 ILDDQCNF 565

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
WB|WBGene00002040	1880	hum-7 [Caenorhabditis elegans	0.440	0.037	0.633	1.2e-20
UNIPROTKB|F1S9U2	548	F1S9U2 "Uncharacterized protei	0.527	0.155	0.505	1.5e-20
UNIPROTKB|E1BS57	2001	Gga.50857 "Uncharacterized pro	0.540	0.043	0.505	3.5e-20
UNIPROTKB|E1C471	2031	Gga.50857 "Uncharacterized pro	0.540	0.042	0.505	3.5e-20
UNIPROTKB|E1C470	2140	Gga.50857 "Uncharacterized pro	0.540	0.040	0.505	3.8e-20
UNIPROTKB|G3MXH1	1104	Bt.27781 "Uncharacterized prot	0.527	0.076	0.505	7e-20
UNIPROTKB|H3BMM1	1301	MYO9A "Unconventional myosin-I	0.527	0.065	0.505	8.8e-20
UNIPROTKB|E1BNV7	2159	MYO9B "Uncharacterized protein	0.527	0.039	0.505	1.3e-19
UNIPROTKB|E2R266	2161	MYO9B "Uncharacterized protein	0.527	0.039	0.505	1.3e-19
UNIPROTKB|G3MXE8	1951	Bt.27781 "Uncharacterized prot	0.527	0.043	0.505	1.5e-19

WB|WBGene00002040 hum-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 259 (96.2 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 45/71 (63%), Positives = 59/71 (83%)

Query:    29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
             FEQLCINYANE LQ YFNQH+FQ+EQEEY KEGI W +IE++DNT C+QL + KP G+L 
Sbjct:   556 FEQLCINYANEKLQSYFNQHIFQFEQEEYLKEGISWTNIEYTDNTECVQLFQSKPYGILR 615

Query:    89 VLDDQANWSRG 99
             ++D+++N + G
Sbjct:   616 LVDEESNINNG 626

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0060002 "plus-end directed microfilament motor activity" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IPI

GO:0033275 "actin-myosin filament sliding" evidence=IDA

UNIPROTKB|F1S9U2 F1S9U2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 43/85 (50%), Positives = 60/85 (70%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I+++D
Sbjct:   388 SIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFNQHIFKLEQEEYQSEGISWHNIDYTD 447

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANW 96
             N  C+ L+  KP GL  +LD+++N+
Sbjct:   448 NVGCIHLISKKPTGLFYLLDEESNF 472

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|E1BS57 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++D
Sbjct:   514 SIGVLDIFGFEDFETNSFEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTD 573

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANWSR 98
             N  C+ L+  KP GL  +LD+++N+ R
Sbjct:   574 NVACIHLISKKPTGLFYLLDEESNFPR 600

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C471 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++D
Sbjct:   514 SIGVLDIFGFEDFETNSFEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTD 573

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANWSR 98
             N  C+ L+  KP GL  +LD+++N+ R
Sbjct:   574 NVACIHLISKKPTGLFYLLDEESNFPR 600

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C470 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++D
Sbjct:   514 SIGVLDIFGFEDFETNSFEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTD 573

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANWSR 98
             N  C+ L+  KP GL  +LD+++N+ R
Sbjct:   574 NVACIHLISKKPTGLFYLLDEESNFPR 600

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0002548 "monocyte chemotaxis" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0048246 "macrophage chemotaxis" evidence=IEA

GO:0072673 "lamellipodium morphogenesis" evidence=IEA

UNIPROTKB|G3MXH1 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 7.0e-20, P = 7.0e-20
 Identities = 43/85 (50%), Positives = 61/85 (71%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ D
Sbjct:   488 SIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYID 547

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANW 96
             NT C+ L+  KP GLL +LD+++N+
Sbjct:   548 NTCCINLISKKPTGLLHLLDEESNF 572

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|H3BMM1 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 8.8e-20, P = 8.8e-20
 Identities = 43/85 (50%), Positives = 61/85 (71%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ D
Sbjct:   127 SIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYID 186

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANW 96
             NT C+ L+  KP GLL +LD+++N+
Sbjct:   187 NTCCINLISKKPTGLLHLLDEESNF 211

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E1BNV7 MYO9B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 43/85 (50%), Positives = 60/85 (70%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I+++D
Sbjct:   519 SIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFNQHIFKLEQEEYQSEGISWHNIDYTD 578

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANW 96
             N  C+ L+  KP GL  +LD+++N+
Sbjct:   579 NVGCIHLISKKPTGLFYLLDEESNF 603

GO:0072673 "lamellipodium morphogenesis" evidence=IEA

GO:0048246 "macrophage chemotaxis" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=IEA

GO:0002548 "monocyte chemotaxis" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R266 MYO9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 43/85 (50%), Positives = 60/85 (70%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I+++D
Sbjct:   515 SIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFNQHIFKLEQEEYQSEGISWHNIDYTD 574

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANW 96
             N  C+ L+  KP GL  +LD+++N+
Sbjct:   575 NVGCIHLISKKPTGLFYLLDEESNF 599

GO:0046872 "metal ion binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|G3MXE8 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 43/85 (50%), Positives = 61/85 (71%)

Query:    12 SLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71
             S+GV      +  + + FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ D
Sbjct:   529 SIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYID 588

Query:    72 NTLCLQLVEGKPNGLLCVLDDQANW 96
             NT C+ L+  KP GLL +LD+++N+
Sbjct:   589 NTCCINLISKKPTGLLHLLDEESNF 613

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	161
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	1e-32
smart00242	677	smart00242, MYSc, Myosin	3e-31
cd00124	679	cd00124, MYSc, Myosin motor domain	9e-29
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	1e-26
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	1e-26
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	4e-26
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	3e-25
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	8e-25
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	3e-24
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	2e-21
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	5e-21
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	1e-20
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	4e-20
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	1e-18
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-11
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-10
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	7e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	1e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	9e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	1e-06
pfam03344	715	pfam03344, Daxx, Daxx Family	1e-06
pfam03344	715	pfam03344, Daxx, Daxx Family	1e-06
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	1e-06
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-06
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	2e-06
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	2e-06
pfam00183	529	pfam00183, HSP90, Hsp90 protein	2e-06
pfam03985	431	pfam03985, Paf1, Paf1	2e-06
pfam03985	431	pfam03985, Paf1, Paf1	3e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	3e-06
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-06
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	4e-06
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	4e-06
pfam03344	715	pfam03344, Daxx, Daxx Family	5e-06
pfam03985	431	pfam03985, Paf1, Paf1	5e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-06
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	8e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	9e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	9e-06
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	9e-06
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	1e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	1e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	2e-05
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	2e-05
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	2e-05
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	3e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	4e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	4e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	4e-05
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	4e-05
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	4e-05
pfam07222	243	pfam07222, PBP_sp32, Proacrosin binding protein sp	4e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	5e-05
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	5e-05
pfam03985	431	pfam03985, Paf1, Paf1	5e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-05
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	5e-05
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	5e-05
pfam05285	317	pfam05285, SDA1, SDA1	5e-05
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	5e-05
pfam09184	285	pfam09184, PPP4R2, PPP4R2	5e-05
pfam03985	431	pfam03985, Paf1, Paf1	6e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-05
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	6e-05
pfam03985	431	pfam03985, Paf1, Paf1	7e-05
pfam03985	431	pfam03985, Paf1, Paf1	7e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	7e-05
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	7e-05
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	7e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-05
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	7e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	8e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	8e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	8e-05
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	8e-05
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	9e-05
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	9e-05
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	9e-05
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	1e-04
pfam03985	431	pfam03985, Paf1, Paf1	1e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	1e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	1e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	1e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	1e-04
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	1e-04
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	1e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	2e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	2e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	2e-04
pfam05285	317	pfam05285, SDA1, SDA1	2e-04
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	2e-04
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	2e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	2e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	2e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	2e-04
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	2e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	2e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	2e-04
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	2e-04
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	2e-04
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	2e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-04
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	2e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	3e-04
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	3e-04
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	3e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-04
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	3e-04
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	3e-04
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	4e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	4e-04
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	4e-04
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	4e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	4e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	4e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	5e-04
pfam09184	285	pfam09184, PPP4R2, PPP4R2	5e-04
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	5e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-04
pfam11831	363	pfam11831, Myb_Cef, pre-mRNA splicing factor compo	5e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	6e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	6e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-04
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	6e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	6e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	6e-04
pfam14283	213	pfam14283, DUF4366, Domain of unknown function (DU	6e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	7e-04
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	7e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	7e-04
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	7e-04
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	8e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	8e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	8e-04
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	8e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	8e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	8e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	0.001
pfam03344	715	pfam03344, Daxx, Daxx Family	0.001
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.001
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.001
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.001
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.001
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.001
pfam07222	243	pfam07222, PBP_sp32, Proacrosin binding protein sp	0.001
pfam05285	317	pfam05285, SDA1, SDA1	0.001
pfam05285	317	pfam05285, SDA1, SDA1	0.001
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.001
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.001
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.001
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	0.001
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	0.001
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.001
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.001
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.001
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.001
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.001
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.001
pfam12253	76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	0.001
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.001
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.001
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	0.001
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.001
pfam09073	424	pfam09073, BUD22, BUD22	0.001
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.002
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.002
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.002
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	0.002
pfam05285	317	pfam05285, SDA1, SDA1	0.002
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.002
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.002
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.002
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	0.002
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.002
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.002
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	0.002
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.002
pfam05758	832	pfam05758, Ycf1, Ycf1	0.002
pfam03985	431	pfam03985, Paf1, Paf1	0.003
pfam05285	317	pfam05285, SDA1, SDA1	0.003
pfam05285	317	pfam05285, SDA1, SDA1	0.003
pfam05285	317	pfam05285, SDA1, SDA1	0.003
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.003
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.003
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.003
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.003
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.003
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.003
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.003
pfam09073	424	pfam09073, BUD22, BUD22	0.003
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.003
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.003
PRK14150	193	PRK14150, PRK14150, heat shock protein GrpE; Provi	0.003
COG5167	776	COG5167, VID27, Protein involved in vacuole import	0.003
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	0.003
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	0.003
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.003
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	0.003
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.004
pfam03985	431	pfam03985, Paf1, Paf1	0.004
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.004
pfam05285	317	pfam05285, SDA1, SDA1	0.004
pfam05285	317	pfam05285, SDA1, SDA1	0.004
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.004
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.004
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.004
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.004
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.004
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.004
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
pfam09073	424	pfam09073, BUD22, BUD22	0.004
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.004
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.004
pfam12118	261	pfam12118, SprA-related, SprA-related family	0.004
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	0.004
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.004
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	0.004
TIGR03685	105	TIGR03685, L12P_arch, 50S ribosomal protein L12P	0.004
COG5117	657	COG5117, NOC3, Protein involved in the nuclear exp	0.004

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score =  121 bits (304), Expect = 1e-32
 Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 2/76 (2%)

Query: 26  GSC--FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 83
           G C  FEQLCINYANE LQYYFNQH+F+ EQEEY  EGI W +IE++DN  C+QL   KP
Sbjct: 390 GRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKP 449

Query: 84  NGLLCVLDDQANWSRG 99
            GLL +LD+++N+   
Sbjct: 450 TGLLYLLDEESNFPHA 465

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score =  117 bits (296), Expect = 3e-31
 Identities = 41/65 (63%), Positives = 51/65 (78%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W  I+F DN  C+ L+E KP G+L 
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446

Query: 89  VLDDQ 93
           +LD++
Sbjct: 447 LLDEE 451

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score =  110 bits (277), Expect = 9e-29
 Identities = 41/66 (62%), Positives = 51/66 (77%)

Query: 28  CFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 87
            FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W  I+F+DN   + L+E KP GLL
Sbjct: 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLL 438

Query: 88  CVLDDQ 93
            +LD++
Sbjct: 439 SLLDEE 444

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score =  104 bits (261), Expect = 1e-26
 Identities = 40/89 (44%), Positives = 60/89 (67%)

Query: 11  RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 70
            S+GV      ++   + FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF 
Sbjct: 362 NSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFV 421

Query: 71  DNTLCLQLVEGKPNGLLCVLDDQANWSRG 99
           DN   L L+  KP  ++ ++D+++ + +G
Sbjct: 422 DNQDALDLIAIKPLNIMSLIDEESKFPKG 450

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score =  103 bits (260), Expect = 1e-26
 Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 1/83 (1%)

Query: 14  GVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DN 72
           GV      +  + + FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W  I++  DN
Sbjct: 366 GVLDIYGFEIFEKNSFEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDN 425

Query: 73  TLCLQLVEGKPNGLLCVLDDQAN 95
             C+ L+E KP G+L +LD++  
Sbjct: 426 QACIDLIEKKPPGILSLLDEECR 448

Length = 679

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score =  102 bits (257), Expect = 4e-26
 Identities = 38/64 (59%), Positives = 46/64 (71%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CIN  NE LQ +FNQHVF+ EQEEY KE I W +IEF DN   L L+E KP G++ 
Sbjct: 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIA 444

Query: 89  VLDD 92
           +LD+
Sbjct: 445 LLDE 448

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score =  100 bits (251), Expect = 3e-25
 Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 23  HLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 82
             + + FEQ CINYANE LQ  FNQHVF+ EQEEY KEGI W  I+F DN  C+ L+E K
Sbjct: 380 TFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK 439

Query: 83  PNGLLCVLDDQ 93
             G+L +LD++
Sbjct: 440 L-GILSLLDEE 449

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score = 99.2 bits (247), Expect = 8e-25
 Identities = 39/70 (55%), Positives = 50/70 (71%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W  I F+DN   + L+  KP G+L 
Sbjct: 379 FEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILR 438

Query: 89  VLDDQANWSR 98
           +LDDQ  + +
Sbjct: 439 ILDDQCCFPQ 448

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score = 97.6 bits (243), Expect = 3e-24
 Identities = 41/89 (46%), Positives = 57/89 (64%)

Query: 11  RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 70
           RS+ +      +    + FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W  +EF 
Sbjct: 365 RSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFE 424

Query: 71  DNTLCLQLVEGKPNGLLCVLDDQANWSRG 99
           DN  CL L E KP GLL +LD+++ +   
Sbjct: 425 DNQECLDLFEKKPLGLLSLLDEESTFPNA 453

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score = 89.5 bits (222), Expect = 2e-21
 Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 6/96 (6%)

Query: 4   QLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIR 63
           QL++GI   L +F     ++ K + FEQLCIN ANE +QYYFNQH+F +EQ+EY  EG+ 
Sbjct: 372 QLNVGI---LDIFG---FENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVD 425

Query: 64  WRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRG 99
            R +E+ DN   L +   KP GLL +LD+++ + + 
Sbjct: 426 ARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 88.6 bits (220), Expect = 5e-21
 Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 87
           FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W  I++ DN  C+ L+E K P G+L
Sbjct: 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505

Query: 88  CVLDDQA 94
            +LD++ 
Sbjct: 506 SLLDEEC 512

Length = 1463

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score = 86.9 bits (216), Expect = 1e-20
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 87
           FEQLCINY NE LQ +FN H+F  EQEEY +EGI W  I+F  D    + L+E  P G+L
Sbjct: 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451

Query: 88  CVLDDQ 93
            +LD++
Sbjct: 452 SLLDEE 457

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score = 85.3 bits (212), Expect = 4e-20
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 87
           FEQ CINY NE LQ  F +   + EQEEY +EGI+W  IE+ +N +   L+EGK P G+ 
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443

Query: 88  CVLDD 92
            +LDD
Sbjct: 444 SILDD 448

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score = 81.4 bits (201), Expect = 1e-18
 Identities = 30/66 (45%), Positives = 44/66 (66%)

Query: 29  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
           FEQ CINY NE LQ +FN+ + + EQE Y +EG+    + + DN  C+ L+E K NG+L 
Sbjct: 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474

Query: 89  VLDDQA 94
           +LD++ 
Sbjct: 475 ILDEEN 480

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 58.9 bits (142), Expect = 9e-11
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
           +     +  + EEEEE+EEEEE+EE+EEEEEEEEEEE EE
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 4/47 (8%)

Query: 113 KEKEEEDEDEEQ----EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           K+ E+  +        + EEE+EEEEE+EE+EEEEEEEEEEEEE EE
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 26/46 (56%), Positives = 32/46 (69%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           K  EK  +        + E+EEEEE+EE+EEEEEEEEEEEEEEE +
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 30  EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89
           EQL IN  NE LQ  F   VF+ E + Y  EGI    +E++ N   + L+ GK   +L +
Sbjct: 481 EQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540

Query: 90  LDDQ 93
           L+DQ
Sbjct: 541 LEDQ 544

Length = 821

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           + E+EE+EEEEE+EEEEE+EE+EEEEEE EE    E  ++R
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETR 902

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 23/43 (53%), Positives = 31/43 (72%)

Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K++E   +     +  + EEE+EE+EEEEEEEEEEEEEEEE+ 
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEE 888

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 21/43 (48%), Positives = 32/43 (74%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           E +++++  +     +  + EE+EE+EEEEEEEEEEEEEEEE+
Sbjct: 844 EAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEE 886

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           P    +E E+EE  EEEE+EEEEE+EE++E EEEE E+EEEEEE  
Sbjct: 432 PSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
              ++ EE+E  E+EEEEE+EEEEE++E EEEE E+EEEEEE E D+  
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
             +EEE+E+EE+EEEE++ EEEE E++EEEEE E +   EEE +
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 24/43 (55%), Positives = 34/43 (79%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           E  EE+E+EE+EEEEE++E EE+E ++EEEEEE E +   EE+
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 26/44 (59%), Positives = 35/44 (79%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E+EEE+E+EE+EEE+E EEEE ++E+EEEE E +   EEE E S
Sbjct: 446 EEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGS 489

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
             +E+EEE+E+EE+EE+E +EEE E EE+EEE E +   EEE E  S 
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            +++  DEE +E    + +    E+EEEEEEEEEEEE  EE+
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           +  EEE+E+EE+EEEEEQE EEE+ E EEEEEE E +   EEE
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 24/44 (54%), Positives = 28/44 (63%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           P + EEED D + EE EE EEE E  E   +EE+EE EE EEE 
Sbjct: 16  PTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 40/47 (85%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           KE EEE  +EE ++EE+ +++++++E +++++++E++E+E+++DS +
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTL 89

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 25/52 (48%), Positives = 42/52 (80%)

Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           W+ K  EKE  DE+EE+E+EE++EEEE+  ++EEE +EEEE+EE++++  ++
Sbjct: 26  WVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV 77

Length = 529

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
             +  E+EDE+EEQ  +E +EEE E  E+E  +  E+   E   +  
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVG 413

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
             E+ +EDEDEE+E+  ++ EEEE E+ EEE  +  E+   E     
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 35/43 (81%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E++D+D E+EEE+    +EE++E++E+ ++E++EEEEEEE  +
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
            +K+  DE+ ++    + +    +EE+EEEEEEEEEE  EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
              +  E+E        E+ ++  E+EEE+++ E+   E+
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 20/44 (45%), Positives = 35/44 (79%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            E++ E+  E+ EEEEE+++  E E+++EE+E+EEEEE+++E D
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318

Length = 319

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +E+E  +E+EE+EEEEE+EE+E +EE+ E+EEEEEE E +   +
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           P + EE DEDE++EEE+  +E EE+E ++ EEE  +  E+   E S 
Sbjct: 364 PIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 17/44 (38%), Positives = 34/44 (77%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E   +DEDEE ++++ +EEEE+ +  +EEE+EE+E+ ++E+++ 
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 4/48 (8%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQE----EQEEEEEEEEEEEEEEEED 156
           +E   E++ E +++E+  +     +    E+EEEEEEEEEEEEEEEE+
Sbjct: 835 QELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 22/70 (31%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 91  DDQANWSRGNPMVSCVFWMI---KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
           +++  +  G+   +     I     K++EEE ++++++    +++EEE+EE++E++EEE+
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455

Query: 148 EEEEEEEEDS 157
           EEEEEE E+ 
Sbjct: 456 EEEEEEAEEE 465

Length = 482

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 19/44 (43%), Positives = 32/44 (72%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           K    E + +E E E+  EE+E+ EE+EEEEEEE+E+ +++++D
Sbjct: 152 KLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDD 195

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 20/43 (46%), Positives = 36/43 (83%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +++EED+D++ EEEEE  +  ++EE EE+E+ ++E++EEEEE+
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 15/46 (32%), Positives = 35/46 (76%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
               ++EDE+++ ++ EE+EE+ +  ++EE+EE+E+ ++E++EE+ 
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
                 EE+        E++ +  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
             +   ++E +E    + Q    E+EE+EEEEEEEEE  EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 20/44 (45%), Positives = 37/44 (84%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E EE+D+D+ +EEEE+ +  +E+E++E+E+ ++E++EEEEEE+ 
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 37/52 (71%)

Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            F + + +E EEE+ED   +E+EE ++++ +EE+E+ +  +EEE+EE+E+  
Sbjct: 313 NFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSD 364

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 25/46 (54%), Positives = 40/46 (86%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           + KEK+++    +++EEEE+EE+E++EE++EEEEEE EEE+EEEE+
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 37/43 (86%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
           M++ K KE E ED ++E+E+++EEEEE+EE++E+ ++++++++
Sbjct: 155 MLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 18/42 (42%), Positives = 36/42 (85%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           E +++D +EE+E+ +  +EEE++E+++ ++E++EEEEEEE+E
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 8/41 (19%), Positives = 22/41 (53%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
           P   +  +E+        +++++  E++EE+++ E+   EE
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 24/45 (53%), Positives = 37/45 (82%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K+K    + +E+EEEEE+E++EE++E+EEEE EEE+EEEEE++  
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 20/44 (45%), Positives = 37/44 (84%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +E+++E + +    ++++EEEEE++E++EEE+EEEEEE EEE++
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 24/48 (50%), Positives = 39/48 (81%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           K K+K+     +++EEEEE++E++E+E++EEEEE EEE+EEEEE+  +
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 22/46 (47%), Positives = 39/46 (84%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           + K+++++     +++EEE+EEE+E++E+E+EEEEEE EEE+EEE+
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470

Length = 482

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 37/47 (78%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            K    E++ ++ E E+ +E++E++E+EE+EEEEE+E+ +++++++D
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 101 PMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           P V   F   K      +D  E++E E++  +E+E++E   EE+E E  EEEE+E+
Sbjct: 15  PAVLLTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEE 70

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 21/51 (41%), Positives = 38/51 (74%), Gaps = 4/51 (7%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE----EEEEEEEEEEED 156
           + P++    D+D+E E+E++ +EE+++EE+EEEEE    ++E+EE+E  ED
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195

Length = 2849

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           + E+ED+ +E E++++ EEEE        E+ +   EE E  +
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGE 265

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 21/49 (42%), Positives = 39/49 (79%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
             + ++KE++ +    +++EE+EEEE+++++EE+EEEEEE EEE+EE+ 
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470

Length = 482

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 22/44 (50%), Positives = 33/44 (75%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
             +EEED DE+    E++ +E E E+ +EE+E++EEEEEEEEE+
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 14/48 (29%), Positives = 39/48 (81%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           I+   KE E+E  E+E+++E++++++ +E E++++++++E++E+E+D 
Sbjct: 38  IRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 22/43 (51%), Positives = 34/43 (79%)

Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            +EED +E  E+ EE+EEE++  E E+E+EE+E+EEEEE++D 
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDE 316

Length = 319

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 19/47 (40%), Positives = 32/47 (68%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
               EK    E + +E E E  +EE+++++EEEEEEEEE+E+ +++D
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 18/44 (40%), Positives = 38/44 (86%), Gaps = 1/44 (2%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           ++K +E E E+ +EE+E++EEEE+EE EEE+E+ +++++++++D
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEEEE-EEEDEDFDDDDDDDDDD 199

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E+   E  +EEEE EEEEE+E+++E   +E  ++EE EED  
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDV 423

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 20/44 (45%), Positives = 32/44 (72%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
           KPK+++   + +E  +E + EE++ QEEQEEEE EEE ++EE +
Sbjct: 196 KPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239

This family consists of several mammalian specific proacrosin binding protein sp32 sequences. sp32 is a sperm specific protein which is known to bind with with 55- and 53-kDa proacrosins and the 49-kDa acrosin intermediate. The exact function of sp32 is unclear, it is thought however that the binding of sp32 to proacrosin may be involved in packaging the acrosin zymogen into the acrosomal matrix. Length = 243

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 21/44 (47%), Positives = 32/44 (72%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E+EEE+E+EE++E EE+E E+E+EE+E E +   EEE E   + 
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           ++D  +E+ +E    + +    +EEEEEEEEEEEEE  E+ 
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           I  +E +E++++EE++  +E EEEE ++ +EE  +  E+   E   D 
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 35/49 (71%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           K  +K  E  ++++EEE+++++++    +++EEEEEEE+E++EEE    
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458

Length = 482

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
              ++ EDED+ +E+E++ + EEE+    +   E+ +   EE E  
Sbjct: 219 ADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESG 264

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 106 VFWMIKPKEKEEEDEDEEQE------EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
             W    K+K  + ++ EQ+         E E+   + + EEEE+EEEEEEE+E+E   
Sbjct: 351 ALWETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPS 409

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           +KE E  D E EEE+++  ++ +E+ +EE  EE+EEE  EEE++
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEA 167

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 108 WMIKPKEKEEED---EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           W I  K+  E D   ED +  E   Q EEEE  ++E EE  E E+ E  EED+R
Sbjct: 366 WKIDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDAR 419

Length = 449

>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 21/43 (48%), Positives = 35/43 (81%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           K K+ +DE+++ ++ +  EE+E +E++EEEE EEEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285

PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
              +E +++++E+EE+   E EEE+ E  EEE  +  E+   E  S 
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSD 411

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 12/45 (26%), Positives = 30/45 (66%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           K  E++ + ++++Q EE +Q++  EQE  ++ E+E    +E++++
Sbjct: 75  KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119

Length = 387

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           I P            E E ++E+ E+ ++ +E+E+E++EEE +   D
Sbjct: 30  IDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPD 76

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 13/47 (27%), Positives = 28/47 (59%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
            +++E++E+E++ +E E+EE E+ EE+  +  E+   E   +  S  
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDS 416

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +  D +E  E+E+E+EE+   E +EEE E+ EEE  +  ED
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSRED 403

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
              +  E+E        E++++  E EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
            EED         + ++E+E E+ ++EE++EEEEEEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179

Length = 2849

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 19/45 (42%), Positives = 32/45 (71%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           + ++   E +DEE+E+EEE+EEE+E E   +E  ++EE EE++ E
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVE 424

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 22/33 (66%), Positives = 24/33 (72%)

Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
              E EEE+EEEEE  E+EEEEEEEEE   EEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
             E+++EEEEQE++EEEEEEEE EE E EE   +L
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLL 377

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 17/48 (35%), Positives = 36/48 (75%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            + +E+EE+  D+E EE+++ + EEE+E+ +  +EEE+EE+E+ +++ 
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 18/45 (40%), Positives = 34/45 (75%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
             EE+ E+  ++ EEE+EE++  E ++E+EE+E+EEEEE++++  
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318

Length = 319

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
               E EE+EEEEE+  +EEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
             +  EED DEE  ++++ +  E+ E   EE E  +E EE+E E +
Sbjct: 223 GDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEAT 268

Length = 620

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            + +  +EE ++    + +    EEEEEEEEEEEEEE S
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317

Length = 330

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 41.2 bits (96), Expect = 9e-05
 Identities = 21/46 (45%), Positives = 35/46 (76%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           E E+ED+D+E+++EEE+EEEEE +  ++E+EE+E  E+   E S +
Sbjct: 158 EDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEV 203

Length = 2849

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E E  D E  E+E+  +E+E ++Q EEEE    +   E+ D+
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDA 256

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
           +  K+  +E+  E    + +    EE+EE+EEEEEEEE  EEE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 111 KPKEKEEEDED------EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            P  KE +  D      +  + EE  E+E+E+EEQ  +E EEEE E+ EEE S
Sbjct: 346 NPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGS 398

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           E  EE  ++ +EEEEE +  E ++E EE+E+EEEEE+++E + 
Sbjct: 277 EDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 22/44 (50%), Positives = 35/44 (79%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
             K     ++ E+EE+EE+E++EEE+E+EE+E EEE+EEEEE++
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           +   E +++EEE+E+EEEEE E++   +E  ++EE EE++   
Sbjct: 383 DANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVES 425

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E ED + E+++EEE++EEEE+EE E+E   +E  ++EE E+  
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDD 422

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
             E++ EEEE+++E+EEEEEEE EE E EE 
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 32/44 (72%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E+E+ED+ EE +++E++ E  E  E E E + E+ EE+E+E+D+
Sbjct: 648 EEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDA 691

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           K     +E  E  E  EEE          EEEEE E E+EE
Sbjct: 10  KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEE 50

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 34/44 (77%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E+++E+E++E+EEEEE E+E   +E  ++EE EE++ E + EDS
Sbjct: 387 ERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDS 430

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 33/45 (73%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E    + D+E+EE+EE+EEEE+++E   +E  ++EE EE++ +S+
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESK 426

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E E+ + + + EEEE++EEEEE++E E   +E  ++EE EE+D 
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDV 423

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           + EDE+E+ E  ++ +E+ ++E  EE+EEE  EEEE E E  + 
Sbjct: 131 DSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKA 174

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            + +E+E  + E E+  E EQ E+ EE+    E     E++
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           +I  +E+EE  + E +E  E ++ E  +E+    E     E+E E+ED 
Sbjct: 388 LISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436

Length = 449

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 29/45 (64%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           + K+KE++  +E Q+++  ++E  +Q E+E    +E++++ EE  
Sbjct: 80  QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAA 124

Length = 387

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
               E E+EEEEE+E  EEEEEEEEEEE   EE+ R
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVR 335

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
           I P+ +      E+++EEEEQE+EEE+EE+EE EE E EE   
Sbjct: 333 ILPQGRCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/33 (54%), Positives = 26/33 (78%)

Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
           + EQ++EEE++E+EE+EE+EEE EE E EE   
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           +  E EEEDED+ +E +++++E E  E+ E E E + E+ EE+E++  
Sbjct: 643 QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDD 690

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K     E+ ED+   E+E++E EEE EE++EE  +E E+E EE+ +S
Sbjct: 70  KEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
             ++KE++ + E+++EE E+E EEE EE  +E E+E EE+ E   +  I
Sbjct: 74  NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEI 122

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           + PK    ++E+EE  E   QE  E   E++  +E +EE +EEE++
Sbjct: 13  LPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDD 58

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
             K+++EE+E+EE E EE  EEE+  E  E+E  + + E+  E E  +
Sbjct: 96  LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 25  KGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 84
           + + FE+LC NY  E LQ  F+   F    E Y +EG+    +EF        L E  P 
Sbjct: 393 RAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSPG 442

Query: 85  GLLCVLD 91
             + ++D
Sbjct: 443 TTVALVD 449

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
           W I  +    +DE+EE EEE   E E+E   + + E +E+++ E
Sbjct: 85  WKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKRE 128

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 111 KPKEKEEEDEDE---EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
              E EE+ +D+   E E+EE+ E E E +E    +E E  + E E  +
Sbjct: 207 TESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGE 255

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E+EEE+E+E++ EEEE E+EEE+EE E +   EEE E   E D 
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 22/45 (48%), Positives = 38/45 (84%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K    + ++EE+EEE+E++EEE++EE+EE EEE+EEEEE++++ +
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477

Length = 482

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 6/49 (12%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE------EEEED 156
           E++    D    ++++++E+E+ +++E++EEEEEEEEE      E+EED
Sbjct: 142 EEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEED 190

Length = 2849

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 105 CVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEE 138
           C +   + K++EEE EDEE+EEEEE+ EE E EE
Sbjct: 339 CTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           P   E+ +   E+ E  ++ EE+E E  + E EE E +  E  EDS
Sbjct: 241 PDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDS 286

Length = 620

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
           K++EE  E  ++E E++  EE E+E+++E+E E E E E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           I P    EE+E+ E EE+EE  E+E  +  +E+ EEEEEEE +  +D
Sbjct: 134 IVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 23/44 (52%), Positives = 26/44 (59%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           P    E+DE   +    E  EEEE EE EE+EEEE EEE EE E
Sbjct: 60  PDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFE 103

Length = 306

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
               +  EEE        E++++  E+EEE++D+
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDA 292

Length = 584

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 14/39 (35%), Positives = 29/39 (74%)

Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            +ED    +    ++++E E++++++EE++EEEEEEEE+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179

Length = 2849

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
             E E++ +++E +++ E+EE    +   E+ +   EE E  E ++
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEA 268

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 89  VLDDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
            +DDQ  ++R       V   +       E+  +E E  + ++ E+E + +E+E++++ E
Sbjct: 188 CVDDQQAFAR-------VVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGE 240

Query: 149 EEEEEEEDS 157
           EEE    DS
Sbjct: 241 EEESGSSDS 249

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
              + E    E  +EEEE EE+EEEE+E+E   +E  +D 
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDE 416

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 101 PMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           P+V  +  M K   +    +DEE+E EEE  +E EQE+  E + E +E+++ E    + 
Sbjct: 76  PLVRNLPAMWKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKT 134

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
              + EEE+ +EE  +E EQE+  E + + +E+++ E  + + E++  
Sbjct: 92  SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKP 139

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
               EE+  +E   ++   + EE ++ +EE +EE+EE  + E+D
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDD 146

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 97  SRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
           + GN            +++E ED+  +++EE+E   EE++ E  EEEE+EE E
Sbjct: 20  TFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           I+    E +DE+EE EEEEE+E+E+E   +E  ++EE EE++ E +  
Sbjct: 381 IEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYE 428

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 21/43 (48%), Positives = 33/43 (76%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
              K  +EED+D++ +  EE+E +E++EE+E EEEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285

PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K   + EE  +  +  EEE          EEEEE E E+EE  EE  
Sbjct: 10  KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           K  +K EE  ++ + E E++  EE + E+E+E+E E E E E E  ++
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 111 KPK---EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           KPK   E E  +E+EE+ EE E+E EE+  +++  +   EE +E+EE   R
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190

This family is a region of the Myb-Related Cdc5p/Cef1 proteins, in fungi, and is part of the pre-mRNA splicing factor complex. Length = 363

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           + +EEE EDEE+EEE E +   E+E +   E + + EE EE+ + R
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERR 506

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 19/44 (43%), Positives = 37/44 (84%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           + EEE+ED +  +EEE EE+E+ +++++EEEEEEE+E+++++ +
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 16/42 (38%), Positives = 33/42 (78%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
             +E  ++ EE+EEE++  E E+++E++E+EEEEE+++E ++
Sbjct: 278 DLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 16/49 (32%), Positives = 35/49 (71%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
              K+ ++  E  E++ EEE++E++++    +++EEEEEEE+E++E+ +
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455

Length = 482

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            +E+ E ++ E  EE+    E     E E E+E+E EE + EEE+
Sbjct: 402 AEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446

Length = 449

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
               + EEEE+EEEE  EE+EEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           +     + + +      EE      +  +E E E  E+    
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423

Length = 460

>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366)

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 14/42 (33%), Positives = 15/42 (35%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           EEED                 E    E E E E EEE E+ S
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKS 156

This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 227 and 387 amino acids in length. Length = 213

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 34/45 (75%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           +  EE+E++    +EE++EE+E  + E++EEEEEEE+E++++ S 
Sbjct: 340 DDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            KE+ED+D+ +EEE    +   ++     EE E  E E  E  +
Sbjct: 230 PKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASA 273

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 9/47 (19%), Positives = 30/47 (63%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
            ++K+  +++  ++ E+E+   +EQ++Q EE  ++   ++++ E++ 
Sbjct: 92  LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138

Length = 387

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           E+ ++ EE+ EE E EE  E E +EE  EEE E E  +EE ++I
Sbjct: 3   EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKI 46

Length = 191

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 12/48 (25%), Positives = 36/48 (75%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
              ++  +E E+E  EEE++ EE+++ ++ E+E++++++++E++E++ 
Sbjct: 36  NAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDED 83

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 16/45 (35%), Positives = 37/45 (82%)

Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
           ++I   +++E+++D+++E++EE+EEEEE+ +  ++E+EE+E  E+
Sbjct: 151 FVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195

Length = 2849

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
           P     E E+EE+EEEE  EEEEE+EE+EE   EEE
Sbjct: 298 PPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            EE D+DE++ E  E  E E + + E+ EE+E+E++ E  E 
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEG 696

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 14/42 (33%), Positives = 29/42 (69%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           EEE +DE + ++  ++ EE+ ++ EE +EE+EE  + E+++ 
Sbjct: 107 EEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDED 148

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 7/46 (15%), Positives = 34/46 (73%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
              + +++D+ ++ + +++ ++E++ E+ ++++ ++E+EE++E ++
Sbjct: 132 DDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177

Length = 509

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           + +E+E EDE+EE+E E +   EEE E   E + + EE EE+ E  
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERR 506

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           E+EEE+E E +EEE E EEEEE+ E +   EEE E   E + D
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGD 495

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 21/45 (46%), Positives = 35/45 (77%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            E+EEED D   EEE+E++E+ + E+ EEEEEEE+E+++++  +S
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAES 386

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
            +    +  E+E        E +++  ++E+E+++ E+   EE
Sbjct: 257 RLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
           +EE ED+  +E+EE E   E++E E  EEEE+EE E
Sbjct: 37  DEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 13/51 (25%), Positives = 32/51 (62%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           +I  + +     +E+    +    +++ E+++E++++EE++EEEEEE+  I
Sbjct: 130 IIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180

Length = 2849

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 9/47 (19%), Positives = 28/47 (59%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           +P+  + ED ++E + +E++++++ +EE+    +   E+ +   E+ 
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEM 261

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
           PK K+E+   + QE  +E + EE+Q ++E+EEEE EEE ++EE
Sbjct: 195 PKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237

This family consists of several mammalian specific proacrosin binding protein sp32 sequences. sp32 is a sperm specific protein which is known to bind with with 55- and 53-kDa proacrosins and the 49-kDa acrosin intermediate. The exact function of sp32 is unclear, it is thought however that the binding of sp32 to proacrosin may be involved in packaging the acrosin zymogen into the acrosomal matrix. Length = 243

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 17/44 (38%), Positives = 31/44 (70%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           K KEEE + +E E+  E ++++++EE+ E EE+E+ ++E E  D
Sbjct: 77  KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWID 120

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            E+  E +D++ EEEE + EE+E  + E E  + E ++E E  DS
Sbjct: 88  AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDS 132

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            +  + E E+  + E+ E+ EE+ +  +     E+E E+E+E E++
Sbjct: 395 EEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEA 440

Length = 449

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 12/46 (26%), Positives = 30/46 (65%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
            + ++K  +  +E+++++E+Q+ EE Q++Q  E+E  ++ E+E   
Sbjct: 67  QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLA 112

Length = 387

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 9/45 (20%), Positives = 27/45 (60%)

Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
           + +           E E ++E+ E++++++E+E+E++EE++ +  
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           E+++E+EE+E++EE+EEEEE EE E EE   
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
               +E  E  E  EE+          EEEEE E ED  +L
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELL 52

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
              + E+EDE+ E+E EEE EE  ++ E+E EE+ E   E+E    S
Sbjct: 80  DKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 17/47 (36%), Positives = 33/47 (70%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
           +E +EE+++    E++E + + E+E++E EEE EEE+EE  +E+ + 
Sbjct: 63  EEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           KP   +EE+E+  +   +E  E   +++  +E +EE +EEE++  
Sbjct: 16  KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRF 60

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +P E E+E++ E + E +E    +E E  + E E  EEE  + ++D
Sbjct: 219 QPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQD 264

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 6/46 (13%), Positives = 15/46 (32%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           + +  +   +     + + +      EE      E  +E E E  +
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPE 418

Length = 460

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E+E+  +   Q     Q + E      EE      E  +E E  
Sbjct: 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPE 415

Length = 460

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 12/47 (25%), Positives = 34/47 (72%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
           + +E+D++++ +++ + E+EE++E +E E+  ++++   +E+DS  L
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEAL 197

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 8/45 (17%), Positives = 34/45 (75%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            + +++ +D++ +++++ E+++E ++ ++ ++E+EE++E +E + 
Sbjct: 136 DDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEK 180

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 11/44 (25%), Positives = 33/44 (75%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           + + +D+D + ++++E ++E++ ++  ++E+EE++E +E E+ S
Sbjct: 139 DDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182

Length = 509

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           + P+     + + +        E  E EE+ +E ++ + ++ EE + 
Sbjct: 259 LLPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQ 305

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            P  ++    D + + + E EEEEE E+ E E+EE+EEE+++++ D
Sbjct: 29  NPLSQDLPGLDYDYDSDAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74

The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 12/46 (26%), Positives = 15/46 (32%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           P   E    +       +Q     Q   E+  EE E    E E DS
Sbjct: 144 PGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDS 189

Length = 413

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 14/32 (43%), Positives = 29/32 (90%)

Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            EE++ +++E++E+EE++EE+++E+E EEE+S
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
             D + E++      E EE ++ E+EEEEE+E ++    D   L
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216

Length = 619

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
                EE ED+   E   + E E+ E+ EE EEE+ EEE    +
Sbjct: 293 SGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           K++ +E  D++ EEE E E+E + EE  E++ ++EEEE+ + ED
Sbjct: 160 KKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           +    E  EEEEE+ E+EEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 18/61 (29%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQ------------------EEEEEEEEEEEEEEEE 155
           E + +D + + E  E++   E Q E                   EEEEEEEEEEEEEEEE
Sbjct: 820 ETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEE 879

Query: 156 D 156
           +
Sbjct: 880 E 880

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 11/44 (25%), Positives = 33/44 (75%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           KE       +E EEE  +EE++++E+ +++++E+E+++++++++
Sbjct: 34  KENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDE 77

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
           E EE ++D   E+EE++   EE E +  EEEE+EE E
Sbjct: 36  EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 19/43 (44%), Positives = 33/43 (76%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           ++++E+D+DEE +EEEE+EEEE +   +E+EE+E  E+   E+
Sbjct: 158 EDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Length = 2849

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 17/41 (41%), Positives = 30/41 (73%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
            ++EEEDE+EE+EE+E++   +E  + EE EE++ E + E+
Sbjct: 389 DDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           E+  E+E +++E EQ  E + ++ EEEE E EE+E+ ++E 
Sbjct: 76  EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEG 116

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           E E+ +  EE     E     E E ++E+E EE + EEEEE 
Sbjct: 407 EAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448

Length = 449

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 9/45 (20%), Positives = 27/45 (60%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           K +++ EE + ++  E+E  ++ E++    +E++++ EE  ++  
Sbjct: 84  KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAA 128

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 111 KPKEKEEEDE-----DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           K KE+++ +E       EQE  ++ E+E    ++++++ EE  ++   ++ 
Sbjct: 82  KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQK 132

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 10/45 (22%), Positives = 30/45 (66%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           + ++K+E+ + EE ++++  E+E  ++ ++E    +E++++ EE 
Sbjct: 79  EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123

Length = 387

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
               E +EE+EEEEE  EEEEEEEEE+ R  
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTF 330

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
               E +EEEEE+EE  E+EE+EEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
           W+   ++ EEE++++E+EEEEE+E EE + E+   
Sbjct: 341 WVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 10/49 (20%), Positives = 33/49 (67%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
               +    D +E+ +++EE +EE+E+  + E++E++++++++++  +R
Sbjct: 113 EPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
            D +EE ++E   ++     E++++++EE +EE+EE   S 
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSE 144

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 8/45 (17%), Positives = 32/45 (71%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
             + E++DED++ ++ ++++EE+++ ++ E+  ++++   +E++ 
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDS 194

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 9/44 (20%), Positives = 33/44 (75%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           + +++DED++++++++  ++E++E++E +E E+  ++++   D 
Sbjct: 148 DDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 11/45 (24%), Positives = 32/45 (71%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E ++ED+D++  ++E++E++E +E ++  ++++   +E++ E  R
Sbjct: 154 EDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALR 198

Length = 509

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 16/31 (51%), Positives = 27/31 (87%)

Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
            EE+E +++EE EE+E++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
                D E+ E++   E   + E E++E+ EE EEE+ EE+ 
Sbjct: 291 SASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEG 332

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
           + +  E  +EEEEE EE+EEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +  +  EEEDE+E +        + + +E   E+E+E+EE++EE E 
Sbjct: 5   VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAES 51

Length = 1033

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E +E DEDEE +E  E   E+E E    +EE+ E+ +E E + + 
Sbjct: 948 ESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAY 992

Length = 1001

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 107 FWMIKPK-----EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           F+  K K     E+ EE+ D E E   E +  ++++E   EE+     EE+E+ D
Sbjct: 221 FFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPD 275

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
            + +EEE ED E+E  + +E+   +   +   + E + ++E   DS 
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 16/47 (34%), Positives = 32/47 (68%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K KE+E + ++ EQ  E + +++EE+E + EE+E+ ++E E  + +S
Sbjct: 77  KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVES 123

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 14/41 (34%), Positives = 27/41 (65%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            ++D+DEE+E E E++E+ + E +  + E ++E E  + ED
Sbjct: 94  SDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSED 134

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E+ED D+E E  + + ++E +    E+EEE++E  ++ +EDS
Sbjct: 108 EDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           ++E E+  E ++ E  +E+   +E     E+E E+E+E EE  
Sbjct: 399 QREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQ 441

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
            + + E+ E  E++    +     ++E E+E+E EE + EEEEE
Sbjct: 404 ERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEE 447

Length = 449

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
             K   ++E  +  E+E    QE++++ EE  ++   ++++ EE 
Sbjct: 93  QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137

Length = 387

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE-----EEEEEEEEEEDS 157
            +   +E E  +E EE E E    E EE E +     E+ E +E +ED+
Sbjct: 247 SEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDT 295

Length = 620

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 19/45 (42%), Positives = 32/45 (71%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           +  E E+  EE++E    E++E++ + E+E+EE EEE EEE+E+S
Sbjct: 58  ETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEES 102

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
           EK E+ E+E +E E E+  E+E EE+  EEE E E  +EE+ 
Sbjct: 3   EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQA 44

Length = 191

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 8/49 (16%), Positives = 34/49 (69%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            +   + +++D+DE+ +E+++ ++ ++++E+++E +E E+  ++++   
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189

Length = 509

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 15/31 (48%), Positives = 26/31 (83%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
            +E+E +D+E++EEEE +EE++ E++ EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 17/47 (36%), Positives = 33/47 (70%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K  +K ++ E +E  +++++EE E ++E + EE  E++ ++EEEEDS
Sbjct: 153 KKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 20/36 (55%), Positives = 24/36 (66%)

Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E ++    +  EEE+EE EEEEEEEEEEE EE E  
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 16/44 (36%), Positives = 30/44 (68%)

Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           +EEE++  +  EEE QEE +E++E++++EE E +  +   E+ R
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQR 309

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 17/42 (40%), Positives = 29/42 (69%)

Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
            +E+++  +E+  EE E + EQ+EE +E E E+E +E D+RI
Sbjct: 2   SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARI 43

Length = 193

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
             E + ++    E+ E E    E+ E EEE E+ E+E +   RI
Sbjct: 359 PLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402

Length = 776

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 15/45 (33%), Positives = 29/45 (64%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           P+E+ EE E  E+ E    +   EQ E+ EEE++++ +++ +E+D
Sbjct: 336 PREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDD 380

Length = 390

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +   EE E+ E  E+ E   ++   EQ EE EEE++++ +++ D
Sbjct: 334 ENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWD 377

Length = 390

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 11/42 (26%), Positives = 26/42 (61%)

Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
           D+ +++EEE    +E++ +E +  + ++++EEE + E  R  
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTS 264

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDS 157
                 EE++EEEEEEEE+EE EEE +
Sbjct: 72  AAAAAAEEKKEEEEEEEEKEESEEEAA 98

Length = 106

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           +DEE++ + + EE EE EE+ E+ E+  +EE+EE E+
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEE 54

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
           E++  DE EE+E E+ +EE  +  E    E   +   + E 
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSES 418

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           MI  K +      EE     +    ++ +E E+E++++EE++EEEEE+
Sbjct: 129 MIIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEE 176

Length = 2849

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 13/40 (32%), Positives = 27/40 (67%)

Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           E + E +  + E EEE+++  ++ +E+ +EE  EE+EE++
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEA 161

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K KE E+  E ++ ++EEE+ E EE E+ ++E E  + E ++E E S
Sbjct: 84  KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            + EE  + EQ E  E++    +     E+E E+E+E EE +  
Sbjct: 400 REAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            +E EE  E E+ E  EE     E     E+E E+E+E EE + +
Sbjct: 399 QREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443

Length = 449

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
               + E+EEEEE+E  EE+EE+EEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           K    + +++E+EEEEE E EE  EE++ +E  E+E  + + E  R
Sbjct: 92  KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRR 137

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 12/43 (27%), Positives = 29/43 (67%)

Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E++D+DEE +EE+E+  + E +E +++++++++    E    R
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLER 167

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 9/45 (20%), Positives = 33/45 (73%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
            + ++ D+D+  +++++++++E+ ++ + ++E+EE++E +E E  
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 8/47 (17%), Positives = 33/47 (70%)

Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
               + +++D+D + ++ ++ +++E+ +E +++++ ++E+EE++E  
Sbjct: 130 ADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176

Length = 509

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 117 EEDEDEEQEE---EEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
            E E +        E  E EEE +E ++ + ++ EE ++  E+
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 16/46 (34%), Positives = 31/46 (67%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
           K  +K+E  E  ++++EEE E E+E + +E  E++ ++EEEE+ + 
Sbjct: 156 KKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDS 201

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
           ++    +  +EEEEE EEEEE+EE+EE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
           E +E++E +E  E+  ++E E     EE+ E+ +E E +   DSR
Sbjct: 951 ETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995

Length = 1001

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 11/42 (26%), Positives = 30/42 (71%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
           K+  E +++E   EEE ++++ E  +Q  ++++E++++EE++
Sbjct: 71  KQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
           K  E ED++E++ E EEQ  EE+ ++ E E  E++E E E ++D 
Sbjct: 150 KIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDK 194

Length = 197

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 11/45 (24%), Positives = 31/45 (68%)

Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
           + K  +KEE   ++E++E  ++++   + +++EE++++E E+ E+
Sbjct: 544 VWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588

Length = 651

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 135 EQEEQEEEEEEEEEEEEEEEED 156
                 EEE++EEEEEEEE++D
Sbjct: 61  AAAAAAEEEKKEEEEEEEEDDD 82

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEE 154
                E+EE+EEEEEEEEEEE EEE
Sbjct: 71  AAAAAEEEEEEEEEEEEEEEESEEE 95

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105

>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 8/46 (17%), Positives = 23/46 (50%)

Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
              E E E   E   + ++++++  +E++   E   +++ + E+E 
Sbjct: 94  FLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKER 139

Length = 657

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PTZ00014	821	myosin-A; Provisional	100.0
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	100.0
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	100.0
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	100.0
COG5022	1463	Myosin heavy chain [Cytoskeleton]	100.0
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	100.0
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	100.0
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	100.0
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	100.0
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	100.0
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	100.0
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	99.98
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	99.98
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	99.97
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	99.97
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	99.97
KOG0161|consensus	1930		99.97
KOG0164|consensus	1001		99.96
KOG0163|consensus	1259		99.94
KOG0160|consensus	862		99.92
KOG0162|consensus	1106		99.92
KOG4229|consensus	1062		99.9

>PTZ00014 myosin-A; Provisional

Probab=100.00  E-value=3.1e-35  Score=277.19  Aligned_cols=103  Identities=28%  Similarity=0.359  Sum_probs=99.7

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|..|+|.||++||+||++||.|||+|
T Consensus       461 ~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~l  540 (821)
T PTZ00014        461 KVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI  540 (821)
T ss_pred             CceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      |||+|++|++||.+|+.++..+.
T Consensus       541 LDEec~~p~~tD~~f~~kl~~~~  563 (821)
T PTZ00014        541 LEDQCLAPGGTDEKFVSSCNTNL  563 (821)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998654

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=100.00  E-value=6.2e-35  Score=270.83  Aligned_cols=103  Identities=40%  Similarity=0.717  Sum_probs=99.7

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|.+|||+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++||+||+++|.|||++
T Consensus       364 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~l  443 (677)
T cd01383         364 GRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSL  443 (677)
T ss_pred             cceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++|++|++||.+|+.|+....
T Consensus       444 Ldee~~~p~~tD~~f~~kl~~~~  466 (677)
T cd01383         444 LDEESTFPNATDLTFANKLKQHL  466 (677)
T ss_pred             hHHHHcCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998654

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=100.00  E-value=8.7e-35  Score=269.87  Aligned_cols=102  Identities=40%  Similarity=0.621  Sum_probs=99.0

Q ss_pred             ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccccc
Q psy7599          11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL   90 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsLL   90 (161)
                      .+||||||||||+|..|||+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++|++||.++|.|||+||
T Consensus       361 ~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lL  440 (677)
T cd01387         361 LSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRIL  440 (677)
T ss_pred             ceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChhHHHHHHhCC
Q psy7599          91 DDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        91 DEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      |++|++|++||.+|+.++..+.
T Consensus       441 dee~~~p~~td~~~~~kl~~~~  462 (677)
T cd01387         441 DDQCCFPQATDHTFLQKCHYHH  462 (677)
T ss_pred             HHHhcCCCCchHHHHHHHHHhc
Confidence            9999999999999999997654

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=100.00  E-value=1e-34  Score=269.18  Aligned_cols=103  Identities=39%  Similarity=0.675  Sum_probs=99.4

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|.+|||+|||||||||+||++|++++|..++++|.+|||.|.+|+|.||++||+||++||.|||++
T Consensus       361 ~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~l  440 (671)
T cd01381         361 RNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSL  440 (671)
T ss_pred             cceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCccee
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++|++|++||.+|+.++..+.
T Consensus       441 LDee~~~p~~td~~f~~kl~~~~  463 (671)
T cd01381         441 IDEESKFPKGTDQTMLEKLHSQH  463 (671)
T ss_pred             chHhhcCCCCCHHHHHHHHHHHh
Confidence            99999999999999999997643

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=100.00  E-value=6.2e-35  Score=281.59  Aligned_cols=105  Identities=38%  Similarity=0.668  Sum_probs=100.2

Q ss_pred             ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhc-CCCccc
Q psy7599           9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL   87 (161)
Q Consensus         9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~-kp~GLL   87 (161)
                      ..+|||||||+|||+|..|||+|||||||||+|||+|++++|+.+|++|.+|||.|.+|+|.||++|+|||++ +|.|||
T Consensus       426 ~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIl  505 (1463)
T COG5022         426 ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL  505 (1463)
T ss_pred             cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchH
Confidence            4589999999999999999999999999999999999999999999999999999999999999999999997 478999


Q ss_pred             cccccccccCCCCChhHHHHHHhCCC
Q psy7599          88 CVLDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        88 sLLDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      ++|||+|..|.|||++|.++|...-.
T Consensus       506 slLDEE~~~p~atd~s~~sKL~~~l~  531 (1463)
T COG5022         506 SLLDEECVMPHATDESFTSKLAQRLN  531 (1463)
T ss_pred             hhhcHHhcCCCCCchHHHHHHHHHhc
Confidence            99999999999999999999987544

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=100.00  E-value=1.1e-34  Score=270.71  Aligned_cols=103  Identities=32%  Similarity=0.569  Sum_probs=99.7

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|.+|||+||||||||||||++|++++|..++++|.+|||+|.+|+|.||++||+||++||.|||++
T Consensus       396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l  475 (717)
T cd01382         396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI  475 (717)
T ss_pred             CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++|++|++||.+|+.++..+.
T Consensus       476 LDee~~~p~~tD~~f~~kl~~~~  498 (717)
T cd01382         476 LDEENRLPQPSDQHFTSVVHQKH  498 (717)
T ss_pred             hHHHhcCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998654

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=100.00  E-value=1.4e-34  Score=268.41  Aligned_cols=103  Identities=40%  Similarity=0.622  Sum_probs=99.9

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|.+|||+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++||+||.++|.|||++
T Consensus       366 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~l  445 (674)
T cd01384         366 KSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIAL  445 (674)
T ss_pred             CeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++|++|++||.+|+.++....
T Consensus       446 Ldee~~~p~~td~~f~~kl~~~~  468 (674)
T cd01384         446 LDEACMFPKSTHETFAQKLYQTF  468 (674)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998754

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=100.00  E-value=2.7e-34  Score=265.72  Aligned_cols=103  Identities=37%  Similarity=0.641  Sum_probs=99.8

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|..|||+||||||||||||++|++++|..++++|.+|||+|..++|.||++||+||.+||.|||++
T Consensus       372 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~l  451 (653)
T cd01379         372 QLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLAL  451 (653)
T ss_pred             cceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++|++|++||.+|+.|+..+.
T Consensus       452 Ldee~~~~~~td~~~~~kl~~~~  474 (653)
T cd01379         452 LDEESRFPQATDQTLVEKFEDNL  474 (653)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHhc
Confidence            99999999999999999997764

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=100.00  E-value=2.5e-34  Score=267.35  Aligned_cols=103  Identities=47%  Similarity=0.822  Sum_probs=99.5

Q ss_pred             ceeeeeecCcccCCCc-CcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          11 RSLGVFKTSLVKHLKG-SCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~-NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      .+||||||||||+|.+ |+|+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++||+||.+||.|||++
T Consensus       376 ~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~l  455 (692)
T cd01385         376 LSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYL  455 (692)
T ss_pred             eEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence            5799999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      ||++|++|++||.+|+.++....+
T Consensus       456 Ldee~~~p~~td~~~l~kl~~~~~  479 (692)
T cd01385         456 LDEESNFPHATSQTLLAKFNQQHK  479 (692)
T ss_pred             hHHHhcCCCCCHHHHHHHHHHHhC
Confidence            999999999999999999987543

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=100.00  E-value=3.2e-34  Score=265.96  Aligned_cols=105  Identities=34%  Similarity=0.581  Sum_probs=100.8

Q ss_pred             ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhc-CCCccc
Q psy7599           9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL   87 (161)
Q Consensus         9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~-kp~GLL   87 (161)
                      ...+||||||||||+|.+|||+|||||||||+||++|++++|..++++|.+|||.|..|+|.||++|++||.+ +|.|||
T Consensus       364 ~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil  443 (674)
T cd01378         364 KNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF  443 (674)
T ss_pred             CcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchH
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             cccccccccC-CCCChhHHHHHHhCCC
Q psy7599          88 CVLDDQANWS-RGNPMVSCVFWMIKPK  113 (161)
Q Consensus        88 sLLDEEc~~p-k~tD~tfl~~l~~~~~  113 (161)
                      ++||++|++| ++||.+|+.|+.....
T Consensus       444 ~lLdee~~~p~~~tD~~~~~kl~~~~~  470 (674)
T cd01378         444 SILDDVCATPHEGTDQTFLEKLNKKFS  470 (674)
T ss_pred             HHHHHHHcCCCCCChHHHHHHHHHHhc
Confidence            9999999999 9999999999987543

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=100.00  E-value=4.6e-34  Score=265.64  Aligned_cols=105  Identities=35%  Similarity=0.602  Sum_probs=100.0

Q ss_pred             ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcCCCccc
Q psy7599           9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL   87 (161)
Q Consensus         9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~kp~GLL   87 (161)
                      ...+||||||||||+|..|||+|||||||||+||++|++++|+.++++|.+|||.|..++| .||++||+||++||.|||
T Consensus       372 ~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil  451 (693)
T cd01377         372 RAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL  451 (693)
T ss_pred             CCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchH
Confidence            3468999999999999999999999999999999999999999999999999999999999 599999999999999999


Q ss_pred             cccccccccCCCCChhHHHHHHhCCC
Q psy7599          88 CVLDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        88 sLLDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      ++||++|++|++||.+|+.++.....
T Consensus       452 ~lLdee~~~~~~tD~~~~~kl~~~~~  477 (693)
T cd01377         452 SLLDEECVFPKATDKTFVEKLYDNHL  477 (693)
T ss_pred             hhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence            99999999999999999999986543

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=99.98  E-value=1.2e-33  Score=262.80  Aligned_cols=103  Identities=42%  Similarity=0.686  Sum_probs=98.9

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|.+|||+|||||||||+||++|++++|..+|++|.+|||.|..++|.||++||+||.+ |.|||++
T Consensus       367 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~l  445 (691)
T cd01380         367 TSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSL  445 (691)
T ss_pred             cceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHH
Confidence            457999999999999999999999999999999999999999999999999999999999999999999996 6999999


Q ss_pred             cccccccCCCCChhHHHHHHhCCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      ||++|++|++||.+|+.|+..+..
T Consensus       446 Ldee~~~p~~td~~f~~kl~~~~~  469 (691)
T cd01380         446 LDEECRLPKGSDESWAQKLYNKLP  469 (691)
T ss_pred             hHHhhcCCCCChHHHHHHHHHHhc
Confidence            999999999999999999987654

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>smart00242 MYSc Myosin

Probab=99.98  E-value=2.5e-33  Score=260.03  Aligned_cols=104  Identities=41%  Similarity=0.707  Sum_probs=100.5

Q ss_pred             ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccc
Q psy7599           9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC   88 (161)
Q Consensus         9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLs   88 (161)
                      ...+||||||||||+|.+|||+||||||||||||++|++++|..++++|.+|||.|..++|.||++||+||.++|.|||+
T Consensus       367 ~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~  446 (677)
T smart00242      367 STYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS  446 (677)
T ss_pred             CceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCChhHHHHHHhCC
Q psy7599          89 VLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        89 LLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      +||++|++|++||.+|+.++..+.
T Consensus       447 lLdee~~~~~~td~~~~~kl~~~~  470 (677)
T smart00242      447 LLDEECRFPKATDQTFLEKLNQTH  470 (677)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHh
Confidence            999999999999999999998754

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>cd00124 MYSc Myosin motor domain

Probab=99.97  E-value=8.9e-33  Score=256.39  Aligned_cols=104  Identities=43%  Similarity=0.720  Sum_probs=100.3

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|..|+|+|||||||||+||++|++++|..++++|.+|||.|..++|.||++|++||.++|.|||++
T Consensus       361 ~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~l  440 (679)
T cd00124         361 SLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSL  440 (679)
T ss_pred             CceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      ||++|++|++||.+|+.++.....
T Consensus       441 Ldee~~~~~~~d~~~~~kl~~~~~  464 (679)
T cd00124         441 LDEECLFPKGTDETFLEKLNNKLK  464 (679)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999999986654

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=99.97  E-value=4.7e-32  Score=254.35  Aligned_cols=112  Identities=24%  Similarity=0.319  Sum_probs=100.4

Q ss_pred             Cccccccccc----------ceeeeeecCcccCCCc------CcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCcee
Q psy7599           1 MYLQLDIGIH----------RSLGVFKTSLVKHLKG------SCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW   64 (161)
Q Consensus         1 ~~~~~~i~i~----------~~IGILDi~GFE~f~~------NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w   64 (161)
                      ||.|++..|+          .+||||||||||+|.+      |||+|||||||||+||++|++++|+.+|++|.+|||+|
T Consensus       353 LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~  432 (767)
T cd01386         353 LFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEV  432 (767)
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            4566665543          5799999999999974      89999999999999999999999999999999999999


Q ss_pred             eeccc-CCcHHHHHHhhcCC--------------CccccccccccccCCCCChhHHHHHHhCC
Q psy7599          65 RHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        65 ~~i~~-~dN~~~ldLI~~kp--------------~GLLsLLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ..+.+ +||.+||+||+++|              .|||+||||+|++|++||.+|+.|+..+.
T Consensus       433 ~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~  495 (767)
T cd01386         433 EFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAY  495 (767)
T ss_pred             cccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHh
Confidence            87555 79999999999865              59999999999999999999999998654

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.97  E-value=4.2e-32  Score=251.23  Aligned_cols=103  Identities=44%  Similarity=0.776  Sum_probs=93.0

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcCCCcccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLC   88 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~kp~GLLs   88 (161)
                      ..+||||||||||+|..|+|+||||||||||||++|++++|..++.+|.+|||.|..++| .||.+||+||.++|.|||+
T Consensus       363 ~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~  442 (689)
T PF00063_consen  363 SSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILS  442 (689)
T ss_dssp             SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHH
T ss_pred             cccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHH
Confidence            478999999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             ccccccccCCCCChhHHHHHHhCC
Q psy7599          89 VLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        89 LLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      +||++|++|++||.+|+.++..+.
T Consensus       443 lLdee~~~~~~sd~~fl~kl~~~~  466 (689)
T PF00063_consen  443 LLDEECLLPRGSDESFLEKLLKRH  466 (689)
T ss_dssp             HHHHHCTSTTS-HHHHHHHHHHHH
T ss_pred             HhhhhhhcccchhhHHHHHHHhhc
Confidence            999999999999999999998765

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>KOG0161|consensus

Probab=99.97  E-value=1.4e-31  Score=266.13  Aligned_cols=107  Identities=36%  Similarity=0.575  Sum_probs=100.8

Q ss_pred             cccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcCCCcc
Q psy7599           8 GIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGL   86 (161)
Q Consensus         8 ~i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~kp~GL   86 (161)
                      ....|||||||+||++|..|||+||||||+||+||++|++++|..+|.+|.++||.|.+|+| .|-+||++||.+ |+||
T Consensus       445 ~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi  523 (1930)
T KOG0161|consen  445 QRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGI  523 (1930)
T ss_pred             ccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhH
Confidence            34478999999999999999999999999999999999999999999999999999999999 799999999995 7899


Q ss_pred             ccccccccccCCCCChhHHHHHHhCCCCC
Q psy7599          87 LCVLDDQANWSRGNPMVSCVFWMIKPKEK  115 (161)
Q Consensus        87 LsLLDEEc~~pk~tD~tfl~~l~~~~~~~  115 (161)
                      ||+||++|++|++||.||+.+|+....-|
T Consensus       524 ~slLdEEc~~PkAtd~tf~~kL~~~~~gk  552 (1930)
T KOG0161|consen  524 LSLLDEECVVPKATDKTFLEKLCDQHLGK  552 (1930)
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHhhcc
Confidence            99999999999999999999999877433

>KOG0164|consensus

Probab=99.96  E-value=1.1e-30  Score=239.78  Aligned_cols=101  Identities=35%  Similarity=0.554  Sum_probs=96.9

Q ss_pred             ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccccc
Q psy7599          11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL   90 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsLL   90 (161)
                      .+||+||||||++|..|||+|||||||||+||++|+..+++.+|++|.+|||.|.+|+|++|..++||++.+..|||+||
T Consensus       375 ~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlail  454 (1001)
T KOG0164|consen  375 TVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAIL  454 (1001)
T ss_pred             eEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhh
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCC-CCChhHHHHHHhC
Q psy7599          91 DDQANWSR-GNPMVSCVFWMIK  111 (161)
Q Consensus        91 DEEc~~pk-~tD~tfl~~l~~~  111 (161)
                      |++|+.|+ .||.+|+.+|-.+
T Consensus       455 De~Cl~~G~vtD~tfL~~l~~~  476 (1001)
T KOG0164|consen  455 DEACLRPGTVTDETFLEKLNQK  476 (1001)
T ss_pred             hHHhcCCCccchHHHHHHHHHH
Confidence            99999996 7999999888654

>KOG0163|consensus

Probab=99.94  E-value=2.6e-28  Score=225.38  Aligned_cols=111  Identities=34%  Similarity=0.532  Sum_probs=103.1

Q ss_pred             Cccccccccc---------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCC
Q psy7599           1 MYLQLDIGIH---------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD   71 (161)
Q Consensus         1 ~~~~~~i~i~---------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~d   71 (161)
                      ||-|++.-|+         .+|||||+.|||.|.+|||+|||||||||+||++|+.++++.+|+.|.+||+.++.|.|.|
T Consensus       432 LFD~lV~~iNqsiPFe~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~D  511 (1259)
T KOG0163|consen  432 LFDWLVGRINQSIPFEKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTD  511 (1259)
T ss_pred             HHHHHHHHhhcccccccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEecc
Confidence            3566666655         5689999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhC
Q psy7599          72 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIK  111 (161)
Q Consensus        72 N~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~  111 (161)
                      |++|++||+.|..|||.|||++.++|+++++.|..+..-.
T Consensus       512 NqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~  551 (1259)
T KOG0163|consen  512 NQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHES  551 (1259)
T ss_pred             chhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHh
Confidence            9999999999999999999999999999999998876543

>KOG0160|consensus

Probab=99.92  E-value=2.2e-26  Score=216.64  Aligned_cols=100  Identities=45%  Similarity=0.732  Sum_probs=97.2

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+|||||++||+.|..|+|+|||||||||+||+.|++|+|+.+|++|..++|.|..++|.||++|+++|.+ |.|+++|
T Consensus       367 ~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~L  445 (862)
T KOG0160|consen  367 ERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILAL  445 (862)
T ss_pred             cceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhc
Confidence            478999999999999999999999999999999999999999999999999999999999999999999997 9999999


Q ss_pred             cccccccCCCCChhHHHHHHh
Q psy7599          90 LDDQANWSRGNPMVSCVFWMI  110 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~  110 (161)
                      ||++|++|++||.+|..+|..
T Consensus       446 lde~c~lp~~t~~~~a~KL~~  466 (862)
T KOG0160|consen  446 LDEECMLPKGTDETLAQKLYQ  466 (862)
T ss_pred             cchhccCCCCCcchHHHHHHH
Confidence            999999999999999998875

>KOG0162|consensus

Probab=99.92  E-value=1.8e-26  Score=212.75  Aligned_cols=101  Identities=32%  Similarity=0.555  Sum_probs=94.5

Q ss_pred             ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhc-CCCccc
Q psy7599           9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL   87 (161)
Q Consensus         9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~-kp~GLL   87 (161)
                      ...+||||||+|||+|.+|||+||||||.||+||+.|++.+++.+|++|.+|||.|.+|.|+||.-++|||+. +|.|||
T Consensus       381 ~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGim  460 (1106)
T KOG0162|consen  381 EEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIM  460 (1106)
T ss_pred             cccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHH
Confidence            4468999999999999999999999999999999999999999999999999999999999999999999997 588999


Q ss_pred             cccccccccC----CCCChhHHHHHH
Q psy7599          88 CVLDDQANWS----RGNPMVSCVFWM  109 (161)
Q Consensus        88 sLLDEEc~~p----k~tD~tfl~~l~  109 (161)
                      ++||+.|...    .|.|++|+.+|-
T Consensus       461 s~ldD~~At~Ha~~~~aDqa~~qrLn  486 (1106)
T KOG0162|consen  461 SALDDVCATAHADSEGADQALLQRLN  486 (1106)
T ss_pred             HHHHHHHHHhccccchhHHHHHHHHH
Confidence            9999999864    578889988875

>KOG4229|consensus

Probab=99.90  E-value=7.3e-25  Score=210.17  Aligned_cols=103  Identities=41%  Similarity=0.749  Sum_probs=99.7

Q ss_pred             ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccccc
Q psy7599          11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL   90 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsLL   90 (161)
                      .+|||||+|||++|..|+|+|+||||||++||.+|++++|..++.+|..++|.|..+.|.||.+|+++|..||+|||.+|
T Consensus       427 ~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~li  506 (1062)
T KOG4229|consen  427 LSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLI  506 (1062)
T ss_pred             ceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhhee
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChhHHHHHHhCCC
Q psy7599          91 DDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        91 DEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      |++|.+|++||.|++.|+-....
T Consensus       507 Dees~fP~~td~tl~~k~~~q~~  529 (1062)
T KOG4229|consen  507 DEESRFPKATDQTLLLKLNMQHG  529 (1062)
T ss_pred             cccCcCCchHHHHHHHHhhhhhh
Confidence            99999999999999999877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		4e-17
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		4e-17
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		1e-16
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-16
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		1e-16
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-16
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-16
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		1e-16
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-16
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		1e-16
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		1e-16
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		1e-16
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		1e-16
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		1e-16
2y0r_X	758	Structural Basis For The Allosteric Interference Of		1e-16
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-16
2y9e_X	758	Structural Basis For The Allosteric Interference Of		1e-16
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		1e-16
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		1e-16
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-16
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		2e-16
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		3e-16
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		4e-16
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		4e-16
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		4e-16
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		4e-16
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		4e-16
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		6e-16
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		6e-16
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		6e-16
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		6e-16
1b7t_A	835	Myosin Digested By Papain Length = 835		6e-16
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		6e-16
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		6e-16
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		8e-16
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		8e-16
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		2e-15
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		1e-14
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		1e-14
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		6e-14
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		6e-14
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		7e-14
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		9e-14
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		9e-14
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		1e-13
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		1e-13
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		7e-13
2x51_A	789	M6 Delta Insert1 Length = 789		7e-13
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		7e-13
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		7e-13
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		7e-13
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		7e-13
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		7e-13
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		7e-13
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		7e-13
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		7e-13
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		7e-13
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		8e-13
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		1e-12
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		1e-12

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 10  HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
           H  +GV      +  + + FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F
Sbjct: 430 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF 489
Query: 70  SDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            DN  C+ L+E K  G+L +LD++    +G+
Sbjct: 490 YDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 10  HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
           H  +GV      +  + + FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F
Sbjct: 430 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF 489
Query: 70  SDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            DN  C+ L+E K  G+L +LD++    +G+
Sbjct: 490 YDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 10  HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
           H  +GV      +  + + FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F
Sbjct: 430 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF 489
Query: 70  SDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            DN  C+ L+E K  G+L +LD++    +G+
Sbjct: 490 YDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 461 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 520
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 521 SQATIDLIDGRQPPGILALLDEQS 544

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 449 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 508
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 509 SQATIDLIDGRQPPGILALLDEQS 532

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 461 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 520
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 521 SQATIDLIDGRQPPGILALLDEQS 544

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 449 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 508
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 509 SQATIDLIDGRQPPGILALLDEQS 532

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 461 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 520
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 521 SQATIDLIDGRQPPGILALLDEQS 544

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 461 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 520
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 521 SQATIDLIDGRQPPGILALLDEQS 544

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 449 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 508
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 509 SQATIDLIDGRQPPGILALLDEQS 532

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 449 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 508
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 509 SQATIDLIDGRQPPGILALLDEQS 532

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 449 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 508
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 509 SQATIDLIDGRQPPGILALLDEQS 532

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   +  +    + FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  D
Sbjct: 457 IGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMD 516
Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGNPM 102
              C+ L+E KP G++ +L+++  + +   M
Sbjct: 517 LQACIDLIE-KPMGIMSILEEECMFPKATDM 546

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV      +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 5   LDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 62
           LD    R+  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI
Sbjct: 448 LDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGI 507
Query: 63  RWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           +W  I+F  D  +C+ L+E KP G+L +L+++  + + +
Sbjct: 508 QWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKAD 545

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   S  +  K + FEQLCINY NE LQ +FN H+F+ EQE+Y KE I W  I+F  D
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 5   LDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 62
           LD    R+  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI
Sbjct: 447 LDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGI 506
Query: 63  RWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           +W  I+F  D  +C+ L+E KP G+L +L+++  + + +
Sbjct: 507 QWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKAD 544

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV      +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 5   LDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 62
           LD    R+  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI
Sbjct: 446 LDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGI 505
Query: 63  RWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            W  I+F  D  +C+ L+E KP G+L +L+++  + + +
Sbjct: 506 AWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKAD 543

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 5   LDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 62
           LD    R+  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI
Sbjct: 442 LDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGI 501
Query: 63  RWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            W  I+F  D  +C+ L+E KP G+L +L+++  + + +
Sbjct: 502 AWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKAD 539

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV      +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 5   LDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 62
           LD    R+  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI
Sbjct: 446 LDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGI 505
Query: 63  RWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            W  I+F  D  +C+ L+E KP G+L +L+++  + + +
Sbjct: 506 AWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKAD 543

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 5   LDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 62
           LD    R+  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI
Sbjct: 446 LDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGI 505
Query: 63  RWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            W  I+F  D  +C+ L+E KP G+L +L+++  + + +
Sbjct: 506 AWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKAD 543

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 5   LDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 62
           LD    R+  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI
Sbjct: 441 LDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGI 500
Query: 63  RWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
            W  I+F  D  +C+ L+E KP G+L +L+++  + + +
Sbjct: 501 AWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKAD 538

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV      +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 450 IGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 509
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 510 SQATIDLIDGRQPPGILALLDEQS 533

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV      +  K + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D
Sbjct: 449 IGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLD 508
Query: 72  NTLCLQLVEGK-PNGLLCVLDDQA 94
           +   + L++G+ P G+L +LD+Q+
Sbjct: 509 SQATIDLIDGRQPPGILALLDEQS 532

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D
Sbjct: 459 IGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIVWEFIDFGLD 518
Query: 72  NTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
              C++L+E KP G+L +L+++  + + +
Sbjct: 519 LQACIELIE-KPMGILSILEEECMFPKAS 546

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 4   QLDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 61
           QLD    R   +GV   +  +    + FEQLCIN+ NE LQ +FN H+F  EQEEY  EG
Sbjct: 448 QLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEG 507
Query: 62  IRWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQ 93
           I W  I+F  D   C++L+E  P G+  +L+++
Sbjct: 508 IEWEFIDFGMDLAACIELIE-XPMGIFSILEEE 539

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 4   QLDIGIHRS--LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 61
           QLD    R   +GV   +  +    + FEQLCIN+ NE LQ +FN H+F  EQEEY  EG
Sbjct: 445 QLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEG 504
Query: 62  IRWRHIEFS-DNTLCLQLVEGKPNGLLCVLDDQ 93
           I W  I+F  D   C++L+E  P G+  +L+++
Sbjct: 505 IEWEFIDFGMDLAACIELIE-XPMGIFSILEEE 536

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           LG+   +  +  + + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D
Sbjct: 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLD 519
Query: 72  NTLCLQLVE--GKPNGLLCVLDDQ 93
              C++L+E    P G+L +LD++
Sbjct: 520 LQPCIELIERPTNPPGVLALLDEE 543

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           LG+   +  +  + + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D
Sbjct: 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLD 519
Query: 72  NTLCLQLVE--GKPNGLLCVLDDQ 93
              C++L+E    P G+L +LD++
Sbjct: 520 LQPCIELIERPTNPPGVLALLDEE 543

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 1   MYLQLDIGIHRS-------LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYE 53
           + L+L+  + RS       LG+   +  +  + + FEQLCINY NE LQ  FN  +F  E
Sbjct: 410 LVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLE 469
Query: 54  QEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNGLLCVLDDQ 93
           QEEY +EGI W  ++F  D   C+ L+E    P GLL +LD++
Sbjct: 470 QEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEE 512

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           LG+   +  +  + + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D
Sbjct: 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLD 519
Query: 72  NTLCLQLVE--GKPNGLLCVLDDQ 93
              C++L+E    P G+L +LD++
Sbjct: 520 LQPCIELIERPTNPPGVLALLDEE 543

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           LG+   +  +  + + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D
Sbjct: 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLD 519
Query: 72  NTLCLQLVE--GKPNGLLCVLDDQ 93
              C++L+E    P G+L +LD++
Sbjct: 520 LQPCIELIERPTNPPGVLALLDEE 543

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           LG+   +  +  + + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D
Sbjct: 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLD 519
Query: 72  NTLCLQLVE--GKPNGLLCVLDDQ 93
              C++L+E    P G+L +LD++
Sbjct: 520 LQPCIELIERPTNPPGVLALLDEE 543

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-D 71
           LG+   +  +  + + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D
Sbjct: 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLD 519
Query: 72  NTLCLQLVE--GKPNGLLCVLDDQ 93
              C++L+E    P G+L +LD++
Sbjct: 520 LQPCIELIERPTNPPGVLALLDEE 543

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 452 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 511
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 512 QDCIDLIEARLVGILDILDEE 532

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 426 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 485
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 486 QDCIDLIEARLVGILDILDEE 506

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 425 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 484
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 485 QDCIDLIEARLVGILDILDEE 505

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 461 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 520
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 521 QDCIDLIEARLVGILDILDEE 541

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 449 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 508
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 509 QDCIDLIEARLVGILDILDEE 529

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 461 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 520
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 521 QDCIDLIEARLVGILDILDEE 541

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 425 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 484
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 485 QDCIDLIEARLVGILDILDEE 505

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 448 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 507
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 508 QDCIDLIEARLVGILDILDEE 528

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 451 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 510
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 511 QDCIDLIEARLVGILDILDEE 531

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 451 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 510
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 511 QDCIDLIEARLVGILDILDEE 531

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 451 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 510
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 511 QDCIDLIEARLVGILDILDEE 531

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +GV   +  ++ + + FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN
Sbjct: 452 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDN 511
Query: 73  TLCLQLVEGKPNGLLCVLDDQ 93
             C+ L+E +  G+L +LD++
Sbjct: 512 QDCIDLIEARLVGILDILDEE 532

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +G+      +  + + FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N
Sbjct: 382 IGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNN 441
Query: 73  TLCLQLVEGKPNGLLCVLDD 92
               +L+E KP GL+ +LD+
Sbjct: 442 KPICELIEKKPIGLISLLDE 461

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 13  LGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
           +G+      +  + + FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N
Sbjct: 382 IGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNN 441
Query: 73  TLCLQLVEGKPNGLLCVLDD 92
               +L+E KP GL+ +LD+
Sbjct: 442 KPICELIEKKPIGLISLLDE 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	100.0
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	100.0
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	100.0
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	100.0
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	100.0
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	100.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	100.0
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	100.0
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	100.0
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	100.0

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=100.00  E-value=1.8e-36  Score=283.49  Aligned_cols=113  Identities=29%  Similarity=0.511  Sum_probs=105.6

Q ss_pred             Cccccccccc---------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCC
Q psy7599           1 MYLQLDIGIH---------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD   71 (161)
Q Consensus         1 ~~~~~~i~i~---------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~d   71 (161)
                      ||.|++..|+         .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+|.|
T Consensus       427 LF~wlV~~IN~~l~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~D  506 (784)
T 2v26_A          427 LFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVD  506 (784)
T ss_dssp             HHHHHHHHHHTTSCCSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHHHHHHhcCcccccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccC
Confidence            4666655444         5799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhCCC
Q psy7599          72 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        72 N~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      |++|++||+++|+|||+|||++|++|++||.+|+.++.....
T Consensus       507 N~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~  548 (784)
T 2v26_A          507 NQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHK  548 (784)
T ss_dssp             CHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999987654

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=100.00  E-value=1.9e-36  Score=280.35  Aligned_cols=112  Identities=30%  Similarity=0.467  Sum_probs=104.6

Q ss_pred             Cccccccccc----------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccC
Q psy7599           1 MYLQLDIGIH----------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS   70 (161)
Q Consensus         1 ~~~~~~i~i~----------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~   70 (161)
                      ||.|++..|+          .+||||||||||+|.+|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+|.
T Consensus       360 LF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~  439 (697)
T 1lkx_A          360 LFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYF  439 (697)
T ss_dssp             HHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCS
T ss_pred             HHHHHHHHHHhhcCCCCCCceeEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Confidence            4666654443          689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhCC
Q psy7599          71 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        71 dN~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++|++||++||.|||+|||++|++|++||.+|+.|+....
T Consensus       440 dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~~  481 (697)
T 1lkx_A          440 NNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQF  481 (697)
T ss_dssp             CCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHS
T ss_pred             CCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998743

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=100.00  E-value=9.8e-36  Score=278.79  Aligned_cols=111  Identities=37%  Similarity=0.587  Sum_probs=103.7

Q ss_pred             Cccccccccc----------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccC
Q psy7599           1 MYLQLDIGIH----------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS   70 (161)
Q Consensus         1 ~~~~~~i~i~----------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~   70 (161)
                      ||.|++..|+          .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+|.
T Consensus       411 LF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~  490 (795)
T 1w7j_A          411 LFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFY  490 (795)
T ss_dssp             HHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCC
T ss_pred             HHHHHHHHHHHhhcCCccccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCcc
Confidence            4667665554          589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhCC
Q psy7599          71 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        71 dN~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++||+||++| .|||+|||++|++|++||.+|+.|+..+.
T Consensus       491 DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~~~~  531 (795)
T 1w7j_A          491 DNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTH  531 (795)
T ss_dssp             CCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHHHHh
Confidence            999999999987 99999999999999999999999998653

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=100.00  E-value=1.5e-35  Score=277.09  Aligned_cols=110  Identities=35%  Similarity=0.664  Sum_probs=101.1

Q ss_pred             Cccccccccc----------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-
Q psy7599           1 MYLQLDIGIH----------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-   69 (161)
Q Consensus         1 ~~~~~~i~i~----------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-   69 (161)
                      ||.|++..|+          .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|..|+| 
T Consensus       435 LF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~  514 (783)
T 4db1_A          435 MFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFG  514 (783)
T ss_dssp             HHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGG
T ss_pred             HHHHHHHHHHHhcCCCCCCCceEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccccccc
Confidence            4666665554          58999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCcHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhC
Q psy7599          70 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIK  111 (161)
Q Consensus        70 ~dN~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~  111 (161)
                      .||++|++||++ |+|||+||||+|++|++||.+|+.||..+
T Consensus       515 ~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~~~  555 (783)
T 4db1_A          515 MDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLFDN  555 (783)
T ss_dssp             GGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHHHH
Confidence            599999999995 89999999999999999999999999754

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=100.00  E-value=1.4e-35  Score=284.07  Aligned_cols=113  Identities=29%  Similarity=0.511  Sum_probs=106.1

Q ss_pred             Cccccccccc---------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCC
Q psy7599           1 MYLQLDIGIH---------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD   71 (161)
Q Consensus         1 ~~~~~~i~i~---------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~d   71 (161)
                      ||.|++..|+         .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|..|+|.|
T Consensus       431 LF~wiV~~IN~~l~~~~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~D  510 (1052)
T 4anj_A          431 LFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVD  510 (1052)
T ss_dssp             HHHHHHHHHHTTSCCSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHHhhhcccccccccceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCC
Confidence            4566655554         5799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhCCC
Q psy7599          72 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        72 N~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      |++||+||+++|.|||+|||++|++|++||.+|+.++..+..
T Consensus       511 N~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~  552 (1052)
T 4anj_A          511 NQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHK  552 (1052)
T ss_dssp             CHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999988764

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=100.00  E-value=2.1e-35  Score=275.64  Aligned_cols=110  Identities=38%  Similarity=0.659  Sum_probs=102.1

Q ss_pred             Cccccccccc---------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-C
Q psy7599           1 MYLQLDIGIH---------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-S   70 (161)
Q Consensus         1 ~~~~~~i~i~---------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~   70 (161)
                      ||.|++..|+         .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+| .
T Consensus       429 LF~wlV~~IN~~l~~~~~~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~  508 (770)
T 1w9i_A          429 LFLWLVKKINNVLCQERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGL  508 (770)
T ss_dssp             HHHHHHHHHHHHHCCSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGG
T ss_pred             HHHHHHHHHHHHhcCCCCCCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeecccc
Confidence            4666655443         58999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CcHHHHHHhhcC-CCccccccccccccCCCCChhHHHHHHh
Q psy7599          71 DNTLCLQLVEGK-PNGLLCVLDDQANWSRGNPMVSCVFWMI  110 (161)
Q Consensus        71 dN~~~ldLI~~k-p~GLLsLLDEEc~~pk~tD~tfl~~l~~  110 (161)
                      ||++|++||+++ |+|||+|||++|++|++||.+|+.+|+.
T Consensus       509 dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~  549 (770)
T 1w9i_A          509 DSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHS  549 (770)
T ss_dssp             GGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHH
T ss_pred             CcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHH
Confidence            999999999984 9999999999999999999999999764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=100.00  E-value=4.2e-35  Score=281.56  Aligned_cols=111  Identities=37%  Similarity=0.587  Sum_probs=103.7

Q ss_pred             Cccccccccc----------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccC
Q psy7599           1 MYLQLDIGIH----------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS   70 (161)
Q Consensus         1 ~~~~~~i~i~----------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~   70 (161)
                      ||.|++..|+          .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+|.
T Consensus       411 LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~  490 (1080)
T 2dfs_A          411 LFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFY  490 (1080)
T ss_dssp             HHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCC
T ss_pred             HHHHHHHHHHHhhccccccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccc
Confidence            4667665554          589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhCC
Q psy7599          71 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        71 dN~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      ||++||+||++| .|||+|||++|++|++||.+|+.++....
T Consensus       491 dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~~  531 (1080)
T 2dfs_A          491 DNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTH  531 (1080)
T ss_dssp             CCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHHHHh
Confidence            999999999986 99999999999999999999999998653

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=100.00  E-value=5e-35  Score=275.21  Aligned_cols=99  Identities=38%  Similarity=0.712  Sum_probs=95.7

Q ss_pred             ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcCCCccccc
Q psy7599          11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~kp~GLLsL   89 (161)
                      .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+| .||++||+||++ |.|||+|
T Consensus       454 ~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlsl  532 (837)
T 1kk8_A          454 YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSI  532 (837)
T ss_dssp             EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHH
T ss_pred             ceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999 599999999996 8999999


Q ss_pred             cccccccCCCCChhHHHHHHh
Q psy7599          90 LDDQANWSRGNPMVSCVFWMI  110 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~  110 (161)
                      |||+|++|++||.+|+.||+.
T Consensus       533 LDEec~~p~~tD~tf~~kl~~  553 (837)
T 1kk8_A          533 LEEECMFPKADDKSFQDKLYQ  553 (837)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHH
T ss_pred             HHHHhcCCCCChHHHHHHHHH
Confidence            999999999999999999753

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=100.00  E-value=1.1e-34  Score=276.85  Aligned_cols=103  Identities=36%  Similarity=0.641  Sum_probs=98.3

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhc--CCCcc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGL   86 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~--kp~GL   86 (161)
                      ..+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+| .||++||+||++  +|.||
T Consensus       426 ~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gi  505 (995)
T 2ycu_A          426 ASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGL  505 (995)
T ss_dssp             SEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCH
T ss_pred             cceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCch
Confidence            468999999999999999999999999999999999999999999999999999999999 699999999998  49999


Q ss_pred             ccccccccccCCCCChhHHHHHHhCC
Q psy7599          87 LCVLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        87 LsLLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      |+|||++|++|++||.+|+.||+.+.
T Consensus       506 l~lLdee~~~p~~tD~~f~~kl~~~~  531 (995)
T 2ycu_A          506 LALLDEECWFPKATDKSFVEKVAQEQ  531 (995)
T ss_dssp             HHHHHHSSSSTTCCHHHHHHHHHHHH
T ss_pred             hhhhHHHhcCCCCchHHHHHHHHHhc
Confidence            99999999999999999999987643

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=100.00  E-value=9e-35  Score=280.53  Aligned_cols=103  Identities=36%  Similarity=0.658  Sum_probs=97.4

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcC--CCcc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGL   86 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~k--p~GL   86 (161)
                      ..+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+| .||++||+||++|  |+||
T Consensus       457 ~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gi  536 (1184)
T 1i84_S          457 ASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGV  536 (1184)
T ss_dssp             CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCH
T ss_pred             cceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCc
Confidence            368999999999999999999999999999999999999999999999999999999999 5999999999963  3499


Q ss_pred             ccccccccccCCCCChhHHHHHHhCC
Q psy7599          87 LCVLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        87 LsLLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      |+|||++|++|++||.+|+.++....
T Consensus       537 l~lLdee~~~p~~td~~~~~kl~~~~  562 (1184)
T 1i84_S          537 LALLDEECWFPKATDTSFVEKLIQEQ  562 (1184)
T ss_dssp             HHHHHHTTSCTTCCHHHHHHHHHHHT
T ss_pred             hhhhhhhhCCCCCChHHHHHHHHHHh
Confidence            99999999999999999999998654

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=100.00  E-value=2.6e-34  Score=274.54  Aligned_cols=111  Identities=39%  Similarity=0.660  Sum_probs=102.7

Q ss_pred             Cccccccccc---------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-C
Q psy7599           1 MYLQLDIGIH---------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-S   70 (161)
Q Consensus         1 ~~~~~~i~i~---------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~   70 (161)
                      ||.|++..|+         .+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|.+|+| .
T Consensus       429 LF~wlV~~IN~~l~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~  508 (1010)
T 1g8x_A          429 LFLWLVKKINNVLCSERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGL  508 (1010)
T ss_dssp             HHHHHHHHHHHHHCCSSCSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHhcCCCcCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCcccccccc
Confidence            4666665543         58999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CcHHHHHHhhc-CCCccccccccccccCCCCChhHHHHHHhC
Q psy7599          71 DNTLCLQLVEG-KPNGLLCVLDDQANWSRGNPMVSCVFWMIK  111 (161)
Q Consensus        71 dN~~~ldLI~~-kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~  111 (161)
                      ||++||+||++ +|.|||+|||++|++|++||.+|+.|+...
T Consensus       509 dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~  550 (1010)
T 1g8x_A          509 DSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSH  550 (1010)
T ss_dssp             CSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred             ChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHH
Confidence            99999999998 499999999999999999999999997754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	5e-18
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	1e-16
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	7e-16
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	2e-15
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	2e-14
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	2e-12

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 77.8 bits (191), Expect = 5e-18
 Identities = 32/100 (32%), Positives = 53/100 (53%)

Query: 1   MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 60
             +         +G+      +  + + FEQL IN+ NE LQ  F +   + EQEEY +E
Sbjct: 362 TIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVRE 421

Query: 61  GIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           GI W++IE+ +N    +L+E KP GL+ +LD+    ++  
Sbjct: 422 GIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 461

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 34/92 (36%), Positives = 49/92 (53%)

Query: 2   YLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 61
            L         +GV   +  +    + FEQLCIN+ NE LQ +FN H+F  EQEEY KEG
Sbjct: 399 QLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEG 458

Query: 62  IRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQ 93
           I W  I+F  +      +  KP G+  +L+++
Sbjct: 459 IEWEFIDFGMDLAACIELIEKPMGIFSILEEE 490

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 36/100 (36%), Positives = 54/100 (54%)

Query: 1   MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 60
             L      +  +GV   +  +    + FEQLCINY NE LQ +FN H+F  EQEEY KE
Sbjct: 396 KTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKE 455

Query: 61  GIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
           GI W  I+F  +      +  KP G+L +L+++  + + +
Sbjct: 456 GIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKAD 495

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 10  HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
              LG+   +  +  + + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F
Sbjct: 379 ASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDF 438

Query: 70  S-DNTLCLQLVEG--KPNGLLCVLDDQANWSRGN 100
             D   C++L+E    P G+L +LD++  + +  
Sbjct: 439 GLDLQPCIELIERPTNPPGVLALLDEECWFPKAT 472

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 10  HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
           H  +GV      +  + + FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F
Sbjct: 368 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF 427

Query: 70  SDNTLCLQLVEGKPNGLLCVLDDQ 93
            DN  C+ L+E K  G+L +LD++
Sbjct: 428 YDNQPCINLIEAK-MGVLDLLDEE 450

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 28  CFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 85
            FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477

Query: 86  LLCVLDDQANWSRGN 100
           +L +LD+Q+ +    
Sbjct: 478 ILALLDEQSVFPNAT 492

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	99.97
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	99.97
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	99.97
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	99.96
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	99.96
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	99.96

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.97  E-value=2.6e-32  Score=250.86  Aligned_cols=102  Identities=39%  Similarity=0.677  Sum_probs=91.0

Q ss_pred             ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccC-CcHHHHHHhhc-CCCcccc
Q psy7599          11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG-KPNGLLC   88 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~-dN~~~ldLI~~-kp~GLLs   88 (161)
                      .+|||||+||||+|..|||+||||||||||||++|++++|..++++|.+|||.|..++|. ||++|++||.+ +|.|||+
T Consensus       401 ~~IgiLDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~eq~eY~~EgI~~~~i~~~~dn~~~~~Li~~k~p~Gll~  480 (712)
T d1d0xa2         401 YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILA  480 (712)
T ss_dssp             EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------CHHHHHHHHHCTTTTCHHH
T ss_pred             ceeeeeecccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCCCcHHHHHHHhccCCCcHHH
Confidence            579999999999999999999999999999999999999999999999999999999994 99999999985 5899999


Q ss_pred             ccccccccCCCCChhHHHHHHhCC
Q psy7599          89 VLDDQANWSRGNPMVSCVFWMIKP  112 (161)
Q Consensus        89 LLDEEc~~pk~tD~tfl~~l~~~~  112 (161)
                      +||++|++|++||.+|+.++....
T Consensus       481 lLdee~~~~~~td~~~l~kl~~~~  504 (712)
T d1d0xa2         481 LLDEQSVFPNATDNTLITKLHSHF  504 (712)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             HhHHHhcCCCCChHHHHHHHHHHh
Confidence            999999999999999999997654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=99.97  E-value=3.5e-32  Score=248.88  Aligned_cols=104  Identities=31%  Similarity=0.484  Sum_probs=100.2

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+|||||+||||+|..|+|+|||||||||+||++|++++|..++.+|..|||.|..++|.||++|++||.++|.|||++
T Consensus       371 ~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~if~~e~~~Y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~l  450 (684)
T d1lkxa_         371 GPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISL  450 (684)
T ss_dssp             CCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHH
T ss_pred             cceEEEeeccCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCcCCchHHHHHHHhccchHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChhHHHHHHhCCC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      ||++|++|++||.+|+.++.....
T Consensus       451 Ldee~~~~~~tD~~~l~kl~~~~~  474 (684)
T d1lkxa_         451 LDEACLIAKSTDQTFLDSICKQFE  474 (684)
T ss_dssp             HHHHHHSTTCCHHHHHHHHHHHSS
T ss_pred             hHHHhcCCCCchHHHHHHHHHHhc
Confidence            999999999999999999976553

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.97  E-value=6.4e-32  Score=247.87  Aligned_cols=103  Identities=36%  Similarity=0.661  Sum_probs=94.3

Q ss_pred             ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhc--CCCccc
Q psy7599          11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLL   87 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~--kp~GLL   87 (161)
                      .+|||||+||||+|..|+|+||||||||||||++|++++|..++++|.+|||.|..++| .||++|++||.+  +|.|||
T Consensus       380 ~~IgiLDifGFE~f~~NsfEQLcINy~NE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~~~lie~~~~p~Gil  459 (710)
T d1br2a2         380 SFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVL  459 (710)
T ss_dssp             EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCHHHHHHHHCCSSSCCHH
T ss_pred             ceeeEEeecCccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCcchhhHHHhccCCCcchh
Confidence            57999999999999999999999999999999999999999999999999999999999 599999999997  688999


Q ss_pred             cccccccccCCCCChhHHHHHHhCCC
Q psy7599          88 CVLDDQANWSRGNPMVSCVFWMIKPK  113 (161)
Q Consensus        88 sLLDEEc~~pk~tD~tfl~~l~~~~~  113 (161)
                      ++||++|++|++||.+|+.++.....
T Consensus       460 ~lLdee~~~p~~td~~~l~kl~~~~~  485 (710)
T d1br2a2         460 ALLDEECWFPKATDTSFVEKLIQEQG  485 (710)
T ss_dssp             HHHHHHC----CCHHHHHHHHHHHTT
T ss_pred             hhhhhhhcCCCCchHHHHHHHHHHhC
Confidence            99999999999999999999987554

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=99.96  E-value=1.3e-31  Score=246.31  Aligned_cols=101  Identities=41%  Similarity=0.652  Sum_probs=96.9

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+|||||+||||+|..|+|+|||||||||+||++|++++|..++++|.+|||.|..|+|.||++|++||.+ |.|||++
T Consensus       368 ~~~IgiLDifGFE~f~~NsfEQLcINy~NEkLq~~f~~~~F~~e~~~y~~EgI~~~~i~~~dN~~~l~Li~~-~~gil~l  446 (730)
T d1w7ja2         368 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEA-KMGVLDL  446 (730)
T ss_dssp             SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHS-TTSHHHH
T ss_pred             ccccceeeccCCcccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCCChhHHhhhhc-cccHHHH
Confidence            368999999999999999999999999999999999999999999999999999999999999999999986 6999999


Q ss_pred             cccccccCCCCChhHHHHHHhC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIK  111 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~  111 (161)
                      ||++|++|++||.+|+.++..+
T Consensus       447 Ldee~~~~~~td~~~l~kl~~~  468 (730)
T d1w7ja2         447 LDEECKMPKGSDDTWAQKLYNT  468 (730)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHH
T ss_pred             hHHhccCCCCchHHHHHHHHHH
Confidence            9999999999999999999654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.96  E-value=1.9e-31  Score=247.45  Aligned_cols=102  Identities=32%  Similarity=0.563  Sum_probs=96.3

Q ss_pred             cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599          10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV   89 (161)
Q Consensus        10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL   89 (161)
                      ..+||||||||||+|..|+|+|||||||||+||++|++++|..++.+|.+|||.|..++|.+|..++.+|..+|.|||++
T Consensus       407 ~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQq~f~~~~F~~Eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~kp~Gil~l  486 (794)
T d2mysa2         407 QYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSI  486 (794)
T ss_dssp             CEEEEEEEEECCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSTHHHHHHHHHHHSTTSHHHH
T ss_pred             ceEEEEeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCHHHHHHHHhCcccHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999988877777777789999999


Q ss_pred             cccccccCCCCChhHHHHHHhC
Q psy7599          90 LDDQANWSRGNPMVSCVFWMIK  111 (161)
Q Consensus        90 LDEEc~~pk~tD~tfl~~l~~~  111 (161)
                      ||++|++|++||.+|+.++..+
T Consensus       487 Ldee~~~~~~td~~f~~kl~~~  508 (794)
T d2mysa2         487 LEEECMFPKATDTSFKNKLYDE  508 (794)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHH
T ss_pred             HHHhccCccccHHHHHHHHHHH
Confidence            9999999999999999999653

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.96  E-value=4.7e-31  Score=244.58  Aligned_cols=101  Identities=35%  Similarity=0.575  Sum_probs=96.2

Q ss_pred             ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccccc
Q psy7599          11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL   90 (161)
Q Consensus        11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsLL   90 (161)
                      .+||||||||||+|.+|||+|||||||||+||++|++++|..++++|..|||+|..++|++|.+++++|..+|.|||++|
T Consensus       406 ~~IgILDIfGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~~~~Gll~lL  485 (789)
T d1kk8a2         406 YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSIL  485 (789)
T ss_dssp             EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHHHH
T ss_pred             eEEEEeecccceecCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCcCCCHHHHHHHHcCCccHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999988888887788899999999


Q ss_pred             ccccccCCCCChhHHHHHHhC
Q psy7599          91 DDQANWSRGNPMVSCVFWMIK  111 (161)
Q Consensus        91 DEEc~~pk~tD~tfl~~l~~~  111 (161)
                      |++|++|++||.+|+.++...
T Consensus       486 dee~~~~~~td~~~l~kl~~~  506 (789)
T d1kk8a2         486 EEECMFPKADDKSFQDKLYQN  506 (789)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHH
T ss_pred             HhhhcCCCCCHHHHHHHHHHH
Confidence            999999999999999999753