Psyllid ID: psy7622

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MCIRNLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKCAS
ccccEEEEEEccEEEEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccHHHHHHHHHHHHHHcccccccccccccccccccEEccEEEEEEEEcEEcccccccccc
ccEEEEEEEccccEEEEEcEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEcccEEEEEEccccccEEEEEEccccEEEEEEccccEEEEEcccHHHHHHHHHHHHHHcEcccccHHEEccccccEEEEEccEEEEEEEEEEcccccccccc
mcirnlnpgggggclylnktyrweetfdvdcdngtkKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYahfpincvtsenNTLLEIRNFLGEKYIRrvkmapgvkvsnskqkdeliiegndienvsRSAALIQQSTtvknkdihlnpggggggclylnktyrweetfdvdcdkkckcas
mcirnlnpgggggCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRvkmapgvkvsnskqkdeliiegndienvsRSAALIQQSttvknkdihlnpggggGGCLYLNKTYRWEEtfdvdcdkkckcas
MCIRNLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPggggggCLYLNKTYRWEETFDVDCDKKCKCAS
*************CLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGV***************************************************************************
**IRNLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC**
MCIRNLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKCAS
MCIRNLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCIRNLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKCAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
P50882190 60S ribosomal protein L9 yes N/A 0.675 0.636 0.795 5e-49
Q963B7190 60S ribosomal protein L9 N/A N/A 0.614 0.578 0.819 9e-48
P32969192 60S ribosomal protein L9 yes N/A 0.620 0.578 0.732 1e-41
Q3SYR7192 60S ribosomal protein L9 yes N/A 0.620 0.578 0.732 1e-41
Q5IFJ7192 60S ribosomal protein L9 N/A N/A 0.620 0.578 0.723 2e-41
Q5R9Q7192 60S ribosomal protein L9 yes N/A 0.620 0.578 0.723 1e-40
P51410192 60S ribosomal protein L9 yes N/A 0.620 0.578 0.723 1e-40
P17077192 60S ribosomal protein L9 yes N/A 0.620 0.578 0.723 1e-40
Q90YW0192 60S ribosomal protein L9 N/A N/A 0.675 0.630 0.655 2e-40
Q95Y90189 60S ribosomal protein L9 yes N/A 0.614 0.582 0.612 1e-34
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2 Back     alignment and function desciption
 Score =  193 bits (491), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/122 (79%), Positives = 106/122 (86%), Gaps = 1/122 (0%)

Query: 24  EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTL 83
           + T  V+   GTKKE+AAVRTVCSHI NM+KGVT GF YKMRA YAHFPINCVTSENNT+
Sbjct: 50  KRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTV 109

Query: 84  LEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
           +EIRNFLGEKYIRRV+MAPGV V NS  QKDELI+EGNDIE+VS SAALIQQSTTVKNKD
Sbjct: 110 IEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKD 169

Query: 143 IH 144
           I 
Sbjct: 170 IR 171

Drosophila melanogaster (taxid: 7227)
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1 Back     alignment and function description
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1 Back     alignment and function description
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2 Back     alignment and function description
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1 Back     alignment and function description
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1 Back     alignment and function description
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
110671494189 putative ribosomal protein L9 [Diaphorin 0.614 0.582 1.0 1e-56
240848895188 60S ribosomal protein L9-like [Acyrthosi 0.620 0.590 0.855 3e-51
383855254190 PREDICTED: 60S ribosomal protein L9-like 0.620 0.584 0.866 2e-49
339283878193 60S ribosomal protein L9 [Laodelphax str 0.620 0.575 0.848 2e-49
307187142190 60S ribosomal protein L9 [Camponotus flo 0.620 0.584 0.866 2e-49
332021672219 60S ribosomal protein L9 [Acromyrmex ech 0.620 0.506 0.866 3e-49
70909653189 ribosomal protein L9e [Cicindela litorea 0.620 0.587 0.857 3e-49
307208757190 60S ribosomal protein L9 [Harpegnathos s 0.620 0.584 0.866 4e-49
66565444190 PREDICTED: 60S ribosomal protein L9 [Api 0.620 0.584 0.857 7e-49
340715649190 PREDICTED: 60S ribosomal protein L9-like 0.620 0.584 0.857 7e-49
>gi|110671494|gb|ABG81998.1| putative ribosomal protein L9 [Diaphorina citri] Back     alignment and taxonomy information
 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 34  GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
           GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK
Sbjct: 60  GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 119

Query: 94  YIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
           YIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI
Sbjct: 120 YIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 169

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|240848895|ref|NP_001155561.1| 60S ribosomal protein L9-like [Acyrthosiphon pisum] gi|239788929|dbj|BAH71117.1| ACYPI004082 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383855254|ref|XP_003703131.1| PREDICTED: 60S ribosomal protein L9-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|339283878|gb|AEJ38208.1| 60S ribosomal protein L9 [Laodelphax striatella] Back     alignment and taxonomy information
>gi|307187142|gb|EFN72386.1| 60S ribosomal protein L9 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332021672|gb|EGI62031.1| 60S ribosomal protein L9 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|70909653|emb|CAJ17250.1| ribosomal protein L9e [Cicindela litorea] Back     alignment and taxonomy information
>gi|307208757|gb|EFN86034.1| 60S ribosomal protein L9 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|66565444|ref|XP_623506.1| PREDICTED: 60S ribosomal protein L9 [Apis mellifera] Back     alignment and taxonomy information
>gi|340715649|ref|XP_003396322.1| PREDICTED: 60S ribosomal protein L9-like [Bombus terrestris] gi|350417930|ref|XP_003491650.1| PREDICTED: 60S ribosomal protein L9-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
FB|FBgn0015756190 RpL9 "Ribosomal protein L9" [D 0.670 0.631 0.801 1.3e-45
UNIPROTKB|Q3SYR7192 RPL9 "60S ribosomal protein L9 0.614 0.572 0.738 3.7e-39
UNIPROTKB|E2R149192 RPL9 "Uncharacterized protein" 0.614 0.572 0.738 3.7e-39
UNIPROTKB|H0Y9V9189 RPL9 "60S ribosomal protein L9 0.614 0.582 0.738 3.7e-39
UNIPROTKB|P32969192 RPL9 "60S ribosomal protein L9 0.614 0.572 0.738 3.7e-39
UNIPROTKB|I3LP78192 RPL9 "Uncharacterized protein" 0.614 0.572 0.738 3.7e-39
UNIPROTKB|F1NS91181 RPL9 "Uncharacterized protein" 0.614 0.607 0.720 1.3e-38
UNIPROTKB|G3N2H8191 G3N2H8 "Uncharacterized protei 0.625 0.586 0.721 2.6e-38
MGI|MGI:1298373192 Rpl9 "ribosomal protein L9" [M 0.614 0.572 0.729 2.6e-38
RGD|62049192 Rpl9 "ribosomal protein L9" [R 0.614 0.572 0.729 2.6e-38
FB|FBgn0015756 RpL9 "Ribosomal protein L9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 97/121 (80%), Positives = 106/121 (87%)

Query:    24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTL 83
             + T  V+   GTKKE+AAVRTVCSHI NM+KGVT GF YKMRA YAHFPINCVTSENNT+
Sbjct:    50 KRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTV 109

Query:    84 LEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
             +EIRNFLGEKYIRRV+MAPGV V NS  QKDELI+EGNDIE+VS SAALIQQSTTVKNKD
Sbjct:   110 IEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKD 169

Query:   143 I 143
             I
Sbjct:   170 I 170
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS
GO:0006412 "translation" evidence=ISS
GO:0005840 "ribosome" evidence=IDA;NAS
GO:0019843 "rRNA binding" evidence=IEA
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
UNIPROTKB|Q3SYR7 RPL9 "60S ribosomal protein L9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R149 RPL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y9V9 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P32969 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP78 RPL9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NS91 RPL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2H8 G3N2H8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1298373 Rpl9 "ribosomal protein L9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|62049 Rpl9 "ribosomal protein L9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2NFX3RL6_METSTNo assigned EC number0.39490.64800.6304yesN/A
A3DNC3RL6_STAMFNo assigned EC number0.43220.62560.6054yesN/A
P14030RL6_METVANo assigned EC number0.43800.65360.6428yesN/A
A9A9P8RL6_METM6No assigned EC number0.44620.65360.6428yesN/A
P14135RL6_HALMANo assigned EC number0.35530.65360.6573yesN/A
P05738RL9A_YEASTNo assigned EC number0.48360.66480.6230yesN/A
Q12ZT5RL6_METBUNo assigned EC number0.41220.61450.6214yesN/A
Q95Y90RL9_CAEELNo assigned EC number0.61260.61450.5820yesN/A
P51410RL9_MOUSENo assigned EC number0.72320.62010.5781yesN/A
O74905RL9B_SCHPONo assigned EC number0.58400.62560.5925yesN/A
Q9SZX9RL92_ARATHNo assigned EC number0.57750.64240.5927yesN/A
A0B9V4RL6_METTPNo assigned EC number0.39470.61450.625yesN/A
Q3IMX2RL6_NATPDNo assigned EC number0.33330.68710.6949yesN/A
A6VH01RL6_METM7No assigned EC number0.43800.65360.6428yesN/A
A4FWA5RL6_METM5No assigned EC number0.43800.65360.6428yesN/A
B8D5V4RL6_DESK1No assigned EC number0.42370.62010.6032yesN/A
Q6LXD7RL6_METMPNo assigned EC number0.42140.65360.6428yesN/A
P50882RL9_DROMENo assigned EC number0.79500.67590.6368yesN/A
P49210RL9_ORYSJNo assigned EC number0.58470.65360.6157yesN/A
Q54XI5RL9_DICDINo assigned EC number0.46150.64800.6170yesN/A
Q5R9Q7RL9_PONABNo assigned EC number0.72320.62010.5781yesN/A
A6UQ60RL6_METVSNo assigned EC number0.43800.65360.6428yesN/A
Q3SYR7RL9_BOVINNo assigned EC number0.73210.62010.5781yesN/A
P17077RL9_RATNo assigned EC number0.72320.62010.5781yesN/A
P32969RL9_HUMANNo assigned EC number0.73210.62010.5781yesN/A
P51401RL9B_YEASTNo assigned EC number0.48360.66480.6230yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
PTZ00027190 PTZ00027, PTZ00027, 60S ribosomal protein L6; Prov 3e-54
PRK05518180 PRK05518, rpl6p, 50S ribosomal protein L6P; Review 1e-39
PTZ00179189 PTZ00179, PTZ00179, 60S ribosomal protein L9; Prov 5e-38
TIGR03653170 TIGR03653, arch_L6P, archaeal ribosomal protein L6 6e-37
COG0097178 COG0097, RplF, Ribosomal protein L6P/L9E [Translat 7e-27
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 8e-13
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 0.001
>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional Back     alignment and domain information 
 Score =  169 bits (431), Expect = 3e-54
 Identities = 70/111 (63%), Positives = 82/111 (73%), Gaps = 1/111 (0%)

Query: 34  GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
           GT   +A +RTVCSHI NM+ GVTK F YKMR  YAHFPIN   ++N   +EIRNFLGEK
Sbjct: 61  GTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEK 120

Query: 94  YIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
            +R VKM PGV V  S+  KDE+I+ G D+E VSRSAALI QST V+NKDI
Sbjct: 121 RVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLVRNKDI 171

Length = 190
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>gnl|CDD|140206 PTZ00179, PTZ00179, 60S ribosomal protein L9; Provisional Back     alignment and domain information
>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P Back     alignment and domain information
>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
PTZ00027190 60S ribosomal protein L6; Provisional 100.0
PTZ00179189 60S ribosomal protein L9; Provisional 100.0
PRK05518180 rpl6p 50S ribosomal protein L6P; Reviewed 100.0
TIGR03653170 arch_L6P archaeal ribosomal protein L6P. Members o 100.0
COG0097178 RplF Ribosomal protein L6P/L9E [Translation, ribos 100.0
CHL00140178 rpl6 ribosomal protein L6; Validated 100.0
TIGR03654175 L6_bact ribosomal protein L6, bacterial type. 100.0
PRK05498178 rplF 50S ribosomal protein L6; Validated 100.0
KOG3254|consensus211 100.0
KOG3255|consensus179 99.87
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 99.38
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 97.67
>PTZ00027 60S ribosomal protein L6; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-55  Score=364.58  Aligned_cols=154  Identities=49%  Similarity=0.688  Sum_probs=143.7

Q ss_pred             ccccccCCcEEEEEeee--------ccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEE
Q psy7622           5 NLNPGGGGGCLYLNKTY--------RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCV   76 (179)
Q Consensus         5 ~~~~~Gp~G~l~~~~~~--------~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~   76 (179)
                      .|.++||+|+|++.+..        .++++|.|++|.++++.+|+|||+||||+|||+|||+||+|+|+++|+||||+++
T Consensus        24 ~v~VkGp~G~L~~~~~~~~~~i~i~~~~~~i~v~~~~~~~k~~a~~Gt~rslI~NmI~GVt~Gf~~~LeivGvGyra~~~  103 (190)
T PTZ00027         24 KVTVTGKYGELTRSFRHLPVDIKLSKDGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSN  103 (190)
T ss_pred             EEEEECCCceEEEEecCCCceEEEEeCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeeeeEEEE
Confidence            47899999999999842        3788999999999999999999999999999999999999999999999999976


Q ss_pred             eccCCceeEEeccCCceeeEEEeCCCCcEEEec-CCCCEEEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCCCceE
Q psy7622          77 TSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCL  155 (179)
Q Consensus        77 i~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~-~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~~~~~  155 (179)
                      ++++|+.|+|+||||||||+.++||+||+++++ ..+|+|+|+|+|||+||||||+||++|++|+||+|+||||     |
T Consensus       104 v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~AA~I~~~~~~~~~d~r~f~dg-----i  178 (190)
T PTZ00027        104 ITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLVRNKDIRKFLDG-----I  178 (190)
T ss_pred             EcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcccCCCccEeecC-----E
Confidence            666799999999999999999999999999998 2348999999999999999999999999999999999999     9


Q ss_pred             Eeccccce
Q psy7622         156 YLNKTYRW  163 (179)
Q Consensus       156 ~~~~~~~~  163 (179)
                      |+++++..
T Consensus       179 y~~~k~~~  186 (190)
T PTZ00027        179 YVSEKGTV  186 (190)
T ss_pred             EEEEeeee
Confidence            99999944

>PTZ00179 60S ribosomal protein L9; Provisional Back     alignment and domain information
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>TIGR03653 arch_L6P archaeal ribosomal protein L6P Back     alignment and domain information
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00140 rpl6 ribosomal protein L6; Validated Back     alignment and domain information
>TIGR03654 L6_bact ribosomal protein L6, bacterial type Back     alignment and domain information
>PRK05498 rplF 50S ribosomal protein L6; Validated Back     alignment and domain information
>KOG3254|consensus Back     alignment and domain information
>KOG3255|consensus Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
2zkr_e192 Structure Of A Mammalian Ribosomal 60s Subunit With 7e-43
3izr_F190 Localization Of The Large Subunit Ribosomal Protein 9e-34
1s1i_H191 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 9e-26
3jyw_H179 Structure Of The 60s Proteins For Eukaryotic Riboso 9e-26
3zf7_y189 High-resolution Cryo-electron Microscopy Structure 9e-26
4a17_E188 T.Thermophila 60s Ribosomal Subunit In Complex With 3e-25
3j21_F184 Promiscuous Behavior Of Proteins In Archaeal Riboso 4e-21
1s72_E178 Refined Crystal Structure Of The Haloarcula Marismo 9e-16
1ffk_1177 Crystal Structure Of The Large Ribosomal Subunit Fr 9e-16
3g4s_E172 Co-Crystal Structure Of Tiamulin Bound To The Large 1e-15
2cql_A100 Solution Structure Of The N-Terminal Domain Of Huma 1e-04
>pdb|2ZKR|EE Chain e, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 192 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 94/112 (83%), Gaps = 1/112 (0%)
Query: 34  GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
           G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEK
Sbjct: 62  GNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEK 121
Query: 94  YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
           YIRRV+M PGV  S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDI 
Sbjct: 122 YIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR 173
>pdb|3IZR|F Chain F, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 190 Back     alignment and structure
>pdb|1S1I|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 191 Back     alignment and structure
>pdb|3JYW|H Chain H, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 179 Back     alignment and structure
>pdb|3ZF7|YY Chain y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 189 Back     alignment and structure
>pdb|4A17|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 188 Back     alignment and structure
>pdb|3J21|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 184 Back     alignment and structure
>pdb|1S72|E Chain E, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 178 Back     alignment and structure
>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|3G4S|E Chain E, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 172 Back     alignment and structure
>pdb|2CQL|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Ribosomal Protein L9 Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 2e-54
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 2e-53
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 1e-52
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 3e-52
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 3e-51
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191 Back     alignment and structure
 Score =  169 bits (431), Expect = 2e-54
 Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 3/118 (2%)

Query: 29  VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSEN--NTLLEI 86
           V   NG +K +AA+RTV S + NM+ GVTKG+ YKMR  YAHFPIN    E      +E+
Sbjct: 55  VAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEV 114

Query: 87  RNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
           RNFLG+K IR V +  GV +  S   KDE+++ GN +E+VS++AA +QQ   V+NKDI
Sbjct: 115 RNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDI 172
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192 Back     alignment and structure
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188 Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178 Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Length = 100 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 100.0
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 100.0
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 100.0
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 100.0
3j21_F184 50S ribosomal protein L6P; archaea, archaeal, KINK 100.0
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 100.0
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 100.0
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 100.0
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 100.0
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 100.0
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 100.0
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 100.0
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 99.77
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 85.33
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Back     alignment and structure
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Back     alignment and structure
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d1vqoe293 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeo 2e-40
d2cqla187 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Ho 6e-07
d2j01h171 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus 2e-06
d1rl6a175 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus 2e-05
d2zjre278 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococc 3e-05
d2qamg181 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherich 7e-05
d1vqoe179 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon 2e-04
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 93 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  130 bits (328), Expect = 2e-40
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 60  FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG 119
           + Y M   Y+HFP+      +   + I NFLGEK  RR  +     V      +EL + G
Sbjct: 1   WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSG 56

Query: 120 NDIENVSRSAALIQQSTTVKNKDI 143
            DIE V ++AA I+Q T + +KD+
Sbjct: 57  PDIEAVGQTAADIEQLTRINDKDV 80
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71 Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75 Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78 Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d1vqoe293 Ribosomal protein L6 {Archaeon Haloarcula marismor 100.0
d1rl6a289 Ribosomal protein L6 {Bacillus stearothermophilus 99.96
d2j01h289 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.95
d2zjre190 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.95
d2qamg295 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.95
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 99.73
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 99.73
d2j01h171 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.73
d2zjre278 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.7
d2qamg181 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.7
d2cqla187 Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 99.69
d2cqla187 Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 87.67
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 86.48
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 84.75
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.4e-37  Score=228.76  Aligned_cols=92  Identities=35%  Similarity=0.589  Sum_probs=88.8

Q ss_pred             eEEEEEEEEEEeceeEEeccCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhcccc
Q psy7622          60 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVK  139 (179)
Q Consensus        60 f~~kL~ivgvgyra~v~i~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~~K  139 (179)
                      |+|+|+++|+|||++++++  |+.++|+||||+++|+.++||+|++|++  ++++|+|+|+|+|+|||+||+|+|+|++|
T Consensus         1 f~Ykmk~vyaHFPi~v~v~--g~~v~I~NFlGEK~~R~~~i~~gv~v~v--~~deiiv~G~d~E~V~qtAA~Ieq~t~vk   76 (93)
T d1vqoe2           1 WEYGMEVFYSHFPMQVNVE--GDEVVIENFLGEKAPRRTTIHGDTDVEI--DGEELTVSGPDIEAVGQTAADIEQLTRIN   76 (93)
T ss_dssp             EEEEEEEECSSSCCEEEEE--TTEEEEESGGGCSSCEEEECCTTCEEEE--ETTEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             CEEEEEEEEEeCCeEEEEc--CCEEEEEeccCCceeEEEEecCCCeeEE--cCCEEEEEcCCHHHHHHHHHHHHHhhccC
Confidence            8999999999999999874  9999999999999999999999999999  58999999999999999999999999999


Q ss_pred             CCceeecCCCCCCceEEeccc
Q psy7622         140 NKDIHLNPGGGGGGCLYLNKT  160 (179)
Q Consensus       140 gKdiR~FlDG~~~~~~~~~~~  160 (179)
                      +||+|+||||     ||+++|
T Consensus        77 ~kD~R~FlDG-----IYv~eK   92 (93)
T d1vqoe2          77 DKDVRVFQDG-----VYITRK   92 (93)
T ss_dssp             SSCTTTCCCE-----EEEEEC
T ss_pred             CCCccEeecC-----EEEEec
Confidence            9999999999     999975
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure