Psyllid ID: psy7639
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2568 | 2.2.26 [Sep-21-2011] | |||||||
| P41825 | 640 | Heat shock protein 70 A1 | N/A | N/A | 0.225 | 0.903 | 0.803 | 0.0 | |
| P41826 | 640 | Heat shock protein 70 A2 | N/A | N/A | 0.225 | 0.903 | 0.802 | 0.0 | |
| P41827 | 640 | Heat shock protein 70 B2 | N/A | N/A | 0.225 | 0.903 | 0.803 | 0.0 | |
| O97125 | 635 | Heat shock protein 68 OS= | yes | N/A | 0.225 | 0.910 | 0.781 | 0.0 | |
| Q9GSU4 | 643 | Major heat shock 70 kDa p | N/A | N/A | 0.225 | 0.898 | 0.774 | 0.0 | |
| P02825 | 642 | Major heat shock 70 kDa p | no | N/A | 0.225 | 0.900 | 0.777 | 0.0 | |
| P82910 | 642 | Major heat shock 70 kDa p | no | N/A | 0.225 | 0.900 | 0.777 | 0.0 | |
| Q9BIR7 | 641 | Major heat shock 70 kDa p | no | N/A | 0.225 | 0.901 | 0.775 | 0.0 | |
| Q9BIS2 | 641 | Major heat shock 70 kDa p | no | N/A | 0.225 | 0.901 | 0.775 | 0.0 | |
| Q8INI8 | 641 | Major heat shock 70 kDa p | no | N/A | 0.225 | 0.901 | 0.775 | 0.0 |
| >sp|P41825|HSP71_ANOAL Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/591 (80%), Positives = 534/591 (90%), Gaps = 13/591 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGER
Sbjct: 50 GDAAKNQVAMNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGER 109
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTFAPEEISSMVLTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIAGLNVMR
Sbjct: 110 KTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMR 169
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 170 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 229
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNR+V+H EEFKRK+KKD+S N RALRRLRTA ERAKRTLSSSTEA+IEIDAL DG
Sbjct: 230 EDFDNRMVAHFVEEFKRKFKKDLSKNARALRRLRTACERAKRTLSSSTEATIEIDALMDG 289
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
ID+YTKISRARFEELCSDLFRSTLQPVEKAL DAK+DKS+IHD+VLVGGSTRIPKVQSLL
Sbjct: 290 IDYYTKISRARFEELCSDLFRSTLQPVEKALSDAKMDKSSIHDIVLVGGSTRIPKVQSLL 349
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFF GKSLNLSINPDEAVAYGAAVQAAILSGD+ IQDVLLVDV PLSLGIETAGGVM
Sbjct: 350 QNFFAGKSLNLSINPDEAVAYGAAVQAAILSGDKDDKIQDVLLVDVAPLSLGIETAGGVM 409
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN+RIPCKQT+ F+TYADNQP V+IQVFEGERAMTKDNNLLG FDL+GIPPAPRG
Sbjct: 410 TKLIERNSRIPCKQTKIFSTYADNQPGVSIQVFEGERAMTKDNNLLGQFDLSGIPPAPRG 469
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV AKD SSGK +NITIKNDKGRLS+ +IDRM+++AE+Y++EDE
Sbjct: 470 VPQIEVTFDLDANGILNVAAKDKSSGKEKNITIKNDKGRLSQADIDRMVSEAEKYREEDE 529
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAG-NKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+Q+E I+ARN LEAY FN+KQ+LD G +KL+E+++ ++ CD TL+W+D NT+A+KEE
Sbjct: 530 KQREAIAARNQLEAYCFNLKQSLDGEGSSKLSEADRRTVQDRCDETLRWIDGNTMAEKEE 589
Query: 2530 YQDKLQQLQKSCMPLMSKMHGGASAGDMP------------RGGPTVEEVD 2568
Y+ ++Q+L + C P+M+K+H A+ G P R GPTVEEVD
Sbjct: 590 YEHQMQELSRVCSPIMTKLHQQAAGGPQPTSCGQQAGGFGGRTGPTVEEVD 640
|
Anopheles albimanus (taxid: 7167) |
| >sp|P41826|HSP72_ANOAL Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/591 (80%), Positives = 534/591 (90%), Gaps = 13/591 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDC KPKI+VEFKGER
Sbjct: 50 GDAAKNQVAMNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFKGER 109
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTFAPEEISSMVLTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIAGLNVMR
Sbjct: 110 KTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMR 169
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 170 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 229
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNR+V+H EEFKRK+KKD+S N RALRRLRTA ERAKRTLSSSTEA+IEIDAL DG
Sbjct: 230 EDFDNRMVAHFVEEFKRKFKKDLSKNARALRRLRTACERAKRTLSSSTEATIEIDALMDG 289
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
ID+YTKISRARFEELCSDLFRSTLQPVEKAL DAK+DKS+IHD+VLVGGSTRIPKVQSLL
Sbjct: 290 IDYYTKISRARFEELCSDLFRSTLQPVEKALSDAKMDKSSIHDIVLVGGSTRIPKVQSLL 349
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFF GKSLNLSINPDEAVAYGAAVQAAILSGD+ IQDVLLVDV PLSLGIETAGGVM
Sbjct: 350 QNFFAGKSLNLSINPDEAVAYGAAVQAAILSGDKDDKIQDVLLVDVAPLSLGIETAGGVM 409
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN+RIPCKQT+ F+TYADNQP V+IQVFEGERAMTKDNNLLG FDL+GIPPAPRG
Sbjct: 410 TKLIERNSRIPCKQTKIFSTYADNQPGVSIQVFEGERAMTKDNNLLGQFDLSGIPPAPRG 469
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV AKD SSGK +NITIKNDKGRLS+ +IDRM+++AE+Y++EDE
Sbjct: 470 VPQIEVTFDLDANGILNVAAKDKSSGKEKNITIKNDKGRLSQADIDRMVSEAEKYREEDE 529
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAG-NKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+Q+E I+ARN LEAY FN+KQ+LD G +KL+++++ ++ CD TL+W+D NT+A+KEE
Sbjct: 530 KQREAIAARNQLEAYCFNLKQSLDGEGSSKLSDADRRTVQDRCDETLRWIDGNTMAEKEE 589
Query: 2530 YQDKLQQLQKSCMPLMSKMHGGASAGDMP------------RGGPTVEEVD 2568
Y+ ++Q+L + C P+M+K+H A+ G P R GPTVEEVD
Sbjct: 590 YEHQMQELSRVCSPIMTKLHQQAAGGPQPTSCGQQAGGFGGRTGPTVEEVD 640
|
Anopheles albimanus (taxid: 7167) |
| >sp|P41827|HSP74_ANOAL Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/591 (80%), Positives = 534/591 (90%), Gaps = 13/591 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVND KPKI+VEFKGER
Sbjct: 50 GDAAKNQVAMNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDGGKPKIRVEFKGER 109
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTFAPEEISSMVLTKMKETAEAYLG SV++AVITVPAYFND+QRQATKDAGAIAGLNVMR
Sbjct: 110 KTFAPEEISSMVLTKMKETAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMR 169
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 170 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 229
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNR+V H EEFKRK+KKD+S N RALRRLRTA ERAKRTLSSSTEA+IEIDAL DG
Sbjct: 230 EDFDNRMVGHFVEEFKRKHKKDLSKNARALRRLRTACERAKRTLSSSTEATIEIDALMDG 289
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
ID+YTKISRARFEELCSDLFRSTLQPVEKAL DAK+DKS+IHD+VLVGGSTRIPKVQSLL
Sbjct: 290 IDYYTKISRARFEELCSDLFRSTLQPVEKALSDAKMDKSSIHDIVLVGGSTRIPKVQSLL 349
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFF GKSLNLSINPDEAVAYGAAVQAAILSGD+ IQDVLLVDV PLSLGIETAGGVM
Sbjct: 350 QNFFAGKSLNLSINPDEAVAYGAAVQAAILSGDKDDKIQDVLLVDVAPLSLGIETAGGVM 409
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN+RIPCKQTQ F+TYADNQP V+IQVFEGERAMTKDNNLLG FDL+GIPPAPRG
Sbjct: 410 TKLIERNSRIPCKQTQIFSTYADNQPGVSIQVFEGERAMTKDNNLLGQFDLSGIPPAPRG 469
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV AK+ S+GK +NITIKNDKGRLS+ +IDRM+++AE++++EDE
Sbjct: 470 VPQIEVTFDLDANGILNVAAKEKSTGKEKNITIKNDKGRLSQADIDRMVSEAEKFREEDE 529
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAG-NKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+Q+ERISARN LEAY FN+KQ+LD G +KL+++++ ++ C+ TL+W+D NT+ADKEE
Sbjct: 530 KQRERISARNQLEAYCFNLKQSLDGEGASKLSDADRKTVQDRCEETLRWIDGNTMADKEE 589
Query: 2530 YQDKLQQLQKSCMPLMSKMHGGASAGDMP------------RGGPTVEEVD 2568
++ K+Q+L K+C P+M+K+H A+ G P R GPTVEEVD
Sbjct: 590 FEHKMQELTKACSPIMTKLHQQAAGGPSPSSCAQQAGGFGGRTGPTVEEVD 640
|
Anopheles albimanus (taxid: 7167) |
| >sp|O97125|HSP68_DROME Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/587 (78%), Positives = 528/587 (89%), Gaps = 9/587 (1%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNPKN+VFDAKRLIGR+FDD KIQ+D+KHWPF V+ND KPKI VEFKG
Sbjct: 49 GDAAKNQVAMNPKNSVFDAKRLIGRRFDDSKIQEDIKHWPFKVINDNGKPKISVEFKGAN 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K F+PEEISSMVLTKMKETAEAYLG +V+DAVITVPAYFND+QRQATKDAGAIAG+NV+R
Sbjct: 109 KCFSPEEISSMVLTKMKETAEAYLGTTVKDAVITVPAYFNDSQRQATKDAGAIAGINVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+H AEEFKRKYKKD+ NPRALRRLRTAAERAKRTLSSSTEAS+EIDALY+G
Sbjct: 229 EDFDNRLVNHFAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEASLEIDALYEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFY+K+SRARFEELC DLFR+TL+PVEKAL+DAK+DKS IHD+VLVGGSTRIPKVQ+LL
Sbjct: 289 HDFYSKVSRARFEELCGDLFRNTLEPVEKALKDAKMDKSQIHDIVLVGGSTRIPKVQNLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFF GK+LNLSINPDEAVAYGAA+QAAILSGD+SS I+DVLLVDV PLSLGIETAGGVM
Sbjct: 349 QNFFGGKTLNLSINPDEAVAYGAAIQAAILSGDKSSEIKDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN+RIPCKQ++TFTTYADNQPAVTIQVFEGERA+TKDNN+LGTFDLTG+PPAPRG
Sbjct: 409 TKLIERNSRIPCKQSKTFTTYADNQPAVTIQVFEGERALTKDNNVLGTFDLTGVPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VPKIDVTFDLDANGILNVTAK+ +G ++NITIKNDKGRLS+ +IDRM+++AE+Y +EDE
Sbjct: 469 VPKIDVTFDLDANGILNVTAKEQGTGNAKNITIKNDKGRLSQADIDRMLSEAEKYAEEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
R ++RI+ARN LE Y+F VK+A +N G++++ ++KS E C +KWLD+NT A+KEEY
Sbjct: 529 RHRQRIAARNQLETYLFGVKEAAENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEY 588
Query: 2531 QDKLQQLQKSCMPLMSKMHGGASAGDMPRG---------GPTVEEVD 2568
+ KL++L++ C P+M+KMH G G GPTVEEVD
Sbjct: 589 EYKLKELEQFCSPIMTKMHKGGGDGQQAPNFGQQAGGYKGPTVEEVD 635
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9GSU4|HSP72_DROSI Major heat shock 70 kDa protein Ba OS=Drosophila simulans GN=Hsp70Ba PE=2 SV=2 | Back alignment and function description |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/595 (77%), Positives = 527/595 (88%), Gaps = 17/595 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+DC KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDCGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVL KMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLAKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NPRALRRLRTAAERAKRTLSSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALTDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDEAVAYGAAVQAAILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+Q++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KQRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH----------------GGASAGDMPRGGPTVEEVD 2568
+ K+++L + C P+M+KMH G + G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 643
|
Drosophila simulans (taxid: 7240) |
| >sp|P02825|HSP71_DROME Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=2 SV=3 | Back alignment and function description |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/594 (77%), Positives = 527/594 (88%), Gaps = 16/594 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLA+EFKRKYKKD+ NPRALRRLRTAAERAKRTLSSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLADEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q+FF GK+LNLSINPDEAVAYGAAVQAAILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QDFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TYADNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQA++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH---------------GGASAGDMPRGGPTVEEVD 2568
+ KL++L + C P+M+KMH G + G GPTVEEVD
Sbjct: 589 FDHKLEELTRHCSPIMTKMHQQGAGAGAGGPGANCGQQAGGFGGYSGPTVEEVD 642
|
Drosophila melanogaster (taxid: 7227) |
| >sp|P82910|HSP70_DROME Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2 | Back alignment and function description |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/594 (77%), Positives = 527/594 (88%), Gaps = 16/594 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLA+EFKRKYKKD+ NPRALRRLRTAAERAKRTLSSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLADEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q+FF GK+LNLSINPDEAVAYGAAVQAAILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QDFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TYADNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQA++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH---------------GGASAGDMPRGGPTVEEVD 2568
+ KL++L + C P+M+KMH G + G GPTVEEVD
Sbjct: 589 FDHKLEELTRHCSPIMTKMHQQGAGAGAGGPGANCGQQAGGFGGYSGPTVEEVD 642
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9BIR7|HSP75_DROME Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2 | Back alignment and function description |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/593 (77%), Positives = 526/593 (88%), Gaps = 15/593 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NPRALRRLRTAAERAKRTLSSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDEAVAYGAAVQAAILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--------------GGASAGDMPRGGPTVEEVD 2568
+ K+++L + C P+M+KMH G + G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9BIS2|HSP73_DROME Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2 | Back alignment and function description |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/593 (77%), Positives = 526/593 (88%), Gaps = 15/593 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NPRALRRLRTAAERAKRTLSSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDEAVAYGAAVQAAILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--------------GGASAGDMPRGGPTVEEVD 2568
+ K+++L + C P+M+KMH G + G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q8INI8|HSP72_DROME Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2 | Back alignment and function description |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/593 (77%), Positives = 526/593 (88%), Gaps = 15/593 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NPRALRRLRTAAERAKRTLSSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDEAVAYGAAVQAAILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--------------GGASAGDMPRGGPTVEEVD 2568
+ K+++L + C P+M+KMH G + G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2568 | ||||||
| 308097853 | 653 | hsp70 [Bemisia tabaci] | 0.209 | 0.822 | 0.866 | 0.0 | |
| 328700067 | 637 | PREDICTED: heat shock protein 70 A1-like | 0.225 | 0.907 | 0.832 | 0.0 | |
| 295393290 | 653 | heat shock protein 70 [Bemisia tabaci] | 0.209 | 0.822 | 0.852 | 0.0 | |
| 317135488 | 643 | heat shock protein 70 [Spodoptera litura | 0.225 | 0.898 | 0.816 | 0.0 | |
| 423292561 | 643 | 70 kDa heat shock protein [Lygus hesperu | 0.225 | 0.898 | 0.818 | 0.0 | |
| 423293164 | 638 | heat shock protein 70 [Frankliniella occ | 0.225 | 0.905 | 0.813 | 0.0 | |
| 269859258 | 652 | heat shock protein 70 [Bemisia tabaci] | 0.209 | 0.823 | 0.846 | 0.0 | |
| 264666928 | 649 | heat shock protein 70 [Bemisia tabaci] | 0.209 | 0.827 | 0.846 | 0.0 | |
| 198250390 | 653 | heat shock protein 70 [Bemisia tabaci] | 0.209 | 0.822 | 0.846 | 0.0 | |
| 198250398 | 649 | heat shock protein 70 [Trialeurodes vapo | 0.213 | 0.842 | 0.842 | 0.0 |
| >gi|308097853|gb|ADO14473.1| hsp70 [Bemisia tabaci] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/561 (86%), Positives = 527/561 (93%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP+NTVFDAKRLIGRKFDDPKIQ DMKHWPFTVVNDCSKPKIQVEFKGE
Sbjct: 52 GDAAKNQVAMNPQNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCSKPKIQVEFKGET 111
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K FAPEEISSMVLTKMKETAEAYLG VRDAVITVPAYFND+QRQATKDAGAIAGLNV+R
Sbjct: 112 KRFAPEEISSMVLTKMKETAEAYLGGKVRDAVITVPAYFNDSQRQATKDAGAIAGLNVLR 171
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 172 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 231
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+HLAEEFKRKY+KD+ N RALRRLRTAAERAKRTLSSSTEASIEIDAL DG
Sbjct: 232 EDFDNRLVNHLAEEFKRKYRKDLRGNNRALRRLRTAAERAKRTLSSSTEASIEIDALMDG 291
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID+YTK+SRARFEELCSDLFRSTL PVEKAL DAK+DK +IHDVVLVGGSTRIPK+QSLL
Sbjct: 292 IDYYTKVSRARFEELCSDLFRSTLHPVEKALADAKMDKGSIHDVVLVGGSTRIPKIQSLL 351
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
QNFFCGK+LNLSINPDEAVAYGAAVQAAILSGD SSAIQDVLLVDV PLSLGIETAGGVM
Sbjct: 352 QNFFCGKTLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVM 411
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TK++ERN RIPCKQ+QTFTTY+DNQPAVTIQV+EGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 412 TKIVERNARIPCKQSQTFTTYSDNQPAVTIQVYEGERAMTKDNNLLGTFDLTGIPPAPRG 471
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VPKIDVTFDLDANGILNV AK+ S+GKS+NI IKNDKGRLS+EEIDRM+N+AE+YK+EDE
Sbjct: 472 VPKIDVTFDLDANGILNVLAKENSTGKSKNIVIKNDKGRLSREEIDRMVNEAEKYKEEDE 531
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
RQ+ +I+ARN LE+YVFNVKQA+D AG+KL ES+K R+EC A L WLDNNTLAD EE+
Sbjct: 532 RQRAKIAARNQLESYVFNVKQAVDEAGDKLPESDKQLVRDECQAALSWLDNNTLADVEEF 591
Query: 1162 QDKLQQLQKSCMPLMSKMHGG 1182
KLQ++QK C P+MSKMHG
Sbjct: 592 NYKLQEVQKKCSPIMSKMHGA 612
|
Source: Bemisia tabaci Species: Bemisia tabaci Genus: Bemisia Family: Aleyrodidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328700067|ref|XP_001945786.2| PREDICTED: heat shock protein 70 A1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/586 (83%), Positives = 537/586 (91%), Gaps = 8/586 (1%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGR+FDD K Q D+KHWPF VVNDC KPKIQVEFKGER
Sbjct: 52 GDAAKNQVAMNPVNTVFDAKRLIGRRFDDDKTQADIKHWPFKVVNDCGKPKIQVEFKGER 111
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG V DAVITVPAYFND+QRQATKDAGAIAGLNVMR
Sbjct: 112 KVFAPEEISSMVLTKMKETAEAYLGRDVTDAVITVPAYFNDSQRQATKDAGAIAGLNVMR 171
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVS+L IDEG++FEV+STAGDTHLGG
Sbjct: 172 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSVLQIDEGSIFEVKSTAGDTHLGG 231
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV HLAEEFKRK KKD+ NPRALRRLRTAAERAKRTLSSS+EA+IEIDAL +G
Sbjct: 232 EDFDNRLVCHLAEEFKRKSKKDVHTNPRALRRLRTAAERAKRTLSSSSEATIEIDALMEG 291
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
IDFYT++SRARFEELC+DLFRSTLQPVEKAL DAK+DK I+DVVLVGGSTRIPK+QSLL
Sbjct: 292 IDFYTRVSRARFEELCADLFRSTLQPVEKALADAKMDKGDINDVVLVGGSTRIPKIQSLL 351
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QN+FCGK LNLSINPDEAVAYGAAVQAAILSGD SSAIQDVLLVDVTPLSLGIETAGGVM
Sbjct: 352 QNYFCGKPLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVTPLSLGIETAGGVM 411
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TK++ERN+ IPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 412 TKIVERNSTIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 471
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VPKI+VTFD+DANGILNV+AK+ SSG+S+NI IKNDKGRLS+ EIDRM++DAERYK+EDE
Sbjct: 472 VPKIEVTFDMDANGILNVSAKENSSGRSKNIVIKNDKGRLSQAEIDRMLSDAERYKEEDE 531
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
RQK +I+A+N LE+YVF VKQALD AG+KLTESE++ ++ECDA ++WLDNN LADKEEY
Sbjct: 532 RQKVKIAAKNQLESYVFGVKQALDEAGDKLTESERNTGKQECDAVVQWLDNNQLADKEEY 591
Query: 2531 QDKLQQLQKSCMPLMSKMHGGASAGDMPRG--------GPTVEEVD 2568
+ KL+++QKSC LM K+HG AGD+P G GPTVEEVD
Sbjct: 592 EYKLKEIQKSCSSLMMKIHGAGQAGDVPPGAHGFPGSRGPTVEEVD 637
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|295393290|gb|ADG03465.1| heat shock protein 70 [Bemisia tabaci] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/561 (85%), Positives = 526/561 (93%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP+NT+FDAKRLIGR+FDDPKIQ DMKHWPF V+NDC KPK+QVEFKGE
Sbjct: 52 GDAAKNQVAMNPQNTIFDAKRLIGRRFDDPKIQADMKHWPFKVINDCGKPKLQVEFKGET 111
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTFAPEE+SSMVLTKMKETAEA+LG V+DAVITVPAYFND+QRQATKDAGAIAGLNV+R
Sbjct: 112 KTFAPEEVSSMVLTKMKETAEAFLGSQVKDAVITVPAYFNDSQRQATKDAGAIAGLNVLR 171
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 172 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 231
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+HLAEEFKRKY+KD+ N RALRRLRTAAERAKRTLSSSTEASIEIDAL DG
Sbjct: 232 EDFDNRLVNHLAEEFKRKYRKDLRGNNRALRRLRTAAERAKRTLSSSTEASIEIDALMDG 291
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID+YTK+SRARFEELCSDLFRSTL PVEKAL DAK+DK +IHDVVLVGGSTRIPK+QSLL
Sbjct: 292 IDYYTKVSRARFEELCSDLFRSTLHPVEKALADAKMDKGSIHDVVLVGGSTRIPKIQSLL 351
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
QNFFCGK+LNLSINPDEAVAYGAAVQAAILSGD SSAIQDVLLVDV PLSLGIETAGGVM
Sbjct: 352 QNFFCGKTLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVM 411
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TK++ERN RIPCKQ+QTFTTY+DNQPAVTIQV+EGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 412 TKIVERNARIPCKQSQTFTTYSDNQPAVTIQVYEGERAMTKDNNLLGTFDLTGIPPAPRG 471
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VPKIDVTFDLDANGILNV AK+ S+GKS+NI IKNDKGRLS+EEIDRM+N+AE+YK+EDE
Sbjct: 472 VPKIDVTFDLDANGILNVLAKENSTGKSKNIVIKNDKGRLSREEIDRMVNEAEKYKEEDE 531
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
RQ+ +I+ARN LE+YVFNVKQA+D AG+KL ES+K R+EC A L WLDNNTLAD EE+
Sbjct: 532 RQRAKIAARNQLESYVFNVKQAVDEAGDKLPESDKQLVRDECQAALSWLDNNTLADVEEF 591
Query: 1162 QDKLQQLQKSCMPLMSKMHGG 1182
KLQ++QK C P+MSKMHG
Sbjct: 592 NYKLQEVQKKCSPIMSKMHGA 612
|
Source: Bemisia tabaci Species: Bemisia tabaci Genus: Bemisia Family: Aleyrodidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|317135488|gb|ADV03160.1| heat shock protein 70 [Spodoptera litura] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/595 (81%), Positives = 542/595 (91%), Gaps = 17/595 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVA+NP NTVFDAKRLIGRKFDDPKIQ DMKHWPF VV+DCSKPKIQVEFKGE
Sbjct: 49 GDAAKNQVALNPSNTVFDAKRLIGRKFDDPKIQADMKHWPFRVVSDCSKPKIQVEFKGET 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG +VRDAVITVPAYFND+QRQATKDAGAIAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGTTVRDAVITVPAYFNDSQRQATKDAGAIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLA+EFKRKYKKDM +NPRALRRLRTAAERAKRTLSSSTEASIEIDALY+G
Sbjct: 229 EDFDNRLVNHLADEFKRKYKKDMRMNPRALRRLRTAAERAKRTLSSSTEASIEIDALYEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
IDFYT++SRARFEEL +DLFR TL+PVEKAL+DAK+DKS IHDVVLVGGSTRIPKVQSLL
Sbjct: 289 IDFYTRVSRARFEELNADLFRGTLEPVEKALKDAKMDKSQIHDVVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFFCGK LNLSINPDEAVAYGAAVQAAIL G+Q S IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QNFFCGKKLNLSINPDEAVAYGAAVQAAILGGEQDSKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TK+IERN +IPCKQ+QTFTTY+DNQPAVTIQV+EGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 409 TKIIERNCKIPCKQSQTFTTYSDNQPAVTIQVYEGERAMTKDNNLLGTFDLTGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VPKIDVTFDLDANGILNV+AK+ S+G+S+NI IKNDKGRLS+ EI+RM+ +AE+YKDEDE
Sbjct: 469 VPKIDVTFDLDANGILNVSAKENSTGRSKNIVIKNDKGRLSQAEIERMLAEAEKYKDEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
+Q++R+++RN LE+YVF+VKQALD AG+KLTE +KS R+ CD LKWLDNNTLA++EEY
Sbjct: 529 KQRQRVASRNQLESYVFSVKQALDEAGDKLTEQDKSTARDACDDALKWLDNNTLAEQEEY 588
Query: 2531 QDKLQQLQKSCMPLMSKMHGGAS--AGDMPRG---------------GPTVEEVD 2568
+ KL+ +Q+ C P+M+KMHG + A DMP G GPT+EEVD
Sbjct: 589 EHKLKDVQRVCSPVMAKMHGAGAQNADDMPGGMSEGMPGGYGGNQNSGPTIEEVD 643
|
Source: Spodoptera litura Species: Spodoptera litura Genus: Spodoptera Family: Noctuidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|423292561|gb|AFX84560.1| 70 kDa heat shock protein [Lygus hesperus] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/595 (81%), Positives = 540/595 (90%), Gaps = 17/595 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VVNDCSKPKIQV+FKGE+
Sbjct: 49 GDPAKNQVAMNPQNTVFDAKRLIGRKYDDPKIMEDMKHWPFKVVNDCSKPKIQVDFKGEK 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTFAPEEISSMVLTKMKETAEAYLG VRDAVITVPAYFND+QRQATKDAGAIAGLNVMR
Sbjct: 109 KTFAPEEISSMVLTKMKETAEAYLGKKVRDAVITVPAYFNDSQRQATKDAGAIAGLNVMR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKY+KD+ N RALRRLRTAAERAKRTLSSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVNHLAEEFKRKYRKDIKNNARALRRLRTAAERAKRTLSSSTEANIEIDALHEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTKISRARFEELC+DLFRSTLQPVEK L+DAK+DK +IHDVVLVGGSTRIPK+Q+LL
Sbjct: 289 ADFYTKISRARFEELCADLFRSTLQPVEKCLKDAKMDKGSIHDVVLVGGSTRIPKIQNLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFF GK+LN+SINPDEAVAYGAAVQAA+LSGDQSS IQDVLLVDVTPLS+GIETAGGVM
Sbjct: 349 QNFFNGKALNMSINPDEAVAYGAAVQAAVLSGDQSSQIQDVLLVDVTPLSMGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TK+IERN+RIPCKQ+QTFTTY+DNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 409 TKIIERNSRIPCKQSQTFTTYSDNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AKD+SSGKS+NI IKNDKGRLSKEEIDRM+N+AE+YK EDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKDSSSGKSKNIVIKNDKGRLSKEEIDRMVNEAEQYKAEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
Q+ERI+A+N LE+Y+F+VKQALD AG+KL+ S+K R +CD L+WLDNN+LADKEEY
Sbjct: 529 MQRERIAAKNQLESYIFSVKQALDEAGDKLSASDKETARSKCDDALRWLDNNSLADKEEY 588
Query: 2531 QDKLQQLQKSCMPLMSKMH-GGASAGDMPRG----------------GPTVEEVD 2568
Q KLQ+LQ C+ M K+H GA G G GPTVEEVD
Sbjct: 589 QHKLQELQNECVQFMKKIHQQGAPQGTQNCGQQSYNYGQPGSGFRNSGPTVEEVD 643
|
Source: Lygus hesperus Species: Lygus hesperus Genus: Lygus Family: Miridae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|423293164|gb|AFX84617.1| heat shock protein 70 [Frankliniella occidentalis] gi|423293176|gb|AFX84627.1| heat shock protein 70-3 [Frankliniella occidentalis] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/590 (81%), Positives = 538/590 (91%), Gaps = 12/590 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQ AMNPK+TVFDAKRLIGR+FDDPKIQ D+K WPF+V++D KPKIQV FKGER
Sbjct: 49 GDAAKNQTAMNPKDTVFDAKRLIGRRFDDPKIQADIKQWPFSVISDSGKPKIQVTFKGER 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K F+PEEISSMVLTKMKETAEAYLG +VRDAV+TVPAYFND+QRQATKDAG IAGLNVMR
Sbjct: 109 KVFSPEEISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGVIAGLNVMR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVS+LSIDEG+LFEV+STAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSVLSIDEGSLFEVKSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFD+RLV+HLAEEFKRKYKKD++ NPRALRRLRTAAERAKRTLSSSTEA+IEIDALY+G
Sbjct: 229 EDFDSRLVNHLAEEFKRKYKKDVTSNPRALRRLRTAAERAKRTLSSSTEANIEIDALYEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
IDFYTK+SRARFEELC+DLFR+TL PVE+ALQDAK+ KS IHDVVLVGGSTRIPKVQSLL
Sbjct: 289 IDFYTKVSRARFEELCADLFRATLTPVERALQDAKMSKSDIHDVVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQS AIQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSEAIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TK+IERN+RIPCKQTQTF+TYADNQPAV IQVFEGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 409 TKIIERNSRIPCKQTQTFSTYADNQPAVIIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VPKI+VTFDLDANGILNV AKDTSSG+SQNITIKNDKGRLS +EI RM+++AERYK ED+
Sbjct: 469 VPKIEVTFDLDANGILNVAAKDTSSGRSQNITIKNDKGRLSADEIQRMVDEAERYKAEDD 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
+Q++R++ARN LE YVF++KQA+D AG+KL E +K+R REEC+ATL+WLD+NTLADKEEY
Sbjct: 529 QQRDRVAARNQLEGYVFSIKQAIDEAGDKLPEQDKTRAREECEATLRWLDSNTLADKEEY 588
Query: 2531 QDKLQQLQKSCMPLMSKMHGGASAGDMPRG------------GPTVEEVD 2568
+ +L++LQ+ +M ++H G P+ GPTVEEVD
Sbjct: 589 EHRLKELQQKVQEVMVRLHSGGPGASQPQAPQGCGQQAGRHNGPTVEEVD 638
|
Source: Frankliniella occidentalis Species: Frankliniella occidentalis Genus: Frankliniella Family: Thripidae Order: Thysanoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|269859258|gb|ACZ52196.1| heat shock protein 70 [Bemisia tabaci] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/561 (84%), Positives = 526/561 (93%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP+NT+FDAKRLIGR++DDPKIQ DMKHWPF V+NDC KPK+QVEFKGE
Sbjct: 52 GDAAKNQVAMNPQNTIFDAKRLIGRRYDDPKIQDDMKHWPFKVINDCGKPKLQVEFKGET 111
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTFAPEE+SSMVLTKMKETAEA+LG V+DAVITVPAYFND+QRQATKDAGAIAGLNV+R
Sbjct: 112 KTFAPEEVSSMVLTKMKETAEAFLGSQVKDAVITVPAYFNDSQRQATKDAGAIAGLNVLR 171
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 172 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 231
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+HLAEEFKRKY+KD+ N RALRRLRTAAERAKRTLSSSTEASIEIDAL DG
Sbjct: 232 EDFDNRLVNHLAEEFKRKYRKDLRGNNRALRRLRTAAERAKRTLSSSTEASIEIDALMDG 291
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID+YTK+SRARFEELCSDLFRSTL PVEKAL DAK+DK +IHDVVLVGGSTRIPK+QSLL
Sbjct: 292 IDYYTKVSRARFEELCSDLFRSTLHPVEKALADAKMDKGSIHDVVLVGGSTRIPKIQSLL 351
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
QNFFCGK+LNLSINPDEAVAYGAAVQAAILSGD SSAIQDVLLVDV PLSLGIETAGGVM
Sbjct: 352 QNFFCGKTLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVM 411
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TK++ERN RIPCKQ+QTFTTY+DNQPAVTIQV+EGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 412 TKIVERNARIPCKQSQTFTTYSDNQPAVTIQVYEGERAMTKDNNLLGTFDLTGIPPAPRG 471
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VPKIDVTFDLDANGILNV+AK+ S+GKS+NI IKNDKGRLS+EEIDRM+N+AE+YK+EDE
Sbjct: 472 VPKIDVTFDLDANGILNVSAKENSTGKSKNIVIKNDKGRLSREEIDRMVNEAEKYKEEDE 531
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
+Q+ +I+ARN LE+YVFNVKQA+D AG+KL ES+K +EC A L WLDNNTLAD EE+
Sbjct: 532 KQRAKIAARNQLESYVFNVKQAVDEAGDKLPESDKQLVHDECQAALSWLDNNTLADVEEF 591
Query: 1162 QDKLQQLQKSCMPLMSKMHGG 1182
KLQ++QK C P+MSKMHG
Sbjct: 592 NYKLQEVQKKCSPIMSKMHGA 612
|
Source: Bemisia tabaci Species: Bemisia tabaci Genus: Bemisia Family: Aleyrodidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|264666928|gb|ACY71070.1| heat shock protein 70 [Bemisia tabaci] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/561 (84%), Positives = 526/561 (93%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP+NT+FDAKRLIGR++DDPKIQ DMKHWPF V+NDC KPK+QVEFKGE
Sbjct: 49 GDAAKNQVAMNPQNTIFDAKRLIGRRYDDPKIQDDMKHWPFKVINDCGKPKLQVEFKGET 108
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTFAPEE+SSMVLTKMKETAEA+LG V+DAVITVPAYFND+QRQATKDAGAIAGLNV+R
Sbjct: 109 KTFAPEEVSSMVLTKMKETAEAFLGGQVKDAVITVPAYFNDSQRQATKDAGAIAGLNVLR 168
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 228
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+HLAEEFKRKY+KD+ N RALRRLRTAAERAKRTLSSSTEASIEIDAL DG
Sbjct: 229 EDFDNRLVNHLAEEFKRKYRKDLRGNNRALRRLRTAAERAKRTLSSSTEASIEIDALMDG 288
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID+YTK+SRARFEELCSDLFRSTL PVEKAL DAK+DK +IHDVVLVGGSTRIPK+QSLL
Sbjct: 289 IDYYTKVSRARFEELCSDLFRSTLHPVEKALADAKMDKGSIHDVVLVGGSTRIPKIQSLL 348
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
QNFFCGK+LNLSINPDEAVAYGAAVQAAILSGD SSAIQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QNFFCGKTLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVM 408
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TK++ERN RIPCKQ+QTFTTY+DNQPAVTIQV+EGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 409 TKIVERNARIPCKQSQTFTTYSDNQPAVTIQVYEGERAMTKDNNLLGTFDLTGIPPAPRG 468
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VPKIDVTFDLDANGILNV+AK+ S+GKS+NI IKNDKGRLS+EEIDRM+N+AE+YK+EDE
Sbjct: 469 VPKIDVTFDLDANGILNVSAKENSTGKSKNIVIKNDKGRLSREEIDRMVNEAEKYKEEDE 528
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
+Q+ +I+ARN LE+YVFNVKQA+D AG+KL ES+K +EC A L WLDNNTLAD EE+
Sbjct: 529 KQRAKIAARNQLESYVFNVKQAVDEAGDKLPESDKQLVHDECQAALSWLDNNTLADVEEF 588
Query: 1162 QDKLQQLQKSCMPLMSKMHGG 1182
KLQ++QK C P+MSKMHG
Sbjct: 589 NYKLQEVQKKCSPIMSKMHGA 609
|
Source: Bemisia tabaci Species: Bemisia tabaci Genus: Bemisia Family: Aleyrodidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198250390|gb|ACH85197.1| heat shock protein 70 [Bemisia tabaci] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/561 (84%), Positives = 523/561 (93%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP+NT+FDAKRLIGR+FDDPKIQ DMKHWPF V+NDC KPK+QVEFKGE
Sbjct: 52 GDAAKNQVAMNPQNTIFDAKRLIGRRFDDPKIQADMKHWPFKVINDCGKPKLQVEFKGET 111
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K FAPEE+SSMVLTK KETAEA+LG V+DAVITVPAYFND+QRQATKDAGAIAGLNV+R
Sbjct: 112 KNFAPEEVSSMVLTKRKETAEAFLGSQVKDAVITVPAYFNDSQRQATKDAGAIAGLNVLR 171
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVR+TAGDTHLGG
Sbjct: 172 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGG 231
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+HLAEEFKRKY+KD+ N RALRRLRTAAERAKRTLSSSTEASIEIDAL DG
Sbjct: 232 EDFDNRLVNHLAEEFKRKYRKDLRGNNRALRRLRTAAERAKRTLSSSTEASIEIDALMDG 291
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID+YTK+SRARFEELCSDLFRSTL PVEKAL DAK+DK +IHDVVLVGGSTRIPK+QSLL
Sbjct: 292 IDYYTKVSRARFEELCSDLFRSTLHPVEKALADAKMDKGSIHDVVLVGGSTRIPKIQSLL 351
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
QNFFCGK+LNLSINPDEAVAYGAAVQAAILSGD SSAIQDV LVDV PLSLGIETAGGVM
Sbjct: 352 QNFFCGKTLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVPLVDVAPLSLGIETAGGVM 411
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TK++ERN RIPCKQ+QTFTTY+DNQPAVTIQV+EGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 412 TKIVERNARIPCKQSQTFTTYSDNQPAVTIQVYEGERAMTKDNNLLGTFDLTGIPPAPRG 471
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VPKIDVTFDLDANGILNV AK+ S+GKS+NI IKNDKGRLS+EEIDRM+N+AE+YK+EDE
Sbjct: 472 VPKIDVTFDLDANGILNVLAKENSTGKSKNIVIKNDKGRLSREEIDRMVNEAEKYKEEDE 531
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
RQ+ +I+ARN LE+YVFNVKQA+D AG+KL ES+K R+EC A L WLDNNTLAD EE+
Sbjct: 532 RQRAKIAARNQLESYVFNVKQAVDEAGDKLPESDKQLVRDECQAALSWLDNNTLADVEEF 591
Query: 1162 QDKLQQLQKSCMPLMSKMHGG 1182
KLQ++QK C P+MSKMHG
Sbjct: 592 NYKLQEVQKKCSPIMSKMHGA 612
|
Source: Bemisia tabaci Species: Bemisia tabaci Genus: Bemisia Family: Aleyrodidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198250398|gb|ACH85201.1| heat shock protein 70 [Trialeurodes vaporariorum] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/560 (84%), Positives = 524/560 (93%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP+NTVFDAKRLIGRKFDDPKIQ DMKHWPF V+NDC KPK+Q+EFKGE
Sbjct: 53 GDAAKNQVAMNPQNTVFDAKRLIGRKFDDPKIQADMKHWPFKVINDCGKPKLQIEFKGET 112
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K F PEEISSMVLTKMKETAE++LG +V+DAVITVPAYFND+QRQATKDAGAIAGLNV+R
Sbjct: 113 KRFNPEEISSMVLTKMKETAESFLGGTVKDAVITVPAYFNDSQRQATKDAGAIAGLNVLR 172
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 173 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 232
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+HL EEFKRKY+KD++ N RALRRLRTAAERAKRTLSSSTEASIEIDAL DG
Sbjct: 233 EDFDNRLVNHLVEEFKRKYRKDITSNSRALRRLRTAAERAKRTLSSSTEASIEIDALIDG 292
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID+YTK+SRARFEELCSDLFRSTL PVEKAL DA +DKS+IHDVVLVGGSTRIPKVQSLL
Sbjct: 293 IDYYTKVSRARFEELCSDLFRSTLHPVEKALADANMDKSSIHDVVLVGGSTRIPKVQSLL 352
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDV PLSLGIETAGGVM
Sbjct: 353 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVAPLSLGIETAGGVM 412
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TK++ERN RIPCKQTQTFTTYADNQPAVTIQV+EGERAMTKDNNLLGTFDLTGIPPAPRG
Sbjct: 413 TKVVERNARIPCKQTQTFTTYADNQPAVTIQVYEGERAMTKDNNLLGTFDLTGIPPAPRG 472
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VPK+DVTFDLDANGILNV+AK+ S+GK +NI IKND+GRLS+EEIDRM+N+AE+YK+ED+
Sbjct: 473 VPKVDVTFDLDANGILNVSAKECSTGKEKNIVIKNDRGRLSREEIDRMVNEAEKYKEEDD 532
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
+Q+E+I+ARN+LE+YVF VKQA + AG+KL++ +K R+EC L WLDNNTLAD EE+
Sbjct: 533 KQREKIAARNSLESYVFQVKQAAEEAGDKLSDGDKQTVRDECQEALSWLDNNTLADVEEF 592
Query: 1162 QDKLQQLQKSCMPLMSKMHG 1181
KL +LQK C P+MSK+HG
Sbjct: 593 NHKLMELQKKCSPIMSKLHG 612
|
Source: Trialeurodes vaporariorum Species: Trialeurodes vaporariorum Genus: Trialeurodes Family: Aleyrodidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2568 | ||||||
| UNIPROTKB|Q9GSU7 | 644 | Hsp70Ab "Major heat shock 70 k | 0.225 | 0.897 | 0.740 | 1.5e-234 | |
| FB|FBgn0001230 | 635 | Hsp68 "Heat shock protein 68" | 0.225 | 0.910 | 0.739 | 2.4e-234 | |
| UNIPROTKB|Q9GSU4 | 643 | Hsp70Ba "Major heat shock 70 k | 0.221 | 0.883 | 0.750 | 1.9e-232 | |
| FB|FBgn0013275 | 642 | Hsp70Aa "Heat-shock-protein-70 | 0.225 | 0.900 | 0.735 | 5.1e-232 | |
| FB|FBgn0013276 | 642 | Hsp70Ab "Heat-shock-protein-70 | 0.225 | 0.900 | 0.735 | 5.1e-232 | |
| FB|FBgn0013277 | 641 | Hsp70Ba "Heat-shock-protein-70 | 0.225 | 0.901 | 0.733 | 1.1e-231 | |
| FB|FBgn0013278 | 641 | Hsp70Bb "Heat-shock-protein-70 | 0.225 | 0.901 | 0.733 | 1.1e-231 | |
| FB|FBgn0013279 | 641 | Hsp70Bc "Heat-shock-protein-70 | 0.225 | 0.901 | 0.733 | 1.1e-231 | |
| FB|FBgn0051354 | 641 | Hsp70Bbb "Hsp70Bbb" [Drosophil | 0.225 | 0.901 | 0.731 | 5.9e-231 | |
| FB|FBgn0001217 | 633 | Hsc70-2 "Heat shock protein co | 0.225 | 0.913 | 0.712 | 7.7e-222 |
| UNIPROTKB|Q9GSU7 Hsp70Ab "Major heat shock 70 kDa protein Ab" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 1.5e-234, Sum P(2) = 1.5e-234
Identities = 432/583 (74%), Positives = 497/583 (85%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +D+KHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDIKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K FAPEEISSMVL KMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLVKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 861
EDFDNRLV+HLAEEFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 922 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
Q FF GK+LNLSINPDE ILSGDQ+ IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQTGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 1102 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 1160
+Q++RI++RN LE+YVFNVKQA+D A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KQRQRITSRNALESYVFNVKQAVDQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEE 588
Query: 1161 YQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTNFFCGK 1203
+ KL++L + C P+M+KMH GA AG GGP CG+
Sbjct: 589 FDHKLEELTRHCSPIMTKMHQQGAGAGAG---AGGP-GANCGQ 627
|
|
| FB|FBgn0001230 Hsp68 "Heat shock protein 68" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2260 (800.6 bits), Expect = 2.4e-234, P = 2.4e-234
Identities = 434/587 (73%), Positives = 502/587 (85%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNPKN+VFDAKRLIGR+FDD KIQ+D+KHWPF V+ND KPKI VEFKG
Sbjct: 49 GDAAKNQVAMNPKNSVFDAKRLIGRRFDDSKIQEDIKHWPFKVINDNGKPKISVEFKGAN 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K F+PEEISSMVLTKMKETAEAYLG +V+DAVITVPAYFND+QRQATKDAGAIAG+NV+R
Sbjct: 109 KCFSPEEISSMVLTKMKETAEAYLGTTVKDAVITVPAYFNDSQRQATKDAGAIAGINVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+H AEEFKRKYKKD+ NP SSSTEAS+EIDALY+G
Sbjct: 229 EDFDNRLVNHFAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEASLEIDALYEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFY+K+SRARFEELC DLFR+TL+PVEKAL+DAK+DKS IHD+VLVGGSTRIPKVQ+LL
Sbjct: 289 HDFYSKVSRARFEELCGDLFRNTLEPVEKALKDAKMDKSQIHDIVLVGGSTRIPKVQNLL 348
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
QNFF GK+LNLSINPDE ILSGD+SS I+DVLLVDV PLSLGIETAGGVM
Sbjct: 349 QNFFGGKTLNLSINPDEAVAYGAAIQAAILSGDKSSEIKDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN+RIPCKQ++TFTTYADNQPAVTIQVFEGERA+TKDNN+LGTFDLTG+PPAPRG
Sbjct: 409 TKLIERNSRIPCKQSKTFTTYADNQPAVTIQVFEGERALTKDNNVLGTFDLTGVPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VPKIDVTFDLDANGILNVTAK+ +G ++NITIKNDKGRLS+ +IDRM+++AE+Y +EDE
Sbjct: 469 VPKIDVTFDLDANGILNVTAKEQGTGNAKNITIKNDKGRLSQADIDRMLSEAEKYAEEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
R ++RI+ARN LE Y+F VK+A +N G++++ ++KS E C +KWLD+NT A+KEEY
Sbjct: 529 RHRQRIAARNQLETYLFGVKEAAENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEY 588
Query: 2531 QDKLQQLQKSCMPLMSKMH-GGASAGDMPR-G-------GPTVEEVD 2568
+ KL++L++ C P+M+KMH GG P G GPTVEEVD
Sbjct: 589 EYKLKELEQFCSPIMTKMHKGGGDGQQAPNFGQQAGGYKGPTVEEVD 635
|
|
| UNIPROTKB|Q9GSU4 Hsp70Ba "Major heat shock 70 kDa protein Ba" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 2242 (794.3 bits), Expect = 1.9e-232, P = 1.9e-232
Identities = 428/570 (75%), Positives = 494/570 (86%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+DC KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDCGKPKIGVEYKGES 108
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K FAPEEISSMVL KMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLAKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 861
EDFDNRLV+HLAEEFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALTDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 922 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
Q FF GK+LNLSINPDE ILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 1102 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 1160
+Q++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KQRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEE 588
Query: 1161 YQDKLQQLQKSCMPLMSKMHG-GAGGASAG 1189
+ K+++L + C P+M+KMH GAG +AG
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAGAAG 618
|
|
| FB|FBgn0013275 Hsp70Aa "Heat-shock-protein-70Aa" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2238 (792.9 bits), Expect = 5.1e-232, P = 5.1e-232
Identities = 437/594 (73%), Positives = 502/594 (84%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+HLA+EFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLADEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q+FF GK+LNLSINPDE ILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QDFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TYADNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQA++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--G--------GASAGDMPRG-----GPTVEEVD 2568
+ KL++L + C P+M+KMH G GA+ G G GPTVEEVD
Sbjct: 589 FDHKLEELTRHCSPIMTKMHQQGAGAGAGGPGANCGQQAGGFGGYSGPTVEEVD 642
|
|
| FB|FBgn0013276 Hsp70Ab "Heat-shock-protein-70Ab" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2238 (792.9 bits), Expect = 5.1e-232, P = 5.1e-232
Identities = 437/594 (73%), Positives = 502/594 (84%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+HLA+EFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLADEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q+FF GK+LNLSINPDE ILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QDFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TYADNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYADNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQA++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQAVEQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--G--------GASAGDMPRG-----GPTVEEVD 2568
+ KL++L + C P+M+KMH G GA+ G G GPTVEEVD
Sbjct: 589 FDHKLEELTRHCSPIMTKMHQQGAGAGAGGPGANCGQQAGGFGGYSGPTVEEVD 642
|
|
| FB|FBgn0013277 Hsp70Ba "Heat-shock-protein-70Ba" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2235 (791.8 bits), Expect = 1.1e-231, P = 1.1e-231
Identities = 435/593 (73%), Positives = 501/593 (84%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDE ILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--G-------GASAGDMPRG-----GPTVEEVD 2568
+ K+++L + C P+M+KMH G GA+ G G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
|
| FB|FBgn0013278 Hsp70Bb "Heat-shock-protein-70Bb" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2235 (791.8 bits), Expect = 1.1e-231, P = 1.1e-231
Identities = 435/593 (73%), Positives = 501/593 (84%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDE ILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--G-------GASAGDMPRG-----GPTVEEVD 2568
+ K+++L + C P+M+KMH G GA+ G G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
|
| FB|FBgn0013279 Hsp70Bc "Heat-shock-protein-70Bc" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2235 (791.8 bits), Expect = 1.1e-231, P = 1.1e-231
Identities = 435/593 (73%), Positives = 501/593 (84%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDE ILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--G-------GASAGDMPRG-----GPTVEEVD 2568
+ K+++L + C P+M+KMH G GA+ G G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
|
| FB|FBgn0051354 Hsp70Bbb "Hsp70Bbb" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2228 (789.4 bits), Expect = 5.9e-231, P = 5.9e-231
Identities = 434/593 (73%), Positives = 500/593 (84%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMNP+NTVFDAKRLIGRK+DDPKI +DMKHWPF VV+D KPKI VE+KGE
Sbjct: 49 GDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGES 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKMKETAEAYLG S+ DAVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLK ERNVLIFDLGGGTFDVSIL+IDEG+LFEVRSTAGDTHLGG
Sbjct: 169 IINEPTAAALAYGLDKNLKDERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGG 228
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+HLAEEFKRKYKKD+ NP SSSTEA+IEIDAL++G
Sbjct: 229 EDFDNRLVTHLAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEIDALFEG 288
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DFYTK+SRARFEELC+DLFR+TLQPVEKAL DAK+DK IHD+VLVGGSTRIPKVQSLL
Sbjct: 289 QDFYTKVSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLL 348
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q FF GK+LNLSINPDE ILSGDQS IQDVLLVDV PLSLGIETAGGVM
Sbjct: 349 QEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDVLLVDVAPLSLGIETAGGVM 408
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
TKLIERN RIPCKQT+TF+TY+DNQP V+IQV+EGERAMTKDNN LGTFDL+GIPPAPRG
Sbjct: 409 TKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRG 468
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFDLDANGILNV+AK+ S+GK++NITIKNDKGRLS+ EIDRM+N+AE+Y DEDE
Sbjct: 469 VPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAEKYADEDE 528
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ++RI++RN LE+YVFNVKQ+++ A KL E++K+ ++C+ T++WLD+NT A+KEE
Sbjct: 529 KHRQRITSRNALESYVFNVKQSVEQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEE 588
Query: 2530 YQDKLQQLQKSCMPLMSKMH--G-------GASAGDMPRG-----GPTVEEVD 2568
+ K+++L + C P+M+KMH G GA+ G G GPTVEEVD
Sbjct: 589 FDHKMEELTRHCSPIMTKMHQQGAGAAGGPGANCGQQAGGFGGYSGPTVEEVD 641
|
|
| FB|FBgn0001217 Hsc70-2 "Heat shock protein cognate 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2142 (759.1 bits), Expect = 7.7e-222, P = 7.7e-222
Identities = 414/581 (71%), Positives = 485/581 (83%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GD AKNQVAMN KNTVFDAKRLIGRKFDD KIQ+D+K WPF V+N+ KPKI+VEFKGER
Sbjct: 52 GDPAKNQVAMNAKNTVFDAKRLIGRKFDDKKIQEDLKLWPFKVINEKGKPKIEVEFKGER 111
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FAPEEISSMVLTKM+E AE YLG V+DAV+TVPAYFND+QRQATKDAG+IAGLNV+R
Sbjct: 112 KRFAPEEISSMVLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAGSIAGLNVLR 171
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVS+LSIDEG+LFEV++TAGDTHLGG
Sbjct: 172 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSVLSIDEGSLFEVKATAGDTHLGG 231
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPXXXXXXXXXXXXXXXXXSSSTEASIEIDALYDG 2230
EDFDNRLV+H AEEFKRK+K D+ N SSSTEAS+EIDAL++G
Sbjct: 232 EDFDNRLVNHFAEEFKRKHKSDIKGNARALRRLRTACERAKRTLSSSTEASLEIDALHEG 291
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
IDFY+KISRARFEEL DLFRST+QPVE+AL DAK+DK AIHDVVLVGGSTRIPK+Q LL
Sbjct: 292 IDFYSKISRARFEELNMDLFRSTMQPVERALSDAKMDKKAIHDVVLVGGSTRIPKIQKLL 351
Query: 2291 QNFFCGKSLNLSINPDEXXXXXXXXXXXILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q+ F GK LNLSINPDE IL+G SS IQD+LLVDV PLSLGIETAGGVM
Sbjct: 352 QDLFGGKQLNLSINPDEAVAYGAAVQAAILTGVGSSQIQDLLLVDVAPLSLGIETAGGVM 411
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
T L+ERN RIPCKQ Q FTTY+DNQ AVTIQV+EGERAMTKDNNLLGTF+LTGIPPAPRG
Sbjct: 412 TNLVERNARIPCKQQQIFTTYSDNQNAVTIQVYEGERAMTKDNNLLGTFNLTGIPPAPRG 471
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+V FDL+A+GILNV AKD S+GKS+ ITI NDKGRLSK EIDRM+++AE+YK ED+
Sbjct: 472 VPQIEVAFDLNADGILNVNAKDNSTGKSEKITISNDKGRLSKAEIDRMLSEAEKYKVEDD 531
Query: 2471 RQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
RQ+ER+ ++NNLEAY++ +QA+D+A L+E+E+S+ R++C + WLD N+LA+KEE
Sbjct: 532 RQRERVQSKNNLEAYIYACRQAVDDAPSGVLSETERSKVRDKCSSEASWLDKNSLAEKEE 591
Query: 2530 YQDKLQQLQKSCMPLMSKMHGGASA-GDMPRGG-PTVEEVD 2568
++ L++ Q+ C P+MSK+HGG M +G PTVEEVD
Sbjct: 592 FESHLKECQRICTPIMSKIHGGKKGKSSMGKGSHPTVEEVD 632
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P08107 | HSP71_HUMAN | No assigned EC number | 0.7344 | 0.2172 | 0.8705 | yes | N/A |
| P09446 | HSP7A_CAEEL | No assigned EC number | 0.7224 | 0.2172 | 0.8718 | yes | N/A |
| P17879 | HS71B_MOUSE | No assigned EC number | 0.7179 | 0.2246 | 0.8987 | yes | N/A |
| Q27975 | HS71A_BOVIN | No assigned EC number | 0.7344 | 0.2172 | 0.8705 | yes | N/A |
| Q5R7D3 | HSP71_PONAB | No assigned EC number | 0.7344 | 0.2172 | 0.8705 | yes | N/A |
| Q61696 | HS71A_MOUSE | No assigned EC number | 0.7097 | 0.2227 | 0.8923 | yes | N/A |
| Q7YQC6 | HSP71_CANFA | No assigned EC number | 0.7018 | 0.2223 | 0.8907 | yes | N/A |
| Q07439 | HSP71_RAT | No assigned EC number | 0.7085 | 0.2223 | 0.8907 | yes | N/A |
| O97125 | HSP68_DROME | No assigned EC number | 0.7819 | 0.2250 | 0.9102 | yes | N/A |
| Q27965 | HS71B_BOVIN | No assigned EC number | 0.7344 | 0.2172 | 0.8705 | yes | N/A |
| P34930 | HS71A_PIG | No assigned EC number | 0.7123 | 0.2246 | 0.9001 | yes | N/A |
| Q6S4N2 | HS71B_PIG | No assigned EC number | 0.7051 | 0.2223 | 0.8907 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2568 | |||
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 0.0 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 0.0 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 0.0 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 0.0 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 0.0 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 0.0 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-180 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-180 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-180 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-179 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-175 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-175 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-175 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-173 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-156 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-156 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-156 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-155 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-153 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-152 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-152 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-152 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-151 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-151 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-151 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-150 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-143 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-143 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-143 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-142 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 1e-142 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 1e-142 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 1e-142 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 1e-141 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 1e-132 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 1e-132 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 1e-132 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 1e-132 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-121 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-121 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-121 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-120 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-120 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-120 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-120 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-119 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 1e-112 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 1e-106 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-104 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-104 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-104 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-104 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-102 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-102 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-102 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-102 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-101 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-101 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-101 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-101 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 2e-98 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 2e-96 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-93 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-93 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-93 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-93 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 1e-92 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 1e-92 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 1e-92 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 1e-91 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 7e-91 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 2e-90 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 2e-90 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 6e-90 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 7e-81 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 2e-80 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 2e-80 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 2e-79 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 2e-78 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 2e-78 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 3e-78 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 1e-77 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 4e-77 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 4e-77 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 4e-77 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-76 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 4e-76 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 2e-75 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 4e-75 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 4e-75 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 4e-75 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 1e-74 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 3e-74 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 8e-73 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 5e-72 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 6e-72 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 6e-72 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 6e-72 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 2e-67 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-64 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-58 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 5e-56 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 2e-55 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 4e-42 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-31 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-31 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-31 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-31 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 4e-16 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 4e-16 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 4e-16 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 4e-16 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 1e-11 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 1e-11 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 1e-11 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 1e-11 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 6e-10 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-08 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-08 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-08 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-08 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 2e-07 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 2e-07 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 2e-07 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 2e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 7e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 7e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 7e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 7e-07 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-06 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-06 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-06 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-06 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 2e-06 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 2e-06 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 2e-06 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 2e-06 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 4e-06 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 4e-06 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 4e-06 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 4e-06 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 9e-06 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 9e-06 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 9e-06 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 9e-06 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 9e-06 | |
| COG0849 | 418 | COG0849, ftsA, Cell division ATPase FtsA [Cell div | 9e-06 | |
| COG0849 | 418 | COG0849, ftsA, Cell division ATPase FtsA [Cell div | 9e-06 | |
| COG0849 | 418 | COG0849, ftsA, Cell division ATPase FtsA [Cell div | 9e-06 | |
| COG0849 | 418 | COG0849, ftsA, Cell division ATPase FtsA [Cell div | 9e-06 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 3e-05 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 3e-05 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 3e-05 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 3e-05 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 3e-05 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 3e-05 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 3e-05 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 3e-05 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 7e-05 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 7e-05 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 7e-05 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 7e-05 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 2e-04 | |
| cd10227 | 312 | cd10227, ParM_like, Plasmid segregation protein Pa | 0.001 | |
| cd10227 | 312 | cd10227, ParM_like, Plasmid segregation protein Pa | 0.001 | |
| cd10227 | 312 | cd10227, ParM_like, Plasmid segregation protein Pa | 0.001 | |
| cd10227 | 312 | cd10227, ParM_like, Plasmid segregation protein Pa | 0.001 | |
| cd11736 | 468 | cd11736, HSPA12B_like_NBD, Nucleotide-binding doma | 0.002 | |
| cd11736 | 468 | cd11736, HSPA12B_like_NBD, Nucleotide-binding doma | 0.002 | |
| cd11736 | 468 | cd11736, HSPA12B_like_NBD, Nucleotide-binding doma | 0.002 | |
| cd11736 | 468 | cd11736, HSPA12B_like_NBD, Nucleotide-binding doma | 0.002 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 0.003 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 0.004 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 0.004 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 0.004 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 0.004 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 0.004 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 0.004 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 0.004 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 970 bits (2509), Expect = 0.0
Identities = 402/585 (68%), Positives = 483/585 (82%), Gaps = 5/585 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 680
GDAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE
Sbjct: 52 GDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGE 111
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
+KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+
Sbjct: 112 KKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVL 171
Query: 741 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
RI+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLG
Sbjct: 172 RIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLG 230
Query: 801 GEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 859
GEDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L+
Sbjct: 231 GEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLF 290
Query: 860 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 919
+GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQS
Sbjct: 291 EGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQS 350
Query: 920 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 979
L+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGG
Sbjct: 351 LIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410
Query: 980 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1039
VMTKLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAP
Sbjct: 411 VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAP 470
Query: 1040 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1099
RGVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK E
Sbjct: 471 RGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAE 530
Query: 1100 DERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
DE +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+
Sbjct: 531 DEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAE 590
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTNFFCG 1202
KEE++ K ++++ C P+M+KM+ AGG G MP G P G
Sbjct: 591 KEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGG 635
|
Length = 653 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 967 bits (2502), Expect = 0.0
Identities = 407/603 (67%), Positives = 488/603 (80%), Gaps = 26/603 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 2049
GDAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE
Sbjct: 52 GDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGE 111
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
+KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+
Sbjct: 112 KKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVL 171
Query: 2110 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
RI+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLG
Sbjct: 172 RIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLG 230
Query: 2170 GEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 2228
GEDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L+
Sbjct: 231 GEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLF 290
Query: 2229 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 2288
+GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQS
Sbjct: 291 EGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQS 350
Query: 2289 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 2348
L+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGG
Sbjct: 351 LIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410
Query: 2349 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 2408
VMTKLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAP
Sbjct: 411 VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAP 470
Query: 2409 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 2468
RGVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK E
Sbjct: 471 RGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAE 530
Query: 2469 DERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
DE +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+
Sbjct: 531 DEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAE 590
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMH---GGASAGDMPRG------------------GPTVE 2565
KEE++ K ++++ C P+M+KM+ GG G MP G GPTVE
Sbjct: 591 KEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGAGASSGPTVE 650
Query: 2566 EVD 2568
EVD
Sbjct: 651 EVD 653
|
Length = 653 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 965 bits (2495), Expect = 0.0
Identities = 399/578 (69%), Positives = 481/578 (83%), Gaps = 5/578 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 107
GDAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE
Sbjct: 52 GDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGE 111
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
+KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+
Sbjct: 112 KKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVL 171
Query: 168 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
RI+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLG
Sbjct: 172 RIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLG 230
Query: 228 GEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 286
GEDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L+
Sbjct: 231 GEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLF 290
Query: 287 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 346
+GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQS
Sbjct: 291 EGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQS 350
Query: 347 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 406
L+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGG
Sbjct: 351 LIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410
Query: 407 VMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 466
VM+KLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAP
Sbjct: 411 VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAP 470
Query: 467 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 526
RGVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK E
Sbjct: 471 RGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAE 530
Query: 527 DERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
DE +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+
Sbjct: 531 DEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAE 590
Query: 585 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 622
KEE++ K ++++ C P+M+KM+ AGG G MP G
Sbjct: 591 KEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGM 628
|
Length = 653 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 964 bits (2494), Expect = 0.0
Identities = 399/577 (69%), Positives = 480/577 (83%), Gaps = 5/577 (0%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGER 1477
DAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE+
Sbjct: 53 DAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEK 112
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 113 KTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLR 172
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
I+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 173 IINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 231
Query: 1598 EDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 1656
EDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L++
Sbjct: 232 EDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFE 291
Query: 1657 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQSL
Sbjct: 292 GIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSL 351
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 1776
+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGGV
Sbjct: 352 IKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGV 411
Query: 1777 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1836
MTKLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAPR
Sbjct: 412 MTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPR 471
Query: 1837 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1896
GVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK ED
Sbjct: 472 GVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAED 531
Query: 1897 ERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
E +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+K
Sbjct: 532 EANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEK 591
Query: 1955 EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 1991
EE++ K ++++ C P+M+KM+ AGG G MP G
Sbjct: 592 EEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGM 628
|
Length = 653 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 872 bits (2256), Expect = 0.0
Identities = 346/563 (61%), Positives = 424/563 (75%), Gaps = 16/563 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 680
G AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 47 GQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE 106
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+
Sbjct: 107 --TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVL 164
Query: 741 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
RI+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLG
Sbjct: 165 RIINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLG 222
Query: 801 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY 859
GEDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 223 GEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAM 282
Query: 860 -DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 918
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 283 ADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 919 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 978
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET G
Sbjct: 343 ELVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLG 399
Query: 979 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1038
GVMTKLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPA
Sbjct: 400 GVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPA 459
Query: 1039 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1098
PRGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y
Sbjct: 460 PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAA 518
Query: 1099 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-AD 1157
ED+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL D
Sbjct: 519 EDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGED 574
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMH 1180
KEE + K ++LQK P+ +M+
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMY 597
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 872 bits (2256), Expect = 0.0
Identities = 346/563 (61%), Positives = 424/563 (75%), Gaps = 16/563 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 2049
G AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 47 GQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE 106
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+
Sbjct: 107 --TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVL 164
Query: 2110 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
RI+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLG
Sbjct: 165 RIINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLG 222
Query: 2170 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY 2228
GEDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 223 GEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAM 282
Query: 2229 -DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 2287
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 283 ADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 2288 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 2347
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET G
Sbjct: 343 ELVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLG 399
Query: 2348 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 2407
GVMTKLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPA
Sbjct: 400 GVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPA 459
Query: 2408 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 2467
PRGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y
Sbjct: 460 PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAA 518
Query: 2468 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-AD 2526
ED+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL D
Sbjct: 519 EDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGED 574
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMH 2549
KEE + K ++LQK P+ +M+
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMY 597
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 870 bits (2250), Expect = 0.0
Identities = 345/563 (61%), Positives = 424/563 (75%), Gaps = 16/563 (2%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 107
G AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 47 GQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE 106
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+
Sbjct: 107 --TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVL 164
Query: 168 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
RI+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLG
Sbjct: 165 RIINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLG 222
Query: 228 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY 286
GEDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 223 GEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAM 282
Query: 287 -DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 345
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 283 ADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 346 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 405
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET G
Sbjct: 343 ELVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLG 399
Query: 406 GVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 465
GVM+KLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPA
Sbjct: 400 GVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPA 459
Query: 466 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 525
PRGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y
Sbjct: 460 PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAA 518
Query: 526 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-AD 584
ED+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL D
Sbjct: 519 EDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGED 574
Query: 585 KEEYQDKLQQLQKSCMPLMSKMH 607
KEE + K ++LQK P+ +M+
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMY 597
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 870 bits (2249), Expect = 0.0
Identities = 345/562 (61%), Positives = 423/562 (75%), Gaps = 16/562 (2%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGER 1477
AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 48 QAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE- 106
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 107 -TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLR 165
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
I+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY- 1655
EDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 224 EDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMA 283
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 284 DGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQE 343
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 1775
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET GG
Sbjct: 344 LVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLGG 400
Query: 1776 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1835
VMTKLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPAP
Sbjct: 401 VMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAP 460
Query: 1836 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1895
RGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y E
Sbjct: 461 RGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAE 519
Query: 1896 DERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-ADK 1954
D+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL DK
Sbjct: 520 DKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGEDK 575
Query: 1955 EEYQDKLQQLQKSCMPLMSKMH 1976
EE + K ++LQK P+ +M+
Sbjct: 576 EEIEAKTEELQKVVQPIGERMY 597
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 805 bits (2083), Expect = 0.0
Identities = 300/573 (52%), Positives = 395/573 (68%), Gaps = 21/573 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG-- 105
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 106 KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 165
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGG 222
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITAD 282
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P V
Sbjct: 283 ASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAV 342
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET
Sbjct: 343 QELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETL 397
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVMTKLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPP
Sbjct: 398 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPP 457
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE
Sbjct: 458 APRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANA 516
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
+ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L D
Sbjct: 517 EEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---D 573
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGD 1190
KE + K ++L ++ L M+ A A
Sbjct: 574 KEAIKAKTEELTQASQKLGEAMYQQAQAAQGAA 606
|
Length = 627 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 805 bits (2081), Expect = 0.0
Identities = 300/578 (51%), Positives = 395/578 (68%), Gaps = 21/578 (3%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G K
Sbjct: 52 QPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG--K 106
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI
Sbjct: 107 KYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRI 166
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG+
Sbjct: 167 INEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGGD 223
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALY 1655
DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 224 DFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADA 283
Query: 1656 DG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P VQ
Sbjct: 284 SGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQ 343
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET G
Sbjct: 344 ELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLG 398
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVMTKLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPPA
Sbjct: 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPA 458
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE +
Sbjct: 459 PRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANAE 517
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L DK
Sbjct: 518 EDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DK 574
Query: 1955 EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGD 1992
E + K ++L ++ L M+ A A D
Sbjct: 575 EAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKD 612
|
Length = 627 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 804 bits (2080), Expect = 0.0
Identities = 300/579 (51%), Positives = 396/579 (68%), Gaps = 21/579 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG-- 105
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 106 KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 165
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGG 222
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITAD 282
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P V
Sbjct: 283 ASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAV 342
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET
Sbjct: 343 QELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETL 397
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM+KLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPP
Sbjct: 398 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPP 457
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE
Sbjct: 458 APRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANA 516
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
+ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L D
Sbjct: 517 EEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---D 573
Query: 585 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGD 623
KE + K ++L ++ L M+ A A D
Sbjct: 574 KEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKD 612
|
Length = 627 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 803 bits (2077), Expect = 0.0
Identities = 304/591 (51%), Positives = 399/591 (67%), Gaps = 30/591 (5%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG-- 105
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 106 KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 165
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGG 222
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITAD 282
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P V
Sbjct: 283 ASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAV 342
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET
Sbjct: 343 QELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETL 397
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVMTKLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPP
Sbjct: 398 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPP 457
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE
Sbjct: 458 APRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANA 516
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
+ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L D
Sbjct: 517 EEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---D 573
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPT---------VEEVD 2568
KE + K ++L ++ L M+ A A G EEV
Sbjct: 574 KEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKDDDVVDAEFEEVK 624
|
Length = 627 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 723 bits (1869), Expect = 0.0
Identities = 305/562 (54%), Positives = 394/562 (70%), Gaps = 21/562 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K +
Sbjct: 49 GQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDG 102
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 103 KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 162
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG
Sbjct: 163 IINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGG 220
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 221 DDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITAD 280
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP V
Sbjct: 281 ASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAV 340
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET
Sbjct: 341 QELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETL 395
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVMTKLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPP
Sbjct: 396 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPP 455
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE
Sbjct: 456 APRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANA 514
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
+ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 515 EEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---D 571
Query: 1158 KEEYQDKLQQLQKSCMPLMSKM 1179
EE + K ++LQ++ L M
Sbjct: 572 VEEIKAKTEELQQALQKLAEAM 593
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 723 bits (1869), Expect = 0.0
Identities = 305/562 (54%), Positives = 394/562 (70%), Gaps = 21/562 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K +
Sbjct: 49 GQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDG 102
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 103 KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 162
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG
Sbjct: 163 IINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGG 220
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 221 DDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITAD 280
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP V
Sbjct: 281 ASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAV 340
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET
Sbjct: 341 QELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETL 395
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVMTKLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPP
Sbjct: 396 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPP 455
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE
Sbjct: 456 APRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANA 514
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
+ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 515 EEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---D 571
Query: 2527 KEEYQDKLQQLQKSCMPLMSKM 2548
EE + K ++LQ++ L M
Sbjct: 572 VEEIKAKTEELQQALQKLAEAM 593
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 721 bits (1862), Expect = 0.0
Identities = 304/562 (54%), Positives = 394/562 (70%), Gaps = 21/562 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K +
Sbjct: 49 GQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDG 102
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 103 KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 162
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG
Sbjct: 163 IINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGG 220
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 221 DDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITAD 280
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP V
Sbjct: 281 ASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAV 340
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET
Sbjct: 341 QELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETL 395
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM+KLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPP
Sbjct: 396 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPP 455
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE
Sbjct: 456 APRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANA 514
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
+ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 515 EEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---D 571
Query: 585 KEEYQDKLQQLQKSCMPLMSKM 606
EE + K ++LQ++ L M
Sbjct: 572 VEEIKAKTEELQQALQKLAEAM 593
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 721 bits (1862), Expect = 0.0
Identities = 304/561 (54%), Positives = 393/561 (70%), Gaps = 21/561 (3%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K + K
Sbjct: 50 QPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDGK 103
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI
Sbjct: 104 EYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRI 163
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG+
Sbjct: 164 INEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGGD 221
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALY 1655
DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 222 DFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADA 281
Query: 1656 DG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP VQ
Sbjct: 282 SGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQ 341
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET G
Sbjct: 342 ELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLG 396
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVMTKLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPPA
Sbjct: 397 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPA 456
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE +
Sbjct: 457 PRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAE 515
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 516 EDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DV 572
Query: 1955 EEYQDKLQQLQKSCMPLMSKM 1975
EE + K ++LQ++ L M
Sbjct: 573 EEIKAKTEELQQALQKLAEAM 593
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 688 bits (1777), Expect = 0.0
Identities = 269/331 (81%), Positives = 298/331 (90%), Gaps = 1/331 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
GDAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE
Sbjct: 47 GDAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGET 106
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
KTF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 107 KTFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLR 166
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 167 IINEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 225
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
EDFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++G
Sbjct: 226 EDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 285
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
IDFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LL
Sbjct: 286 IDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLL 345
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
Q+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 346 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 688 bits (1777), Expect = 0.0
Identities = 269/331 (81%), Positives = 298/331 (90%), Gaps = 1/331 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE
Sbjct: 47 GDAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGET 106
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 107 KTFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLR 166
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 167 IINEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 225
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++G
Sbjct: 226 EDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 285
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
IDFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LL
Sbjct: 286 IDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLL 345
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
Q+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 346 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 688 bits (1777), Expect = 0.0
Identities = 269/331 (81%), Positives = 298/331 (90%), Gaps = 1/331 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE
Sbjct: 47 GDAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGET 106
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 107 KTFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLR 166
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 167 IINEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 225
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++G
Sbjct: 226 EDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 285
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
IDFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LL
Sbjct: 286 IDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLL 345
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
Q+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 346 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 685 bits (1770), Expect = 0.0
Identities = 268/330 (81%), Positives = 297/330 (90%), Gaps = 1/330 (0%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
DAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE K
Sbjct: 48 DAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETK 107
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
TF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+RI
Sbjct: 108 TFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRI 167
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGGE
Sbjct: 168 INEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGE 226
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++GI
Sbjct: 227 DFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGI 286
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
DFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LLQ
Sbjct: 287 DFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQ 346
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 347 DFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 647 bits (1670), Expect = 0.0
Identities = 305/558 (54%), Positives = 385/558 (68%), Gaps = 36/558 (6%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AAK Q NP+NT+F KR IGR + KI VE G
Sbjct: 55 GQAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG-- 92
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R
Sbjct: 93 KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLR 152
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG
Sbjct: 153 LINEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGG 209
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
+DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++
Sbjct: 210 DDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD 269
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L+
Sbjct: 270 IDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELV 329
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
+ FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV
Sbjct: 330 KEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVR 384
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
T +IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRG
Sbjct: 385 TPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRG 444
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VP+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D+
Sbjct: 445 VPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDK 503
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
+ +E + ARN E+ ++++++AL K++E EK + E + L+ +KEE
Sbjct: 504 KFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEI 558
Query: 1162 QDKLQQLQKSCMPLMSKM 1179
+ K+++LQ+ L K
Sbjct: 559 KAKIEELQEVTQKLAEKK 576
|
Length = 579 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 647 bits (1670), Expect = 0.0
Identities = 305/558 (54%), Positives = 385/558 (68%), Gaps = 36/558 (6%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AAK Q NP+NT+F KR IGR + KI VE G
Sbjct: 55 GQAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG-- 92
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R
Sbjct: 93 KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLR 152
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG
Sbjct: 153 LINEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGG 209
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
+DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++
Sbjct: 210 DDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD 269
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
ID +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L+
Sbjct: 270 IDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELV 329
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
+ FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV
Sbjct: 330 KEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVR 384
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
T +IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRG
Sbjct: 385 TPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRG 444
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D+
Sbjct: 445 VPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDK 503
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
+ +E + ARN E+ ++++++AL K++E EK + E + L+ +KEE
Sbjct: 504 KFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEI 558
Query: 2531 QDKLQQLQKSCMPLMSKM 2548
+ K+++LQ+ L K
Sbjct: 559 KAKIEELQEVTQKLAEKK 576
|
Length = 579 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 645 bits (1666), Expect = 0.0
Identities = 304/558 (54%), Positives = 385/558 (68%), Gaps = 36/558 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AAK Q NP+NT+F KR IGR + KI VE G
Sbjct: 55 GQAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG-- 92
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R
Sbjct: 93 KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLR 152
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG
Sbjct: 153 LINEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGG 209
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
+DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++
Sbjct: 210 DDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD 269
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
ID +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L+
Sbjct: 270 IDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELV 329
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 408
+ FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV
Sbjct: 330 KEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVR 384
Query: 409 SKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 468
+ +IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRG
Sbjct: 385 TPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRG 444
Query: 469 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 528
VP+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D+
Sbjct: 445 VPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDK 503
Query: 529 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 588
+ +E + ARN E+ ++++++AL K++E EK + E + L+ +KEE
Sbjct: 504 KFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEI 558
Query: 589 QDKLQQLQKSCMPLMSKM 606
+ K+++LQ+ L K
Sbjct: 559 KAKIEELQEVTQKLAEKK 576
|
Length = 579 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 644 bits (1663), Expect = 0.0
Identities = 304/557 (54%), Positives = 384/557 (68%), Gaps = 36/557 (6%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AAK Q NP+NT+F KR IGR + KI VE G K
Sbjct: 56 QAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--K 93
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R+
Sbjct: 94 KYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRL 153
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG+
Sbjct: 154 INEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGGD 210
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++ I
Sbjct: 211 DFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI 270
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
D +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L++
Sbjct: 271 DLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVK 330
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMT 1778
FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV T
Sbjct: 331 EFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRT 385
Query: 1779 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1838
+IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRGV
Sbjct: 386 PIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGV 445
Query: 1839 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1898
P+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D++
Sbjct: 446 PQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKK 504
Query: 1899 QKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQ 1958
+E + ARN E+ ++++++AL K++E EK + E + L+ +KEE +
Sbjct: 505 FRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEIK 559
Query: 1959 DKLQQLQKSCMPLMSKM 1975
K+++LQ+ L K
Sbjct: 560 AKIEELQEVTQKLAEKK 576
|
Length = 579 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 618 bits (1596), Expect = 0.0
Identities = 295/583 (50%), Positives = 393/583 (67%), Gaps = 21/583 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E
Sbjct: 51 GQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALN 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K F+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 108 KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLR 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG
Sbjct: 168 IINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A
Sbjct: 225 DDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITAT 284
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G ++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +
Sbjct: 285 QTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAI 344
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETL 399
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVMTK+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPP
Sbjct: 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPP 459
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+
Sbjct: 460 APRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNA 518
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
ED+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D
Sbjct: 519 AEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQND 574
Query: 2527 K-EEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPTVEEVD 2568
E + L++LQK+ M + +++ S D V + D
Sbjct: 575 NYESIKSLLEELQKALMEIGKEVYSSTSTTDPASNDDDVIDTD 617
|
Length = 621 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 617 bits (1592), Expect = 0.0
Identities = 291/557 (52%), Positives = 384/557 (68%), Gaps = 21/557 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E
Sbjct: 51 GQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALN 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K F+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 108 KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLR 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG
Sbjct: 168 IINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A
Sbjct: 225 DDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITAT 284
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G ++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +
Sbjct: 285 QTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAI 344
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETL 399
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVMTK+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPP
Sbjct: 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPP 459
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+
Sbjct: 460 APRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNA 518
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
ED+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D
Sbjct: 519 AEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQND 574
Query: 1158 K-EEYQDKLQQLQKSCM 1173
E + L++LQK+ M
Sbjct: 575 NYESIKSLLEELQKALM 591
|
Length = 621 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 615 bits (1589), Expect = 0.0
Identities = 290/554 (52%), Positives = 383/554 (69%), Gaps = 21/554 (3%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E K F
Sbjct: 54 AKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALNKDF 110
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+RI+N
Sbjct: 111 SPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIIN 170
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG+DF
Sbjct: 171 EPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDDF 227
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
D ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A G
Sbjct: 228 DKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTG 287
Query: 1658 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +Q L
Sbjct: 288 PKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQEL 347
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 1776
++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET GGV
Sbjct: 348 VKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGV 402
Query: 1777 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1836
MTK+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPPAPR
Sbjct: 403 MTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPR 462
Query: 1837 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1896
GVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+ ED
Sbjct: 463 GVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAED 521
Query: 1897 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK-E 1955
+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D E
Sbjct: 522 KEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQNDNYE 577
Query: 1956 EYQDKLQQLQKSCM 1969
+ L++LQK+ M
Sbjct: 578 SIKSLLEELQKALM 591
|
Length = 621 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 615 bits (1587), Expect = 0.0
Identities = 290/557 (52%), Positives = 384/557 (68%), Gaps = 21/557 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E
Sbjct: 51 GQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALN 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K F+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 108 KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLR 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG
Sbjct: 168 IINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A
Sbjct: 225 DDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITAT 284
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G ++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +
Sbjct: 285 QTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAI 344
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETL 399
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM+K+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPP
Sbjct: 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPP 459
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+
Sbjct: 460 APRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNA 518
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
ED+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D
Sbjct: 519 AEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQND 574
Query: 585 K-EEYQDKLQQLQKSCM 600
E + L++LQK+ M
Sbjct: 575 NYESIKSLLEELQKALM 591
|
Length = 621 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 603 bits (1556), Expect = 0.0
Identities = 281/580 (48%), Positives = 397/580 (68%), Gaps = 19/580 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++
Sbjct: 90 GIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK 148
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
++P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+R
Sbjct: 149 --YSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLR 206
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGG
Sbjct: 207 IINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGG 263
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
EDFD R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A
Sbjct: 264 EDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITAD 323
Query: 859 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 324 QSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKV 383
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET
Sbjct: 384 SETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETL 438
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGV T+LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPP
Sbjct: 439 GGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPP 498
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK
Sbjct: 499 APRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYK 557
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
++DE++KE + A+N E +++V++ L + +K+++++K +++ L + D
Sbjct: 558 EQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---D 614
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPT 1197
+ +DK +QLQ++ + + + +
Sbjct: 615 VDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNSE 654
|
Length = 663 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 601 bits (1552), Expect = 0.0
Identities = 283/580 (48%), Positives = 401/580 (69%), Gaps = 19/580 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++
Sbjct: 90 GIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK 148
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
++P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+R
Sbjct: 149 --YSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLR 206
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGG
Sbjct: 207 IINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGG 263
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
EDFD R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A
Sbjct: 264 EDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITAD 323
Query: 2228 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 324 QSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKV 383
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET
Sbjct: 384 SETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETL 438
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGV T+LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPP
Sbjct: 439 GGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPP 498
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK
Sbjct: 499 APRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYK 557
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
++DE++KE + A+N E +++V++ L + +K+++++K +++ L + D
Sbjct: 558 EQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---D 614
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPTVEE 2566
+ +DK +QLQ++ + + + ++ + T E
Sbjct: 615 VDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNSE 654
|
Length = 663 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 600 bits (1549), Expect = 0.0
Identities = 280/575 (48%), Positives = 396/575 (68%), Gaps = 19/575 (3%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++ +
Sbjct: 93 AKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK--Y 149
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
+P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+RI+N
Sbjct: 150 SPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIIN 209
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGGEDF
Sbjct: 210 EPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGGEDF 266
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
D R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A G
Sbjct: 267 DQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSG 326
Query: 1658 ID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 327 PKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSET 386
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 1776
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET GGV
Sbjct: 387 VKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGV 441
Query: 1777 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1836
T+LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPPAPR
Sbjct: 442 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPR 501
Query: 1837 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1896
GVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK++D
Sbjct: 502 GVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYKEQD 560
Query: 1897 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 1956
E++KE + A+N E +++V++ L + +K+++++K +++ L + D +
Sbjct: 561 EKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDS 617
Query: 1957 YQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 1991
+DK +QLQ++ + + + +
Sbjct: 618 IKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTN 652
|
Length = 663 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 599 bits (1546), Expect = 0.0
Identities = 280/578 (48%), Positives = 397/578 (68%), Gaps = 19/578 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++
Sbjct: 90 GIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK 148
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
++P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+R
Sbjct: 149 --YSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLR 206
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGG
Sbjct: 207 IINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGG 263
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
EDFD R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A
Sbjct: 264 EDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITAD 323
Query: 286 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 324 QSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKV 383
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET
Sbjct: 384 SETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETL 438
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGV ++LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPP
Sbjct: 439 GGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPP 498
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK
Sbjct: 499 APRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYK 557
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
++DE++KE + A+N E +++V++ L + +K+++++K +++ L + D
Sbjct: 558 EQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---D 614
Query: 585 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 622
+ +DK +QLQ++ + + + +
Sbjct: 615 VDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTN 652
|
Length = 663 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 596 bits (1539), Expect = 0.0
Identities = 278/577 (48%), Positives = 390/577 (67%), Gaps = 23/577 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFK 678
G AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +
Sbjct: 51 GQLAKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIR 104
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 738
G + + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL
Sbjct: 105 G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
V+RI+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ H
Sbjct: 163 VLRIINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNH 220
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 855
LGG+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFI 280
Query: 856 DALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914
A G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRI
Sbjct: 281 TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRI 340
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 974
P VQ +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGI
Sbjct: 341 PAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396
Query: 975 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 1034
ET G V TK+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTG
Sbjct: 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTG 456
Query: 1035 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 1094
IPPAPRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE
Sbjct: 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAE 515
Query: 1095 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 1154
+Y +ED R+K+ I +N ++ +++ + L G ++E K R ++ + L +
Sbjct: 516 KYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPN 575
Query: 1155 LADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM 1191
+ EE + +L++ Q++ + + ++++ G + +
Sbjct: 576 I-SLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTV 611
|
Length = 653 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 596 bits (1538), Expect = 0.0
Identities = 279/580 (48%), Positives = 390/580 (67%), Gaps = 23/580 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFK 2047
G AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +
Sbjct: 51 GQLAKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIR 104
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 2107
G + + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL
Sbjct: 105 G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
V+RI+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ H
Sbjct: 163 VLRIINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNH 220
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 2224
LGG+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFI 280
Query: 2225 DALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 2283
A G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRI
Sbjct: 281 TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRI 340
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 2343
P VQ +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGI
Sbjct: 341 PAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396
Query: 2344 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 2403
ET G V TK+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTG
Sbjct: 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTG 456
Query: 2404 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 2463
IPPAPRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE
Sbjct: 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAE 515
Query: 2464 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 2523
+Y +ED R+K+ I +N ++ +++ + L G ++E K R ++ + L +
Sbjct: 516 KYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPN 575
Query: 2524 LADKEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPT 2563
+ EE + +L++ Q++ + + ++++ + PT
Sbjct: 576 I-SLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPT 614
|
Length = 653 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 280/603 (46%), Positives = 397/603 (65%), Gaps = 31/603 (5%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFKGER 1477
AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +G
Sbjct: 54 AKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIRG-- 105
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
+ + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL V+R
Sbjct: 106 RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLR 165
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
I+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ HLGG
Sbjct: 166 IINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNHLGG 223
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 1654
+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I A
Sbjct: 224 DDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITAD 283
Query: 1655 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 1713
G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRIP V
Sbjct: 284 ETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAV 343
Query: 1714 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 1773
Q +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGIET
Sbjct: 344 QEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETL 399
Query: 1774 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1833
G V TK+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTGIPP
Sbjct: 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPP 459
Query: 1834 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1893
APRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE+Y
Sbjct: 460 APRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYA 518
Query: 1894 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1953
+ED R+K+ I +N ++ +++ + L G ++E K R ++ + L + +
Sbjct: 519 EEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNI-S 577
Query: 1954 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM--------PRGGDAAKNQVAMNPKNT 2005
EE + +L++ Q++ + + ++++ G + + +++ ++ N
Sbjct: 578 LEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPTSDTLITATMNSSNETTLIDEFNF 637
Query: 2006 VFD 2008
FD
Sbjct: 638 DFD 640
|
Length = 653 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 594 bits (1533), Expect = 0.0
Identities = 280/606 (46%), Positives = 398/606 (65%), Gaps = 31/606 (5%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFK 105
G AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +
Sbjct: 51 GQLAKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIR 104
Query: 106 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 165
G + + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL
Sbjct: 105 G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162
Query: 166 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 225
V+RI+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ H
Sbjct: 163 VLRIINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNH 220
Query: 226 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 282
LGG+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFI 280
Query: 283 DALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
A G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRI
Sbjct: 281 TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRI 340
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 401
P VQ +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGI
Sbjct: 341 PAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396
Query: 402 ETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 461
ET G V +K+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTG
Sbjct: 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTG 456
Query: 462 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 521
IPPAPRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE
Sbjct: 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAE 515
Query: 522 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 581
+Y +ED R+K+ I +N ++ +++ + L G ++E K R ++ + L +
Sbjct: 516 KYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPN 575
Query: 582 LADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM--------PRGGDAAKNQVAMNP 633
+ EE + +L++ Q++ + + ++++ G + + +++ ++
Sbjct: 576 I-SLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPTSDTLITATMNSSNETTLIDE 634
Query: 634 KNTVFD 639
N FD
Sbjct: 635 FNFDFD 640
|
Length = 653 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 561 bits (1449), Expect = 0.0
Identities = 218/328 (66%), Positives = 267/328 (81%), Gaps = 2/328 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
GDAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+ VVN KP I+V+ KGE+
Sbjct: 49 GDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEK 108
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 109 KTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVR 168
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID G +FEV +T GDTHLGG
Sbjct: 169 IINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGG 226
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
EDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR LSS + IEI++L+DG
Sbjct: 227 EDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDG 286
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I ++VLVGGSTRIPKVQ LL
Sbjct: 287 EDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLL 346
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAA 376
+ FF GK + INPDEAVAYGAAVQA
Sbjct: 347 KEFFNGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 561 bits (1449), Expect = 0.0
Identities = 218/328 (66%), Positives = 267/328 (81%), Gaps = 2/328 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+ VVN KP I+V+ KGE+
Sbjct: 49 GDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEK 108
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 109 KTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVR 168
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID G +FEV +T GDTHLGG
Sbjct: 169 IINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGG 226
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR LSS + IEI++L+DG
Sbjct: 227 EDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDG 286
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I ++VLVGGSTRIPKVQ LL
Sbjct: 287 EDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLL 346
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAA 949
+ FF GK + INPDEAVAYGAAVQA
Sbjct: 347 KEFFNGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 561 bits (1449), Expect = 0.0
Identities = 218/328 (66%), Positives = 267/328 (81%), Gaps = 2/328 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+ VVN KP I+V+ KGE+
Sbjct: 49 GDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEK 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 109 KTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID G +FEV +T GDTHLGG
Sbjct: 169 IINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGG 226
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR LSS + IEI++L+DG
Sbjct: 227 EDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDG 286
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I ++VLVGGSTRIPKVQ LL
Sbjct: 287 EDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLL 346
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
+ FF GK + INPDEAVAYGAAVQA
Sbjct: 347 KEFFNGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 560 bits (1444), Expect = 0.0
Identities = 222/346 (64%), Positives = 274/346 (79%), Gaps = 5/346 (1%)
Query: 1403 GNKLTESEKSRCREE---CDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT 1459
GN++T S + E DAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+
Sbjct: 31 GNRITPSYVAFTDGERLIGDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYK 90
Query: 1460 VVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDA 1519
VVN KP I+V+ KGE+KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDA
Sbjct: 91 VVNKDGKPYIEVDVKGEKKTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDA 150
Query: 1520 QRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID 1579
QRQATKDAG IAGLNV+RI+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID
Sbjct: 151 QRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTID 209
Query: 1580 EGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR 1639
G +FEV +T GDTHLGGEDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR
Sbjct: 210 NG-VFEVLATNGDTHLGGEDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKR 268
Query: 1640 TLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIH 1699
LSS + IEI++L+DG DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I
Sbjct: 269 ALSSQHQTRIEIESLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDID 328
Query: 1700 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
++VLVGGSTRIPKVQ LL+ FF GK + INPDEAVAYGAAVQA
Sbjct: 329 EIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 569 bits (1469), Expect = e-180
Identities = 260/553 (47%), Positives = 364/553 (65%), Gaps = 20/553 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++
Sbjct: 51 GQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLE 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
+ FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V R
Sbjct: 108 REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVER 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 168 ILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDAL 285
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 225 NDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITAT 284
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P V
Sbjct: 285 EDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETI 399
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPP
Sbjct: 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPP 459
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE
Sbjct: 460 APRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKA 518
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNN 580
DED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 519 DEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD 578
Query: 581 TLADKEEYQDKLQ 593
+ + LQ
Sbjct: 579 DDRELDLAVADLQ 591
|
Length = 668 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 569 bits (1468), Expect = e-180
Identities = 260/553 (47%), Positives = 364/553 (65%), Gaps = 20/553 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++
Sbjct: 51 GQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLE 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
+ FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V R
Sbjct: 108 REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVER 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 168 ILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDAL 858
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 225 NDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITAT 284
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P V
Sbjct: 285 EDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETI 399
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPP
Sbjct: 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPP 459
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE
Sbjct: 460 APRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKA 518
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNN 1153
DED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 519 DEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD 578
Query: 1154 TLADKEEYQDKLQ 1166
+ + LQ
Sbjct: 579 DDRELDLAVADLQ 591
|
Length = 668 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 569 bits (1468), Expect = e-180
Identities = 260/553 (47%), Positives = 364/553 (65%), Gaps = 20/553 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++
Sbjct: 51 GQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLE 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
+ FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V R
Sbjct: 108 REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVER 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 168 ILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDAL 2227
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 225 NDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITAT 284
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P V
Sbjct: 285 EDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETI 399
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPP
Sbjct: 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPP 459
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE
Sbjct: 460 APRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKA 518
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNN 2522
DED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 519 DEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD 578
Query: 2523 TLADKEEYQDKLQ 2535
+ + LQ
Sbjct: 579 DDRELDLAVADLQ 591
|
Length = 668 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 566 bits (1462), Expect = e-179
Identities = 259/552 (46%), Positives = 363/552 (65%), Gaps = 20/552 (3%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++ +
Sbjct: 52 QLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLER 108
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V RI
Sbjct: 109 EFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERI 168
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 169 LNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGGN 225
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDALY 1655
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 226 DFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATE 285
Query: 1656 DG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P VQ
Sbjct: 286 DGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQ 345
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET G
Sbjct: 346 QLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIG 400
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPPA
Sbjct: 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPA 460
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE D
Sbjct: 461 PRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKAD 519
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNNT 1950
ED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 520 EDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDD 579
Query: 1951 LADKEEYQDKLQ 1962
+ + LQ
Sbjct: 580 DRELDLAVADLQ 591
|
Length = 668 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 554 bits (1430), Expect = e-175
Identities = 276/581 (47%), Positives = 379/581 (65%), Gaps = 25/581 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++
Sbjct: 88 GQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIG 144
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K FA EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+R
Sbjct: 145 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLR 204
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG
Sbjct: 205 IINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGG 261
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A
Sbjct: 262 DDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITAT 321
Query: 859 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 915
DG ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP
Sbjct: 322 ADGPKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIP 379
Query: 916 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 975
VQ L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+E
Sbjct: 380 AVQELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLE 434
Query: 976 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 1035
T GGVMTK+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GI
Sbjct: 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 494
Query: 1036 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 1095
PPAPRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE+
Sbjct: 495 PPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEK 553
Query: 1096 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 1155
+ ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIA 609
Query: 1156 ADK-EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 1195
+ ++ +D + L + M + ++ G AG P G
Sbjct: 610 SGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGE 650
|
Length = 673 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 554 bits (1429), Expect = e-175
Identities = 278/597 (46%), Positives = 385/597 (64%), Gaps = 26/597 (4%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++ K F
Sbjct: 91 AKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIGKQF 147
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
A EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+RI+N
Sbjct: 148 AAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIIN 207
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG+DF
Sbjct: 208 EPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGGDDF 264
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
D R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A DG
Sbjct: 265 DKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADG 324
Query: 1658 ---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP VQ
Sbjct: 325 PKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQ 382
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+ET G
Sbjct: 383 ELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLETLG 437
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVMTK+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GIPPA
Sbjct: 438 GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 497
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE++
Sbjct: 498 PRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAK 556
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L + +
Sbjct: 557 EDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIASGS 612
Query: 1955 -EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQVAMNPK-NTVFDA 2009
++ +D + L + M + ++ G AG P G + + + + V DA
Sbjct: 613 TQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDA 669
|
Length = 673 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 553 bits (1427), Expect = e-175
Identities = 278/600 (46%), Positives = 386/600 (64%), Gaps = 26/600 (4%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++
Sbjct: 88 GQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIG 144
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K FA EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+R
Sbjct: 145 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLR 204
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG
Sbjct: 205 IINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGG 261
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A
Sbjct: 262 DDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITAT 321
Query: 286 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 342
DG ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP
Sbjct: 322 ADGPKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIP 379
Query: 343 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 402
VQ L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+E
Sbjct: 380 AVQELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLE 434
Query: 403 TAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 462
T GGVM+K+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GI
Sbjct: 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 494
Query: 463 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 522
PPAPRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE+
Sbjct: 495 PPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEK 553
Query: 523 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 582
+ ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIA 609
Query: 583 ADK-EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQVAMNPK-NTVFDA 640
+ ++ +D + L + M + ++ G AG P G + + + + V DA
Sbjct: 610 SGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDA 669
|
Length = 673 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 549 bits (1415), Expect = e-173
Identities = 275/580 (47%), Positives = 378/580 (65%), Gaps = 27/580 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++
Sbjct: 88 GQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIG 144
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FA EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+R
Sbjct: 145 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLR 204
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG
Sbjct: 205 IINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGG 261
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A
Sbjct: 262 DDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITAT 321
Query: 2228 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 2284
DG ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP
Sbjct: 322 ADGPKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIP 379
Query: 2285 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 2344
VQ L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+E
Sbjct: 380 AVQELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLE 434
Query: 2345 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 2404
T GGVMTK+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GI
Sbjct: 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 494
Query: 2405 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 2464
PPAPRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE+
Sbjct: 495 PPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEK 553
Query: 2465 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 2524
+ ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIA 609
Query: 2525 ADK-EEYQDKLQQLQKSCMPLMSKMH--GGASAGDMPRGG 2561
+ ++ +D + L + M + ++ GA GG
Sbjct: 610 SGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGG 649
|
Length = 673 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 501 bits (1290), Expect = e-156
Identities = 275/582 (47%), Positives = 385/582 (66%), Gaps = 17/582 (2%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKT 1479
AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G K
Sbjct: 77 AAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DGNGKQ 134
Query: 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 1539
++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R+V
Sbjct: 135 YSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVV 194
Query: 1540 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGED 1599
NEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHLGGED
Sbjct: 195 NEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGGED 251
Query: 1600 FDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYD 1656
FD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I A D
Sbjct: 252 FDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANAD 311
Query: 1657 GID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
G ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+PKV
Sbjct: 312 GAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVE 371
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 1775
++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET GG
Sbjct: 372 EVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGG 426
Query: 1776 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1835
V T++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPPAP
Sbjct: 427 VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAP 486
Query: 1836 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1895
RGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++ +
Sbjct: 487 RGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEA 545
Query: 1896 DERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKE 1955
D ++E + RNN E + ++ L ++++EK + K ++N +A K+
Sbjct: 546 DRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNVA-KD 603
Query: 1956 EYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQ 1997
+ +LQK+ M + A A++G G+ + Q
Sbjct: 604 DLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQ 645
|
Length = 657 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 500 bits (1289), Expect = e-156
Identities = 275/586 (46%), Positives = 386/586 (65%), Gaps = 17/586 (2%)
Query: 47 FTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKG 106
G AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G
Sbjct: 73 LVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DG 130
Query: 107 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
K ++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV
Sbjct: 131 NGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNV 190
Query: 167 MRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 226
+R+VNEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHL
Sbjct: 191 IRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHL 247
Query: 227 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---ID 283
GGEDFD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I
Sbjct: 248 GGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFIT 307
Query: 284 ALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 342
A DG ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+P
Sbjct: 308 ANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMP 367
Query: 343 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 402
KV ++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIE
Sbjct: 368 KVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIE 422
Query: 403 TAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 462
T GGV +++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GI
Sbjct: 423 TLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGI 482
Query: 463 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 522
PPAPRGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E+
Sbjct: 483 PPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQ 541
Query: 523 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 582
+ + D ++E + RNN E + ++ L ++++EK + K ++N +
Sbjct: 542 HAEADRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNV 600
Query: 583 ADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQ 628
A K++ +LQK+ M + A A++G G+ + Q
Sbjct: 601 A-KDDLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQ 645
|
Length = 657 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 499 bits (1286), Expect = e-156
Identities = 274/573 (47%), Positives = 382/573 (66%), Gaps = 17/573 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G
Sbjct: 75 GLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DGNG 132
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 133 KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIR 192
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
+VNEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHLGG
Sbjct: 193 VVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGG 249
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
EDFD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I A
Sbjct: 250 EDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITAN 309
Query: 859 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
DG ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+PKV
Sbjct: 310 ADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKV 369
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET
Sbjct: 370 VEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETL 424
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGV T++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPP
Sbjct: 425 GGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPP 484
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++
Sbjct: 485 APRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHA 543
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
+ D ++E + RNN E + ++ L ++++EK + K ++N +A
Sbjct: 544 EADRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNVA- 601
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGD 1190
K++ +LQK+ M + A A++G
Sbjct: 602 KDDLAAATDKLQKAVMECGRTEYQQAAAANSGS 634
|
Length = 657 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 498 bits (1283), Expect = e-155
Identities = 271/556 (48%), Positives = 376/556 (67%), Gaps = 17/556 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G
Sbjct: 75 GLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DGNG 132
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 133 KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIR 192
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
+VNEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHLGG
Sbjct: 193 VVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGG 249
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
EDFD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I A
Sbjct: 250 EDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITAN 309
Query: 2228 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
DG ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+PKV
Sbjct: 310 ADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKV 369
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET
Sbjct: 370 VEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETL 424
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGV T++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPP
Sbjct: 425 GGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPP 484
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++
Sbjct: 485 APRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHA 543
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
+ D ++E + RNN E + ++ L ++++EK + K ++N +A
Sbjct: 544 EADRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNVA- 601
Query: 2527 KEEYQDKLQQLQKSCM 2542
K++ +LQK+ M
Sbjct: 602 KDDLAAATDKLQKAVM 617
|
Length = 657 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-153
Identities = 220/521 (42%), Positives = 322/521 (61%), Gaps = 32/521 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGE 107
G A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G
Sbjct: 67 GYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL 123
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
K+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+
Sbjct: 124 -KS--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVL 180
Query: 168 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
R++NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LG
Sbjct: 181 RLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALG 237
Query: 228 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 287
G+DFD+ L + E+ + D P R L AA AK LS + + + AL+
Sbjct: 238 GDDFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 288 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 347
G I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+
Sbjct: 293 GE-----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 348 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 407
+ FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 408 MSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 467
+ K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 468 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 527
G +I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 528 ERQK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 564
+ + +++ A LEA ++ AL G+ L+ +E++
Sbjct: 524 MQARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
|
Length = 616 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 488 bits (1258), Expect = e-152
Identities = 220/521 (42%), Positives = 322/521 (61%), Gaps = 32/521 (6%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGE 680
G A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G
Sbjct: 67 GYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL 123
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
K+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+
Sbjct: 124 -KS--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVL 180
Query: 741 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
R++NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LG
Sbjct: 181 RLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALG 237
Query: 801 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 860
G+DFD+ L + E+ + D P R L AA AK LS + + + AL+
Sbjct: 238 GDDFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 861 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 920
G I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+
Sbjct: 293 GE-----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 921 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 980
+ FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 981 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1040
+ K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 1041 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1100
G +I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 1101 ERQK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 1137
+ + +++ A LEA ++ AL G+ L+ +E++
Sbjct: 524 MQARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
|
Length = 616 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 488 bits (1258), Expect = e-152
Identities = 220/521 (42%), Positives = 322/521 (61%), Gaps = 32/521 (6%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGE 2049
G A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G
Sbjct: 67 GYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL 123
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
K+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+
Sbjct: 124 -KS--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVL 180
Query: 2110 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
R++NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LG
Sbjct: 181 RLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALG 237
Query: 2170 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 2229
G+DFD+ L + E+ + D P R L AA AK LS + + + AL+
Sbjct: 238 GDDFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 2230 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 2289
G I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+
Sbjct: 293 GE-----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 2290 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 2349
+ FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 2350 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 2409
+ K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 2410 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 2469
G +I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 2470 ERQK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 2506
+ + +++ A LEA ++ AL G+ L+ +E++
Sbjct: 524 MQARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
|
Length = 616 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 485 bits (1252), Expect = e-152
Identities = 219/519 (42%), Positives = 321/519 (61%), Gaps = 32/519 (6%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGERK 1478
A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G K
Sbjct: 69 EARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL-K 124
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R+
Sbjct: 125 S--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRL 182
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LGG+
Sbjct: 183 LNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALGGD 239
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFD+ L + E+ + D P R L AA AK LS + + + AL+ G
Sbjct: 240 DFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQGE 294
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+ +
Sbjct: 295 -----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVG 349
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMT 1778
FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG++
Sbjct: 350 EFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVE 406
Query: 1779 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1838
K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP G
Sbjct: 407 KIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGA 466
Query: 1839 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1898
+I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED +
Sbjct: 467 ARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEEDMQ 525
Query: 1899 QK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 1933
+ +++ A LEA ++ AL G+ L+ +E++
Sbjct: 526 ARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
|
Length = 616 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 483 bits (1245), Expect = e-151
Identities = 231/522 (44%), Positives = 318/522 (60%), Gaps = 33/522 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 48 GKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQ 101
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGG 218
Query: 229 EDFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 285
+DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 219 DDFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFT 269
Query: 286 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 345
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 270 LDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329
Query: 346 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 405
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET G
Sbjct: 330 RAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMG 386
Query: 406 GVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 465
G++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPM 446
Query: 466 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 525
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +
Sbjct: 447 VAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAE 505
Query: 526 ED----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 563
ED ++++ A LEA ++ AL G+ L+E E+
Sbjct: 506 EDMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 483 bits (1245), Expect = e-151
Identities = 231/522 (44%), Positives = 318/522 (60%), Gaps = 33/522 (6%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 48 GKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQ 101
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGG 218
Query: 802 EDFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 858
+DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 219 DDFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFT 269
Query: 859 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 918
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 270 LDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329
Query: 919 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 978
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET G
Sbjct: 330 RAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMG 386
Query: 979 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1038
G++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPM 446
Query: 1039 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1098
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +
Sbjct: 447 VAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAE 505
Query: 1099 ED----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1136
ED ++++ A LEA ++ AL G+ L+E E+
Sbjct: 506 EDMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 483 bits (1245), Expect = e-151
Identities = 231/522 (44%), Positives = 318/522 (60%), Gaps = 33/522 (6%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 48 GKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQ 101
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGG 218
Query: 2171 EDFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 2227
+DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 219 DDFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFT 269
Query: 2228 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 2287
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 270 LDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329
Query: 2288 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 2347
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET G
Sbjct: 330 RAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMG 386
Query: 2348 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 2407
G++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPM 446
Query: 2408 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 2467
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +
Sbjct: 447 VAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAE 505
Query: 2468 ED----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 2505
ED ++++ A LEA ++ AL G+ L+E E+
Sbjct: 506 EDMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 480 bits (1238), Expect = e-150
Identities = 230/521 (44%), Positives = 317/521 (60%), Gaps = 33/521 (6%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 49 KEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQG 102
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R+
Sbjct: 103 TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRL 162
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG+
Sbjct: 163 LNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGGD 219
Query: 1599 DFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 1655
DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 220 DFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFTL 270
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 271 DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRR 330
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 1775
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET GG
Sbjct: 331 AVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMGG 387
Query: 1776 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1835
++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMV 447
Query: 1836 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1895
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +E
Sbjct: 448 AGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEE 506
Query: 1896 D----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1932
D ++++ A LEA ++ AL G+ L+E E+
Sbjct: 507 DMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 452 bits (1164), Expect = e-143
Identities = 183/338 (54%), Positives = 230/338 (68%), Gaps = 6/338 (1%)
Query: 39 SLTNPLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKP 98
G+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P
Sbjct: 38 YFDGDGEVLVGEAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAP 93
Query: 99 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 158
I V + K ++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A
Sbjct: 94 IIPVPVELGGKKYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEA 153
Query: 159 GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR 218
IAGLNV+R++NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV
Sbjct: 154 AEIAGLNVVRLINEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVL 212
Query: 219 STAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEA 278
+T GD HLGG+DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA
Sbjct: 213 ATGGDNHLGGDDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEA 272
Query: 279 SIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS 338
+I + L G D +++R FEEL L T+ VE+ L DA L I V+LVGGS
Sbjct: 273 TITLPGLGSGGDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGS 332
Query: 339 TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
+RIP V+ LL+ F GK SI+PDEAVA GAA+ AA
Sbjct: 333 SRIPLVRELLEELF-GKKPLRSIDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 451 bits (1163), Expect = e-143
Identities = 183/328 (55%), Positives = 230/328 (70%), Gaps = 6/328 (1%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P I V +
Sbjct: 48 GEAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGG 103
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R
Sbjct: 104 KKYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVR 163
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV +T GD HLGG
Sbjct: 164 LINEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGG 222
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
+DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA+I + L G
Sbjct: 223 DDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSG 282
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
D +++R FEEL L T+ VE+ L DA L I V+LVGGS+RIP V+ LL
Sbjct: 283 GDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELL 342
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAA 949
+ F GK SI+PDEAVA GAA+ AA
Sbjct: 343 EELF-GKKPLRSIDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 451 bits (1163), Expect = e-143
Identities = 183/328 (55%), Positives = 230/328 (70%), Gaps = 6/328 (1%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P I V +
Sbjct: 48 GEAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGG 103
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R
Sbjct: 104 KKYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVR 163
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV +T GD HLGG
Sbjct: 164 LINEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGG 222
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
+DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA+I + L G
Sbjct: 223 DDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSG 282
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
D +++R FEEL L T+ VE+ L DA L I V+LVGGS+RIP V+ LL
Sbjct: 283 GDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELL 342
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
+ F GK SI+PDEAVA GAA+ AA
Sbjct: 343 EELF-GKKPLRSIDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 448 bits (1156), Expect = e-142
Identities = 182/327 (55%), Positives = 229/327 (70%), Gaps = 6/327 (1%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P I V + K
Sbjct: 49 EAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGGK 104
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R+
Sbjct: 105 KYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRL 164
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV +T GD HLGG+
Sbjct: 165 INEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGGD 223
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA+I + L G
Sbjct: 224 DFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGG 283
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
D +++R FEEL L T+ VE+ L DA L I V+LVGGS+RIP V+ LL+
Sbjct: 284 DLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLE 343
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAA 1745
F GK SI+PDEAVA GAA+ AA
Sbjct: 344 ELF-GKKPLRSIDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-142
Identities = 182/336 (54%), Positives = 234/336 (69%), Gaps = 16/336 (4%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNG 106
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 107 KDYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLR 166
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 167 IINEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 286 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 342
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 284 ATGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIP 341
Query: 343 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 342 AVQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-142
Identities = 182/336 (54%), Positives = 234/336 (69%), Gaps = 16/336 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNG 106
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 107 KDYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLR 166
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 167 IINEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 859 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 915
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 284 ATGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIP 341
Query: 916 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 342 AVQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-142
Identities = 182/336 (54%), Positives = 234/336 (69%), Gaps = 16/336 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNG 106
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 107 KDYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLR 166
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 167 IINEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 2228 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 2284
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 284 ATGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIP 341
Query: 2285 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 2320
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 342 AVQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 446 bits (1150), Expect = e-141
Identities = 181/335 (54%), Positives = 233/335 (69%), Gaps = 16/335 (4%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE K
Sbjct: 52 QPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNGK 107
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+RI
Sbjct: 108 DYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRI 167
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG+
Sbjct: 168 INEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGGD 224
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALY 1655
DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 225 DFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADA 284
Query: 1656 DG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 285 TGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPA 342
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1747
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 343 VQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 420 bits (1082), Expect = e-132
Identities = 184/334 (55%), Positives = 242/334 (72%), Gaps = 11/334 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G
Sbjct: 51 GMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG-- 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K ++P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 108 KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLR 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGG
Sbjct: 168 VINEPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
EDFDN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A
Sbjct: 225 EDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITAD 284
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKV
Sbjct: 285 ASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKV 344
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378
Q ++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 345 QETVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 420 bits (1082), Expect = e-132
Identities = 184/334 (55%), Positives = 242/334 (72%), Gaps = 11/334 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G
Sbjct: 51 GMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG-- 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 108 KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLR 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGG
Sbjct: 168 VINEPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
EDFDN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A
Sbjct: 225 EDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITAD 284
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKV
Sbjct: 285 ASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKV 344
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951
Q ++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 345 QETVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 420 bits (1082), Expect = e-132
Identities = 184/334 (55%), Positives = 242/334 (72%), Gaps = 11/334 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G
Sbjct: 51 GMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG-- 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 108 KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLR 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGG
Sbjct: 168 VINEPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
EDFDN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A
Sbjct: 225 EDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITAD 284
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKV
Sbjct: 285 ASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKV 344
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 2320
Q ++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 345 QETVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 419 bits (1079), Expect = e-132
Identities = 183/331 (55%), Positives = 241/331 (72%), Gaps = 11/331 (3%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G K +
Sbjct: 54 AKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG--KKY 110
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
+P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R++N
Sbjct: 111 SPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVIN 170
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGGEDF
Sbjct: 171 EPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGGEDF 227
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
DN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A G
Sbjct: 228 DNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASG 287
Query: 1658 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKVQ
Sbjct: 288 PKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQET 347
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1747
++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 348 VKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 387 bits (996), Expect = e-121
Identities = 173/330 (52%), Positives = 240/330 (72%), Gaps = 6/330 (1%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G+AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G
Sbjct: 50 GEAAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG-- 106
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K ++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+R
Sbjct: 107 KKYSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLR 166
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGG
Sbjct: 167 IINEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
EDFDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 225 EDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGP 284
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++
Sbjct: 285 KHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVV 344
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378
Q F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 345 QEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 387 bits (996), Expect = e-121
Identities = 173/330 (52%), Positives = 240/330 (72%), Gaps = 6/330 (1%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G+AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G
Sbjct: 50 GEAAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG-- 106
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+R
Sbjct: 107 KKYSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLR 166
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGG
Sbjct: 167 IINEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 225 EDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGP 284
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++
Sbjct: 285 KHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVV 344
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951
Q F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 345 QEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 387 bits (996), Expect = e-121
Identities = 173/330 (52%), Positives = 240/330 (72%), Gaps = 6/330 (1%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G+AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G
Sbjct: 50 GEAAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG-- 106
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+R
Sbjct: 107 KKYSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLR 166
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGG
Sbjct: 167 IINEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 225 EDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGP 284
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++
Sbjct: 285 KHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVV 344
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAIL 2320
Q F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 345 QEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 385 bits (991), Expect = e-120
Identities = 172/328 (52%), Positives = 238/328 (72%), Gaps = 6/328 (1%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKT 1479
AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G K
Sbjct: 52 AAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG--KK 108
Query: 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 1539
++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+RI+
Sbjct: 109 YSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRII 168
Query: 1540 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGED 1599
NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGGED
Sbjct: 169 NEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGGED 226
Query: 1600 FDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGID 1659
FDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 227 FDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKH 286
Query: 1660 FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQN 1719
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++Q
Sbjct: 287 LRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQE 346
Query: 1720 FFCGKSLNLSINPDEAVAYGAAVQAAIL 1747
F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 347 IF-GKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 386 bits (994), Expect = e-120
Identities = 170/338 (50%), Positives = 222/338 (65%), Gaps = 7/338 (2%)
Query: 47 FTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKPKIQVEFK 105
G+AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K I+V +
Sbjct: 46 LIGEAAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYL 105
Query: 106 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 165
GE K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN
Sbjct: 106 GEEKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLN 165
Query: 166 VMRIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
+R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L +V STA
Sbjct: 166 CLRLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTA 224
Query: 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE 281
D +LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS++TEA +
Sbjct: 225 FDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLN 284
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
I+ L + D KI R FEELC+ L +P+EKAL +A L K IH V +VGGSTRI
Sbjct: 285 IECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRI 344
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
P V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 345 PAVKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-120
Identities = 170/336 (50%), Positives = 222/336 (66%), Gaps = 7/336 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKPKIQVEFKGE 680
G+AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K I+V + GE
Sbjct: 48 GEAAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGE 107
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN +
Sbjct: 108 EKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCL 167
Query: 741 RIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 796
R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L +V STA D
Sbjct: 168 RLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTAFD 226
Query: 797 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 856
+LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS++TEA + I+
Sbjct: 227 RNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIE 286
Query: 857 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 916
L + D KI R FEELC+ L +P+EKAL +A L K IH V +VGGSTRIP
Sbjct: 287 CLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPA 346
Query: 917 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 347 VKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-120
Identities = 170/336 (50%), Positives = 222/336 (66%), Gaps = 7/336 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKPKIQVEFKGE 2049
G+AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K I+V + GE
Sbjct: 48 GEAAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGE 107
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN +
Sbjct: 108 EKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCL 167
Query: 2110 RIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 2165
R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L +V STA D
Sbjct: 168 RLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTAFD 226
Query: 2166 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 2225
+LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS++TEA + I+
Sbjct: 227 RNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIE 286
Query: 2226 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 2285
L + D KI R FEELC+ L +P+EKAL +A L K IH V +VGGSTRIP
Sbjct: 287 CLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPA 346
Query: 2286 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 347 VKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 383 bits (987), Expect = e-119
Identities = 173/345 (50%), Positives = 224/345 (64%), Gaps = 9/345 (2%)
Query: 1409 SEKSRCREECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKP 1467
EK R E AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K
Sbjct: 41 GEKQRLIGE--AAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKV 98
Query: 1468 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 1527
I+V + GE K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA
Sbjct: 99 GIKVNYLGEEKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDA 158
Query: 1528 GAIAGLNVMRIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGAL 1583
IAGLN +R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L
Sbjct: 159 AQIAGLNCLRLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL 218
Query: 1584 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 1643
+V STA D +LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS+
Sbjct: 219 -KVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSA 277
Query: 1644 STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVL 1703
+TEA + I+ L + D KI R FEELC+ L +P+EKAL +A L K IH V +
Sbjct: 278 NTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEI 337
Query: 1704 VGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
VGGSTRIP V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 338 VGGSTRIPAVKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (956), Expect = e-112
Identities = 158/237 (66%), Positives = 191/237 (80%), Gaps = 7/237 (2%)
Query: 1197 TNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 1256
+FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGGVM
Sbjct: 353 KDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVM 412
Query: 1257 SKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1316
+KLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAPRG
Sbjct: 413 TKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRG 472
Query: 1317 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1376
VP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK EDE
Sbjct: 473 VPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDE 532
Query: 1377 RQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDAA-----KNQVA 1426
+ER+ A+N LE Y +++K L + KL++S+K+ + D A KNQ+A
Sbjct: 533 ANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLA 589
|
Length = 653 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 353 bits (908), Expect = e-106
Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 16/239 (6%)
Query: 1194 GGPT----------NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 1243
GG T FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVT
Sbjct: 334 GGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVT 388
Query: 1244 PLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLG 1303
PLSLGIET GGVM+KLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG
Sbjct: 389 PLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLG 448
Query: 1304 TFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDR 1363
F+LTGIPPAPRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+R
Sbjct: 449 RFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIER 507
Query: 1364 MINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAK 1422
M+ DAE +ED+++KE + ARN ++ ++ ++ L G+K+ EK + K
Sbjct: 508 MVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELK 566
|
Length = 627 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 103 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 162
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 163 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 222
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 223 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 281
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 676 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 735
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 736 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 795
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 796 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 854
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 855 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 1472 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 1531
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 1532 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 1591
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 1592 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 1650
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 1651 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 1710
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 1711 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 2045 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 2104
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 2105 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 2164
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 2165 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 2223
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 2224 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 2283
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-102
Identities = 148/330 (44%), Positives = 194/330 (58%), Gaps = 20/330 (6%)
Query: 619 PRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK 678
G A +PKNT+ KRL+G+ +D I++ + P + + F
Sbjct: 45 ISVGHDALKLAISDPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFH 98
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 738
++ T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLN
Sbjct: 99 TQQGTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLN 158
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
V+R++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+
Sbjct: 159 VLRLLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSA 215
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 858
LGG+DFD L L +KY ++ L A +AK LS + E +E
Sbjct: 216 LGGDDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE---- 265
Query: 859 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 918
G DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ
Sbjct: 266 VRGQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQ 325
Query: 919 SLLQNFFCGKSLNLSINPDEAVAYGAAVQA 948
+ FF K L INPDE VA GAA+QA
Sbjct: 326 EAVSKFFGQKPLC-DINPDEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-102
Identities = 148/330 (44%), Positives = 194/330 (58%), Gaps = 20/330 (6%)
Query: 1988 PRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK 2047
G A +PKNT+ KRL+G+ +D I++ + P + + F
Sbjct: 45 ISVGHDALKLAISDPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFH 98
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 2107
++ T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLN
Sbjct: 99 TQQGTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLN 158
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
V+R++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+
Sbjct: 159 VLRLLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSA 215
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 2227
LGG+DFD L L +KY ++ L A +AK LS + E +E
Sbjct: 216 LGGDDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE---- 265
Query: 2228 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 2287
G DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ
Sbjct: 266 VRGQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQ 325
Query: 2288 SLLQNFFCGKSLNLSINPDEAVAYGAAVQA 2317
+ FF K L INPDE VA GAA+QA
Sbjct: 326 EAVSKFFGQKPLC-DINPDEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 333 bits (855), Expect = e-102
Identities = 148/327 (45%), Positives = 194/327 (59%), Gaps = 20/327 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G A +PKNT+ KRL+G+ +D I++ + P + + F ++
Sbjct: 48 GHDALKLAISDPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFHTQQ 101
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSALGG 218
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
+DFD L L +KY ++ L A +AK LS + E +E G
Sbjct: 219 DDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE----VRG 268
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ +
Sbjct: 269 QDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAV 328
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQA 375
FF K L INPDE VA GAA+QA
Sbjct: 329 SKFFGQKPLC-DINPDEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 331 bits (852), Expect = e-102
Identities = 149/327 (45%), Positives = 197/327 (60%), Gaps = 21/327 (6%)
Query: 1418 CDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 1477
DA K ++ +PKNT+ KRL+G+ +D I++ + P + + F ++
Sbjct: 49 HDALKLAIS-DPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFHTQQ 101
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSALGG 218
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 1657
+DFD L L +KY ++ L A +AK LS + E +E G
Sbjct: 219 DDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE----VRG 268
Query: 1658 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 1717
DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ +
Sbjct: 269 QDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAV 328
Query: 1718 QNFFCGKSLNLSINPDEAVAYGAAVQA 1744
FF K L INPDE VA GAA+QA
Sbjct: 329 SKFFGQKPLC-DINPDEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-101
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 2/329 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + +
Sbjct: 48 GLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKT 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K +P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+R
Sbjct: 108 KHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLR 167
Query: 169 IVNEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
I++EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LG
Sbjct: 168 IIHEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLG 226
Query: 228 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 287
GE F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+
Sbjct: 227 GESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYE 286
Query: 288 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 347
GIDF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L
Sbjct: 287 GIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 348 LQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
+++ F + SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-101
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 2/329 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + +
Sbjct: 48 GLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKT 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K +P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+R
Sbjct: 108 KHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLR 167
Query: 742 IVNEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
I++EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LG
Sbjct: 168 IIHEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLG 226
Query: 801 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 860
GE F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+
Sbjct: 227 GESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYE 286
Query: 861 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 920
GIDF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L
Sbjct: 287 GIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 921 LQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
+++ F + SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-101
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 2/329 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + +
Sbjct: 48 GLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKT 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K +P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+R
Sbjct: 108 KHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLR 167
Query: 2111 IVNEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
I++EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LG
Sbjct: 168 IIHEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLG 226
Query: 2170 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 2229
GE F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+
Sbjct: 227 GESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYE 286
Query: 2230 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 2289
GIDF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L
Sbjct: 287 GIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 2290 LQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
+++ F + SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-101
Identities = 141/327 (43%), Positives = 215/327 (65%), Gaps = 2/327 (0%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKT 1479
AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + + K
Sbjct: 50 AAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKH 109
Query: 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 1539
+P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+RI+
Sbjct: 110 VSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRII 169
Query: 1540 NEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LGGE
Sbjct: 170 HEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLGGE 228
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+GI
Sbjct: 229 SFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGI 288
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
DF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L++
Sbjct: 289 DFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIK 348
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAA 1745
+ F + SI+PDE +A GAA QA
Sbjct: 349 DLFPSVEVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 330 bits (849), Expect = 2e-98
Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET GGVM+
Sbjct: 347 EFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLGGVMT 403
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
KLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPAPRGV
Sbjct: 404 KLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGV 463
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1377
P+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y ED++
Sbjct: 464 PQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKK 522
Query: 1378 QKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 1416
+KERI A+N E YV++++++L G+KL E++K + E
Sbjct: 523 RKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEE 561
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 325 bits (834), Expect = 2e-96
Identities = 128/224 (57%), Positives = 163/224 (72%), Gaps = 5/224 (2%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
F GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET GGVM+KL
Sbjct: 347 FFGKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKL 402
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
IERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPPAPRGVP+
Sbjct: 403 IERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQ 462
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE +ED+++K
Sbjct: 463 IEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKKRK 521
Query: 1380 ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKN 1423
E I ARNN ++ + ++ L AG+KL EK + + K
Sbjct: 522 EEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKE 565
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 317 bits (813), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 68 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 123
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 124 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 183
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 244 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 303
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 304 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 363
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 364 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQT 423
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 424 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 483
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 484 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 543
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 544 VFNVKQALDNAGNKLTESEKS 564
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
|
Length = 595 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 641 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 696
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 697 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 756
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 757 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 816
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 817 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 876
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 877 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 936
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 937 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQT 996
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 997 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 1056
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 1057 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 1116
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 1117 VFNVKQALDNAGNKLTESEKS 1137
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
|
Length = 595 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 1437 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 1492
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 1493 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 1552
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 1553 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 1672
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 1673 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 1732
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 1733 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQT 1792
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 1793 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 1852
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 1853 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 1912
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 1913 VFNVKQALDNAGNKLTESEKS 1933
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
|
Length = 595 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 2010 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 2065
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 2066 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 2125
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 2126 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 2185
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 2186 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 2245
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 2246 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 2305
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 2306 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQT 2365
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 2366 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 2425
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 2426 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 2485
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 2486 VFNVKQALDNAGNKLTESEKS 2506
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
|
Length = 595 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = 1e-92
Identities = 138/343 (40%), Positives = 192/343 (55%), Gaps = 16/343 (4%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGE 107
G A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 47 GSDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG 106
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV
Sbjct: 107 -EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNV 165
Query: 167 MRIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-F 215
+ +VN+ TAAAL Y LD+ + + VL +D+G G+ +++ +
Sbjct: 166 LALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQI 225
Query: 216 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLS 273
EV D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS
Sbjct: 226 EVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLS 285
Query: 274 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 333
+++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V
Sbjct: 286 ANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVE 345
Query: 334 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
L+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 346 LIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = 1e-92
Identities = 138/343 (40%), Positives = 192/343 (55%), Gaps = 16/343 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGE 680
G A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 47 GSDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG 106
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 739
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV
Sbjct: 107 -EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNV 165
Query: 740 MRIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-F 788
+ +VN+ TAAAL Y LD+ + + VL +D+G G+ +++ +
Sbjct: 166 LALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQI 225
Query: 789 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLS 846
EV D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS
Sbjct: 226 EVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLS 285
Query: 847 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 906
+++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V
Sbjct: 286 ANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVE 345
Query: 907 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
L+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 346 LIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = 1e-92
Identities = 138/343 (40%), Positives = 192/343 (55%), Gaps = 16/343 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGE 2049
G A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 47 GSDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG 106
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 2108
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV
Sbjct: 107 -EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNV 165
Query: 2109 MRIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-F 2157
+ +VN+ TAAAL Y LD+ + + VL +D+G G+ +++ +
Sbjct: 166 LALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQI 225
Query: 2158 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLS 2215
EV D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS
Sbjct: 226 EVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLS 285
Query: 2216 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 2275
+++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V
Sbjct: 286 ANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVE 345
Query: 2276 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
L+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 346 LIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 1e-91
Identities = 137/342 (40%), Positives = 191/342 (55%), Gaps = 16/342 (4%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGER 1477
A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 48 SDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG- 106
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 1536
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV+
Sbjct: 107 EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVL 166
Query: 1537 RIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-FE 1585
+VN+ TAAAL Y LD+ + + VL +D+G G+ +++ + E
Sbjct: 167 ALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIE 226
Query: 1586 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLSS 1643
V D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS+
Sbjct: 227 VLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSA 286
Query: 1644 STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVL 1703
++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V L
Sbjct: 287 NSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVEL 346
Query: 1704 VGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 347 IGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 302 bits (774), Expect = 7e-91
Identities = 145/352 (41%), Positives = 207/352 (58%), Gaps = 17/352 (4%)
Query: 47 FTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF-- 104
G A Q NP+NT++DAKR IG+ F +++ + + F V + F
Sbjct: 68 LVGYKAVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSV 125
Query: 105 -KGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 163
E KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AG
Sbjct: 126 LTNETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAG 185
Query: 164 LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 223
L V+R++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+
Sbjct: 186 LEVLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGN 243
Query: 224 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI- 282
LGG+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 244 NRLGGQDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLN 302
Query: 283 ----DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS 338
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGS
Sbjct: 303 LTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGS 362
Query: 339 TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 387
TRIP+++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 363 TRIPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 2e-90
Identities = 145/350 (41%), Positives = 207/350 (59%), Gaps = 17/350 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF---K 678
G A Q NP+NT++DAKR IG+ F +++ + + F V + F
Sbjct: 70 GYKAVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSVLT 127
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 738
E KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL
Sbjct: 128 NETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLE 187
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
V+R++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+
Sbjct: 188 VLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGNNR 245
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI--- 855
LGG+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 246 LGGQDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLT 304
Query: 856 --DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 913
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGSTR
Sbjct: 305 LLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTR 364
Query: 914 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 960
IP+++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 365 IPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 2e-90
Identities = 145/350 (41%), Positives = 207/350 (59%), Gaps = 17/350 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF---K 2047
G A Q NP+NT++DAKR IG+ F +++ + + F V + F
Sbjct: 70 GYKAVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSVLT 127
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 2107
E KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL
Sbjct: 128 NETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLE 187
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
V+R++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+
Sbjct: 188 VLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGNNR 245
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI--- 2224
LGG+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 246 LGGQDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLT 304
Query: 2225 --DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 2282
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGSTR
Sbjct: 305 LLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTR 364
Query: 2283 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 2329
IP+++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 365 IPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 6e-90
Identities = 144/347 (41%), Positives = 206/347 (59%), Gaps = 17/347 (4%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF---KGER 1477
A Q NP+NT++DAKR IG+ F +++ + + F V + F E
Sbjct: 73 AVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSVLTNET 130
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL V+R
Sbjct: 131 KTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLR 190
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+ LGG
Sbjct: 191 VINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGNNRLGG 248
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI-----D 1652
+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 249 QDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLS 307
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGSTRIP+
Sbjct: 308 EGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPR 367
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 1756
++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 368 IRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 7e-81
Identities = 128/340 (37%), Positives = 196/340 (57%), Gaps = 8/340 (2%)
Query: 43 PLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQ 101
P + + G+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +
Sbjct: 40 PKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAE 99
Query: 102 VEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 161
V F GE+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA I
Sbjct: 100 VRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARI 159
Query: 162 AGLNVMRIVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFE 216
AGLN +RIVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +
Sbjct: 160 AGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-K 218
Query: 217 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 276
V TA D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T
Sbjct: 219 VLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT 278
Query: 277 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 336
A ++++ + +D +++SR EEL L +PV KAL AKL + V ++G
Sbjct: 279 NAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIG 338
Query: 337 GSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
G+TRIP ++ + F GK L+ ++N DEA+A GAA A
Sbjct: 339 GTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 270 bits (691), Expect = 2e-80
Identities = 127/334 (38%), Positives = 193/334 (57%), Gaps = 8/334 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQVEFKGE 680
G+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +V F GE
Sbjct: 46 GETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGE 105
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +
Sbjct: 106 KHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPV 165
Query: 741 RIVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 795
RIVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +V TA
Sbjct: 166 RIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTAC 224
Query: 796 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 855
D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A +
Sbjct: 225 DKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSV 284
Query: 856 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 915
+++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 285 ESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIP 344
Query: 916 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
++ + F GK L+ ++N DEA+A GAA A
Sbjct: 345 TLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 270 bits (691), Expect = 2e-80
Identities = 127/334 (38%), Positives = 193/334 (57%), Gaps = 8/334 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQVEFKGE 2049
G+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +V F GE
Sbjct: 46 GETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGE 105
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +
Sbjct: 106 KHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPV 165
Query: 2110 RIVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 2164
RIVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +V TA
Sbjct: 166 RIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTAC 224
Query: 2165 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224
D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A +
Sbjct: 225 DKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSV 284
Query: 2225 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 2284
+++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 285 ESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIP 344
Query: 2285 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
++ + F GK L+ ++N DEA+A GAA A
Sbjct: 345 TLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 268 bits (685), Expect = 2e-79
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 8/333 (2%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQVEFKGER 1477
+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +V F GE+
Sbjct: 47 ETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEK 106
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +R
Sbjct: 107 HVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVR 166
Query: 1538 IVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 1592
IVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +V TA D
Sbjct: 167 IVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTACD 225
Query: 1593 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 1652
H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A ++
Sbjct: 226 KHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 285
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 286 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 345
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
++ + F GK L+ ++N DEA+A GAA A
Sbjct: 346 LKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 2e-78
Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 13/347 (3%)
Query: 615 AGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPK 672
G+ G+ AK Q+ N KNT+ + + L+G+ F + + P V++ +
Sbjct: 41 HGEQEYHGNQAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQ 100
Query: 673 IQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 732
+ E + E++ L ++KE AE +LG V AV++VP +F+D Q +A A
Sbjct: 101 EKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAA 160
Query: 733 AIAGLNVMRIVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFE 789
AGL V++++ EP AA LAY + +RNV++ D GG DVS++++ G L+
Sbjct: 161 EAAGLPVLQLIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYT 219
Query: 790 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 849
+ +TA D LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST
Sbjct: 220 ILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 850 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 909
A+ +++L +GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 910 GSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 949
G+ PK+ S L F +++ +++P E VA G A+QA+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 2e-78
Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 13/347 (3%)
Query: 1984 AGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPK 2041
G+ G+ AK Q+ N KNT+ + + L+G+ F + + P V++ +
Sbjct: 41 HGEQEYHGNQAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQ 100
Query: 2042 IQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 2101
+ E + E++ L ++KE AE +LG V AV++VP +F+D Q +A A
Sbjct: 101 EKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAA 160
Query: 2102 AIAGLNVMRIVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFE 2158
AGL V++++ EP AA LAY + +RNV++ D GG DVS++++ G L+
Sbjct: 161 EAAGLPVLQLIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYT 219
Query: 2159 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 2218
+ +TA D LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST
Sbjct: 220 ILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 2219 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 2278
A+ +++L +GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 2279 GSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 2318
G+ PK+ S L F +++ +++P E VA G A+QA+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 3e-78
Identities = 122/340 (35%), Positives = 191/340 (56%), Gaps = 13/340 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPKIQVEFKG 106
G+ AK Q+ N KNT+ + + L+G+ F + + P V++ + + E
Sbjct: 48 GNQAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVP 107
Query: 107 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
+ E++ L ++KE AE +LG V AV++VP +F+D Q +A A AGL V
Sbjct: 108 KETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPV 167
Query: 167 MRIVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 223
++++ EP AA LAY + +RNV++ D GG DVS++++ G L+ + +TA D
Sbjct: 168 LQLIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYTILATAHD 226
Query: 224 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 283
LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST A+ ++
Sbjct: 227 PGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVE 286
Query: 284 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 343
+L +GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVGG+ PK
Sbjct: 287 SLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPK 346
Query: 344 VQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 376
+ S L F +++ +++P E VA G A+QA+
Sbjct: 347 LASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 1e-77
Identities = 121/338 (35%), Positives = 189/338 (55%), Gaps = 13/338 (3%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPKIQVEFKGER 1477
AK Q+ N KNT+ + + L+G+ F + + P V++ + + E +
Sbjct: 50 QAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE 109
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
E++ L ++KE AE +LG V AV++VP +F+D Q +A A AGL V++
Sbjct: 110 TILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQ 169
Query: 1538 IVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 1594
++ EP AA LAY + +RNV++ D GG DVS++++ G L+ + +TA D
Sbjct: 170 LIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYTILATAHDPG 228
Query: 1595 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 1654
LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST A+ +++L
Sbjct: 229 LGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESL 288
Query: 1655 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
+GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVGG+ PK+
Sbjct: 289 AEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLA 348
Query: 1715 SLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 1745
S L F +++ +++P E VA G A+QA+
Sbjct: 349 SNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 4e-77
Identities = 139/339 (41%), Positives = 205/339 (60%), Gaps = 11/339 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKG 106
G AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + G
Sbjct: 48 GVAAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMG 106
Query: 107 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
E F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN
Sbjct: 107 EEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNC 166
Query: 167 MRIVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
+R++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA
Sbjct: 167 LRLMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTA 225
Query: 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASI 280
D LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ +
Sbjct: 226 FDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPL 285
Query: 281 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 340
I+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TR
Sbjct: 286 NIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATR 345
Query: 341 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
IP V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 346 IPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 4e-77
Identities = 139/339 (41%), Positives = 205/339 (60%), Gaps = 11/339 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKG 679
G AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + G
Sbjct: 48 GVAAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMG 106
Query: 680 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 739
E F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN
Sbjct: 107 EEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNC 166
Query: 740 MRIVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 794
+R++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA
Sbjct: 167 LRLMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTA 225
Query: 795 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASI 853
D LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ +
Sbjct: 226 FDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPL 285
Query: 854 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 913
I+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TR
Sbjct: 286 NIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATR 345
Query: 914 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
IP V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 346 IPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 4e-77
Identities = 139/339 (41%), Positives = 205/339 (60%), Gaps = 11/339 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKG 2048
G AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + G
Sbjct: 48 GVAAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMG 106
Query: 2049 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 2108
E F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN
Sbjct: 107 EEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNC 166
Query: 2109 MRIVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 2163
+R++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA
Sbjct: 167 LRLMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTA 225
Query: 2164 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASI 2222
D LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ +
Sbjct: 226 FDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPL 285
Query: 2223 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 2282
I+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TR
Sbjct: 286 NIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATR 345
Query: 2283 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
IP V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 346 IPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 2e-76
Identities = 138/337 (40%), Positives = 204/337 (60%), Gaps = 11/337 (3%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKGER 1477
AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + GE
Sbjct: 50 AAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMGEE 108
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN +R
Sbjct: 109 HLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLR 168
Query: 1538 IVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 1592
++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA D
Sbjct: 169 LMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTAFD 227
Query: 1593 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEI 1651
LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ + I
Sbjct: 228 PFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNI 287
Query: 1652 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 1711
+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TRIP
Sbjct: 288 ECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIP 347
Query: 1712 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 348 AVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 4e-76
Identities = 121/236 (51%), Positives = 173/236 (73%), Gaps = 8/236 (3%)
Query: 1191 MPRGGPT--NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG 1248
MP+ T F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLG
Sbjct: 380 MPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLG 434
Query: 1249 IETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLT 1308
IET GGV ++LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL
Sbjct: 435 IETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLV 494
Query: 1309 GIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDA 1368
GIPPAPRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +A
Sbjct: 495 GIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEA 553
Query: 1369 ERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQ 1424
E YK++DE++KE + A+N E +++V++ L + +K+++++K +++ ++
Sbjct: 554 EEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRST 609
|
Length = 663 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 2e-75
Identities = 111/212 (52%), Positives = 155/212 (73%), Gaps = 5/212 (2%)
Query: 1202 GKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIE 1261
GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET GGVM+K+I
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIP 408
Query: 1262 RNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKID 1321
RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPPAPRGVP+I+
Sbjct: 409 RNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIE 468
Query: 1322 VTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKER 1381
VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+ ED+ ++E+
Sbjct: 469 VTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREK 527
Query: 1382 ISARNNLEAYVFNVKQALDNAGNKLTESEKSR 1413
I +N E+ + ++ L +K++E +K +
Sbjct: 528 IDLKNQAESLCYQAEKQLKELKDKISEEKKEK 559
|
Length = 621 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 4e-75
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 9/338 (2%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 107
G AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E
Sbjct: 48 GAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEE 107
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
+ F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +
Sbjct: 108 ERNFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCL 167
Query: 168 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 222
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAF 226
Query: 223 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 281
DT LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLN 286
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
I+ + ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRI
Sbjct: 287 IECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRI 346
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
P V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 4e-75
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 9/338 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 680
G AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E
Sbjct: 48 GAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEE 107
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
+ F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +
Sbjct: 108 ERNFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCL 167
Query: 741 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 795
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAF 226
Query: 796 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 854
DT LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLN 286
Query: 855 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914
I+ + ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRI
Sbjct: 287 IECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRI 346
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
P V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 4e-75
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 9/338 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 2049
G AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E
Sbjct: 48 GAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEE 107
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
+ F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +
Sbjct: 108 ERNFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCL 167
Query: 2110 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 2164
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAF 226
Query: 2165 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 2223
DT LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLN 286
Query: 2224 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 2283
I+ + ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRI
Sbjct: 287 IECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRI 346
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
P V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 254 bits (649), Expect = 1e-74
Identities = 138/336 (41%), Positives = 204/336 (60%), Gaps = 9/336 (2%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERK 1478
AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E +
Sbjct: 50 AAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEER 109
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +R+
Sbjct: 110 NFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRL 169
Query: 1539 VNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDT 1593
+NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA DT
Sbjct: 170 MNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAFDT 228
Query: 1594 HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEID 1652
LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ + I+
Sbjct: 229 TLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIE 288
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
+ ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRIP
Sbjct: 289 CFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPA 348
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 349 VKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 3e-74
Identities = 113/242 (46%), Positives = 164/242 (67%), Gaps = 6/242 (2%)
Query: 1199 FFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSK 1258
FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGIET G V +K
Sbjct: 350 FFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTK 405
Query: 1259 LIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 1318
+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTGIPPAPRGVP
Sbjct: 406 IIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVP 465
Query: 1319 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQ 1378
+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE+Y +ED R+
Sbjct: 466 QIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRR 524
Query: 1379 KERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNTVFDAKR 1438
K+ I +N ++ +++ + L G ++E K R ++ + + +P ++ + K+
Sbjct: 525 KQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLE-AALTDPNISLEELKQ 583
Query: 1439 LI 1440
+
Sbjct: 584 QL 585
|
Length = 653 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 8e-73
Identities = 128/243 (52%), Positives = 164/243 (67%), Gaps = 11/243 (4%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV +
Sbjct: 331 EFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRT 385
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
+IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRGV
Sbjct: 386 PIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGV 445
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1377
P+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D++
Sbjct: 446 PQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKK 504
Query: 1378 QKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNTVFDAK 1437
+E + ARN E+ ++++++AL K++E EK + E + + + + K
Sbjct: 505 FRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEAL----EGEKEEIK 559
Query: 1438 RLI 1440
I
Sbjct: 560 AKI 562
|
Length = 579 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 5e-72
Identities = 130/344 (37%), Positives = 212/344 (61%), Gaps = 9/344 (2%)
Query: 1412 SRCREECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQ 1470
SR R +AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ + ++
Sbjct: 42 SRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVK 101
Query: 1471 VEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 1530
V + E + FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A +
Sbjct: 102 VRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQV 161
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFE 1585
AGLN +R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +
Sbjct: 162 AGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKL-K 220
Query: 1586 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-S 1644
V +T D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S+ +
Sbjct: 221 VLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANA 280
Query: 1645 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 1704
++ + I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ + +V
Sbjct: 281 SDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIV 340
Query: 1705 GGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
GG+TRIP V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 341 GGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 6e-72
Identities = 131/347 (37%), Positives = 213/347 (61%), Gaps = 10/347 (2%)
Query: 614 SAGDMPRG-GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKP 671
S G R G+AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ +
Sbjct: 39 SLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSV 98
Query: 672 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 731
++V + E + FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A
Sbjct: 99 GVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAA 158
Query: 732 GAIAGLNVMRIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGA 786
+AGLN +R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G
Sbjct: 159 AQVAGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGK 218
Query: 787 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 846
L +V +T D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S
Sbjct: 219 L-KVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMS 277
Query: 847 S-STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDV 905
+ +++ + I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ +
Sbjct: 278 ANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSI 337
Query: 906 VLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
+VGG+TRIP V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 338 EIVGGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 6e-72
Identities = 131/347 (37%), Positives = 213/347 (61%), Gaps = 10/347 (2%)
Query: 1983 SAGDMPRG-GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKP 2040
S G R G+AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ +
Sbjct: 39 SLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSV 98
Query: 2041 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 2100
++V + E + FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A
Sbjct: 99 GVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAA 158
Query: 2101 GAIAGLNVMRIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGA 2155
+AGLN +R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G
Sbjct: 159 AQVAGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGK 218
Query: 2156 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 2215
L +V +T D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S
Sbjct: 219 L-KVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMS 277
Query: 2216 S-STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDV 2274
+ +++ + I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ +
Sbjct: 278 ANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSI 337
Query: 2275 VLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
+VGG+TRIP V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 338 EIVGGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 6e-72
Identities = 128/338 (37%), Positives = 210/338 (62%), Gaps = 9/338 (2%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 107
G+AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ + ++V + E
Sbjct: 48 GNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEE 107
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
+ FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A +AGLN +
Sbjct: 108 ERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCL 167
Query: 168 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 222
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +T
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKL-KVLATTF 226
Query: 223 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 281
D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLN 286
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ + +VGG+TRI
Sbjct: 287 IECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRI 346
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
P V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 2e-67
Identities = 102/203 (50%), Positives = 143/203 (70%), Gaps = 5/203 (2%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
+ N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET GGVM KL
Sbjct: 351 LIPREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKL 406
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
I RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPPAPRGVP+
Sbjct: 407 IPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQ 466
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
+ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE DED R++
Sbjct: 467 VQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKADEDRRRR 525
Query: 1380 ERISARNNLEAYVFNVKQALDNA 1402
ERI RN + ++ L +A
Sbjct: 526 ERIEKRNRALTLIAQAERRLRDA 548
|
Length = 668 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 1e-64
Identities = 105/235 (44%), Positives = 158/235 (67%), Gaps = 5/235 (2%)
Query: 1202 GKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIE 1261
GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+ET GGVM+K+I
Sbjct: 390 GKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLETLGGVMTKIIP 445
Query: 1262 RNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKID 1321
RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GIPPAPRGVP+I+
Sbjct: 446 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 505
Query: 1322 VTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKER 1381
V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE++ ED+ +++
Sbjct: 506 VKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDA 564
Query: 1382 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNTVFDA 1436
+ +N ++ V+ ++ L G+K+ K + + K+ +A + DA
Sbjct: 565 VDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDA 619
|
Length = 673 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (550), Expect = 1e-58
Identities = 109/216 (50%), Positives = 153/216 (70%), Gaps = 6/216 (2%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
F K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET GGV +++
Sbjct: 376 FFQKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRM 431
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPPAPRGVP+
Sbjct: 432 IPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQ 491
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++ + D ++
Sbjct: 492 IEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEADRVKR 550
Query: 1380 ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1415
E + RNN E + ++ L ++++EK +
Sbjct: 551 ELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVK 585
|
Length = 657 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 5e-56
Identities = 95/218 (43%), Positives = 139/218 (63%), Gaps = 12/218 (5%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET GG++
Sbjct: 334 ELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMGGLVE 390
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP G
Sbjct: 391 KIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGA 450
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED-- 1375
+I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +ED
Sbjct: 451 ARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMY 509
Query: 1376 --ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1411
++++ A LEA ++ AL G+ L+E E+
Sbjct: 510 ARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 2e-55
Identities = 95/231 (41%), Positives = 142/231 (61%), Gaps = 15/231 (6%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
F G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG++ K+
Sbjct: 351 FFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKI 408
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP G +
Sbjct: 409 IPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAAR 468
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED + +
Sbjct: 469 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEEDMQAR 527
Query: 1380 ----ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVA 1426
+++ A LEA ++ AL G+ L+ +E R DAA +
Sbjct: 528 ALAEQKVEAERVLEA----LQAALAADGDLLSAAE----RAAIDAAMAALR 570
|
Length = 616 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 4e-42
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 5/204 (2%)
Query: 1209 INPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPC 1268
I+PD+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 340 IDPDKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPI 395
Query: 1269 KQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 1328
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA
Sbjct: 396 SVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDA 455
Query: 1329 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNL 1388
+GIL+V+A + S S I +K + G + K EID M+ +A + D + A
Sbjct: 456 DGILSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEA 514
Query: 1389 EAYVFNVKQALDNAGNKLTESEKS 1412
EA +FN+++A+ L+ESE S
Sbjct: 515 EALIFNIERAIAELTTLLSESEIS 538
|
Length = 595 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 106 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 161
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 162 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 217
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 218 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 250
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 251 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 280
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 281 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 340
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 341 IPKVQSLLQNFF 352
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 734
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 735 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 790
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 791 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 823
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 824 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 853
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 854 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 913
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 914 IPKVQSLLQNFF 925
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 1475 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 1530
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 1531 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 1586
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 1587 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 1619
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 1620 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 1649
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 1650 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 1709
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 1710 IPKVQSLLQNFF 1721
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 2103
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 2104 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 2159
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 2160 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 2192
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 2193 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 2222
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 2223 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 2282
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 2283 IPKVQSLLQNFF 2294
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 121 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 168
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 169 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 219
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 220 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 275
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 276 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 328
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 329 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 372
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 694 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 741
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 742 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 792
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 793 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 848
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 849 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 901
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 902 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 945
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 1490 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 1537
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 1538 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 1588
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 1589 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 1644
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 1645 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 1697
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 1698 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 1741
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 2063 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 2110
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 2111 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 2161
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 2162 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 2217
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 2218 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 2270
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 2271 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 2314
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 198
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 199 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 258
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 259 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 317
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 318 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 367
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 368 AYGAA 372
A GA
Sbjct: 309 AKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 771
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 772 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 831
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 832 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 890
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 891 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 940
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 941 AYGAA 945
A GA
Sbjct: 309 AKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 1567
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 1568 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 1627
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 1628 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 1686
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 1687 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 1736
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 1737 AYGAA 1741
A GA
Sbjct: 309 AKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 2140
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 2141 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 2200
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 2201 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 2259
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 2260 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 2309
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 2310 AYGAA 2314
A GA
Sbjct: 309 AKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-10
Identities = 26/30 (86%), Positives = 27/30 (90%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILS 1227
+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 347 DFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 98 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 155
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 156 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 206
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 207 LSIDEG 212
+ +G
Sbjct: 141 VEDGKG 146
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 671 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 728
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 729 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 779
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 780 LSIDEG 785
+ +G
Sbjct: 141 VEDGKG 146
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 1467 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 1524
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 1525 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 1575
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 1576 LSIDEG 1581
+ +G
Sbjct: 141 VEDGKG 146
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 2040 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 2097
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 2098 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 2148
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 2149 LSIDEG 2154
+ +G
Sbjct: 141 VEDGKG 146
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 171
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 172 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 224
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 225 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 250
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
|
Length = 267 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 693 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 744
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 745 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 797
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 798 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 823
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
|
Length = 267 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 1489 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 1540
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 1593
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 1594 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 1619
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
|
Length = 267 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 2062 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 2113
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 2114 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 2166
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 2167 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 2192
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
|
Length = 267 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 179
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 180 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 238
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 239 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 275
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
|
Length = 277 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 693 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 752
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 753 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 811
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 812 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 848
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
|
Length = 277 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 1489 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 1548
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 1549 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 1607
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 1608 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 1644
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
|
Length = 277 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 2062 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 2121
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 2122 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 2180
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 2181 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 2217
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
|
Length = 277 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 139 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 192
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 193 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 251
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 252 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 307
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 308 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 356
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 357 LNLSINPDEAVAYGAA 372
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
|
Length = 335 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 712 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 765
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 766 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 824
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 825 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 880
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 881 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 929
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 930 LNLSINPDEAVAYGAA 945
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
|
Length = 335 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 1508 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 1561
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 1562 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 1620
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 1621 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 1676
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 1677 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 1725
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 1726 LNLSINPDEAVAYGAA 1741
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
|
Length = 335 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 2081 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 2134
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 2135 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 2193
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 2194 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 2249
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 2250 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 2298
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 2299 LNLSINPDEAVAYGAA 2314
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
|
Length = 335 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 114 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 165
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 166 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 225
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 226 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 255
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 256 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 286
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 287 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 346
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 347 LLQ 349
L
Sbjct: 418 ALA 420
|
Length = 450 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 687 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 738
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 799 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 828
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 829 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 859
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 860 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 919
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 920 LLQ 922
L
Sbjct: 418 ALA 420
|
Length = 450 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 1483 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 1534
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 1594
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 1595 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 1624
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 1625 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 1655
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 1716 LLQ 1718
L
Sbjct: 418 ALA 420
|
Length = 450 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 2056 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 2107
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 2168 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 2197
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 2198 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 2228
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 2229 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 2288
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 2289 LLQ 2291
L
Sbjct: 418 ALA 420
|
Length = 450 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 117 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 176
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 177 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 237 S-HLAEEFKRKYKKDMSV 253
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
|
Length = 239 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 690 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 749
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 750 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 809
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 810 S-HLAEEFKRKYKKDMSV 826
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
|
Length = 239 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 1486 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 1545
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 1546 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 1605
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 1606 S-HLAEEFKRKYKKDMSV 1622
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
|
Length = 239 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 2059 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 2118
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 2119 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 2178
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 2179 S-HLAEEFKRKYKKDMSV 2195
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
|
Length = 239 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-06
Identities = 19/26 (73%), Positives = 20/26 (76%)
Query: 1199 FFCGKSLNLSINPDEAVAYGAAVQAA 1224
FF GK + INPDEAVAYGAAVQA
Sbjct: 349 FFNGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 126 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 174
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 175 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 234
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 235 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 290
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 291 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 341
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 371
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 699 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 747
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 748 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 807
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 808 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 863
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 864 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 914
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 944
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 1495 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 1543
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 1544 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 1603
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 1604 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 1659
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 1660 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 1710
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 1711 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 1740
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 2068 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 2116
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 2117 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 2176
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 2177 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 2232
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 2233 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 2283
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 2313
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 275
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 276 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 335
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 336 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 373
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
|
Length = 418 |
| >gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 735 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 794
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 795 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 848
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 849 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 908
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 909 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 946
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
|
Length = 418 |
| >gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 1590
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 1591 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 1644
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 1645 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 1704
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 1705 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 1742
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
|
Length = 418 |
| >gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 2104 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 2163
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 2164 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 2217
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 2218 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 2277
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 2278 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 2315
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
|
Length = 418 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 115 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 172
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 173 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 232
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 233 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 286
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 287 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYG 370
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 688 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 745
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 746 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 805
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 806 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 859
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 860 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYG 943
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 1484 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 1541
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 1542 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 1601
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 1602 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 1655
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 1656 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 1713
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 1714 QSLLQNFFCGKSLNLSINPDEAVAYG 1739
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 2057 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 2114
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 2115 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 2174
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 2175 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 2228
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 2229 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYG 2312
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 199
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 200 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 247
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 772
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 773 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 820
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 1568
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 1569 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 1616
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 2141
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 2142 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 2189
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 199
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 200 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 248
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
|
Length = 336 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 772
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 773 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 821
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
|
Length = 336 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 1568
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 1569 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 1617
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
|
Length = 336 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 2141
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 2142 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 2190
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
|
Length = 336 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-04
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAIL 1226
GK N +NPDE VA GAA+Q +L
Sbjct: 350 LFGKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 168 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 226
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 227 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 286
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 287 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 346
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 347 LLQNFFCGKSLNLSINPDEAVAYG 370
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
|
ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments. Length = 312 |
| >gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 741 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 799
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 800 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 859
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 860 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 919
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 920 LLQNFFCGKSLNLSINPDEAVAYG 943
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
|
ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments. Length = 312 |
| >gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 1537 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 1595
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 1596 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 1655
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYG 1739
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
|
ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments. Length = 312 |
| >gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 2110 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 2168
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 2169 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 2228
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 2229 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 2288
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 2289 LLQNFFCGKSLNLSINPDEAVAYG 2312
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
|
ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments. Length = 312 |
| >gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 188 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 242
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 243 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 301
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 302 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 337
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 338 STRIPKVQSLLQNFF 352
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
|
Human HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps to 20p13) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12B. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. HSPA12B may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 468 |
| >gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 761 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 815
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 816 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 874
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 875 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 910
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 911 STRIPKVQSLLQNFF 925
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
|
Human HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps to 20p13) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12B. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. HSPA12B may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 468 |
| >gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 1557 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 1611
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 1612 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 1670
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 1671 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 1706
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 1707 STRIPKVQSLLQNFF 1721
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
|
Human HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps to 20p13) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12B. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. HSPA12B may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 468 |
| >gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 2130 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 2184
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 2185 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 2243
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 2244 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 2279
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 2280 STRIPKVQSLLQNFF 2294
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
|
Human HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps to 20p13) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12B. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. HSPA12B may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 468 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 1081 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1140
L E+ D I +Y ++ ++K +I N +A + +K+A + A +L+ SE+S
Sbjct: 222 LGGEDFDNAI---VQYIIKEFKRKYKIDLTRNKKA-IQRIKEAAEKAKIELSSSEESV-- 275
Query: 1141 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCM-----PLMSKMHGG------------A 1183
L +LD + + +QL+KS P +
Sbjct: 276 ----IELPYLDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILV 331
Query: 1184 GGASAGDMPRGGPTNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1226
GG + + F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 332 GGMTRMPYIQNVVQEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 199
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 200 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 258
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 259 RRLRT 263
+++
Sbjct: 210 EKIKI 214
|
Length = 342 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 772
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 773 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 831
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 832 RRLRT 836
+++
Sbjct: 210 EKIKI 214
|
Length = 342 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 1568
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 1569 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 1627
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 1628 RRLRT 1632
+++
Sbjct: 210 EKIKI 214
|
Length = 342 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 2141
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 2142 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 2200
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 2201 RRLRT 2205
+++
Sbjct: 210 EKIKI 214
|
Length = 342 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.004
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 879 DLFRSTLQPVEKALQDA-----KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 933
DL R+ L+ V AL+D+ + I + L+GG + P + +L + F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-----GTP 417
Query: 934 I---NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 987
+ +E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 418 VDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.004
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 1675 DLFRSTLQPVEKALQDA-----KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 1729
DL R+ L+ V AL+D+ + I + L+GG + P + +L + F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-----GTP 417
Query: 1730 I---NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 1783
+ +E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 418 VDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.004
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 2248 DLFRSTLQPVEKALQDA-----KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 2302
DL R+ L+ V AL+D+ + I + L+GG + P + +L + F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-----GTP 417
Query: 2303 I---NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 2356
+ +E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 418 VDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2568 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| KOG0100|consensus | 663 | 100.0 | ||
| KOG0101|consensus | 620 | 100.0 | ||
| KOG0102|consensus | 640 | 100.0 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| KOG0101|consensus | 620 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| KOG0103|consensus | 727 | 100.0 | ||
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 99.98 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 99.97 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.96 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.96 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.96 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.95 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.95 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.95 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.95 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.93 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.93 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.91 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.91 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.88 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.86 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.79 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.75 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.73 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.72 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.68 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.46 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.4 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.38 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.21 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.08 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.07 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.05 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 98.98 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 98.89 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 98.85 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 98.77 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 98.56 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 98.53 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 98.53 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.49 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.45 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 98.43 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 98.42 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.38 | |
| PTZ00452 | 375 | actin; Provisional | 98.37 | |
| PTZ00281 | 376 | actin; Provisional | 98.36 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.36 | |
| PTZ00004 | 378 | actin-2; Provisional | 98.14 | |
| PTZ00004 | 378 | actin-2; Provisional | 98.11 | |
| PTZ00281 | 376 | actin; Provisional | 98.1 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.08 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 98.0 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 97.99 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 97.98 | |
| PTZ00452 | 375 | actin; Provisional | 97.93 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 97.92 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 97.86 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 97.8 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 97.68 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.56 | |
| KOG0679|consensus | 426 | 97.53 | ||
| KOG0679|consensus | 426 | 97.52 | ||
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 97.27 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 97.13 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 97.1 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 96.96 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 96.92 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 96.74 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 96.73 | |
| KOG0797|consensus | 618 | 96.56 | ||
| KOG0797|consensus | 618 | 96.53 | ||
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 96.53 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 96.4 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 96.23 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 95.98 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 95.88 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 95.44 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 95.37 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 95.24 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 95.23 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 95.21 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 95.11 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 95.05 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 94.1 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 94.06 | |
| KOG0676|consensus | 372 | 94.05 | ||
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 93.98 | |
| KOG0676|consensus | 372 | 93.86 | ||
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 93.58 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 92.62 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 91.76 | |
| PRK15027 | 484 | xylulokinase; Provisional | 91.44 | |
| PLN02669 | 556 | xylulokinase | 91.04 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 90.93 | |
| PRK15027 | 484 | xylulokinase; Provisional | 90.9 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 90.88 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 90.86 | |
| PLN02669 | 556 | xylulokinase | 90.71 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 90.54 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 90.44 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 89.63 | |
| KOG2517|consensus | 516 | 88.81 | ||
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 88.62 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 88.61 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 88.13 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 87.91 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 87.89 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 87.83 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 87.68 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 87.35 | |
| PRK04123 | 548 | ribulokinase; Provisional | 87.32 | |
| KOG2517|consensus | 516 | 87.17 | ||
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 87.13 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 87.05 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 87.01 | |
| PRK04123 | 548 | ribulokinase; Provisional | 86.81 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 86.75 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 86.61 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 86.48 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 86.38 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 86.26 | |
| PLN02295 | 512 | glycerol kinase | 85.98 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 85.69 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 85.47 | |
| PRK09604 | 332 | UGMP family protein; Validated | 85.42 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 85.17 | |
| PLN02295 | 512 | glycerol kinase | 85.04 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 84.87 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 84.36 | |
| KOG2531|consensus | 545 | 84.33 | ||
| KOG0677|consensus | 389 | 84.25 | ||
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 84.16 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 84.11 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 83.91 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 83.25 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 83.16 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 82.85 | |
| PRK09557 | 301 | fructokinase; Reviewed | 82.68 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 82.57 | |
| KOG2531|consensus | 545 | 82.44 | ||
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 81.72 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 80.49 | |
| KOG0677|consensus | 389 | 80.15 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-149 Score=1272.11 Aligned_cols=574 Identities=60% Similarity=0.966 Sum_probs=559.9
Q ss_pred CCCCCCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEc-CceeeeChhhhH
Q psy7639 1981 GASAGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK-GERKTFAPEEIS 2059 (2568)
Q Consensus 1981 ~~~~~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~-~~~~~~~peei~ 2059 (2568)
.++.+++|++|++||+|+..||+|||+++||||||+|+|+.||+++++|||+|++++++|.++|..+ |+.+.|+|||||
T Consensus 74 VaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiS 153 (663)
T KOG0100|consen 74 VAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEIS 153 (663)
T ss_pred eeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHH
Confidence 3677889999999999999999999999999999999999999999999999999999999999987 568899999999
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEee
Q psy7639 2060 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 2139 (2568)
Q Consensus 2060 a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~Dl 2139 (2568)
||||.+||++||+|||.+|++||+||||||||+|||||+||+.||||||+||||||||||+|||++++ ..+++||||||
T Consensus 154 aMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDL 232 (663)
T KOG0100|consen 154 AMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDL 232 (663)
T ss_pred HHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhccccc-CCcceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 46899999999
Q ss_pred CCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcce
Q psy7639 2140 GGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE 2219 (2568)
Q Consensus 2140 Gggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~ 2219 (2568)
||||||||+|.+++| +|+|+||+||+||||+|||+++++||++-+++|++.|++.|.||+++|+.+||+||+.||++.+
T Consensus 233 GGGTFDVSlLtIdnG-VFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq 311 (663)
T KOG0100|consen 233 GGGTFDVSLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQ 311 (663)
T ss_pred CCceEEEEEEEEcCc-eEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCC
Q psy7639 2220 ASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL 2299 (2568)
Q Consensus 2220 ~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~ 2299 (2568)
+.|+|++|++|.||+-++||++||+|+.+||+.++.|++++|++++|.++|||+|+|||||||||+||++|++||+|+++
T Consensus 312 ~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKep 391 (663)
T KOG0100|consen 312 VRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEP 391 (663)
T ss_pred eEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEE
Q psy7639 2300 NLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVT 2379 (2568)
Q Consensus 2300 ~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~ 2379 (2568)
++.+|||||||+|||+||+.|||+ ....+++|+||+|+++|||+.||+|++||||||.||+++++.|+|+.|||+.|.
T Consensus 392 skGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~ 469 (663)
T KOG0100|consen 392 SKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVT 469 (663)
T ss_pred cCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEE
Confidence 999999999999999999999994 578899999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHH
Q psy7639 2380 IQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMI 2459 (2568)
Q Consensus 2380 i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~ 2459 (2568)
|+||+|||++.+||++||+|.|+||||+|+|+|+|+|||++|+||||+|+|.|+.||++++|+|+++.++||+|+|++|+
T Consensus 470 I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv 549 (663)
T KOG0100|consen 470 IQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMV 549 (663)
T ss_pred EEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhcc---CCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Q psy7639 2460 NDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAG---NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQ 2536 (2568)
Q Consensus 2460 ~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~---~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~ 2536 (2568)
.++++|+++|++.++++++||+||+|.|++++.+.+.. .+++++++++++.+++++.+||+.|++|++|+|++++++
T Consensus 550 ~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~ke 629 (663)
T KOG0100|consen 550 NEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKE 629 (663)
T ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999997643 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC
Q psy7639 2537 LQKSCMPLMSKMHGGASAGDMP 2558 (2568)
Q Consensus 2537 L~~~~~pi~~r~~e~~g~~~~~ 2558 (2568)
|+.+|+||++++|+.+|++|.+
T Consensus 630 le~vv~PiisklY~~ag~~~~~ 651 (663)
T KOG0100|consen 630 LEAVVQPIISKLYGGAGGAPEP 651 (663)
T ss_pred HHHHHHHHHHHHhhhcCCCCCC
Confidence 9999999999999876655543
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-134 Score=1155.87 Aligned_cols=602 Identities=58% Similarity=0.934 Sum_probs=585.4
Q ss_pred HHHhcccccEEEEEEcccccc--cccCCcccccccccc---hhhhhHHHHhhhcCCCccccccccccccccCChhhhhcc
Q psy7639 1379 KERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRC---REECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDM 1453 (2568)
Q Consensus 1379 ~~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~---~~~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~ 1453 (2568)
...||||.||++++.|+..++ |++|||+|||+|+|+ +.+|++|++|+..||+||+++.||+|||.|+|+.+|+++
T Consensus 40 gIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Di 119 (663)
T KOG0100|consen 40 GIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDI 119 (663)
T ss_pred EEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhhhhh
Confidence 345999999999999999888 999999999999995 447999999999999999999999999999999999999
Q ss_pred cccccEEeeCCCCCceeEEec-CCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcC
Q psy7639 1454 KHWPFTVVNDCSKPKIQVEFK-GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 1532 (2568)
Q Consensus 1454 k~~~~~~~~~~~~~~~~v~~~-~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AG 1532 (2568)
|+|||+++..+++|+++|.+. +..+.|+|+||+||+|.+||+.||.|||.+++++|+|||||||++|||++++|+.+||
T Consensus 120 k~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAg 199 (663)
T KOG0100|consen 120 KFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAG 199 (663)
T ss_pred hcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceecc
Confidence 999999999999999999998 4588999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHH
Q psy7639 1533 LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612 (2568)
Q Consensus 1533 L~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~ 1612 (2568)
|+|+||||||||||++|++++.. .++++||||+||||||||++.+++| +|+|++++||++|||+|||.++++||.+-+
T Consensus 200 LnV~RIiNePTaAAIAYGLDKk~-gEknilVfDLGGGTFDVSlLtIdnG-VFeVlaTnGDThLGGEDFD~rvm~~fikly 277 (663)
T KOG0100|consen 200 LNVVRIINEPTAAAIAYGLDKKD-GEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEYFIKLY 277 (663)
T ss_pred ceEEEeecCccHHHHHhcccccC-CcceEEEEEcCCceEEEEEEEEcCc-eEEEEecCCCcccCccchHHHHHHHHHHHH
Confidence 99999999999999999998854 5789999999999999999999888 999999999999999999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q psy7639 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAK 1692 (2568)
Q Consensus 1613 ~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~ 1692 (2568)
+++++.|++.+.+++++|+++||+||+.||+..++.|.|+++.+|.||+.++||+.||++..++|.+++.|++++|++++
T Consensus 278 kkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~ 357 (663)
T KOG0100|consen 278 KKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSD 357 (663)
T ss_pred hhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccceee
Q psy7639 1693 LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 1772 (2568)
Q Consensus 1693 ~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie~ 1772 (2568)
+.+++||.|+|||||+|+|.||++|+++|+++.++..+||+||||+|||+||++++|.. ...+++|+||+|+|+|||+
T Consensus 358 lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee--~t~divLLDv~pLtlGIET 435 (663)
T KOG0100|consen 358 LKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEE--DTGDIVLLDVNPLTLGIET 435 (663)
T ss_pred cccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccccc--CcCcEEEEeeccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999975 5679999999999999999
Q ss_pred cCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCee
Q psy7639 1773 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 1852 (2568)
Q Consensus 1773 ~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nGi 1852 (2568)
.||.|+++|||||.||+++++.|+|+.|||+.+.|.||+||++|.++|++||+|.|+||||+|+|+|+|+|||++|.|||
T Consensus 436 vGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangi 515 (663)
T KOG0100|consen 436 VGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGI 515 (663)
T ss_pred ecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCCH
Q psy7639 1853 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD---NAGNKLTE 1929 (2568)
Q Consensus 1853 L~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~---~~~~~~~~ 1929 (2568)
|+|+|.|+.||++.+|+|+|+.++||.|+|++|+++|++|+++|+..++++++||.||+|.|++++.+. .++.++++
T Consensus 516 L~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~ 595 (663)
T KOG0100|consen 516 LQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSD 595 (663)
T ss_pred EEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999993 47899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCCCCCC
Q psy7639 1930 SEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASA 1984 (2568)
Q Consensus 1930 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~ 1984 (2568)
++++.+..++++..+||+.|+.+++|+|+++.++|+.+|.||.+++|+++|++..
T Consensus 596 edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~~~~ 650 (663)
T KOG0100|consen 596 EDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGGAPE 650 (663)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 9999999999999999999999999999999999999999999999998876644
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-112 Score=1072.71 Aligned_cols=570 Identities=71% Similarity=1.088 Sum_probs=557.6
Q ss_pred CCCCCCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEE-ecCCCceEEEEEcCceeeeChhhhH
Q psy7639 1981 GASAGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV-NDCSKPKIQVEFKGERKTFAPEEIS 2059 (2568)
Q Consensus 1981 ~~~~~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~peei~ 2059 (2568)
-++.++++++|.+|++|..+||.||++++||||||.|+||.+|.++++|||.|. +.++.+.+++.+.++.+.|+|++++
T Consensus 45 vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeis 124 (620)
T KOG0101|consen 45 VAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEIS 124 (620)
T ss_pred eeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeee
Confidence 355667899999999999999999999999999999999999999999999999 5566899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEee
Q psy7639 2060 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 2139 (2568)
Q Consensus 2060 a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~Dl 2139 (2568)
+|+|.+||+.|++|||.+|.+||||||+||++.||+||++||.+|||+|+||||||||||||||++++.....+|||||+
T Consensus 125 s~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~Dl 204 (620)
T KOG0101|consen 125 SMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDL 204 (620)
T ss_pred ehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988667899999999
Q ss_pred CCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcce
Q psy7639 2140 GGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE 2219 (2568)
Q Consensus 2140 Gggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~ 2219 (2568)
||||||||++.+.+| .++|++++||+||||+|||++|+.||+.+|++|++.|++.|+++++||+.+||++|+.||+.++
T Consensus 205 Gggtfdvs~l~i~gG-~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~ 283 (620)
T KOG0101|consen 205 GGGTFDVSVLSLEGG-IFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQ 283 (620)
T ss_pred CCCceeeeeEEeccc-hhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCC
Q psy7639 2220 ASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL 2299 (2568)
Q Consensus 2220 ~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~ 2299 (2568)
+++.+++|++|.||..+|||++||++|.+||.+|+++++++|+++++++.+|++|+|||||||||++|++|+++|+++++
T Consensus 284 ~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~ 363 (620)
T KOG0101|consen 284 ASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKEL 363 (620)
T ss_pred ceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEE
Q psy7639 2300 NLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVT 2379 (2568)
Q Consensus 2300 ~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~ 2379 (2568)
..++||||+||+|||+|||.++|.....+.++++.|++|+|+||++.+|.|+++|+|||++|++++++|+|+.|||+.|.
T Consensus 364 ~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~ 443 (620)
T KOG0101|consen 364 NKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVL 443 (620)
T ss_pred ccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCcee
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHH
Q psy7639 2380 IQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMI 2459 (2568)
Q Consensus 2380 i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~ 2459 (2568)
|.|||||+.+++||++||.|+|+||||+|+|+|+|+|+|++|.||||+|+|++++|||...++|++..++||+++|++|.
T Consensus 444 I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~ 523 (620)
T KOG0101|consen 444 IQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMV 523 (620)
T ss_pred EEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Q psy7639 2460 NDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 2539 (2568)
Q Consensus 2460 ~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~ 2539 (2568)
.+++.+..+|+..++++.++|+||+|+|+++..+++..++++++++.++.++|+++..||+.++.+.+++|++|.++|+.
T Consensus 524 ~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~ 603 (620)
T KOG0101|consen 524 QEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELEL 603 (620)
T ss_pred hhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999877899999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHhcC
Q psy7639 2540 SCMPLMSKMHGG 2551 (2568)
Q Consensus 2540 ~~~pi~~r~~e~ 2551 (2568)
.|.||+.+++++
T Consensus 604 ~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 604 VCNPIISKLYQG 615 (620)
T ss_pred hccHHHHhhhcc
Confidence 999999999865
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-109 Score=988.04 Aligned_cols=555 Identities=51% Similarity=0.816 Sum_probs=533.4
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
+++|||..|++|...||.||++.-||||||+|+||++|.+++..||+++. .+|..+++. .| +.|+|.++.+|+|.
T Consensus 71 ge~Lvg~~akrqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~ 146 (640)
T KOG0102|consen 71 GERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLM 146 (640)
T ss_pred ccEEecchhhhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999994 677766665 44 89999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|++|+|.+|+++||||||||||.||+||++|++||||+|+|+|||||||||+||++++. +..++|||||||||
T Consensus 147 kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k~--~g~iaV~dLgggtf 224 (640)
T KOG0102|consen 147 KMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKE--DGVIAVFDLGGGTF 224 (640)
T ss_pred HHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhcccccC--CCceEEEEcCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999873 68899999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
|+||+.+.+| +|+|++|.||+||||+|||..+++|++.+|++..++|+..|.+|++||+++||+||..||+..+..+++
T Consensus 225 disilei~~g-vfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~l 303 (640)
T KOG0102|consen 225 DISILEIEDG-VFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINL 303 (640)
T ss_pred eeeeehhccc-eeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceecc
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCC
Q psy7639 2225 DALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 2300 (2568)
Q Consensus 2225 ~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~ 2300 (2568)
+.+..+ .++++++||++||+++.+|++|+++||+++|++|++..+||++|+||||+||||+||+.|.+.| |+.++
T Consensus 304 p~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~ 382 (640)
T KOG0102|consen 304 PFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPS 382 (640)
T ss_pred ceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCC
Confidence 999877 6899999999999999999999999999999999999999999999999999999999999999 78999
Q ss_pred CCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEE
Q psy7639 2301 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTI 2380 (2568)
Q Consensus 2301 ~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i 2380 (2568)
.++||||+||.|||+|++.|+| .|++++|+||+|++||||+.||.|++||||||+||+++++.|+|..|+|+.|.|
T Consensus 383 ~~vnPdeava~GAaiqggvl~g----eVkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~i 458 (640)
T KOG0102|consen 383 KGVNPDEAVAGGAAIQGGVLSG----EVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEI 458 (640)
T ss_pred CCcCCcchhccchhhccchhhc----cccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEE
Confidence 9999999999999999999999 699999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHH
Q psy7639 2381 QVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIN 2460 (2568)
Q Consensus 2381 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~ 2460 (2568)
.|+||||+++.+|++||.|.|.||||+|+|.|+|+|+|+||+|||.+|+|.|+.|||.+++++... ++||+++|++|++
T Consensus 459 kv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~ 537 (640)
T KOG0102|consen 459 KVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVG 537 (640)
T ss_pred EeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 5699999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Q psy7639 2461 DAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 2540 (2568)
Q Consensus 2461 ~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~ 2540 (2568)
++++|+..|+.+|++++..|++++++|+.+..+.++.++++.++..+|+..+....+.+..-...+.++++.+...|++.
T Consensus 538 eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~ 617 (640)
T KOG0102|consen 538 EAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQA 617 (640)
T ss_pred HHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999889999999999999999999988642223458999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy7639 2541 CMPLMSKMHGGAS 2553 (2568)
Q Consensus 2541 ~~pi~~r~~e~~g 2553 (2568)
..|+++.++..++
T Consensus 618 ~lkl~es~~k~~~ 630 (640)
T KOG0102|consen 618 SLKLFESAYKNMG 630 (640)
T ss_pred hhHHHHHHHhhhc
Confidence 9999999997543
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-102 Score=1046.29 Aligned_cols=584 Identities=69% Similarity=1.068 Sum_probs=552.1
Q ss_pred CCCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEE-ecCCCceEEEEEcCceeeeChhhhHHHH
Q psy7639 1984 AGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV-NDCSKPKIQVEFKGERKTFAPEEISSMV 2062 (2568)
Q Consensus 1984 ~~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~peei~a~i 2062 (2568)
.++.+++|++|+.++.+||+||++++|||||++|+|+.+|.+.++|||.++ ..++.+.+.+.+.++.+.|+||||+||+
T Consensus 45 ~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~i 124 (653)
T PTZ00009 45 TDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124 (653)
T ss_pred CCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999987 4677888999888877899999999999
Q ss_pred HHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCe
Q psy7639 2063 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGG 2142 (2568)
Q Consensus 2063 L~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGgg 2142 (2568)
|++||+.|++++|.+|++|||||||||++.||+||++||++|||+|++|||||||||++||+.+....++++||||||||
T Consensus 125 L~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~Ggg 204 (653)
T PTZ00009 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGG 204 (653)
T ss_pred HHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999765445688999999999
Q ss_pred eeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHhhccCCcceeE
Q psy7639 2143 TFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY-KKDMSVNPRALRRLRTAAERAKRTLSSSTEAS 2221 (2568)
Q Consensus 2143 t~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~-~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~ 2221 (2568)
||||||+++.+| .++|+++.||.+|||+|||++|++|++++|++++ +.++..++++++||+.+||+||+.||++.++.
T Consensus 205 T~dvsv~~~~~~-~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~ 283 (653)
T PTZ00009 205 TFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQAT 283 (653)
T ss_pred eEEEEEEEEeCC-eEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 999999999988 8999999999999999999999999999999988 47888999999999999999999999999999
Q ss_pred EEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCC
Q psy7639 2222 IEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL 2301 (2568)
Q Consensus 2222 ~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~ 2301 (2568)
+.|+++++|.|++++|||++||++|++++++++.+|+++|+++++++.+|+.|+|||||||||+||++|+++|+++++..
T Consensus 284 i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~ 363 (653)
T PTZ00009 284 IEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCK 363 (653)
T ss_pred EEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEE
Q psy7639 2302 SINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQ 2381 (2568)
Q Consensus 2302 ~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~ 2381 (2568)
++|||||||+|||++||+|++...++++++.+.|++|++||+++.+|.+.+|||||++||++++++|+|..|+|+.+.|+
T Consensus 364 ~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~ 443 (653)
T PTZ00009 364 SINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQ 443 (653)
T ss_pred CCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEE
Confidence 99999999999999999999866678899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHH
Q psy7639 2382 VFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIND 2461 (2568)
Q Consensus 2382 v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~ 2461 (2568)
||||++..+.+|..||+|.|.++|++++|.++|+|+|++|.||+|+|++.++.||+...+++.....+||++++++++++
T Consensus 444 i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~ 523 (653)
T PTZ00009 444 VFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNE 523 (653)
T ss_pred EEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988866678999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhh--ccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Q psy7639 2462 AERYKDEDERQKERISARNNLEAYVFNVKQALDN--AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 2539 (2568)
Q Consensus 2462 ~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~--~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~ 2539 (2568)
+.++..+|+.++++.+++|+||+|||++|++|.+ +...+++++++++++.+++.++||+++++++.++|++++++|++
T Consensus 524 ~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~ 603 (653)
T PTZ00009 524 AEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVES 603 (653)
T ss_pred HHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999975 44789999999999999999999998878899999999999999
Q ss_pred HHHHHHHHHhcCC-CCCC------CC----C----------CCCCcCCCC
Q psy7639 2540 SCMPLMSKMHGGA-SAGD------MP----R----------GGPTVEEVD 2568 (2568)
Q Consensus 2540 ~~~pi~~r~~e~~-g~~~------~~----g----------~g~~~~e~d 2568 (2568)
.+.|+..|++..+ ||+| +| | +||||||||
T Consensus 604 ~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (653)
T PTZ00009 604 VCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGAGASSGPTVEEVD 653 (653)
T ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCC
Confidence 9999999998642 2222 11 1 479999998
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-102 Score=929.15 Aligned_cols=592 Identities=49% Similarity=0.773 Sum_probs=566.2
Q ss_pred HHHHHhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhh
Q psy7639 1377 RQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQ 1450 (2568)
Q Consensus 1377 ~~~~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~ 1450 (2568)
-..-++||||||++++.+..+.. |.+|.|+|||+|+|+.+ +|..|++|+..||.||++.-||+|||+++|+.++
T Consensus 29 vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~evq 108 (640)
T KOG0102|consen 29 VIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQ 108 (640)
T ss_pred eeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHHH
Confidence 35567999999999999988877 99999999999999544 6999999999999999999999999999999999
Q ss_pred hcccccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHH
Q psy7639 1451 QDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 1530 (2568)
Q Consensus 1451 ~~~k~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~ 1530 (2568)
++++.+||++++ ..+...++++ .++.|+|.++.+++|.+||++|+.|++..+..+|+|||||||+.||+++++|+++
T Consensus 109 ~~~k~vpyKiVk-~~ngdaw~e~--~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~i 185 (640)
T KOG0102|consen 109 KDIKQVPYKIVK-ASNGDAWVEA--RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQI 185 (640)
T ss_pred HHHHhCCcceEE-ccCCcEEEEe--CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhh
Confidence 999999999999 6677788888 7899999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHH
Q psy7639 1531 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 1610 (2568)
Q Consensus 1531 AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~ 1610 (2568)
|||+|++++|||||||++|+++.+. ...++|||+||||||+||+++++| +|+|.++.||.+|||+|||..+..|+..
T Consensus 186 agl~vlrvineptaaalaygld~k~--~g~iaV~dLgggtfdisilei~~g-vfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 186 AGLNVLRVINEPTAAALAYGLDKKE--DGVIAVFDLGGGTFDISILEIEDG-VFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred ccceeeccCCccchhHHhhcccccC--CCceEEEEcCCceeeeeeehhccc-eeEEEeccCccccChhHHHHHHHHHHHH
Confidence 9999999999999999999998754 678999999999999999999988 9999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCC----cceeeecCHHHHHHHHhHHHHHHHHHHHH
Q psy7639 1611 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEK 1686 (2568)
Q Consensus 1611 ~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~l~~pli~~i~~~i~~ 1686 (2568)
+|++..++++..+..++++|++++|++|+.||...++.|++|+...+ ..+.+++||.+||+++.++|+|+++++.+
T Consensus 263 ~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~ 342 (640)
T KOG0102|consen 263 EFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKK 342 (640)
T ss_pred hhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999987754 56899999999999999999999999999
Q ss_pred HHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeeccc
Q psy7639 1687 ALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPL 1766 (2568)
Q Consensus 1687 ~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~ 1766 (2568)
+|++|++..+||++|+||||++|||.|++.|++.| ++.+...+|||++||.|||+|++.++|. +++++|+||+|+
T Consensus 343 aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdVtpL 417 (640)
T KOG0102|consen 343 ALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDVTPL 417 (640)
T ss_pred HHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeecchH
Confidence 99999999999999999999999999999999999 6778899999999999999999999985 689999999999
Q ss_pred ccceeecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEE
Q psy7639 1767 SLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFD 1846 (2568)
Q Consensus 1767 slGie~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~ 1846 (2568)
+||||+.+|.|..+|||||+||+++++.|+|+.|+|+.|.|+|||||+.+..+|.++|.|.+.||||.|+|.|+|+|+|+
T Consensus 418 sLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfD 497 (640)
T KOG0102|consen 418 SLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFD 497 (640)
T ss_pred HHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCeeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7639 1847 LDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNK 1926 (2568)
Q Consensus 1847 id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~ 1926 (2568)
||+|||.+|+|+|+.||++++|+|..+.+ ||++||++|++++++|...|+.++++++..|.++++++..++.+.++..+
T Consensus 498 IdanGI~~vsA~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~ 576 (640)
T KOG0102|consen 498 IDANGIGTVSAKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEK 576 (640)
T ss_pred ecCCceeeeehhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhh
Confidence 99999999999999999999999998755 99999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCC
Q psy7639 1927 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 1980 (2568)
Q Consensus 1927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 1980 (2568)
++.+..++|+..+..+.+++.+-...+.++++.++..|++..+|+.+.+|..++
T Consensus 577 ~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~ 630 (640)
T KOG0102|consen 577 IPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMG 630 (640)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 999999999999999999997655667899999999999999999999997543
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-101 Score=968.76 Aligned_cols=599 Identities=68% Similarity=1.041 Sum_probs=582.4
Q ss_pred HHHhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcc
Q psy7639 1379 KERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDM 1453 (2568)
Q Consensus 1379 ~~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~ 1453 (2568)
...||||.|++++|.+++..+ |.+|+++|||+|+|..+ +|..|++|...||.||++++||+||+.++|+.++.++
T Consensus 11 GIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~ 90 (620)
T KOG0101|consen 11 GIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDM 90 (620)
T ss_pred eEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhhHhHh
Confidence 456999999999999887777 99999999999999654 6999999999999999999999999999999999999
Q ss_pred cccccEEeeCC-CCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcC
Q psy7639 1454 KHWPFTVVNDC-SKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 1532 (2568)
Q Consensus 1454 k~~~~~~~~~~-~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AG 1532 (2568)
++|||.+.... .+|.+.+.+++..+.|+|+++++++|.+|++.|+.|+|.++.++|+|||+||++.||+++++|+.+||
T Consensus 91 k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaG 170 (620)
T KOG0101|consen 91 KLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAG 170 (620)
T ss_pred hcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcC
Confidence 99999999554 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHH
Q psy7639 1533 LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612 (2568)
Q Consensus 1533 L~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~ 1612 (2568)
|+++++|+||+|||++|++++......++||||+||||||||++.+..| ++.|+++.||++|||++||+.|.+|+..+|
T Consensus 171 l~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG-~~~vkat~gd~~lGGedf~~~l~~h~~~ef 249 (620)
T KOG0101|consen 171 LNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGG-IFEVKATAGDTHLGGEDFDNKLVNHFAAEF 249 (620)
T ss_pred CceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccc-hhhhhhhcccccccchhhhHHHHHHHHHHH
Confidence 9999999999999999998887777889999999999999999999888 999999999999999999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q psy7639 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAK 1692 (2568)
Q Consensus 1613 ~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~ 1692 (2568)
+++++.+...+.+++.+|+.+||.+|+.||+..++++.++++++|.+|...|||.+||++|.+++.++..+++.+|++++
T Consensus 250 ~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~ 329 (620)
T KOG0101|consen 250 KRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAK 329 (620)
T ss_pred HHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccceee
Q psy7639 1693 LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 1772 (2568)
Q Consensus 1693 ~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie~ 1772 (2568)
+.+.+|+.|+||||||++|.+|..++++|+++.+..++||||+||+|||+||++++|..+..+.+++++|+.|+++||++
T Consensus 330 ~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~ 409 (620)
T KOG0101|consen 330 LDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVET 409 (620)
T ss_pred cCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999988877899999999999999999
Q ss_pred cCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCee
Q psy7639 1773 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 1852 (2568)
Q Consensus 1773 ~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nGi 1852 (2568)
.+|.|.++|+|||++|+.++++|+|+.|||+.+.|.|||||+.++++|.+||.|+|.||||+|+|+|+|+|+|+||.|||
T Consensus 410 a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngi 489 (620)
T KOG0101|consen 410 AGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI 489 (620)
T ss_pred cCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q psy7639 1853 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1932 (2568)
Q Consensus 1853 L~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~~~ 1932 (2568)
|+|++.|++||++..++|+++.++||+++|++|+.++++|+.+|..+++++.++|.||+|+|+++..+++..++++++++
T Consensus 490 L~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~~~i~~~~~ 569 (620)
T KOG0101|consen 490 LNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEKGKINEEDK 569 (620)
T ss_pred EEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhccccChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888799999999
Q ss_pred HHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCC
Q psy7639 1933 SRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGG 1978 (2568)
Q Consensus 1933 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~ 1978 (2568)
.++.+.|.++.+||+.|+.+++++|+.|.++|+..|.||+.++|++
T Consensus 570 ~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 570 QKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 9999999999999999998999999999999999999999999986
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-99 Score=1010.66 Aligned_cols=553 Identities=48% Similarity=0.761 Sum_probs=521.5
Q ss_pred CCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHH
Q psy7639 1985 GDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVL 2063 (2568)
Q Consensus 1985 ~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL 2063 (2568)
++.++||.+|++++.+||.+|++++||+||++|+|+.++...+.|||.++. .++.+.+.. +..+.|+|+||++|+|
T Consensus 69 ~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL 145 (657)
T PTZ00186 69 GSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVL 145 (657)
T ss_pred CCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999984 455544432 2247899999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCee
Q psy7639 2064 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGT 2143 (2568)
Q Consensus 2064 ~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt 2143 (2568)
++||+.|++++|.+|++|||||||||++.||+||++||++|||+|+||||||||||++||+++. .++++|||||||||
T Consensus 146 ~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT 223 (657)
T PTZ00186 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGT 223 (657)
T ss_pred HHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999998764 46899999999999
Q ss_pred eEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEE
Q psy7639 2144 FDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE 2223 (2568)
Q Consensus 2144 ~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~ 2223 (2568)
|||||+++.+| .|+|++++||.+|||+|||++|++|++++|+++++.|+..+++++++|+.+||+||+.||.+.++.++
T Consensus 224 ~DvSil~~~~g-~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~ 302 (657)
T PTZ00186 224 FDISVLEIAGG-VFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVN 302 (657)
T ss_pred EEEEEEEEeCC-EEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCC
Q psy7639 2224 IDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL 2299 (2568)
Q Consensus 2224 i~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~ 2299 (2568)
++++..+ .++.++|||++||+||++|++|++.+|+++|++|++++.+||.|+|||||||||+||++|+++| ++++
T Consensus 303 i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~ 381 (657)
T PTZ00186 303 LPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDP 381 (657)
T ss_pred EeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCc
Confidence 9887643 4689999999999999999999999999999999999999999999999999999999999999 5677
Q ss_pred CCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEE
Q psy7639 2300 NLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVT 2379 (2568)
Q Consensus 2300 ~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~ 2379 (2568)
..++|||||||+|||+||++|++ .++++.+.|++|+||||++.+|.+.+||||||+||++++++|+|..|||+.+.
T Consensus 382 ~~~~nPdeaVA~GAAi~a~~l~~----~~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~ 457 (657)
T PTZ00186 382 FRGVNPDEAVALGAATLGGVLRG----DVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVG 457 (657)
T ss_pred cccCCCchHHHHhHHHHHHHhcc----ccCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEE
Confidence 78999999999999999999998 46789999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHH
Q psy7639 2380 IQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMI 2459 (2568)
Q Consensus 2380 i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~ 2459 (2568)
|+|||||+.++.+|..||+|+|.|+||+|+|.++|+|+|++|.||+|+|+|.++.||++..++|... .+||+++|++|+
T Consensus 458 i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~ 536 (657)
T PTZ00186 458 IKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMI 536 (657)
T ss_pred EEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 579999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Q psy7639 2460 NDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 2539 (2568)
Q Consensus 2460 ~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~ 2539 (2568)
+++++++.+|+.++++.+++|++|.+++.+++.+.+. ..+++++++.++..++..++||.. ++.+.++|++++++|++
T Consensus 537 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~ 614 (657)
T PTZ00186 537 RDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMEN-PNVAKDDLAAATDKLQK 614 (657)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999753 578999999999999999999984 33467999999999999
Q ss_pred HHHHHHHHHhcC
Q psy7639 2540 SCMPLMSKMHGG 2551 (2568)
Q Consensus 2540 ~~~pi~~r~~e~ 2551 (2568)
.+.++..+++..
T Consensus 615 ~~~~~~~~~~~~ 626 (657)
T PTZ00186 615 AVMECGRTEYQQ 626 (657)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-97 Score=996.02 Aligned_cols=554 Identities=49% Similarity=0.794 Sum_probs=523.6
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
++++||.+|++++.+||+||++++|||||++|+|+. ...+++||.++. .+|.+.+.+ .+ ..|+|+||+||+|+
T Consensus 46 ~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~i--~~--~~~~peei~a~iL~ 119 (653)
T PRK13411 46 GDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQI--RG--RNYTPQEISAMILQ 119 (653)
T ss_pred CCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEEE--CC--EEECHHHHHHHHHH
Confidence 578999999999999999999999999999999974 456899999984 455555555 33 67999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|+.++|.+|.+|||||||||++.||+||++||++|||+|++||||||||||+||+.+.. .++++||||||||||
T Consensus 120 ~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~-~~~~vlV~DlGgGT~ 198 (653)
T PRK13411 120 KLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQD-QEQLILVFDLGGGTF 198 (653)
T ss_pred HHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccccC-CCCEEEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999999999999999999999997642 467899999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
||||+++.+| .++|++++||.+|||+|||++|++||+++|++++++|++.++++++||+.+||+||+.||++.++.+++
T Consensus 199 dvsi~~~~~~-~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i 277 (653)
T PRK13411 199 DVSILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINL 277 (653)
T ss_pred EEEEEEEeCC-EEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCC
Q psy7639 2225 DALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 2300 (2568)
Q Consensus 2225 ~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~ 2300 (2568)
++++.+ .++.+.|||++||++|+|++++++++|+++|+++++++++|+.|+|||||||||+||+.|+++|+++++.
T Consensus 278 ~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~ 357 (653)
T PRK13411 278 PFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPD 357 (653)
T ss_pred eeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcC
Confidence 987643 5799999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred CCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEE
Q psy7639 2301 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTI 2380 (2568)
Q Consensus 2301 ~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i 2380 (2568)
.++|||||||+|||+||++|++ .++++.+.|++|++||+++.+|.|.+|||||++||++++++|+|..|+|+.+.|
T Consensus 358 ~~~npdeaVA~GAAi~aa~l~~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i 433 (653)
T PRK13411 358 RSVNPDEAVALGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEI 433 (653)
T ss_pred CCCCchHHHHHHHHHHHHhhcC----CccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEE
Confidence 9999999999999999999998 378999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHH
Q psy7639 2381 QVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIN 2460 (2568)
Q Consensus 2381 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~ 2460 (2568)
+|||||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|++.+..||++..+++.+. .+||++++++|++
T Consensus 434 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~ 512 (653)
T PRK13411 434 HVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQ 512 (653)
T ss_pred EEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888764 6799999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Q psy7639 2461 DAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 2540 (2568)
Q Consensus 2461 ~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~ 2540 (2568)
++.+|+++|++++++++++|+||+|+|.+|+.|++....+++++|+++++.|++.++||+++ +++.++|++++++|++.
T Consensus 513 ~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~ 591 (653)
T PRK13411 513 EAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQA 591 (653)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987668999999999999999999999984 46899999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy7639 2541 CMPLMSKMHGGAS 2553 (2568)
Q Consensus 2541 ~~pi~~r~~e~~g 2553 (2568)
+.|+..++|+++|
T Consensus 592 ~~~i~~~~y~~~~ 604 (653)
T PRK13411 592 LLAIGAEVYQQGG 604 (653)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999987644
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-96 Score=987.01 Aligned_cols=552 Identities=46% Similarity=0.756 Sum_probs=516.7
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEE-ecCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV-NDCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
++++||.+|++++.+||+||++++|||||++|+| ++...+++||.++ +.+|...+.+.. ..+.|+||||+||+|+
T Consensus 46 ~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~~--~~~~~speel~a~iL~ 121 (668)
T PRK13410 46 GELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPR--LEREFAPEELSAMILR 121 (668)
T ss_pred CCEEECHHHHHhhHhCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEec--CCeEEcHHHHHHHHHH
Confidence 5789999999999999999999999999999977 5666789999997 456666666543 3478999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|+.++|.+|++|||||||||++.||+||++||++|||+|++||||||||||+||+++. .++++||||||||||
T Consensus 122 ~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~ 199 (668)
T PRK13410 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTF 199 (668)
T ss_pred HHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--CCCEEEEEECCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999764 468999999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
||||+++.+| .|+|++++||.+|||+|||++|++||+++|.+++++|++.+++++++|+.+||+||+.||.+.++.+++
T Consensus 200 Dvsv~~~~~g-~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i 278 (668)
T PRK13410 200 DVSLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISL 278 (668)
T ss_pred EEEEEEEcCC-eEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCC
Q psy7639 2225 DALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 2300 (2568)
Q Consensus 2225 ~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~ 2300 (2568)
++++.+ .++..+|||++||++|+++++++..+|+++|++|++++++|+.|+|||||||||+||++|+++| ++++.
T Consensus 279 ~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~ 357 (668)
T PRK13410 279 PFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPN 357 (668)
T ss_pred eeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcc
Confidence 988754 4789999999999999999999999999999999999999999999999999999999999999 57788
Q ss_pred CCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEE
Q psy7639 2301 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTI 2380 (2568)
Q Consensus 2301 ~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i 2380 (2568)
.++|||||||+|||+||+++++ .++++.+.|++|++||+++.+|.+.+|||||++||++++.+|+|..|||+.+.|
T Consensus 358 ~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i 433 (668)
T PRK13410 358 QNVNPDEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEI 433 (668)
T ss_pred cCCCCchHHHHhHHHHHHhhcc----cccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEE
Confidence 9999999999999999999998 578999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHH
Q psy7639 2381 QVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIN 2460 (2568)
Q Consensus 2381 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~ 2460 (2568)
+|||||+.++.+|..||+|.|+|+||+|+|.++|+|+|++|.||+|+|++.++.||++..++|... .+||++++++|++
T Consensus 434 ~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~ 512 (668)
T PRK13410 434 HVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQ 512 (668)
T ss_pred EEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988765 6799999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCCHHHHHHHHHHHHHHHHHhhcCC-ccCHHHHHHHHH
Q psy7639 2461 DAERYKDEDERQKERISARNNLEAYVFNVKQALDN----AGNKLTESEKSRCREECDATLKWLDNNT-LADKEEYQDKLQ 2535 (2568)
Q Consensus 2461 ~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~----~~~~l~~~ek~~i~~~l~e~~~WL~~~~-~a~~ee~~~k~~ 2535 (2568)
++.+|.++|+.+++++++||++|+|+|++|++|.+ +...+++++|++++..|++.++||++++ ..-++.|+++++
T Consensus 513 ~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~ 592 (668)
T PRK13410 513 EAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQE 592 (668)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999975 3378899999999999999999998753 334556777788
Q ss_pred HHHHHHHHHHHHHhc
Q psy7639 2536 QLQKSCMPLMSKMHG 2550 (2568)
Q Consensus 2536 ~L~~~~~pi~~r~~e 2550 (2568)
+|..+..|+..|..+
T Consensus 593 ~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 593 ALYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888777777
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-95 Score=983.31 Aligned_cols=550 Identities=51% Similarity=0.824 Sum_probs=523.4
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
++++||.+|++++.+||+||++++|||||++|+|+.++...++|||.++. .+|.+.+.+ .+ +.|+||||+||+|+
T Consensus 85 ~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~speel~a~iL~ 160 (663)
T PTZ00400 85 GQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA--QG--KKYSPSQIGAFVLE 160 (663)
T ss_pred CCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEE--CC--EEECHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999984 556565554 33 68999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|+.++|.+|++|||||||||++.||+||++||++|||+|++|||||||||++||+.+. .++++||||||||||
T Consensus 161 ~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~ 238 (663)
T PTZ00400 161 KMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN--DGKTIAVYDLGGGTF 238 (663)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC--CCcEEEEEeCCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999998764 468999999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
||||+++.+| .++|++++||.+|||+|||++|++||+++|+++++.|+..+++++++|+.+||+||+.||.+.++.+++
T Consensus 239 DvSv~~~~~g-~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i 317 (663)
T PTZ00400 239 DISILEILGG-VFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINL 317 (663)
T ss_pred EEEEEEecCC-eeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 9999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCC
Q psy7639 2225 DALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 2300 (2568)
Q Consensus 2225 ~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~ 2300 (2568)
++++.+ .||.++|||++||++|++++++++++|+++|+++++++++|+.|+|||||||||+||++|+++| ++++.
T Consensus 318 ~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~ 396 (663)
T PTZ00400 318 PFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPS 396 (663)
T ss_pred EeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcc
Confidence 988754 5899999999999999999999999999999999999999999999999999999999999999 46788
Q ss_pred CCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEE
Q psy7639 2301 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTI 2380 (2568)
Q Consensus 2301 ~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i 2380 (2568)
.++|||||||+|||+||+++++ .++++.+.|++|+++|++..+|.|.++||||++||++++.+|+|..|+|+.+.|
T Consensus 397 ~~~npdeaVA~GAAi~aa~l~~----~~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i 472 (663)
T PTZ00400 397 KGVNPDEAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGI 472 (663)
T ss_pred cCCCCccceeeccHHHHHhhcC----CccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEE
Confidence 9999999999999999999998 468899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHH
Q psy7639 2381 QVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIN 2460 (2568)
Q Consensus 2381 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~ 2460 (2568)
+||||++..+.+|..||+|.|.|+||+|.|.++|+|+|.+|.||+|+|++.++.||+...++|+.. .+||.++++++++
T Consensus 473 ~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~ 551 (663)
T PTZ00400 473 KVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVK 551 (663)
T ss_pred EEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998865 5799999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Q psy7639 2461 DAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 2540 (2568)
Q Consensus 2461 ~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~ 2540 (2568)
++.+|+++|+.++++.+++|+||+|+|++|+.|.++...+++++++++++.+++.++||+++ +.++|++++++|+++
T Consensus 552 ~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~ 628 (663)
T PTZ00400 552 EAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEA 628 (663)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987668999999999999999999999975 588999999999999
Q ss_pred HHHHHHHHhcC
Q psy7639 2541 CMPLMSKMHGG 2551 (2568)
Q Consensus 2541 ~~pi~~r~~e~ 2551 (2568)
+.++..++|+.
T Consensus 629 l~~l~~k~y~~ 639 (663)
T PTZ00400 629 SWKISQQAYKQ 639 (663)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-95 Score=979.92 Aligned_cols=553 Identities=47% Similarity=0.778 Sum_probs=520.9
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
++++||++|++++.+||.||++++|||||++|+| ++...+.|||.++. .+|...+.+...+ ..|+|+||++|+|+
T Consensus 83 ~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~ 158 (673)
T PLN03184 83 GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLR 158 (673)
T ss_pred CCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHH
Confidence 4689999999999999999999999999999987 56678889999984 4566666554433 68999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|+.++|.+|.+||||||+||++.||+||++||++|||+|++||||||||||+||+.+. .++++||||||||||
T Consensus 159 ~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~ 236 (673)
T PLN03184 159 KLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTF 236 (673)
T ss_pred HHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999998764 467899999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
||||+++.+| .++|++++||.+|||+|||+.|++|+.++|+++++.|+..+++++.||+.+||+||+.||.+.++.+++
T Consensus 237 DvSi~~~~~~-~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i 315 (673)
T PLN03184 237 DVSVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISL 315 (673)
T ss_pred EEEEEEecCC-EEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEE
Confidence 9999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccC----CcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCC
Q psy7639 2225 DALYD----GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 2300 (2568)
Q Consensus 2225 ~~~~~----~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~ 2300 (2568)
+++.. +.++..+|||++||++|+++++++..+|+++|++++++++||+.|+|||||||||+||++|+++| ++++.
T Consensus 316 ~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~ 394 (673)
T PLN03184 316 PFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPN 394 (673)
T ss_pred EeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcc
Confidence 87753 36899999999999999999999999999999999999999999999999999999999999999 57788
Q ss_pred CCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEE
Q psy7639 2301 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTI 2380 (2568)
Q Consensus 2301 ~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i 2380 (2568)
.++|||||||+|||+||++|++ +++++.+.|++|++||++..+|.+.++||||++||++++++|+|..|+|+.+.|
T Consensus 395 ~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i 470 (673)
T PLN03184 395 VTVNPDEVVALGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEI 470 (673)
T ss_pred cccCcchHHHHHHHHHHHHhcc----CccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEE
Confidence 9999999999999999999998 577899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHH
Q psy7639 2381 QVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIN 2460 (2568)
Q Consensus 2381 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~ 2460 (2568)
+|||||+..+.+|..||+|.|+++||+|+|.++|+|+|.+|.||+|+|++.++.|+++..++|... .+||++++++|++
T Consensus 471 ~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~ 549 (673)
T PLN03184 471 NVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQ 549 (673)
T ss_pred EEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998864 6799999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Q psy7639 2461 DAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 2540 (2568)
Q Consensus 2461 ~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~ 2540 (2568)
++.+++.+|+.++++++++|+||+|||++|+.|.++...+++++++++++.|++.++||+++ +.+++++++++|.+.
T Consensus 550 ~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~ 626 (673)
T PLN03184 550 EAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQE 626 (673)
T ss_pred HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986668899999999999999999999975 578999999999999
Q ss_pred HHHHHHHHhcCCCC
Q psy7639 2541 CMPLMSKMHGGASA 2554 (2568)
Q Consensus 2541 ~~pi~~r~~e~~g~ 2554 (2568)
+.++..++|.++|+
T Consensus 627 l~~l~~~~~~~~~~ 640 (673)
T PLN03184 627 VMQIGQSLYNQPGA 640 (673)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999998876443
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-93 Score=954.51 Aligned_cols=609 Identities=45% Similarity=0.702 Sum_probs=560.4
Q ss_pred HHHhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcc
Q psy7639 1379 KERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDM 1453 (2568)
Q Consensus 1379 ~~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~ 1453 (2568)
...||||||++|+|.++.+.+ |..|.++|||+|+|... +|+.|++++..||.+|++++||+||+.++|+.++..+
T Consensus 31 GIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~ 110 (657)
T PTZ00186 31 GVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDI 110 (657)
T ss_pred EEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhh
Confidence 346999999999999988777 89999999999999644 6999999999999999999999999999999999999
Q ss_pred cccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy7639 1454 KHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGL 1533 (2568)
Q Consensus 1454 k~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL 1533 (2568)
+.|||.++....+ ...+.. ..++.|+|+||++++|++||+.|+.++|.++.++||||||||++.||++|++||++|||
T Consensus 111 ~~~p~~vv~~~~~-~~~i~~-~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl 188 (657)
T PTZ00186 111 KNVPYKIVRAGNG-DAWVQD-GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGL 188 (657)
T ss_pred ccCcEEEEEcCCC-ceEEEe-CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 9999999875433 233332 34688999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHH
Q psy7639 1534 NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 1613 (2568)
Q Consensus 1534 ~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~ 1613 (2568)
++++||+||||||++|+.+.. .++++||||||||||||||+++.+| .++|+++.||.+|||+|||++|++|+.++|.
T Consensus 189 ~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT~DvSil~~~~g-~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~ 265 (657)
T PTZ00186 189 NVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEIAGG-VFEVKATNGDTHLGGEDFDLALSDYILEEFR 265 (657)
T ss_pred CeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCeEEEEEEEEeCC-EEEEEEecCCCCCCchhHHHHHHHHHHHHHh
Confidence 999999999999999998653 4678999999999999999999777 8999999999999999999999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC---C-cceeeecCHHHHHHHHhHHHHHHHHHHHHHHH
Q psy7639 1614 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD---G-IDFYTKISRARFEELCSDLFRSTLQPVEKALQ 1689 (2568)
Q Consensus 1614 ~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~ 1689 (2568)
++++.++..++..+.+|+.+||+||+.||....+.+.++.... | .++..+|||++|+++|+|++++++.+++++|+
T Consensus 266 ~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~ 345 (657)
T PTZ00186 266 KTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMK 345 (657)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888999999999999999999999999998886543 2 45888999999999999999999999999999
Q ss_pred HcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccc
Q psy7639 1690 DAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG 1769 (2568)
Q Consensus 1690 ~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slG 1769 (2568)
++++.+.+|+.|+||||+||||.||++|+++|+ +.+...+||++|||+|||+||+++++. ++++++.|++|++||
T Consensus 346 ~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slg 420 (657)
T PTZ00186 346 DAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLG 420 (657)
T ss_pred HcCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeecccccc
Confidence 999999999999999999999999999999995 556678999999999999999999874 467899999999999
Q ss_pred eeecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcC
Q psy7639 1770 IETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 1849 (2568)
Q Consensus 1770 ie~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~ 1849 (2568)
|++.+|.|.+||||||+||+++++.|+|..|||+.+.|+|||||+.++.+|..||+|.|.++||.|+|.++|+|+|+||.
T Consensus 421 ie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~ 500 (657)
T PTZ00186 421 IETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDA 500 (657)
T ss_pred ceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q psy7639 1850 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTE 1929 (2568)
Q Consensus 1850 nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~ 1929 (2568)
||+|+|+|++..||++.+++|.++ +.||++||++|+++++.++.+|+.++++++++|+++.+++.++..+++. ..++.
T Consensus 501 nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 578 (657)
T PTZ00186 501 NGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSD 578 (657)
T ss_pred CCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCH
Confidence 999999999999999999999864 5699999999999999999999999999999999999999999999764 56899
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCCChhHHHHhhhhc
Q psy7639 1930 SEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQVAM 2000 (2568)
Q Consensus 1930 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~G~~A~~~~~~ 2000 (2568)
++++.+...++.+++||+.+ ..+.+.|++++++|++.+.++..++|++++++.+|...--|+...+|...
T Consensus 579 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (657)
T PTZ00186 579 AEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQQQQ 648 (657)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHH
Confidence 99999999999999999843 34679999999999999999999998877777777666667766555443
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-92 Score=959.26 Aligned_cols=549 Identities=53% Similarity=0.849 Sum_probs=521.1
Q ss_pred CCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHH
Q psy7639 1985 GDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVL 2063 (2568)
Q Consensus 1985 ~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL 2063 (2568)
++++++|++|+.++.+||.+|++++|||||++ ++.++.+.++|||.++. .+|...+.+ .+ +.|+||+|+||+|
T Consensus 45 ~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL 118 (627)
T PRK00290 45 DGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMIL 118 (627)
T ss_pred CCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHH
Confidence 45789999999999999999999999999999 67788899999999985 455555544 34 6899999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCee
Q psy7639 2064 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGT 2143 (2568)
Q Consensus 2064 ~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt 2143 (2568)
++||+.|+.++|.++.+|||||||||++.||+||++||++|||+|++|||||||||++||+.+. .++++|||||||||
T Consensus 119 ~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT 196 (627)
T PRK00290 119 QKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGT 196 (627)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999998764 46899999999999
Q ss_pred eEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEE
Q psy7639 2144 FDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE 2223 (2568)
Q Consensus 2144 ~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~ 2223 (2568)
|||||+++.++ .++|++++||.+|||+|||++|++|+.++|+++++.|++.+++++.||+.+||+||+.||.+.++.++
T Consensus 197 ~dvsv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~ 275 (627)
T PRK00290 197 FDVSILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEIN 275 (627)
T ss_pred EEEEEEEEeCC-eEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99999999988 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCC
Q psy7639 2224 IDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL 2299 (2568)
Q Consensus 2224 i~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~ 2299 (2568)
+++++.+ .++.++|||++||++|+++++++.++|+++|+++++++.+|+.|+|||||||||+||+.|+++| ++++
T Consensus 276 i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~ 354 (627)
T PRK00290 276 LPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEP 354 (627)
T ss_pred EeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCC
Confidence 9988753 6899999999999999999999999999999999999999999999999999999999999999 6778
Q ss_pred CCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEE
Q psy7639 2300 NLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVT 2379 (2568)
Q Consensus 2300 ~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~ 2379 (2568)
..++|||||||+|||++|+.+++ +++++.+.|++|+++|+++.+|.+.+|||||++||++++++|+|..|+|+.+.
T Consensus 355 ~~~~npdeava~GAa~~aa~l~~----~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~ 430 (627)
T PRK00290 355 NKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVT 430 (627)
T ss_pred CcCcCChHHHHHhHHHHHHHhcC----CccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEE
Confidence 89999999999999999999998 57889999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHH
Q psy7639 2380 IQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMI 2459 (2568)
Q Consensus 2380 i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~ 2459 (2568)
|+||||++..+.+|..||+|.|+++|++|+|.++|+|+|++|.||+|+|++.+..||+..++++... .+||++++++++
T Consensus 431 i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~ 509 (627)
T PRK00290 431 IHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMV 509 (627)
T ss_pred EEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765 579999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Q psy7639 2460 NDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 2539 (2568)
Q Consensus 2460 ~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~ 2539 (2568)
+++.++.++|+..+++.+++|+||+|+|.+|+.|++....+++++|+++++.|++.++||+++ +.++|++++++|++
T Consensus 510 ~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~ 586 (627)
T PRK00290 510 KDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQ 586 (627)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986668899999999999999999999975 68899999999999
Q ss_pred HHHHHHHHHhcC
Q psy7639 2540 SCMPLMSKMHGG 2551 (2568)
Q Consensus 2540 ~~~pi~~r~~e~ 2551 (2568)
++.|+..|++++
T Consensus 587 ~~~~~~~~~~~~ 598 (627)
T PRK00290 587 ASQKLGEAMYQQ 598 (627)
T ss_pred HHHHHHHHHHhh
Confidence 999999999863
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=945.82 Aligned_cols=549 Identities=51% Similarity=0.806 Sum_probs=518.0
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
+++++|++|++++.+||+||++++||+||++++| ++...+.|||.++. .+|.+.+.+...+ ..|+|+||++|+|+
T Consensus 46 ~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~ 121 (621)
T CHL00094 46 GDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLR 121 (621)
T ss_pred CCEEECHHHHHhHHhCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHH
Confidence 5789999999999999999999999999999976 56667889999984 4566666654333 68999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+|++.|+.++|.++.+||||||+||++.||+||++||++|||+|++|||||||||++||++.. .+.++||||||||||
T Consensus 122 ~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~ 199 (621)
T CHL00094 122 KLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTF 199 (621)
T ss_pred HHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999998764 467899999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
||||+++.+| .++|++++||.+|||+|||+.|++|++++|+++++.|+..+++++.+|+.+||+||+.||.+.++.+.+
T Consensus 200 DvSv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i 278 (621)
T CHL00094 200 DVSILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINL 278 (621)
T ss_pred EEEEEEEcCC-EEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCC
Q psy7639 2225 DALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 2300 (2568)
Q Consensus 2225 ~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~ 2300 (2568)
++++++ .++..+|||++||++|+++++++..+|+++|+++++++.+|+.|+||||+||||.||+.|+++|| +++.
T Consensus 279 ~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~ 357 (621)
T CHL00094 279 PFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPN 357 (621)
T ss_pred eecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcC
Confidence 987642 57999999999999999999999999999999999999999999999999999999999999994 6788
Q ss_pred CCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEE
Q psy7639 2301 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTI 2380 (2568)
Q Consensus 2301 ~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i 2380 (2568)
.++|||||||+|||+||+++++ .++++.+.|++|++||++..+|.+.++||||++||++++++|+|..|+|+.+.|
T Consensus 358 ~~~~pdeava~GAA~~aa~ls~----~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i 433 (621)
T CHL00094 358 QSVNPDEVVAIGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEI 433 (621)
T ss_pred cCCCchhHHHhhhHHHHHHhcC----CccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEE
Confidence 9999999999999999999998 468899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHH
Q psy7639 2381 QVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIN 2460 (2568)
Q Consensus 2381 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~ 2460 (2568)
+|||||+..+.+|..||+|.|.|+|++++|.++|+|+|++|.||+|+|++.++.||+...+++.+. .+||+++++++++
T Consensus 434 ~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~ 512 (621)
T CHL00094 434 HVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVK 512 (621)
T ss_pred EEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888754 5799999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Q psy7639 2461 DAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 2540 (2568)
Q Consensus 2461 ~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~ 2540 (2568)
++.++..+|+..+++.+++|+||+|+|.+|++|++....+++++|+++++.+++.++||+++ +.++|++++++|++.
T Consensus 513 ~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~ 589 (621)
T CHL00094 513 EAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKA 589 (621)
T ss_pred HHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986557899999999999999999999975 468999999999999
Q ss_pred HHHHHHHHhc
Q psy7639 2541 CMPLMSKMHG 2550 (2568)
Q Consensus 2541 ~~pi~~r~~e 2550 (2568)
+.|+..+++.
T Consensus 590 ~~~~~~kl~~ 599 (621)
T CHL00094 590 LMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHh
Confidence 9999999887
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-91 Score=941.98 Aligned_cols=547 Identities=55% Similarity=0.858 Sum_probs=518.8
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 2065 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~ 2065 (2568)
+++++|.+|++++.+||++|++++|||||++++ .++...+++||.+..++|.+.+.+. + +.|+||+|+||+|++
T Consensus 44 ~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~~~~~~~~~~v~~~~~~~~~~v~--~--~~~~peel~a~~L~~ 117 (595)
T TIGR02350 44 GERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGGDVRVKVD--G--KEYTPQEISAMILQK 117 (595)
T ss_pred CCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HHHHHhhcCCeeEEcCCCceEEEEC--C--EEecHHHHHHHHHHH
Confidence 478999999999999999999999999999994 4777889999997777777776663 3 689999999999999
Q ss_pred HHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeE
Q psy7639 2066 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 2145 (2568)
Q Consensus 2066 lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~d 2145 (2568)
||+.|+.++|.++.+||||||+||++.||+||++||++|||+|++|||||||||++||+.+. ..++++|||||||||||
T Consensus 118 l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~d 196 (595)
T TIGR02350 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFD 196 (595)
T ss_pred HHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999998763 24789999999999999
Q ss_pred EEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEEe
Q psy7639 2146 VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 2225 (2568)
Q Consensus 2146 vsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i~ 2225 (2568)
|||+++.+| .++|++++||.+|||+|||++|++||.++|+++++.|++.+++++.||+.+||+||+.||.+.++.++++
T Consensus 197 vsv~~~~~~-~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~ 275 (595)
T TIGR02350 197 VSILEIGDG-VFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLP 275 (595)
T ss_pred EEEEEecCC-eEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEee
Confidence 999999988 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCC
Q psy7639 2226 ALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL 2301 (2568)
Q Consensus 2226 ~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~ 2301 (2568)
+++.+ .++.++|||++||++|+++++++.++++++|+++++++.+|+.|+|||||||||+||+.|+++|| .++..
T Consensus 276 ~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~ 354 (595)
T TIGR02350 276 FITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNK 354 (595)
T ss_pred ecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccC
Confidence 88653 67999999999999999999999999999999999999999999999999999999999999995 78889
Q ss_pred CCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEE
Q psy7639 2302 SINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQ 2381 (2568)
Q Consensus 2302 ~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~ 2381 (2568)
++|||||||+|||++||++++ .++++.+.|++|+++|++..+|.+.++||||++||++++++|+|..|+|+.+.|+
T Consensus 355 ~~~pdeava~GAa~~aa~l~~----~~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~ 430 (595)
T TIGR02350 355 SVNPDEVVAIGAAIQGGVLKG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIH 430 (595)
T ss_pred CcCcHHHHHHHHHHHHHHhcC----CcccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEE
Confidence 999999999999999999998 3788999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHH
Q psy7639 2382 VFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIND 2461 (2568)
Q Consensus 2382 v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~ 2461 (2568)
||||++..+.+|..||+|.|+++|+++.|.++|+|+|++|.||+|+|++.+..+|++..++++.. .+||++++++++++
T Consensus 431 i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~ 509 (595)
T TIGR02350 431 VLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKE 509 (595)
T ss_pred EEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988875 57999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHH
Q psy7639 2462 AERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSC 2541 (2568)
Q Consensus 2462 ~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~ 2541 (2568)
+.++..+|+.++++.+++|+||+|||.+|+.|.+....+++++++++++.+++.++||+++ +.++|++++++|++++
T Consensus 510 ~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~ 586 (595)
T TIGR02350 510 AEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQAL 586 (595)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976667899999999999999999999976 6789999999999999
Q ss_pred HHHHHHHh
Q psy7639 2542 MPLMSKMH 2549 (2568)
Q Consensus 2542 ~pi~~r~~ 2549 (2568)
.++..++|
T Consensus 587 ~~~~~~~~ 594 (595)
T TIGR02350 587 QKLAEAMY 594 (595)
T ss_pred HHHHHHHh
Confidence 99998875
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-91 Score=930.18 Aligned_cols=543 Identities=41% Similarity=0.643 Sum_probs=508.6
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
++++||..|+.++.++|.+|++++|||||++++|+. . .+.+||.++. .+|.+.+.+. + ..|+|+||+|++|+
T Consensus 43 ~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~ 115 (599)
T TIGR01991 43 GGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILK 115 (599)
T ss_pred CCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHH
Confidence 478999999999999999999999999999998854 3 6789999874 4566666653 2 37999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|++++|.++.+|||||||||++.||+||++||++|||+|++|||||||||++|++.+. .++++||||||||||
T Consensus 116 ~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~ 193 (599)
T TIGR01991 116 KLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTF 193 (599)
T ss_pred HHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999998764 468899999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
||||+++.+| .++|++++||.+|||+|||+.|++||.++ ++.+...+++++++|+.+||++|+.||.+.++.+.+
T Consensus 194 DvSi~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i 268 (599)
T TIGR01991 194 DVSILKLTKG-VFEVLATGGDSALGGDDFDHALAKWILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDF 268 (599)
T ss_pred EEEEEEEcCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 9999999988 89999999999999999999999999964 566777899999999999999999999999999999
Q ss_pred ecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCCCCC
Q psy7639 2225 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSIN 2304 (2568)
Q Consensus 2225 ~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~n 2304 (2568)
+. +|.++.++|||++||++|+++++++.++|+++|+++++++.+|+.|+||||+||||+||++|+++|+ .++..++|
T Consensus 269 ~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~n 345 (599)
T TIGR01991 269 TL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDID 345 (599)
T ss_pred EE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCC
Confidence 75 7899999999999999999999999999999999999999999999999999999999999999995 56778999
Q ss_pred cchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEee
Q psy7639 2305 PDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 2384 (2568)
Q Consensus 2305 pdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ 2384 (2568)
||||||+|||+||++|++ .+..+++.+.|++|++||+++.+|.+.++|||||+||++++..|+|..|+|+.+.|+|||
T Consensus 346 pdeaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~q 423 (599)
T TIGR01991 346 PDQVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQ 423 (599)
T ss_pred CcHHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEe
Confidence 999999999999999997 446678999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHh
Q psy7639 2385 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 2464 (2568)
Q Consensus 2385 ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~ 2464 (2568)
||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|++.++.||+++.+.|.+. .+||+++|++|++++.+
T Consensus 424 Ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~ 502 (599)
T TIGR01991 424 GERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFK 502 (599)
T ss_pred ecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988765 56999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHH
Q psy7639 2465 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPL 2544 (2568)
Q Consensus 2465 ~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi 2544 (2568)
++.+|+..++..+++|++|+|+|++++.+.+....+++++|++++..+++.++||+++ +.++++++.++|++++.++
T Consensus 503 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~ 579 (599)
T TIGR01991 503 HAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNF 579 (599)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987667899999999999999999999875 5789999999999999999
Q ss_pred HHHHhcC
Q psy7639 2545 MSKMHGG 2551 (2568)
Q Consensus 2545 ~~r~~e~ 2551 (2568)
..+.++.
T Consensus 580 ~~~~~~~ 586 (599)
T TIGR01991 580 AARRMDR 586 (599)
T ss_pred HHHHHhh
Confidence 9876653
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-90 Score=938.06 Aligned_cols=600 Identities=67% Similarity=1.027 Sum_probs=565.2
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH 1455 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k~ 1455 (2568)
.||||||++|++.++...+ |..|+|.|||+|+|.+. +|+.|+.++..||.+|++++||+||+.++|+.++..+++
T Consensus 10 DlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~ 89 (653)
T PTZ00009 10 DLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKH 89 (653)
T ss_pred EeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhc
Confidence 5999999999999988777 99999999999999644 699999999999999999999999999999999999999
Q ss_pred cccEEeeCC-CCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1456 WPFTVVNDC-SKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1456 ~~~~~~~~~-~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
|||.++... +.+.+.|.+.+..+.|+|+||++++|++||+.|+.++|.++.++||||||||++.||+++++||++|||+
T Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 169 (653)
T PTZ00009 90 WPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLN 169 (653)
T ss_pred CceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCc
Confidence 999988653 4567778887777899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++|++||+|||++|+.......++++|||||||||||+||+++.++ .++|+++.|+.++||.+||++|++|+.++|.+
T Consensus 170 v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~-~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~ 248 (653)
T PTZ00009 170 VLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDFKR 248 (653)
T ss_pred eeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCC-eEEEEEecCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764445688999999999999999999766 89999999999999999999999999999998
Q ss_pred hh-cCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Q psy7639 1615 KY-KKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKL 1693 (2568)
Q Consensus 1615 ~~-~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~ 1693 (2568)
++ +.++..+++.+.+|+.+||++|+.||...++.+.++.++++.++.++|||++||++|+|++++++.+|+++|+++++
T Consensus 249 ~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~ 328 (653)
T PTZ00009 249 KNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGM 328 (653)
T ss_pred hccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77 36677789999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccceeec
Q psy7639 1694 DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 1773 (2568)
Q Consensus 1694 ~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie~~ 1773 (2568)
.+.+|+.|+||||+||+|+||++|+++|+++.+...+||++|||+|||++|+++++.....++++.++|++|++||+++.
T Consensus 329 ~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~ 408 (653)
T PTZ00009 329 DKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETA 408 (653)
T ss_pred CHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccCcccc
Confidence 99999999999999999999999999998778888999999999999999999998655567789999999999999999
Q ss_pred CcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCeeE
Q psy7639 1774 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGIL 1853 (2568)
Q Consensus 1774 ~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nGiL 1853 (2568)
+|.+.+|||||++||+++++.|++..|+|+.+.|.||||++..+++|..||+|.+.++||.|+|.++|+|+|++|.||+|
T Consensus 409 ~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil 488 (653)
T PTZ00009 409 GGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGIL 488 (653)
T ss_pred CCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCHHH
Q psy7639 1854 NVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDN--AGNKLTESE 1931 (2568)
Q Consensus 1854 ~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~--~~~~~~~~~ 1931 (2568)
+|++.+..||++..++|.+..++||+++++++.+++.++..+|+.++++.++||+||+++|++++.|++ +...+++++
T Consensus 489 ~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee 568 (653)
T PTZ00009 489 NVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSD 568 (653)
T ss_pred EEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHH
Confidence 999999999999999998777889999999999999999999999999999999999999999999964 678899999
Q ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCCC
Q psy7639 1932 KSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGG 1981 (2568)
Q Consensus 1932 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 1981 (2568)
++++.+.++++++||+++..++.++|++|+++|++.+.|+..++|++++|
T Consensus 569 ~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~ 618 (653)
T PTZ00009 569 KATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGG 618 (653)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999998888899999999999999999999998866554
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-90 Score=933.51 Aligned_cols=588 Identities=47% Similarity=0.759 Sum_probs=547.7
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |.+|++.|||+|+|... +|+.|+.++..||.+|++++|||||+.++|+. ...+
T Consensus 8 DlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~--~~~~ 85 (653)
T PRK13411 8 DLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE--EERS 85 (653)
T ss_pred EeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh--HHhh
Confidence 5999999999999988777 99999999999999532 69999999999999999999999999998875 3468
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
++||.++.+..+ .+.+.+ .++.|+|++|++++|++|++.|+.++|.++.++||||||||++.||++|++||++|||+
T Consensus 86 ~~~~~~v~~~~~-~~~~~i--~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 162 (653)
T PRK13411 86 RVPYTCVKGRDD-TVNVQI--RGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162 (653)
T ss_pred cCCceEEecCCC-ceEEEE--CCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 999999876433 333444 36789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++|++||+|||++|+.... ..+.++||||||||||||||+++.+| .++|+++.|+.+|||.+||+.|++|+.++|.+
T Consensus 163 v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dvsi~~~~~~-~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~ 240 (653)
T PRK13411 163 VLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENFQQ 240 (653)
T ss_pred eEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEEEEEEEeCC-EEEEEEEecCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998653 24678999999999999999999766 89999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC----CcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD----GIDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+++.++..++..+.+|+.+||++|+.||....+.+.++++.. +.++.+.|||++|+++|+|+++++..+|+++|++
T Consensus 241 ~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 320 (653)
T PRK13411 241 QEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKD 320 (653)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888889999999999999999999999999998887543 3568889999999999999999999999999999
Q ss_pred cCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccce
Q psy7639 1691 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 1770 (2568)
Q Consensus 1691 a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGi 1770 (2568)
+++.+.+|+.|+||||+||+|+||+.|+++|+++.+..++||++|||+|||++|+++++. .+++++.|++|++||+
T Consensus 321 a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi 396 (653)
T PRK13411 321 AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396 (653)
T ss_pred cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeE
Confidence 999999999999999999999999999999987788889999999999999999999874 5689999999999999
Q ss_pred eecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCC
Q psy7639 1771 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDAN 1850 (2568)
Q Consensus 1771 e~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~n 1850 (2568)
++.+|.|.+|||||++||+++++.|++..|+|+.+.|.|||||+.++.+|..||.|.+.++||+|+|.++|+|+|++|.|
T Consensus 397 ~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 476 (653)
T PRK13411 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVN 476 (653)
T ss_pred EecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q psy7639 1851 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTES 1930 (2568)
Q Consensus 1851 GiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~ 1930 (2568)
|+|+|++.+..||++..++|++. +.||++|+++|+++++++..+|+.++++.++||++|+++|.+++.|++....++++
T Consensus 477 Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~ 555 (653)
T PRK13411 477 GILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEE 555 (653)
T ss_pred CeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 99999999999999999999864 67999999999999999999999999999999999999999999998778899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCCC
Q psy7639 1931 EKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGG 1981 (2568)
Q Consensus 1931 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 1981 (2568)
+++++.+.++++++||.++ .++.++|++++++|++.+.|+..++|+++++
T Consensus 556 er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 556 LKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999874 4689999999999999999999999976554
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-90 Score=924.02 Aligned_cols=540 Identities=40% Similarity=0.640 Sum_probs=502.4
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
+.+++|..|+.++.++|.+|++++|||||++++| ++.....+||.++. .+|.+.+.+. + ..|+|+||++++|+
T Consensus 62 ~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~ 135 (616)
T PRK05183 62 DGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILK 135 (616)
T ss_pred CCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHH
Confidence 4589999999999999999999999999999987 45556789999874 4677766653 2 37999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|++++|.++.+|||||||||++.||++|++||++|||+|++|||||||||++|++++. .++++||||||||||
T Consensus 136 ~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~ 213 (616)
T PRK05183 136 ALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTF 213 (616)
T ss_pred HHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999998764 468899999999999
Q ss_pred EEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEE
Q psy7639 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224 (2568)
Q Consensus 2145 dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i 2224 (2568)
||||+++.+| .|+|++++||.+|||+|||+.|++||.++| +.+...+++++++|+.+||+||+.||.+.++.+.+
T Consensus 214 DvSv~~~~~~-~~evlat~gd~~lGG~d~D~~l~~~~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i 288 (616)
T PRK05183 214 DISILRLSKG-VFEVLATGGDSALGGDDFDHLLADWILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV 288 (616)
T ss_pred EEEEEEeeCC-EEEEEEecCCCCcCHHHHHHHHHHHHHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 9999999988 899999999999999999999999999866 44555789999999999999999999999999998
Q ss_pred ecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCCCCC
Q psy7639 2225 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSIN 2304 (2568)
Q Consensus 2225 ~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~n 2304 (2568)
+. +...|||++||++|+++++++.++|+++|+++++++.+|+.|+|||||||||+||+.|+++|| +++..++|
T Consensus 289 ~~------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~n 361 (616)
T PRK05183 289 AL------WQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSID 361 (616)
T ss_pred ec------CCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCC
Confidence 53 233599999999999999999999999999999999999999999999999999999999995 56678999
Q ss_pred cchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEee
Q psy7639 2305 PDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 2384 (2568)
Q Consensus 2305 pdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ 2384 (2568)
||||||+|||+||+++++ .+.++++.+.|++|++|||++.+|.+.++||||++||+++++.|+|..|+|+.+.|+|||
T Consensus 362 pdeaVA~GAAi~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~q 439 (616)
T PRK05183 362 PDKVVAIGAAIQADILAG--NKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQ 439 (616)
T ss_pred chHHHHHHHHHHHHHhcc--ccccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEec
Confidence 999999999999999998 345678999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHh
Q psy7639 2385 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 2464 (2568)
Q Consensus 2385 ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~ 2464 (2568)
||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|++.++.||++..++|.+. .+||+++|++|++++.+
T Consensus 440 Ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~ 518 (616)
T PRK05183 440 GERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMS 518 (616)
T ss_pred ccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999765 56999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHH
Q psy7639 2465 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPL 2544 (2568)
Q Consensus 2465 ~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi 2544 (2568)
++.+|+..+++.+++|++|.|+|.+++.+.+.+..+++++|++++..+++.++||+.+ +.++|++++++|++.+.++
T Consensus 519 ~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~ 595 (616)
T PRK05183 519 HAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEF 595 (616)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999977667899999999999999999999864 6889999999999999999
Q ss_pred HHHHhcC
Q psy7639 2545 MSKMHGG 2551 (2568)
Q Consensus 2545 ~~r~~e~ 2551 (2568)
..+.++.
T Consensus 596 ~~~~~~~ 602 (616)
T PRK05183 596 AARRMDR 602 (616)
T ss_pred HHHHHhc
Confidence 9877653
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-91 Score=915.87 Aligned_cols=528 Identities=58% Similarity=0.851 Sum_probs=506.1
Q ss_pred CCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHHHHH
Q psy7639 1987 MPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKM 2066 (2568)
Q Consensus 1987 ~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~l 2066 (2568)
++++|..|++++..||.||++.+||+||+.- ....+.+...+ +.|+|+||++|+|+||
T Consensus 51 ~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~--------------------~~~~~~~~~~~--~~~~~eeisa~~L~~l 108 (579)
T COG0443 51 EVLVGQAAKRQAVDNPENTIFSIKRKIGRGS--------------------NGLKISVEVDG--KKYTPEEISAMILTKL 108 (579)
T ss_pred CEEecHHHHHHhhhCCcceEEEEehhcCCCC--------------------CCCcceeeeCC--eeeCHHHHHHHHHHHH
Confidence 6999999999999999999999999999870 11122333334 7899999999999999
Q ss_pred HHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeEE
Q psy7639 2067 KETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDV 2146 (2568)
Q Consensus 2067 k~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~dv 2146 (2568)
|+.||.++|.+|+++||||||||++.||++|++||++|||+|+||||||||||++||+++. .+.+|||||||||||||
T Consensus 109 k~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDv 186 (579)
T COG0443 109 KEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDV 186 (579)
T ss_pred HHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999887 67899999999999999
Q ss_pred EEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEEec
Q psy7639 2147 SILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDA 2226 (2568)
Q Consensus 2147 sil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i~~ 2226 (2568)
|||++.+| +|+|++|+||++|||+|||.+|++|++++|++++++|++.++++++||+.+||++|+.||+..++.+++++
T Consensus 187 Sll~~~~g-~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~ 265 (579)
T COG0443 187 SLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPS 265 (579)
T ss_pred EEEEEcCC-EEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCCCCCcc
Q psy7639 2227 LYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPD 2306 (2568)
Q Consensus 2227 ~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~npd 2306 (2568)
+..+.++..+|||++||+++.+++.|++.+++++|+++++++.+|+.|+||||+||||+|++.|+++|+ +++.+++|||
T Consensus 266 ~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpd 344 (579)
T COG0443 266 IGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPD 344 (579)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 9999999999
Q ss_pred hhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecC
Q psy7639 2307 EAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGE 2386 (2568)
Q Consensus 2307 eava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge 2386 (2568)
|+||+|||+||+.+++. ..+++++|++|+++|+++.++.++++|+||+++|.+++..|+|..|+|+.+.++++|||
T Consensus 345 eava~GAa~qa~~l~~~----~~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge 420 (579)
T COG0443 345 EAVALGAAIQAAVLSGE----VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGE 420 (579)
T ss_pred HHHHHHHHHHHHhhcCc----ccCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecc
Confidence 99999999999999983 33999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhh
Q psy7639 2387 RAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466 (2568)
Q Consensus 2387 ~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~ 2466 (2568)
+.++.+|.++|.|++.++||+|+|.|+|+|+|++|+||+++|++.++.||++..++|....+ |++++|++|++++..++
T Consensus 421 ~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~ 499 (579)
T COG0443 421 REMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANA 499 (579)
T ss_pred hhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 99999999999999999
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHH
Q psy7639 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMS 2546 (2568)
Q Consensus 2467 ~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi~~ 2546 (2568)
+.|++.++..+++|.++.+++.++..|.+.. ++++++++++...+.+++.||++ + .++++.+.++|+....++..
T Consensus 500 ~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~ 574 (579)
T COG0443 500 ALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAE 574 (579)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877 99999999999999999999987 2 88999999999999999998
Q ss_pred HHhc
Q psy7639 2547 KMHG 2550 (2568)
Q Consensus 2547 r~~e 2550 (2568)
++++
T Consensus 575 ~~~~ 578 (579)
T COG0443 575 KKYQ 578 (579)
T ss_pred HHhc
Confidence 8774
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-89 Score=921.10 Aligned_cols=585 Identities=48% Similarity=0.773 Sum_probs=546.4
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |..|+|.|||+|+|... +|+.|++++..||.+|++++|||||+.++|+.++...+
T Consensus 47 DlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~ 126 (663)
T PTZ00400 47 DLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQK 126 (663)
T ss_pred EECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhc
Confidence 4999999999999888777 99999999999999532 69999999999999999999999999999999999999
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
+|||.++....+ ...+.+ .++.|+|++|++++|++||+.|+.++|.++.++||||||||++.||++|++||++|||+
T Consensus 127 ~~p~~~~~~~~~-~~~~~~--~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 203 (663)
T PTZ00400 127 ILPYKIVRASNG-DAWIEA--QGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLD 203 (663)
T ss_pred cCCeEEEecCCC-ceEEEE--CCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 999999876432 333444 46789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++||+||+|||++|+.+. ..++++||||||||||||||+++.+| .++|+++.|+.++||.+||+.|++||.++|++
T Consensus 204 v~~li~EptAAAlay~~~~--~~~~~vlV~DlGgGT~DvSv~~~~~g-~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 204 VLRIINEPTAAALAFGMDK--NDGKTIAVYDLGGGTFDISILEILGG-VFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred eEEEeCchHHHHHHhcccc--CCCcEEEEEeCCCCeEEEEEEEecCC-eeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999865 34678999999999999999999776 89999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCC----cceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+++.++..++..+.+|+.+||++|+.||....+.+.++.+..+ .++.++|||++|+++|+|++++++.+|+++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888899999999999999999999998888888765433 468899999999999999999999999999999
Q ss_pred cCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccce
Q psy7639 1691 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 1770 (2568)
Q Consensus 1691 a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGi 1770 (2568)
+++.+.+|+.|+||||+||+|+||++|+++|+ ..+...+||+++||+|||++|+++++. .+++++.|++|++||+
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi 435 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGI 435 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcCC----ccceEEEeccccceEE
Confidence 99999999999999999999999999999995 567788999999999999999999874 4678999999999999
Q ss_pred eecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCC
Q psy7639 1771 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDAN 1850 (2568)
Q Consensus 1771 e~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~n 1850 (2568)
++.+|.|.+||||||+||+++++.|++..|+|+.+.|.||||++.++.+|..||+|.+.++||.|+|.++|+|+|++|.|
T Consensus 436 ~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~ 515 (663)
T PTZ00400 436 ETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDAN 515 (663)
T ss_pred EecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q psy7639 1851 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTES 1930 (2568)
Q Consensus 1851 GiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~ 1930 (2568)
|+|+|++.+..+|++..++|+.. .+||++|++++.++++++..+|+.++++.++||++|+++|.+++.|++....++++
T Consensus 516 Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ 594 (663)
T PTZ00400 516 GIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDA 594 (663)
T ss_pred CCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHH
Confidence 99999999999999999999865 57999999999999999999999999999999999999999999998788899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCC
Q psy7639 1931 EKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 1980 (2568)
Q Consensus 1931 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 1980 (2568)
+++++.+.++++++||..+ +.++|++++++|++.+.++..++|+++.
T Consensus 595 ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~~ 641 (663)
T PTZ00400 595 DKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQGN 641 (663)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999865 6899999999999999999999986543
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-88 Score=910.36 Aligned_cols=580 Identities=45% Similarity=0.746 Sum_probs=532.1
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |..|++.|||+|+|... +|+.|++++..||.+|++++||+||+.++| ++...+
T Consensus 8 DlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~~~~~~ 85 (668)
T PRK13410 8 DLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESK 85 (668)
T ss_pred EeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--hHHhhc
Confidence 5999999999999998776 99999999999999532 699999999999999999999999999876 445678
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
++||.+..... +.+.+.+...++.|+|++|+|++|++|++.|+.++|.++.++||||||||++.||++|++||++|||+
T Consensus 86 ~~~~~v~~~~~-g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 164 (668)
T PRK13410 86 RVPYTIRRNEQ-GNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLE 164 (668)
T ss_pred cCCeEEEECCC-CcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 89999987543 34555565567899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++||+||+|||++|+.+.. .++++||||||||||||||+++.+| .++|+++.|+.++||.+||+.|++|+.++|..
T Consensus 165 v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dvsv~~~~~g-~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~ 241 (668)
T PRK13410 165 VERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLE 241 (668)
T ss_pred eEEEecchHHHHHHhccccC--CCCEEEEEECCCCeEEEEEEEEcCC-eEEEEEeecCCCCChhHHHHHHHHHHHHHHHh
Confidence 99999999999999998653 4678999999999999999999776 89999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCC----cceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+++.++..+++.+.+|+.+||++|+.||....+.+.++++..+ .++...|||++||++|+|+++++..+|+++|++
T Consensus 242 ~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ 321 (668)
T PRK13410 242 KEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKD 321 (668)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888889999999999999999999999999999876543 467889999999999999999999999999999
Q ss_pred cCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccce
Q psy7639 1691 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 1770 (2568)
Q Consensus 1691 a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGi 1770 (2568)
+++.+.+|+.|+||||+||||+|++.|+++|+ ..+...+||++|||+|||++|+++++. .+++++.|++|++||+
T Consensus 322 ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg-~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~p~slgi 396 (668)
T PRK13410 322 AGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP-REPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGL 396 (668)
T ss_pred cCCChhhCcEEEEECCccccHHHHHHHHHHcC-CCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeeccccccc
Confidence 99999999999999999999999999999994 667788999999999999999999874 4689999999999999
Q ss_pred eecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCC
Q psy7639 1771 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDAN 1850 (2568)
Q Consensus 1771 e~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~n 1850 (2568)
++.+|.|.+||||||+||++++.+|++..|||+.+.|.|||||+.++.+|..||+|.|.++||+|+|.++|+|+|+||.|
T Consensus 397 e~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~n 476 (668)
T PRK13410 397 ETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDAN 476 (668)
T ss_pred eecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCC
Q psy7639 1851 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDN----AGNK 1926 (2568)
Q Consensus 1851 GiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~----~~~~ 1926 (2568)
|+|+|++.+..||+++.++|... .+||++|+++|+++++++..+|+.++++.++||++|+|+|+++..|.+ +...
T Consensus 477 GiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~ 555 (668)
T PRK13410 477 GILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPY 555 (668)
T ss_pred cEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999864 679999999999999999999999999999999999999999999964 5677
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccc
Q psy7639 1927 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKM 1975 (2568)
Q Consensus 1927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1975 (2568)
+++++++++...++++++||.++ +.+.++.+.++|.+.+.+++..+
T Consensus 556 ~~~~~~~~~~~~l~~~~~wL~~~---~~~~~~~~~~~~~~~l~~~~~~~ 601 (668)
T PRK13410 556 FAERQRRAVESAMRDVQDSLEQD---DDRELDLAVADLQEALYGLNREV 601 (668)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999754 44566666666666665554444
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-88 Score=911.75 Aligned_cols=590 Identities=45% Similarity=0.743 Sum_probs=546.0
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccch----hhhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCR----EECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~----~~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |..|++.|||+|+|.. .+|+.|++++..||.+|++++|||||+.++|. +...+
T Consensus 45 DlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~--~~~~~ 122 (673)
T PLN03184 45 DLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV--DEESK 122 (673)
T ss_pred EeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchh--hhhhh
Confidence 5999999999999988776 9999999999999953 26999999999999999999999999998764 45678
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
.|||.++... ++.+.+.+...++.|+|++|++++|++|++.|+.++|.++.++||||||||++.||++|++||++|||+
T Consensus 123 ~~~~~v~~~~-~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 201 (673)
T PLN03184 123 QVSYRVVRDE-NGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLE 201 (673)
T ss_pred cCCeEEEecC-CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence 8999998764 334455555556789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++||+||+|||++|+.+.. .++++||||||||||||||+++.++ .++|+++.|+.+|||.+||+.|++|+.++|..
T Consensus 202 v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~DvSi~~~~~~-~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~ 278 (673)
T PLN03184 202 VLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKK 278 (673)
T ss_pred eEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEecCC-EEEEEEecCCCccCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998653 4678999999999999999999776 89999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC----CcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD----GIDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+++.++..+++.+.+|+.+||++|+.||....+.+.++++.. +.++..+|||++|+++|+|+++++..+|+++|++
T Consensus 279 ~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~ 358 (673)
T PLN03184 279 DEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRD 358 (673)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888889999999999999999999999999998876542 2568889999999999999999999999999999
Q ss_pred cCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccce
Q psy7639 1691 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 1770 (2568)
Q Consensus 1691 a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGi 1770 (2568)
+++.+.+|+.|+||||+||||.||++|+++| +..+...+||++|||+|||++|+++++. .+++++.|++|++||+
T Consensus 359 a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~p~slgi 433 (673)
T PLN03184 359 AKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVTPLSLGL 433 (673)
T ss_pred cCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecccccceE
Confidence 9999999999999999999999999999999 4667788999999999999999999874 4678999999999999
Q ss_pred eecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCC
Q psy7639 1771 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDAN 1850 (2568)
Q Consensus 1771 e~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~n 1850 (2568)
++.+|.+.+|||||++||+++++.|++..|+|+.+.|.|||||+.++.+|..||+|.|.++||.|+|.++|+|+|++|.|
T Consensus 434 ~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~ 513 (673)
T PLN03184 434 ETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDAN 513 (673)
T ss_pred EecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q psy7639 1851 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTES 1930 (2568)
Q Consensus 1851 GiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~ 1930 (2568)
|+|+|++.+..||++..++|++ ..+||++|+++|.++++++..+|+.++++.++||++|+++|.+++.|+++...++++
T Consensus 514 GiL~V~a~~~~t~~~~~~~i~~-~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~e 592 (673)
T PLN03184 514 GILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPAD 592 (673)
T ss_pred CeEEEEEEecCCCeEEEEEecc-cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHH
Confidence 9999999999999999999986 467999999999999999999999999999999999999999999998788889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCCCCCCC
Q psy7639 1931 EKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAG 1985 (2568)
Q Consensus 1931 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~ 1985 (2568)
+++++.+.++++++||..+ +.+++++++++|.+.+.++..++|.++|++.++
T Consensus 593 er~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~ 644 (673)
T PLN03184 593 VKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGAG 644 (673)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999865 678999999999999999999998766554443
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-86 Score=896.47 Aligned_cols=583 Identities=51% Similarity=0.799 Sum_probs=543.6
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccch----hhhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCR----EECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~----~~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |..|++.|||+|+|.. .+|+.|+.++..||.+|++++|||||+. ++.++...+
T Consensus 8 DlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~~~~~~ 85 (627)
T PRK00290 8 DLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIK 85 (627)
T ss_pred EeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHHHHHhh
Confidence 5999999999999988877 8999999999999952 2699999999999999999999999998 567788889
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
+|||.++.... ....+.+ .++.|+|++|++++|++|++.|+.++|.++.++||||||||++.||++|++||++|||+
T Consensus 86 ~~p~~~~~~~~-~~~~~~~--~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 162 (627)
T PRK00290 86 LVPYKIVKADN-GDAWVEI--DGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLE 162 (627)
T ss_pred cCCeEEEEcCC-CceEEEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 99999997643 2333444 35789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++|++||+|||++|+.... .++++|||||||||||+|++++.++ .++|+++.|+.++||.+||+.|++|+.++|+.
T Consensus 163 v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dvsv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 163 VLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred eEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEEEEEEEeCC-eEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999998653 4688999999999999999999766 89999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC----CcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD----GIDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+++.++..+++.+.+|+.+||++|+.||....+.+.++.+.. +.++.++|||++|+++|+|+++++..+|+++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888889999999999999999999999999998887653 2578899999999999999999999999999999
Q ss_pred cCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccce
Q psy7639 1691 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 1770 (2568)
Q Consensus 1691 a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGi 1770 (2568)
+++.+.+|+.|+||||+||+|+|++.|+++| +..+..++||++|||+|||++|+++++. .+++++.|++|++||+
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~~~slgi 394 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGI 394 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeeccceEEEE
Confidence 9999999999999999999999999999999 5667889999999999999999999874 4678999999999999
Q ss_pred eecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCC
Q psy7639 1771 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDAN 1850 (2568)
Q Consensus 1771 e~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~n 1850 (2568)
++.+|.|.+|||||+++|+++++.|++..|+|+.+.|.||||++..+.+|..||+|.+.++||.|+|.++|+|+|++|.|
T Consensus 395 ~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~ 474 (627)
T PRK00290 395 ETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDAN 474 (627)
T ss_pred EecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q psy7639 1851 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTES 1930 (2568)
Q Consensus 1851 GiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~ 1930 (2568)
|+|+|++.+..+|+..+++|.++ .+||+++++++.+++.++..+|+..+++.++||++|+++|.+++.|++....++++
T Consensus 475 gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~ 553 (627)
T PRK00290 475 GIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPAD 553 (627)
T ss_pred ceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 99999999999999999999865 57999999999999999999999999999999999999999999998777889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCCC
Q psy7639 1931 EKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 1980 (2568)
Q Consensus 1931 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 1980 (2568)
+++++.+.|+++++||+.+ +.++|++++++|+..+.|+..++|++++
T Consensus 554 e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~ 600 (627)
T PRK00290 554 EKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQAQ 600 (627)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999865 7889999999999999999999987533
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-86 Score=884.86 Aligned_cols=575 Identities=40% Similarity=0.622 Sum_probs=528.8
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|+|.++++.+ |..|+++|||+|+|... +|+.|++++..||.+|++++|||||+.+.|+.. .+
T Consensus 5 DlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~---~~ 81 (599)
T TIGR01991 5 DLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT---FS 81 (599)
T ss_pred EEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh---cc
Confidence 5899999999999998887 89999999999999633 699999999999999999999999999887643 67
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
.+||.++....+ ...+.+. ...|+|+||++++|++||+.|+.++|.++.++||||||||++.||++|++||++|||+
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~--~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 158 (599)
T TIGR01991 82 ILPYRFVDGPGE-MVRLRTV--QGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLN 158 (599)
T ss_pred cCCEEEEEcCCC-ceEEEeC--CCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 889998765432 3333333 3479999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++|++||+|||++|+.+.. .+.++|||||||||||||++++.+| .++|+++.|+.++||.|||+.|++|+.++
T Consensus 159 v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~DvSi~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~l~~~--- 232 (599)
T TIGR01991 159 VLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGGDDFDHALAKWILKQ--- 232 (599)
T ss_pred ceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeEEEEEEEEcCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHh---
Confidence 99999999999999998653 4678999999999999999999776 88999999999999999999999998754
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLD 1694 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~ 1694 (2568)
++.+...++..+.+|+.+||++|+.||....+.+.++. +|.++.++|||++|+++|+|+++++..+|+++|+++++.
T Consensus 233 -~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~ 309 (599)
T TIGR01991 233 -LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLS 309 (599)
T ss_pred -hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45555678999999999999999999999888888864 688899999999999999999999999999999999999
Q ss_pred CccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccceeecC
Q psy7639 1695 KSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774 (2568)
Q Consensus 1695 ~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie~~~ 1774 (2568)
+.+|+.|+||||+||||+|+++|+++|+ ..+..++||++|||.|||++|+.+++.. ..+++++.|++|++||+++.+
T Consensus 310 ~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~~~--~~~~~~l~dv~p~slgi~~~~ 386 (599)
T TIGR01991 310 VEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGAAIQADLLAGNR--IGNDLLLLDVTPLSLGIETMG 386 (599)
T ss_pred hhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHHHHHHhcccc--ccCceEEEEeeeeeeEEEecC
Confidence 9999999999999999999999999995 5566789999999999999999998754 345789999999999999999
Q ss_pred cEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCeeEE
Q psy7639 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILN 1854 (2568)
Q Consensus 1775 g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nGiL~ 1854 (2568)
|.|.+||||||+||+++++.|+|..|+|+.+.|.|||||+.++.+|.+||+|.|.++||.|+|.++|+|+|+||.||+|+
T Consensus 387 g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~ 466 (599)
T TIGR01991 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLT 466 (599)
T ss_pred CEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q psy7639 1855 VTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSR 1934 (2568)
Q Consensus 1855 V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~~~~~ 1934 (2568)
|++.+..||++++++|.++ ..||++|+++|++++++++.+|+..+++.+++|++++++|.++..+.+.+..++++++++
T Consensus 467 V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (599)
T TIGR01991 467 VSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAA 545 (599)
T ss_pred EEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999999999999865 569999999999999999999999999999999999999999999987777899999999
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1935 CREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1935 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+...++++++||..+ +.++++++.++|++.+.++..+.+.
T Consensus 546 ~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 546 IDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999854 6789999999999999998876654
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-86 Score=877.98 Aligned_cols=517 Identities=35% Similarity=0.541 Sum_probs=456.7
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChh----hhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPK----IQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSM 2061 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~----v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~ 2061 (2568)
+.+++|..| |++++|||||++++|.. +....+. .+.. +...+.+...+ +.|+|+||+||
T Consensus 62 ~~~~vG~~A----------ti~~~KrliG~~~~~~~~~~~~~~~~k~----~~~~-~~~~~~~~~~~--~~~speei~a~ 124 (595)
T PRK01433 62 NNFTIGNNK----------GLRSIKRLFGKTLKEILNTPALFSLVKD----YLDV-NSSELKLNFAN--KQLRIPEIAAE 124 (595)
T ss_pred CCEEECchh----------hHHHHHHHhCCCchhhccchhhHhhhhh----eeec-CCCeeEEEECC--EEEcHHHHHHH
Confidence 447899887 89999999999998732 2221111 1111 22334444444 68999999999
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCC
Q psy7639 2062 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 2141 (2568)
Q Consensus 2062 iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGg 2141 (2568)
+|++||+.|+.++|.++.+|||||||||++.||+||++||++|||+|++|||||||||++||+++. .+.++|||||||
T Consensus 125 iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGG 202 (595)
T PRK01433 125 IFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGG 202 (595)
T ss_pred HHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999999998764 457899999999
Q ss_pred eeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeE
Q psy7639 2142 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEAS 2221 (2568)
Q Consensus 2142 gt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~ 2221 (2568)
|||||||+++.+| .|+|++++||.+|||+|||.+|++|++++|. +..+.+++ ..||+||+.||.+..+.
T Consensus 203 GT~DvSi~~~~~~-~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~------~~~~~~~~----~~~ekaK~~LS~~~~~~ 271 (595)
T PRK01433 203 GTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKFD------LPNSIDTL----QLAKKAKETLTYKDSFN 271 (595)
T ss_pred CcEEEEEEEEeCC-eEEEEEEcCCcccChHHHHHHHHHHHHHhcC------CCCCHHHH----HHHHHHHHhcCCCcccc
Confidence 9999999999999 9999999999999999999999999998773 23344443 35999999999987632
Q ss_pred EEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCC
Q psy7639 2222 IEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL 2301 (2568)
Q Consensus 2222 ~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~ 2301 (2568)
+ ..++|||++||++|+|++++++.+++++|++|+ +.+||.|+|||||||||+||++|+++| +.++..
T Consensus 272 ~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~ 338 (595)
T PRK01433 272 N----------DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILS 338 (595)
T ss_pred c----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCcee
Confidence 2 178999999999999999999999999999999 779999999999999999999999999 467788
Q ss_pred CCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEE
Q psy7639 2302 SINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQ 2381 (2568)
Q Consensus 2302 ~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~ 2381 (2568)
++|||||||+|||+||++|++ ...++.+.||+|+||||++.+|.+.++|||||+||+++++.|+|..|+|+.+.|+
T Consensus 339 ~~npdeaVA~GAAi~a~~l~~----~~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~ 414 (595)
T PRK01433 339 DIDPDKAVVWGAALQAENLIA----PHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFH 414 (595)
T ss_pred cCCchHHHHHHHHHHHHHhhC----CccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEE
Confidence 999999999999999999987 2467899999999999999999999999999999999999999999999999999
Q ss_pred EeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHH
Q psy7639 2382 VFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIND 2461 (2568)
Q Consensus 2382 v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~ 2461 (2568)
|||||+..+.+|..||+|.|+|+||+|+|.++|+|+|++|.||+|+|++.++.||++..++|... .+||++|+++|+++
T Consensus 415 v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~ 493 (595)
T PRK01433 415 ILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLEN 493 (595)
T ss_pred EEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999865 56999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCc----cCHHHHHHHHHH-
Q psy7639 2462 AERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL----ADKEEYQDKLQQ- 2536 (2568)
Q Consensus 2462 ~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~----a~~ee~~~k~~~- 2536 (2568)
+++++.+|+.++++.+++|++|++++.+++.+++....+++++|++++..+++.++||+.++. ...+++++.++.
T Consensus 494 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 573 (595)
T PRK01433 494 AYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKS 573 (595)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998766789999999999999999999986421 112345555555
Q ss_pred HHHHHHHHHHHHhc
Q psy7639 2537 LQKSCMPLMSKMHG 2550 (2568)
Q Consensus 2537 L~~~~~pi~~r~~e 2550 (2568)
|+..|+|++.++++
T Consensus 574 ~~~~~~~~~~k~~~ 587 (595)
T PRK01433 574 MDTKLNIIINDLLK 587 (595)
T ss_pred HHHHhhHHHHHHhc
Confidence 66666667777765
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-87 Score=829.07 Aligned_cols=554 Identities=37% Similarity=0.574 Sum_probs=509.1
Q ss_pred CCCCCCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEE-ecCCCceEEEEEcCceeeeChhhhH
Q psy7639 1981 GASAGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV-NDCSKPKIQVEFKGERKTFAPEEIS 2059 (2568)
Q Consensus 1981 ~~~~~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~peei~ 2059 (2568)
..++...|++|.+|+.+..+|++||+.++|||+||.|+||.+|.+.+++||.++ ..||.+++.+.|.|+.+.|+|++|.
T Consensus 39 vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~ 118 (727)
T KOG0103|consen 39 VSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVL 118 (727)
T ss_pred eeeccccceeeeccccceeecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHH
Confidence 345567899999999999999999999999999999999999999999999998 5799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcC-----CcceE
Q psy7639 2060 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK-----GERNV 2134 (2568)
Q Consensus 2060 a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~-----~~~~v 2134 (2568)
||+|.+||.+|++.+..+|.+|||+||+||++.||+++.+||++|||+++|||||.||+||+||+.+++. ++++|
T Consensus 119 Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v 198 (727)
T KOG0103|consen 119 AMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNV 198 (727)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998654 46889
Q ss_pred EEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhcc
Q psy7639 2135 LIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTL 2214 (2568)
Q Consensus 2135 lv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~L 2214 (2568)
+++|+|+++++||++.|..| .+.|++|.+|.+|||+|||..|++||+++|+.+|++|++.|+||..||+.+||+.|++|
T Consensus 199 ~fvD~GHS~~q~si~aF~kG-~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~l 277 (727)
T KOG0103|consen 199 VFVDIGHSSYQVSIAAFTKG-KLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVL 277 (727)
T ss_pred EEEecccccceeeeeeeccC-cceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhc
Q psy7639 2215 SSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 2294 (2568)
Q Consensus 2215 S~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f 2294 (2568)
|+++.++++|+|++++.|.+..|+|++||+||.++++|+..|+.++|++++++.+||+.|.+|||+||||.|+++|.++|
T Consensus 278 SAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F 357 (727)
T KOG0103|consen 278 SANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF 357 (727)
T ss_pred hcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEE-----ecCCeeeEeeecCCCCCccceeeEE
Q psy7639 2295 CGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE-----TAGGVMTKLIERNTRIPCKQTQTFT 2369 (2568)
Q Consensus 2295 ~~~~~~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~-----~~~~~~~~li~r~~~iP~~~~~~f~ 2369 (2568)
|+++++++|.|||||+|||+|+|+||+ .|+++++-+.|+.||++.+. .+++....+||+|.++|..+..+|.
T Consensus 358 -gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~ 434 (727)
T KOG0103|consen 358 -GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFN 434 (727)
T ss_pred -CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEE
Confidence 899999999999999999999999998 89999999999999999765 2235667899999999999999998
Q ss_pred eccCCCCcEEEEEeec-CcccccCCCceeEEEecCCCCCCCC-CcceEEEEEeCCCeeEEEEeee------c--------
Q psy7639 2370 TYADNQPAVTIQVFEG-ERAMTKDNNLLGTFDLTGIPPAPRG-VPKIDVTFDLDANGILNVTAKD------T-------- 2433 (2568)
Q Consensus 2370 t~~d~q~~~~i~v~~g-e~~~~~~n~~lg~~~l~~i~~~~~g-~~~i~v~f~id~~Gil~v~a~~------~-------- 2433 (2568)
... .+.+.++.. ...++.....|++|.++++.+...| ..+++|.+++|.+||+.|+..- .
T Consensus 435 Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~ 510 (727)
T KOG0103|consen 435 RKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPM 510 (727)
T ss_pred ecC----ceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchhccccchh
Confidence 654 466666544 4666756679999999999999885 4579999999999999998630 0
Q ss_pred c--------------CCC----cceeEEecC-CCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy7639 2434 S--------------SGK----SQNITIKND-KGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 2494 (2568)
Q Consensus 2434 ~--------------t~~----~~~i~i~~~-~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~ 2494 (2568)
. .+| ...+.+... .++|+..+++..++++.+|..+|+...++.+++|+||+|||+||++|.
T Consensus 511 e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~ 590 (727)
T KOG0103|consen 511 EYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLS 590 (727)
T ss_pred hhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh
Confidence 0 011 011222222 357999999999999999999999999999999999999999999998
Q ss_pred hcc-CCCCHHHHHHHHHHHHHHHHHhhc-CCccCHHHHHHHHHHHHHHHH
Q psy7639 2495 NAG-NKLTESEKSRCREECDATLKWLDN-NTLADKEEYQDKLQQLQKSCM 2542 (2568)
Q Consensus 2495 ~~~-~~l~~~ek~~i~~~l~e~~~WL~~-~~~a~~ee~~~k~~~L~~~~~ 2542 (2568)
+.+ +++++++++++...|+++++|||+ |++.++..|..|+.+|+++..
T Consensus 591 ~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~ 640 (727)
T KOG0103|consen 591 DKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD 640 (727)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh
Confidence 766 779999999999999999999986 678899999999999999985
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-85 Score=879.40 Aligned_cols=582 Identities=49% Similarity=0.777 Sum_probs=539.7
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccch----hhhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCR----EECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~----~~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |..|.+.|||+|+|.. .+|+.|++++..||.+|++++||+||+.+++ +....+
T Consensus 8 DlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~~~~~~ 85 (621)
T CHL00094 8 DLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAK 85 (621)
T ss_pred EeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--HHhhhh
Confidence 5899999999999998877 8999999999999943 2699999999999999999999999999876 445678
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
+|||.++... +..+.+.+...+..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++|||+
T Consensus 86 ~~~~~v~~~~-~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 164 (621)
T CHL00094 86 QVSYKVKTDS-NGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLE 164 (621)
T ss_pred cCCeEEEECC-CCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8999998754 234444555556789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++||+||+|||++|+.+.. .+.++|||||||||||+||+++.++ +++|+++.|+.++||.+||+.|++|+.++|++
T Consensus 165 v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~DvSv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (621)
T CHL00094 165 VLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKK 241 (621)
T ss_pred eEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeEEEEEEEEcCC-EEEEEEEecCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999997653 4578999999999999999999766 89999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC----CcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD----GIDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++...|||++||++|+|+++++..+|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (621)
T CHL00094 242 KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321 (621)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888889999999999999999999998889998886542 2468889999999999999999999999999999
Q ss_pred cCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccce
Q psy7639 1691 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 1770 (2568)
Q Consensus 1691 a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGi 1770 (2568)
+++.+.+|+.|+||||+||+|.|++.|+++|+ ..+...+||++|||+|||++|+++++. .+++++.|++|++||+
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~~~~lgi 396 (621)
T CHL00094 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGV 396 (621)
T ss_pred cCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeeeceeeee
Confidence 99999999999999999999999999999995 567788999999999999999999873 4678999999999999
Q ss_pred eecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCC
Q psy7639 1771 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDAN 1850 (2568)
Q Consensus 1771 e~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~n 1850 (2568)
++.+|.|.+||||||+||+++++.|++..|+|+.+.|.||||++.++.+|..||+|.+.++||.|+|.++|+|+|++|.|
T Consensus 397 ~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~ 476 (621)
T CHL00094 397 ETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDAN 476 (621)
T ss_pred eccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q psy7639 1851 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTES 1930 (2568)
Q Consensus 1851 GiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~ 1930 (2568)
|+|+|++.+..||++..++|.+ ..+||++|++++++++.++..+|+..+++.++||.+|+++|.+++.|+++...++++
T Consensus 477 Gil~v~~~~~~t~~~~~~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~ 555 (621)
T CHL00094 477 GILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEE 555 (621)
T ss_pred CeEEEEEeeccCCceeeeeecc-chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHH
Confidence 9999999999999999999985 457999999999999999999999999999999999999999999998777788999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1931 EKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1931 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+++++.+.++++++||..+ +.++|++++++|+..+.|+..++|.
T Consensus 556 ~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 556 KKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999754 5689999999999999999998887
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-85 Score=874.81 Aligned_cols=574 Identities=38% Similarity=0.596 Sum_probs=523.7
Q ss_pred HHHhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcc
Q psy7639 1379 KERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDM 1453 (2568)
Q Consensus 1379 ~~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~ 1453 (2568)
...||||||++|++.++++.+ |..|++.|||+|+|... +|+.|+.++..+|.+|++++|||||+.++|. +...
T Consensus 23 GIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~--~~~~ 100 (616)
T PRK05183 23 GIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI--QQRY 100 (616)
T ss_pred EEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--hhhh
Confidence 346999999999999998887 89999999999999644 6999999999999999999999999998774 3446
Q ss_pred cccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy7639 1454 KHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGL 1533 (2568)
Q Consensus 1454 k~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL 1533 (2568)
+.+||.+..... ....+... ...++|+||++++|++|++.|+.++|.++.++||||||||++.||+++++||++|||
T Consensus 101 ~~~~~~~~~~~~-g~~~~~~~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl 177 (616)
T PRK05183 101 PHLPYQFVASEN-GMPLIRTA--QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGL 177 (616)
T ss_pred hcCCeEEEecCC-CceEEEec--CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 788998876532 22333332 347999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHH
Q psy7639 1534 NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 1613 (2568)
Q Consensus 1534 ~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~ 1613 (2568)
++++||+||+|||++|+.+.. .++++||||+||||||||++++.+| .++|+++.|+.++||.|||+.|++|+.++|.
T Consensus 178 ~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSv~~~~~~-~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 178 NVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred CeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEeeCC-EEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 999999999999999998653 4678999999999999999999766 8899999999999999999999999887654
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Q psy7639 1614 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKL 1693 (2568)
Q Consensus 1614 ~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~ 1693 (2568)
.+...++..+.+|+.+||++|+.||....+.+.++.+ ...|||++|+++|+|+++++..+++++|+++++
T Consensus 255 ----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~ 324 (616)
T PRK05183 255 ----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALRDAGV 324 (616)
T ss_pred ----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444678999999999999999999998888888532 224999999999999999999999999999999
Q ss_pred CCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccceeec
Q psy7639 1694 DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 1773 (2568)
Q Consensus 1694 ~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie~~ 1773 (2568)
.+.+|+.|+||||+||||+|++.|+++|+ ..+..++||++|||+|||+||+++++.. ..+++++.|++|++||+++.
T Consensus 325 ~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~~~l~dv~p~slgi~~~ 401 (616)
T PRK05183 325 EADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAGNK--PDSDMLLLDVIPLSLGLETM 401 (616)
T ss_pred CcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhcccc--ccCceEEEeeccccccceec
Confidence 99999999999999999999999999995 4556789999999999999999998864 24578999999999999999
Q ss_pred CcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCeeE
Q psy7639 1774 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGIL 1853 (2568)
Q Consensus 1774 ~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nGiL 1853 (2568)
+|.|.+||||||+||+++++.|++..|+|+.+.|.|||||+.++.+|.+||+|.|.++||.|+|.++|+|+|++|.||+|
T Consensus 402 ~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil 481 (616)
T PRK05183 402 GGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLL 481 (616)
T ss_pred CCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q psy7639 1854 NVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKS 1933 (2568)
Q Consensus 1854 ~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~~~~ 1933 (2568)
+|+|++..||++.+++|+++ ..||++||++|++++++++.+|+..+++.++||+++.++|.++..+++.+..+++++++
T Consensus 482 ~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 560 (616)
T PRK05183 482 SVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERA 560 (616)
T ss_pred EEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999865 45999999999999999999999999999999999999999999997777888999999
Q ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1934 RCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1934 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
++...++++++||+.+ +.+.|++++++|++.+.++..+.|+
T Consensus 561 ~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 561 AIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999865 7899999999999999999876664
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-85 Score=883.35 Aligned_cols=580 Identities=52% Similarity=0.815 Sum_probs=537.7
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |..|++.|||+|+|..+ +|+.|+.++..||.+|++++|||||+.+++ ++...+
T Consensus 6 DlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~--~~~~~~ 83 (595)
T TIGR02350 6 DLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDE--VTEEAK 83 (595)
T ss_pred EeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchH--HHHHhh
Confidence 5899999999999998887 99999999999999633 599999999999999999999999998844 566678
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
+|||.+....+ ...+.+ .++.|+|+++++++|++|++.|+.++|.++.++||||||+|++.||++|++||++|||+
T Consensus 84 ~~~~~v~~~~~--~~~~~v--~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 159 (595)
T TIGR02350 84 RVPYKVVGDGG--DVRVKV--DGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLE 159 (595)
T ss_pred cCCeeEEcCCC--ceEEEE--CCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 99999443332 333344 36789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++|++||+|||++|+.... ..++++|||||||||||+|++++.++ .++|+++.|+.++||.+||+.|++|+.++|.+
T Consensus 160 v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv~~~~~~-~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 160 VLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred eEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEEEEecCC-eEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 99999999999999987653 34688999999999999999999766 89999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC----CcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD----GIDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+++.++..++..+.+|+.+||++|+.||....+.+.++.+.. +.++.++|||++|+++|+|+++++..+|+++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888889999999999999999999999999998886543 3568889999999999999999999999999999
Q ss_pred cCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccce
Q psy7639 1691 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 1770 (2568)
Q Consensus 1691 a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGi 1770 (2568)
+++.+.+|+.|+||||+||+|+|++.|+++|+ ..+..++||++|||+|||++|+.+++. ++++.+.|++|++||+
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi 392 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGI 392 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEE
Confidence 99999999999999999999999999999996 667889999999999999999999875 4678999999999999
Q ss_pred eecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCC
Q psy7639 1771 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDAN 1850 (2568)
Q Consensus 1771 e~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~n 1850 (2568)
++.+|.+.+|||||+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.+.++||.|+|.++|+|+|++|.|
T Consensus 393 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~ 472 (595)
T TIGR02350 393 ETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDAN 472 (595)
T ss_pred EecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q psy7639 1851 GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTES 1930 (2568)
Q Consensus 1851 GiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~ 1930 (2568)
|+|+|++.+..+|++.+++|+.+ .+||++|++++.+++.++..+|+..+++.++||++|+++|.+++.|++....++++
T Consensus 473 G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~ 551 (595)
T TIGR02350 473 GILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAE 551 (595)
T ss_pred CeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 99999999999999999999875 57999999999999999999999999999999999999999999997777789999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1931 EKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1931 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+++++.+.++++++||+.+ +.++|++++++|++.+.+++.++|+
T Consensus 552 e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~~ 595 (595)
T TIGR02350 552 EKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMYQ 595 (595)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999865 6789999999999999999888764
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-85 Score=860.42 Aligned_cols=562 Identities=55% Similarity=0.804 Sum_probs=532.1
Q ss_pred HHhcccccEEEEEEcc-cccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhc
Q psy7639 1380 ERISARNNLEAYVFNV-KQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQD 1452 (2568)
Q Consensus 1380 ~~lGttns~~a~~~~~-~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~ 1452 (2568)
..||||||++|++..+ .+.+ |.+|+++|||+|+|..+ +|..|++++..||.+|++.+||+||+...
T Consensus 10 IDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~------- 82 (579)
T COG0443 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN------- 82 (579)
T ss_pred EEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-------
Confidence 3599999999999987 5555 99999999999999633 59999999999999999999999998621
Q ss_pred ccccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcC
Q psy7639 1453 MKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 1532 (2568)
Q Consensus 1453 ~k~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AG 1532 (2568)
...+.+.+. ++.|+|+||++++|++||+.||.++|..+.++||||||||++.||+++++||++||
T Consensus 83 -------------~~~~~~~~~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaG 147 (579)
T COG0443 83 -------------GLKISVEVD--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAG 147 (579)
T ss_pred -------------CCcceeeeC--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 111334443 48899999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHH
Q psy7639 1533 LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612 (2568)
Q Consensus 1533 L~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~ 1612 (2568)
|++++|+|||||||++|+.+.. .+.+|||||+||||||+||+++.+| +++|+++.||++|||+|||.+|+.|+.++|
T Consensus 148 l~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~~~g-~~ev~at~gd~~LGGddfD~~l~~~~~~~f 224 (579)
T COG0443 148 LNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEF 224 (579)
T ss_pred CCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEEcCC-EEEEeecCCCcccCchhHHHHHHHHHHHHh
Confidence 9999999999999999999875 6789999999999999999999877 999999999999999999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q psy7639 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAK 1692 (2568)
Q Consensus 1613 ~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~ 1692 (2568)
+.+++.++..++..+++|+.+||++|+.||...++.+++++...++++..+|||++||+++.+++++++.++.++|++++
T Consensus 225 ~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~ 304 (579)
T COG0443 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAG 304 (579)
T ss_pred hccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccceee
Q psy7639 1693 LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 1772 (2568)
Q Consensus 1693 ~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie~ 1772 (2568)
+.+.+|+.|+||||+||||.|++.++++|+ +.+...+||+++||+|||+||+.+++..+ +++++|++|+|+|+++
T Consensus 305 l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~~----d~ll~Dv~plslgie~ 379 (579)
T COG0443 305 LEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIET 379 (579)
T ss_pred CChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCccc----CceEEeeeeecccccc
Confidence 999999999999999999999999999996 88889999999999999999999998653 8999999999999999
Q ss_pred cCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCee
Q psy7639 1773 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 1852 (2568)
Q Consensus 1773 ~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nGi 1852 (2568)
.++.+.++|+||+++|++++..|+|..|+|+.+.+.+++||+.+..+|..+|.|.+.++||.|+|.++|+|+|++|.||+
T Consensus 380 ~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi 459 (579)
T COG0443 380 LGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGI 459 (579)
T ss_pred CcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q psy7639 1853 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1932 (2568)
Q Consensus 1853 L~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~~~ 1932 (2568)
++|+++++.+|++.+++|..+.+ ||+++|++|+++++.++++|++.++.++.||+++.+++.++..|.+.. +.+..++
T Consensus 460 ~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 537 (579)
T COG0443 460 LNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEK 537 (579)
T ss_pred eEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHH
Confidence 99999999999999999999988 999999999999999999999899999999999999999999998888 9999999
Q ss_pred HHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1933 SRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1933 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+++...+++++.||.. + .++++.+.++|+....++.+.+|+
T Consensus 538 ~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 538 EKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999986 2 899999999999999999888875
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-83 Score=847.71 Aligned_cols=552 Identities=34% Similarity=0.504 Sum_probs=485.9
Q ss_pred HHHhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCCh----hh
Q psy7639 1379 KERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDP----KI 1449 (2568)
Q Consensus 1379 ~~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~----~~ 1449 (2568)
...||||||++|++.++++.+ |..|+++|||+|+|.+. +|+.| |++++||+||+.++|. ..
T Consensus 23 GIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~~~~ 92 (595)
T PRK01433 23 GIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNTPAL 92 (595)
T ss_pred EEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccchhh
Confidence 346999999999999888877 89999999999999643 58877 8999999999998763 22
Q ss_pred hhcccccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHH
Q psy7639 1450 QQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 1529 (2568)
Q Consensus 1450 ~~~~k~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~ 1529 (2568)
+..++++ +. ..+..+. +...++.|+|+||++++|++||+.|+.++|.++.++||||||||++.||++|++||+
T Consensus 93 ~~~~k~~----~~-~~~~~~~--~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~ 165 (595)
T PRK01433 93 FSLVKDY----LD-VNSSELK--LNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAK 165 (595)
T ss_pred Hhhhhhe----ee-cCCCeeE--EEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2222221 11 1122233 333568899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHH
Q psy7639 1530 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 1609 (2568)
Q Consensus 1530 ~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~ 1609 (2568)
+|||+++++++||+|||++|+.+.. ...++|||||||||||||++++.+| .++|+++.|+.++||+|||.+|++|+.
T Consensus 166 ~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSi~~~~~~-~~~V~at~gd~~lGG~d~D~~l~~~~~ 242 (595)
T PRK01433 166 IAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLC 242 (595)
T ss_pred HcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCCCcEEEEEEEEeCC-eEEEEEEcCCcccChHHHHHHHHHHHH
Confidence 9999999999999999999998653 3568999999999999999999777 889999999999999999999999998
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHH
Q psy7639 1610 EEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQ 1689 (2568)
Q Consensus 1610 ~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~ 1689 (2568)
.+|... .+.. .++.||++|+.||......+ ..++|||++|+++|+|+++++..+++++|+
T Consensus 243 ~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~ 302 (595)
T PRK01433 243 NKFDLP------NSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLE 302 (595)
T ss_pred HhcCCC------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766321 1222 33469999999997654321 156899999999999999999999999999
Q ss_pred HcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccc
Q psy7639 1690 DAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG 1769 (2568)
Q Consensus 1690 ~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slG 1769 (2568)
+++ +.+|+.|+||||+||+|+||++|+++|+ ..+..++||++|||+|||++|+.+++.. .+++++|++|+|||
T Consensus 303 ~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~a~~l~~~~----~~~~l~Dv~p~slg 375 (595)
T PRK01433 303 QAG--NPNIDGVILVGGATRIPLIKDELYKAFK-VDILSDIDPDKAVVWGAALQAENLIAPH----TNSLLIDVVPLSLG 375 (595)
T ss_pred hcC--cccCcEEEEECCcccChhHHHHHHHHhC-CCceecCCchHHHHHHHHHHHHHhhCCc----cceEEEEecccceE
Confidence 998 6789999999999999999999999995 5677789999999999999999998743 47889999999999
Q ss_pred eeecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcC
Q psy7639 1770 IETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 1849 (2568)
Q Consensus 1770 ie~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~ 1849 (2568)
+++.+|.|.+||||||+||+++++.|+|..|+|+.+.|.|||||+.++.+|..||+|.|.++||.|+|.++|+|+|++|.
T Consensus 376 i~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~ 455 (595)
T PRK01433 376 MELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDA 455 (595)
T ss_pred EEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q psy7639 1850 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTE 1929 (2568)
Q Consensus 1850 nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~ 1929 (2568)
||+|+|+|.+..||++++++|.++ ..||++|+++|+++++++..+|...+++++++|+++++++..++.+++...+++.
T Consensus 456 ~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 534 (595)
T PRK01433 456 DGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSE 534 (595)
T ss_pred CCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 999999999999999999999865 4599999999999999999999999999999999999999999999887788999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcc----CHHHHHHHHHH-HHHhhhcccccccCC
Q psy7639 1930 SEKSRCREECDATLKWLDNNTLA----DKEEYQDKLQQ-LQKSCMPLMSKMHGG 1978 (2568)
Q Consensus 1930 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~-l~~~~~~~~~~~y~~ 1978 (2568)
++++.+...++++++||+.+... ..+++++.+++ |+..|+|++.+||++
T Consensus 535 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 588 (595)
T PRK01433 535 SEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLLKG 588 (595)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Confidence 99999999999999999755221 23455566666 777899999999974
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-82 Score=867.06 Aligned_cols=557 Identities=50% Similarity=0.842 Sum_probs=520.8
Q ss_pred CCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHH
Q psy7639 1985 GDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVL 2063 (2568)
Q Consensus 1985 ~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL 2063 (2568)
++++++|..|+.++.++|+++++++|||||++|+++.++.+.+.+||.++. ++|.+.+.+.+.++...|+|++|++|+|
T Consensus 41 ~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (602)
T PF00012_consen 41 DNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMIL 120 (602)
T ss_dssp SSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred eecccCCcchhhhcccccccccccccccccccccccccchhhhcccccccccccccccccccccccceeeeeecccccch
Confidence 357899999999999999999999999999999999999999999999985 4888999999888778999999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCee
Q psy7639 2064 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGT 2143 (2568)
Q Consensus 2064 ~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt 2143 (2568)
++|++.|+.++|.++.++||||||||++.||+++++||++|||++++||+||||||++|++.+.. .++++||||+||||
T Consensus 121 ~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt 199 (602)
T PF00012_consen 121 KYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGT 199 (602)
T ss_dssp HHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSE
T ss_pred hhhcccchhhcccccccceeeechhhhhhhhhcccccccccccccceeecccccccccccccccc-cccceeccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999998764 57899999999999
Q ss_pred eEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCC--cceeE
Q psy7639 2144 FDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS--STEAS 2221 (2568)
Q Consensus 2144 ~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~--~~~~~ 2221 (2568)
||||++++.+| .++|+++.||.+|||++||.+|++|+.++|+++++.|+..+++++.+|+.+||++|+.||. +.++.
T Consensus 200 ~dvs~~~~~~~-~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~ 278 (602)
T PF00012_consen 200 FDVSVVEFSNG-QFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEIT 278 (602)
T ss_dssp EEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEE
T ss_pred Eeeeehhcccc-cccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999999999 78888
Q ss_pred EEEecccC-CcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCC
Q psy7639 2222 IEIDALYD-GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 2300 (2568)
Q Consensus 2222 ~~i~~~~~-~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~ 2300 (2568)
+.++++++ |.|+.+.|||++||++++++++++.++++++|+++++++.+|+.|+||||+||||+||+.|++.|+ +.+.
T Consensus 279 ~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~ 357 (602)
T PF00012_consen 279 ISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKIS 357 (602)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB
T ss_pred cccccccccccccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccc
Confidence 99999998 899999999999999999999999999999999999999999999999999999999999999996 7888
Q ss_pred CCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEE
Q psy7639 2301 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTI 2380 (2568)
Q Consensus 2301 ~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i 2380 (2568)
.++|||||||+|||++|+.+++ .++++++.+.|++|+++||+..+|.+.++||+|+++|+..+..|+|..++|+.+.|
T Consensus 358 ~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i 435 (602)
T PF00012_consen 358 KSVNPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISI 435 (602)
T ss_dssp -SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEE
T ss_pred cccccccccccccccchhhhcc--ccccccccccccccccccccccccccccccccccccccccccccchhccccccccc
Confidence 9999999999999999999998 57788999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHH
Q psy7639 2381 QVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIN 2460 (2568)
Q Consensus 2381 ~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~ 2460 (2568)
.+|||++....+|..||+|.|+++++.+.|.++|+|+|++|.||+|+|++.+..++....+++..... +++++++++.+
T Consensus 436 ~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~ 514 (602)
T PF00012_consen 436 DIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKK 514 (602)
T ss_dssp EEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHH
T ss_pred eeeeccccccccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccccccc-ccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999888888888644 99999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcC-CccCHHHHHHHHHHHHH
Q psy7639 2461 DAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNN-TLADKEEYQDKLQQLQK 2539 (2568)
Q Consensus 2461 ~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~-~~a~~ee~~~k~~~L~~ 2539 (2568)
+++++..+|+.++++.+++|++|+++|++|+.+++..+.++++++ .+.+++..+||++. ..++.++|++|+++|++
T Consensus 515 ~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~ 591 (602)
T PF00012_consen 515 KLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKK 591 (602)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877677888777 78889999999874 45679999999999999
Q ss_pred HHHHHHHHHhc
Q psy7639 2540 SCMPLMSKMHG 2550 (2568)
Q Consensus 2540 ~~~pi~~r~~e 2550 (2568)
...||..|+++
T Consensus 592 ~~~~i~~r~~~ 602 (602)
T PF00012_consen 592 VIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999999874
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-78 Score=745.36 Aligned_cols=564 Identities=32% Similarity=0.513 Sum_probs=492.8
Q ss_pred CCCCCCCCCCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEE-ecCCCceEEEEEcCceeeeCh
Q psy7639 1977 GGAGGASAGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV-NDCSKPKIQVEFKGERKTFAP 2055 (2568)
Q Consensus 1977 ~~~~~~~~~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~p 2055 (2568)
.++.-++.+++|++|++|.....|+|++++.++|.|+|++++||.++.+.+++||.-+ .++.+..|.+.+.+ ...|++
T Consensus 57 tp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysv 135 (902)
T KOG0104|consen 57 TPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSV 135 (902)
T ss_pred CcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCC-ccccCH
Confidence 3455677889999999999999999999999999999999999999999999988765 33345555555544 578999
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcC---Ccc
Q psy7639 2056 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK---GER 2132 (2568)
Q Consensus 2056 eei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~---~~~ 2132 (2568)
|||.||+|.+.+..||.++..+|+++|||||.|||++||+|+.+||+|||++||+||||.+||||.||+.+... .++
T Consensus 136 EellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q 215 (902)
T KOG0104|consen 136 EELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQ 215 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997422 679
Q ss_pred eEEEEeeCCeeeEEEEEEEc------CC---cEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHH
Q psy7639 2133 NVLIFDLGGGTFDVSILSID------EG---ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK--KDMSVNPRALR 2201 (2568)
Q Consensus 2133 ~vlv~DlGggt~dvsil~~~------~g---~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~--~d~~~~~~~~~ 2201 (2568)
+++|||||+|++.++|+.|. .| ..++|+++++|.+|||..|.++|.+||++.|.++++ .|++.|||||+
T Consensus 216 ~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAma 295 (902)
T KOG0104|consen 216 HYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMA 295 (902)
T ss_pred EEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHH
Confidence 99999999999999999983 22 478999999999999999999999999999999887 47899999999
Q ss_pred HHHHHHHHHhhccCCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCcc
Q psy7639 2202 RLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 2281 (2568)
Q Consensus 2202 ~L~~~~e~~K~~LS~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGst 2281 (2568)
||.++|+|+|.+||+|.++.++|++|++|+||+.+|||++||+||+|++.|+..||++||+.|+++.++|+.|||+||+|
T Consensus 296 Kl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~T 375 (902)
T KOG0104|consen 296 KLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGAT 375 (902)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEE--ecCC------eeeEe
Q psy7639 2282 RIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE--TAGG------VMTKL 2353 (2568)
Q Consensus 2282 riP~v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~--~~~~------~~~~l 2353 (2568)
|||+||+.|.++.+.+++.+++|.|||+|+||+||||.||. +|+++.+.+.|..+|++-++ +..| ....+
T Consensus 376 RVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~l 453 (902)
T KOG0104|consen 376 RVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDL 453 (902)
T ss_pred cCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--cccccceeeeecccccEEEEeccCCcccccchhHHHH
Confidence 99999999999999899999999999999999999999997 89999999999887776654 3323 22348
Q ss_pred eecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCC-------CcceEEEEEeCCCeeE
Q psy7639 2354 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG-------VPKIDVTFDLDANGIL 2426 (2568)
Q Consensus 2354 i~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g-------~~~i~v~f~id~~Gil 2426 (2568)
|+||.++|.++..+|+.+.|+. .+.+-.|.- ...+-.|+|+|+..+... ...|+++|.+|.+|++
T Consensus 454 f~~~~~yPnk~vi~~~~ysddf---~~~~n~~~~-----~~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~ 525 (902)
T KOG0104|consen 454 FARMSPYPNKKVITFTSYSDDF---PFNINYGDL-----GQNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIV 525 (902)
T ss_pred HhcCCcCCCcceeeccccCCcc---ccccchhhh-----ccCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCce
Confidence 9999999999999999887743 333322211 034568999988776432 2459999999999999
Q ss_pred EEEeeec---------------------cC------C----------------Cc--c----------------------
Q psy7639 2427 NVTAKDT---------------------SS------G----------------KS--Q---------------------- 2439 (2568)
Q Consensus 2427 ~v~a~~~---------------------~t------~----------------~~--~---------------------- 2439 (2568)
.|+..+. +| + .+ .
T Consensus 526 ~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~ 605 (902)
T KOG0104|consen 526 LVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEA 605 (902)
T ss_pred EEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccccccccchhc
Confidence 9987520 00 0 00 0
Q ss_pred ---------------eeEEecC---CCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhcc--CC
Q psy7639 2440 ---------------NITIKND---KGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAG--NK 2499 (2568)
Q Consensus 2440 ---------------~i~i~~~---~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~--~~ 2499 (2568)
.+.|+.. .+.|+...++....+++.+...|+.+.++++|-|.||.|+|.+.++|++.. .+
T Consensus 606 ~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~ 685 (902)
T KOG0104|consen 606 QKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEV 685 (902)
T ss_pred cCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhh
Confidence 0223222 246999999999999999999999999999999999999999999998743 78
Q ss_pred CCHHHHHHHHHHHHHHHHHhhc-CCccCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7639 2500 LTESEKSRCREECDATLKWLDN-NTLADKEEYQDKLQQLQKSCMPLMSKMHGG 2551 (2568)
Q Consensus 2500 l~~~ek~~i~~~l~e~~~WL~~-~~~a~~ee~~~k~~~L~~~~~pi~~r~~e~ 2551 (2568)
.++++++.|++.+....+||++ .....+++|++++.+|++++..+..|.+++
T Consensus 686 at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 686 ATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEER 738 (902)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8999999999999999999986 445788999999999999999999998764
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-78 Score=745.16 Aligned_cols=591 Identities=36% Similarity=0.571 Sum_probs=528.0
Q ss_pred CcccccccCc--ccccchhhhccCCCCceeeeccccccccccc-----CCCceeecHHHHHhHhhCCCchHHhhhhhcCC
Q psy7639 1 MKESYIAEGP--CAISPAQRRVMRDPGRVVERAALELRVKSLT-----NPLSYFTGDAAKNQVAMNPKNTVFDAKRLIGR 73 (2568)
Q Consensus 1 ~~~~~~~~g~--~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~-----~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~ 73 (2568)
|+.+|||||- ||+++|.. +-+|.++|+.+-+..+ +...|++|.+|+++..+|+.||+.++|||+||
T Consensus 1 msvvG~D~Gn~nc~iavAr~-------~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr 73 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQ-------GGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGR 73 (727)
T ss_pred CCceeeeccccceeeeeecc-------CCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhcc
Confidence 8999999996 56665542 3356666655444432 24689999999999999999999999999999
Q ss_pred CCCChhHHhhcccCCeEEEe-cCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHH
Q psy7639 74 KFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQR 152 (2568)
Q Consensus 74 ~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr 152 (2568)
+|+||.+|.+.+.+||.++. .++..++.++|.|+.+.|+|+||+||+|.+|++.|++.+..++.+|||+||+||++.||
T Consensus 74 ~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qR 153 (727)
T KOG0103|consen 74 KFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQR 153 (727)
T ss_pred ccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHH
Confidence 99999999999999999998 57889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEecchhHHHHhhccccc-c----CCCceEEEEEeCCcceEEEEeeecCCcEEEEEeeccccccc
Q psy7639 153 QATKDAGAIAGLNVMRIVNEPTAAALAYGLDKN-L----KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227 (2568)
Q Consensus 153 ~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~-~----~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lG 227 (2568)
+++.+||++|||++++|++|.+|+|++||+.++ + .++.+|+++|+|++++.+|++.|..| .+.++++.+|.++|
T Consensus 154 ravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG-~lkvl~ta~D~~lG 232 (727)
T KOG0103|consen 154 RAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKG-KLKVLATAFDRKLG 232 (727)
T ss_pred HHHHhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccC-cceeeeeecccccc
Confidence 999999999999999999999999999999876 2 23678999999999999999999999 57999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCcceEEeecHHHHHHHHhhh
Q psy7639 228 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDL 307 (2568)
Q Consensus 228 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~l~~~~d~~~~itR~efe~l~~~l 307 (2568)
|++||+.|.+|+.++|+.+|++++..++++..||+.+||+.|+.||+++..+.+|+|++++.|.+..|+|+|||++|.|+
T Consensus 233 gr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~pl 312 (727)
T KOG0103|consen 233 GRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPL 312 (727)
T ss_pred cchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCCCcccc
Q psy7639 308 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQ 387 (2568)
Q Consensus 308 ~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~~~~~~ 387 (2568)
++|+..++.++|++++++.+||+.|++|||+||+|.|.+.|.++| ++++.+++|.|+|||+|||+++|++|+.+ +++
T Consensus 313 L~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~f--rVR 389 (727)
T KOG0103|consen 313 LERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPTF--RVR 389 (727)
T ss_pred HHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCccc--cce
Confidence 999999999999999999999999999999999999999999999 89999999999999999999999999885 789
Q ss_pred cEEEEeeecccceeEee----C-CceeEEEEcCCccCccceEEEEeeecCCccEEEEEEecC-cccccCCcceeEEEecC
Q psy7639 388 DVLLVDVTPLSLGIETA----G-GVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGE-RAMTKDNNLLGTFDLTG 461 (2568)
Q Consensus 388 ~~~~~dv~p~sigi~~~----~-~~~~~ii~k~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~ig~~~i~~ 461 (2568)
++.+.|+.||++.+.+. + +....+|++|.++|..+..||.... .|.+.++++. ..++.....|++|++.+
T Consensus 390 ef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~ 465 (727)
T KOG0103|consen 390 EFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITG 465 (727)
T ss_pred ecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecc
Confidence 99999999999998754 2 3457899999999999888885533 5788888776 44555678899999999
Q ss_pred CCCCCC-CCCeEEEEEEecCCccEEEEEeecCC----------------------------Cc----eeeEEEecC-CCC
Q psy7639 462 IPPAPR-GVPKIDVTFDLDANGILNVTAKDTSS----------------------------GK----SQNITIKND-KGR 507 (2568)
Q Consensus 462 ~~~~~~-g~~~i~v~f~~d~~G~l~v~~~~~~~----------------------------~~----~~~~~i~~~-~~~ 507 (2568)
+.+... +..+++|+++++.+|++.|....... ++ ...+++... .+.
T Consensus 466 v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~ 545 (727)
T KOG0103|consen 466 VTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGA 545 (727)
T ss_pred cccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccc
Confidence 888766 46789999999999999987532110 10 011222222 246
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCH
Q psy7639 508 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECDATLKWL-DNNTLADK 585 (2568)
Q Consensus 508 ls~~e~~~~~~~~~~~~~~d~~~~~~~~~~N~LE~~iy~~~~~l~~~-~~~~~~~e~~~~~~~l~~~~~Wl-~~~~~a~~ 585 (2568)
|+..+++...+++.+|...|+...++.+++|.||+|||+||++|++. .++.+++++++|...|+++++|| ++|+|.++
T Consensus 546 l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k 625 (727)
T KOG0103|consen 546 LITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTK 625 (727)
T ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccch
Confidence 99999999999999999999999999999999999999999999875 57799999999999999999999 57999999
Q ss_pred HHHHHHHHHHHhhcccccccccC
Q psy7639 586 EEYQDKLQQLQKSCMPLMSKMHG 608 (2568)
Q Consensus 586 ~~~~~kl~~L~~~~~~i~~r~~e 608 (2568)
..|..||.+|+++++ ..|..+
T Consensus 626 ~~Y~~kl~elk~~g~--~~r~~e 646 (727)
T KOG0103|consen 626 AVYVAKLEELKKLGD--KKRFDE 646 (727)
T ss_pred HHHHHHHHHHHhhhh--hhhhhh
Confidence 999999999999998 444443
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-77 Score=818.90 Aligned_cols=588 Identities=48% Similarity=0.808 Sum_probs=534.0
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH 1455 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k~ 1455 (2568)
.|||+||++|++.++.+.+ |..|+|.|||+|+|.+. +|..|+.+...+|.++++++|||||+.++++.++...+.
T Consensus 5 D~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~~~~~ 84 (602)
T PF00012_consen 5 DLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQKEKKK 84 (602)
T ss_dssp EE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHHHHTT
T ss_pred EeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccchhhhc
Confidence 5899999999999988887 99999999999999554 699999999999999999999999999999999999999
Q ss_pred cccEEeeC-CCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1456 WPFTVVND-CSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1456 ~~~~~~~~-~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
+||.++.. .+++.+.+.+.+..+.|+|+++++++|++|++.++.++|..+.++||||||+|++.||++|++||++|||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~ 164 (602)
T PF00012_consen 85 FPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLN 164 (602)
T ss_dssp SSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-E
T ss_pred ccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccccccc
Confidence 99999876 55567777776666799999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
+++||+||+|||++|+..... .++++|||||||||||+|++++.+| .++++++.|+..+||.+||++|++|+.++|..
T Consensus 165 ~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~~~~~~~-~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~ 242 (602)
T PF00012_consen 165 VLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSVVEFSNG-QFEVLATAGDNNLGGRDFDEALAEYLLEKFKK 242 (602)
T ss_dssp EEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHH
T ss_pred cceeecccccccccccccccc-cccceeccccccceEeeeehhcccc-cccccccccccccccceecceeeccccccccc
Confidence 999999999999999887654 6789999999999999999999877 88999999999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCC--CCeeEEEEccccC-CcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHc
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSS--STEASIEIDALYD-GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDA 1691 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~--~~~~~i~i~~~~~-~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a 1691 (2568)
+++.+...+++.+.+|+.+||++|+.||. ..+..+.++.+.+ +.++.+.|||++|+++++|+++++..+|+++|+++
T Consensus 243 ~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~ 322 (602)
T PF00012_consen 243 KYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDA 322 (602)
T ss_dssp HHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccc
Confidence 99999888999999999999999999999 5666667766666 78899999999999999999999999999999999
Q ss_pred CCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeeccccccee
Q psy7639 1692 KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 1771 (2568)
Q Consensus 1692 ~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie 1771 (2568)
++...+|+.|+||||+||+|+||+.|++.|+ +.+...+||++|||+|||++|+.+++.. ..+++.+.|++|++|||+
T Consensus 323 ~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~~--~~~~~~~~d~~~~~~~i~ 399 (602)
T PF00012_consen 323 GLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGSF--RVKDIKIIDVTPFSIGIE 399 (602)
T ss_dssp T--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTSC--SSTSSCESEBESSEEEEE
T ss_pred cccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcccc--cccccccccccccccccc
Confidence 9999999999999999999999999999996 7788899999999999999999998743 346788999999999999
Q ss_pred ecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCe
Q psy7639 1772 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANG 1851 (2568)
Q Consensus 1772 ~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nG 1851 (2568)
..+|.+.+++++|+++|+..+..|++..++|+.+.|.||+|++....+|..||++.+.++++.|+|.++|+|+|++|.||
T Consensus 400 ~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~G 479 (602)
T PF00012_consen 400 VSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENG 479 (602)
T ss_dssp ETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTS
T ss_pred ccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Q psy7639 1852 ILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESE 1931 (2568)
Q Consensus 1852 iL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~~ 1931 (2568)
+|+|++.+..++.+..+++..... +++++++++.++++++..+|+.++++.+++|++|+++|+++..|++..+.+++++
T Consensus 480 il~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~ 558 (602)
T PF00012_consen 480 ILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSEEE 558 (602)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHH
T ss_pred ehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCHHH
Confidence 999999999999999999988655 9999999999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHHHhhcC-CccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1932 KSRCREECDATLKWLDNN-TLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1932 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+ .+.+++..+||+++ ..++.++|++|+++|++...||..++|+
T Consensus 559 ~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 559 K---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp H---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred H---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6 67788888999654 4667999999999999999999988874
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-72 Score=688.52 Aligned_cols=591 Identities=31% Similarity=0.487 Sum_probs=516.2
Q ss_pred cccccccCcccccchhhh-------ccCCCCceeeecccccccccccCCCceeecHHHHHhHhhCCCchHHhhhhhcCCC
Q psy7639 2 KESYIAEGPCAISPAQRR-------VMRDPGRVVERAALELRVKSLTNPLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRK 74 (2568)
Q Consensus 2 ~~~~~~~g~~~~~~a~~~-------~~~~~~~~~e~~~~~~~v~~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~ 74 (2568)
+.++||+|+..+++|++. |+++.+||+++..+.+. +++|++|++|.+++.++|++++.+++.|||++
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk------~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~ 96 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK------GGERIFGEAAASMATRFPQSTYRQLKDLLGKS 96 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec------CCceehhhhhhhhhhcCcHHHHHHHHHHhCcc
Confidence 568999999999999976 77777888777655554 58999999999999999999999999999999
Q ss_pred CCChhHHhhcccCCeEEEecC-CCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHH
Q psy7639 75 FDDPKIQQDMKHWPFTVVNDC-SKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQ 153 (2568)
Q Consensus 75 ~~d~~v~~~~~~~p~~~~~~~-~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~ 153 (2568)
.+||.++.+.++|||.-+..+ .+..+.+.+.+ ...|++|+|+||+|.+.+..|+.+...++.++|||||.||++.||+
T Consensus 97 ~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~ 175 (902)
T KOG0104|consen 97 LDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERR 175 (902)
T ss_pred cCCcHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHH
Confidence 999999999999998766644 68888888877 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecchhHHHHhhccccc---cCCCceEEEEEeCCcceEEEEeeecC------C---cEEEEEeec
Q psy7639 154 ATKDAGAIAGLNVMRIVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDE------G---ALFEVRSTA 221 (2568)
Q Consensus 154 al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~---~~~~~~vlV~D~GggT~Dvsv~~~~~------~---~~~~v~~~~ 221 (2568)
++.+||++||++++.||||.+||||.|++.+. ...++++||||||+|+|.++++.+.- | ..+++++++
T Consensus 176 all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvG 255 (902)
T KOG0104|consen 176 ALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVG 255 (902)
T ss_pred HHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeec
Confidence 99999999999999999999999999999864 35678999999999999999999831 2 468999999
Q ss_pred ccccccccchHHHHHHHHHHHHHhhhcc--cCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCcceEEeecHHH
Q psy7639 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKK--DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRAR 299 (2568)
Q Consensus 222 gd~~lGG~~~D~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~l~~~~d~~~~itR~e 299 (2568)
+|.+|||..|..+|.+||.+.|.++++. +++.+||+|++|.++|+++|..||+|.++.+.|++++++.||+.+|||++
T Consensus 256 fd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~ 335 (902)
T KOG0104|consen 256 FDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREE 335 (902)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHH
Confidence 9999999999999999999999998874 67889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHc
Q psy7639 300 FEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379 (2568)
Q Consensus 300 fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls 379 (2568)
||++|.++..|+..||+++|..++++..+|+.|+|+||+||+|.||+.|.++.+..++..++|+|||+++||+++||.||
T Consensus 336 fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS 415 (902)
T KOG0104|consen 336 FEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS 415 (902)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCCCcccccEEEEeeecccceeEeeCC--------ceeEEEEcCCccCccceEEEEeeecCCccEEEEEEecCcccccCC
Q psy7639 380 GDQSSAIQDVLLVDVTPLSLGIETAGG--------VMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDN 451 (2568)
Q Consensus 380 ~~~~~~~~~~~~~dv~p~sigi~~~~~--------~~~~ii~k~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~ 451 (2568)
..| +++++.+.|.++|+|-++.... ....+|++|.++|.++..+|+.+.|+ |.+.+-.|.- .
T Consensus 416 ksF--KvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~-----~ 485 (902)
T KOG0104|consen 416 KSF--KVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDL-----G 485 (902)
T ss_pred ccc--cccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhh-----c
Confidence 875 7888999999999998865432 23457999999999988888776654 4443332221 1
Q ss_pred cceeEEEecCCCCCC----C---CCCeEEEEEEecCCccEEEEEeecC---------------------C----------
Q psy7639 452 NLLGTFDLTGIPPAP----R---GVPKIDVTFDLDANGILNVTAKDTS---------------------S---------- 493 (2568)
Q Consensus 452 ~~ig~~~i~~~~~~~----~---g~~~i~v~f~~d~~G~l~v~~~~~~---------------------~---------- 493 (2568)
..+.+++++|+..+- . ....|+++|.+|.+|++.|.-.+.. +
T Consensus 486 ~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~ 565 (902)
T KOG0104|consen 486 QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDS 565 (902)
T ss_pred cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccc
Confidence 344588888877432 1 2467999999999999987532110 0
Q ss_pred -------------Cc-ee-------------------------------------eEEEe---cCCCCCCHHHHHHHHHH
Q psy7639 494 -------------GK-SQ-------------------------------------NITIK---NDKGRLSKEEIDRMIND 519 (2568)
Q Consensus 494 -------------~~-~~-------------------------------------~~~i~---~~~~~ls~~e~~~~~~~ 519 (2568)
++ .. .+.+. .+.+.|++..++....+
T Consensus 566 ~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~k 645 (902)
T KOG0104|consen 566 VQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAK 645 (902)
T ss_pred cchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHH
Confidence 00 00 01222 12345899999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHH
Q psy7639 520 AERYKDEDERQKERISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWL-DNNTLADKEEYQDKLQQLQ 596 (2568)
Q Consensus 520 ~~~~~~~d~~~~~~~~~~N~LE~~iy~~~~~l~~~--~~~~~~~e~~~~~~~l~~~~~Wl-~~~~~a~~~~~~~kl~~L~ 596 (2568)
+..+...|+.+.+++++.|+||+|+|+++++|++. ..+.+++|+..|++.+..+.+|| +++.++++++|.+++.+|+
T Consensus 646 l~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~ 725 (902)
T KOG0104|consen 646 LEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELK 725 (902)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999864 48899999999999999999999 5688899999999999999
Q ss_pred hhcccccccccCC
Q psy7639 597 KSCMPLMSKMHGG 609 (2568)
Q Consensus 597 ~~~~~i~~r~~e~ 609 (2568)
+++..+..|.++.
T Consensus 726 ~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 726 KLETSKNFREEER 738 (902)
T ss_pred HHHhhhhHHHHHH
Confidence 9999999998763
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=484.49 Aligned_cols=297 Identities=28% Similarity=0.363 Sum_probs=255.7
Q ss_pred CCCChhHHHHhhhhcCCcch--HhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNT--VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVL 2063 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t--~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL 2063 (2568)
+..++|..|+.+...+|.++ +.++||+||...-++ . ....||+|++++|
T Consensus 84 ~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~----------------------------~-~~~~~e~l~a~iL 134 (450)
T PRK11678 84 QSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP----------------------------Q-QVALFEDLVCAMM 134 (450)
T ss_pred cccchhHHHHHhhccCCCCceEEecchhhhccCCCCc----------------------------c-ceeCHHHHHHHHH
Confidence 56789999999999999999 779999999652100 0 2234999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEccCCCC-----HHHHHH---HHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEE
Q psy7639 2064 TKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQA---TKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 2135 (2568)
Q Consensus 2064 ~~lk~~ae~~~g~~v~~aVItVPa~f~-----~~qR~a---~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vl 2135 (2568)
++||+.|+.++|.++.+||||||+||+ +.||+| +++||++|||++++|||||||||++||.... .++++|
T Consensus 135 ~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~--~~~~vl 212 (450)
T PRK11678 135 LHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT--EEKRVL 212 (450)
T ss_pred HHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--CCCeEE
Confidence 999999999999999999999999999 899988 5999999999999999999999999997543 568899
Q ss_pred EEeeCCeeeEEEEEEEcCCc------EEEEEEeccCCCcchhHHHHHHH-HHHHHHHHH----HhCCCC-----------
Q psy7639 2136 IFDLGGGTFDVSILSIDEGA------LFEVRSTAGDTHLGGEDFDNRLV-SHLAEEFKR----KYKKDM----------- 2193 (2568)
Q Consensus 2136 v~DlGggt~dvsil~~~~g~------~~~v~~~~gd~~lGG~d~D~~l~-~~~~~~f~~----~~~~d~----------- 2193 (2568)
||||||||||+||+++.++. ..+|+|++|+ +|||+|||.+|+ +|+...|.+ +++.++
T Consensus 213 V~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G~-~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~ 291 (450)
T PRK11678 213 VVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAI 291 (450)
T ss_pred EEEeCCCeEEEEEEEecCcccccCCcceeEEecCCC-CCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhh
Confidence 99999999999999996431 3689999995 799999999998 688888742 222211
Q ss_pred ------------------------CCCHHHHH------------HHHHHHHHHhhccCCcceeEEEEecccCCcceEEee
Q psy7639 2194 ------------------------SVNPRALR------------RLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKI 2237 (2568)
Q Consensus 2194 ------------------------~~~~~~~~------------~L~~~~e~~K~~LS~~~~~~~~i~~~~~~~d~~~~i 2237 (2568)
..+|++++ +|+.+||+||+.||.+.++.+.++++. .++..+|
T Consensus 292 ~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~I 369 (450)
T PRK11678 292 NDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEI 369 (450)
T ss_pred hccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcceee
Confidence 12455554 688999999999999999999998765 4578999
Q ss_pred CHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCCCCCcchhHHhhHHHHH
Q psy7639 2238 SRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 2317 (2568)
Q Consensus 2238 tr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~npdeava~GAa~~a 2317 (2568)
||++||++++++++++.++|+++|++++++ +|.|+||||+||||.|++.|+++||+.++ ...+|+++||.|+|+.|
T Consensus 370 tR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~sVa~Gla~~a 445 (450)
T PRK11678 370 SQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFGSVTAGLARWA 445 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcchHHHHHHHHH
Confidence 999999999999999999999999999987 47899999999999999999999966554 57899999999999998
Q ss_pred HHh
Q psy7639 2318 AIL 2320 (2568)
Q Consensus 2318 a~l 2320 (2568)
+.+
T Consensus 446 ~~~ 448 (450)
T PRK11678 446 QVV 448 (450)
T ss_pred Hhh
Confidence 753
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=481.47 Aligned_cols=329 Identities=27% Similarity=0.309 Sum_probs=278.6
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccc-----------------------------------------hh-
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRC-----------------------------------------RE- 1416 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~-----------------------------------------~~- 1416 (2568)
.||||||++|+|.++.+++ +.+|++++||+|+|. +.
T Consensus 6 D~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T PRK11678 6 DYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDVTAQS 85 (450)
T ss_pred ecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccccccc
Confidence 6999999999999998887 888999999999993 11
Q ss_pred --hhhHHHHhhhcCCCcc--ccccccccccccCChhhhhcccccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHH
Q psy7639 1417 --ECDAAKNQVAMNPKNT--VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 1492 (2568)
Q Consensus 1417 --~G~~A~~~~~~~p~~t--v~~~k~~ig~~~~d~~~~~~~k~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~ 1492 (2568)
+|+.|+++...+|.++ +.++||+||...-.+ .....|+++++++|++
T Consensus 86 ~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~-----------------------------~~~~~~e~l~a~iL~~ 136 (450)
T PRK11678 86 VFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP-----------------------------QQVALFEDLVCAMMLH 136 (450)
T ss_pred cchhHHHHHhhccCCCCceEEecchhhhccCCCCc-----------------------------cceeCHHHHHHHHHHH
Confidence 5999999999999999 779999999753100 1112389999999999
Q ss_pred HHHHHHHHhCCccceEEEEecCCCC-----HHHHHH---HHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEE
Q psy7639 1493 MKETAEAYLGHSVRDAVITVPAYFN-----DAQRQA---TKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIF 1564 (2568)
Q Consensus 1493 lk~~ae~~l~~~~~~~ViTVPa~f~-----~~qR~~---~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~ 1564 (2568)
||+.++.++|.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+... ..++++|||
T Consensus 137 lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~--~~~~~vlV~ 214 (450)
T PRK11678 137 IKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL--TEEKRVLVV 214 (450)
T ss_pred HHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc--CCCCeEEEE
Confidence 9999999999999999999999999 888876 699999999999999999999999998654 357889999
Q ss_pred EeCCcceEEEEEEecCCc------EEEEEEecCCCCCChhHHHHHHH-HHHHHHHHhh----hcCC--------------
Q psy7639 1565 DLGGGTFDVSILSIDEGA------LFEVRSTAGDTHLGGEDFDNRLV-SHLAEEFKRK----YKKD-------------- 1619 (2568)
Q Consensus 1565 D~GGGT~Dvsi~~~~~g~------~~ev~~~~gd~~lGG~d~D~~l~-~~l~~~~~~~----~~~~-------------- 1619 (2568)
||||||||+||+++.++. ..+|++++| .++||.|||.+|+ +++..+|.+. .+.+
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 999999999999985431 468999999 5799999999998 5777777521 1110
Q ss_pred ---------------------CCCCHHHHH------------HHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCH
Q psy7639 1620 ---------------------MSVNPRALR------------RLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISR 1666 (2568)
Q Consensus 1620 ---------------------~~~~~~~~~------------~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr 1666 (2568)
...++..+. +|+.+||++|+.||....+.+.++... .++..+|||
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ItR 371 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEISQ 371 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcceeeCH
Confidence 011333333 688999999999999999999887654 346789999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHH
Q psy7639 1667 ARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 1746 (2568)
Q Consensus 1667 ~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~ 1746 (2568)
++|+++++|+++++..+|+++|+++++. ++.|+||||+|+||.|++.|++.|++.++. ..+|.++||.|+|++|..
T Consensus 372 ~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 372 QGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHHHHHh
Confidence 9999999999999999999999999876 478999999999999999999999765554 569999999999999865
Q ss_pred H
Q psy7639 1747 L 1747 (2568)
Q Consensus 1747 l 1747 (2568)
+
T Consensus 448 ~ 448 (450)
T PRK11678 448 V 448 (450)
T ss_pred h
Confidence 4
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=338.23 Aligned_cols=245 Identities=22% Similarity=0.384 Sum_probs=201.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceE
Q psy7639 2055 PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV 2134 (2568)
Q Consensus 2055 peei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~v 2134 (2568)
+.+++..+|+++.+.+....+.....+|||||+||++.||+++++|++.||++++++|+||+|||++||++.. .+..+
T Consensus 72 d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~ 149 (336)
T PRK13928 72 DYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS--QPSGN 149 (336)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc--CCCeE
Confidence 3456666777776544433233344799999999999999999999999999999999999999999998653 45679
Q ss_pred EEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhcc
Q psy7639 2135 LIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTL 2214 (2568)
Q Consensus 2135 lv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~L 2214 (2568)
+|||+||||||+|++... + .+ +.++..+||+|||+.|++|+..+|... +. ..+||++|+.+
T Consensus 150 lVvDiGggttdvsvv~~g-~-~~----~~~~~~lGG~did~~i~~~l~~~~~~~----~~---------~~~ae~lK~~~ 210 (336)
T PRK13928 150 MVVDIGGGTTDIAVLSLG-G-IV----TSSSIKVAGDKFDEAIIRYIRKKYKLL----IG---------ERTAEEIKIKI 210 (336)
T ss_pred EEEEeCCCeEEEEEEEeC-C-EE----EeCCcCCHHHHHHHHHHHHHHHHhchh----cC---------HHHHHHHHHHh
Confidence 999999999999999974 3 22 456889999999999999998766422 21 25699999998
Q ss_pred CCc----ceeEEEE--ecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcC--CCccCcc-eEEEecCccChHH
Q psy7639 2215 SSS----TEASIEI--DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAK--LDKSAIH-DVVLVGGSTRIPK 2285 (2568)
Q Consensus 2215 S~~----~~~~~~i--~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~--~~~~~i~-~vilvGGstriP~ 2285 (2568)
+.. ....+.+ ..+..+.++..+|||++|++++.++++++.++++++|+.++ +..+.++ .|+|+||+|+||.
T Consensus 211 ~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipg 290 (336)
T PRK13928 211 GTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHG 290 (336)
T ss_pred cccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhh
Confidence 763 1233333 23456677889999999999999999999999999999997 5678888 7999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHHhh
Q psy7639 2286 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321 (2568)
Q Consensus 2286 v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~ls 2321 (2568)
|++.|++.| +.++....||++|||+|||++++.+.
T Consensus 291 i~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 291 LDKLLAEET-KVPVYIAEDPISCVALGTGKMLENID 325 (336)
T ss_pred HHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhchH
Confidence 999999999 56777788999999999999998753
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=337.72 Aligned_cols=308 Identities=21% Similarity=0.333 Sum_probs=238.2
Q ss_pred cccccCcccccchhhhccCCCCceeeecccccccccccCC-Cc-eeecHHHHHhHhhCCCchHHhhhhhcCCCCCChhHH
Q psy7639 4 SYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTNP-LS-YFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQ 81 (2568)
Q Consensus 4 ~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~~-~~-~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~ 81 (2568)
+||||||++|+++.. ..| +...+.+++.+... ++ +.+|+.|++++.+.|.+.... +++.+
T Consensus 6 ~gIDlGt~~~~i~~~----~~~----~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~pi~~---- 67 (336)
T PRK13928 6 IGIDLGTANVLVYVK----GKG----IVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------RPLRD---- 67 (336)
T ss_pred eEEEcccccEEEEEC----CCC----EEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------ccCCC----
Confidence 799999999999774 222 23336788888743 23 479999999888887775421 11111
Q ss_pred hhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q psy7639 82 QDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 161 (2568)
Q Consensus 82 ~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa~~ 161 (2568)
..+...+....+|+++.+.+..........+|||||++|+..||+++++|++.
T Consensus 68 ---------------------------G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ 120 (336)
T PRK13928 68 ---------------------------GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQ 120 (336)
T ss_pred ---------------------------CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 12233456677778887655433223345799999999999999999999999
Q ss_pred cCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHH
Q psy7639 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (2568)
Q Consensus 162 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~ 241 (2568)
||++.+.+++||+|||++|+.+. ..+..++|||+||||||+++++.. ..+ ..++..+||++||+.|.+++.+
T Consensus 121 ag~~~~~li~ep~Aaa~~~g~~~--~~~~~~lVvDiGggttdvsvv~~g--~~~----~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 121 AGAKKVYLIEEPLAAAIGAGLDI--SQPSGNMVVDIGGGTTDIAVLSLG--GIV----TSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred cCCCceEecccHHHHHHHcCCcc--cCCCeEEEEEeCCCeEEEEEEEeC--CEE----EeCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998853 346779999999999999999873 221 2356899999999999999987
Q ss_pred HHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCC----ceEEEEe--eeccCcceEEeecHHHHHHHHhhhhhhhHHHH
Q psy7639 242 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----EASIEID--ALYDGIDFYTKISRARFEELCSDLFRSTLQPV 315 (2568)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----~~~i~i~--~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i 315 (2568)
++...+ . ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.++++++...+
T Consensus 193 ~~~~~~----~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i 259 (336)
T PRK13928 193 KYKLLI----G---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAV 259 (336)
T ss_pred Hhchhc----C---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHH
Confidence 664211 1 247999999987531 1233332 23445677899999999999999999999999
Q ss_pred HHHHHHcC--CCCCCCC-eEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHH
Q psy7639 316 EKALQDAK--LDKSAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 316 ~~~l~~a~--~~~~~i~-~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~l 378 (2568)
++.|+.++ +....++ .|+|+||+|++|.++++|++.| +.++....||++|||+|||+++..+
T Consensus 260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999987 3445677 7999999999999999999999 6778788899999999999998765
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=333.97 Aligned_cols=307 Identities=22% Similarity=0.348 Sum_probs=244.2
Q ss_pred cccccccCcccccchhhhccCCCCceeeecccccccccccCCCc--eeecHHHHHhHhhCCCchHHhhhhhcCCCCCChh
Q psy7639 2 KESYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTNPLS--YFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPK 79 (2568)
Q Consensus 2 ~~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~~~~--~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 79 (2568)
..+||||||+++.+. . .++. +..++.+++.+..... .+||++|+++..++|.++... | ++.+
T Consensus 5 ~~~giDlGt~~~~i~-----~-~~~~--~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi~~-- 68 (335)
T PRK13929 5 TEIGIDLGTANILVY-----S-KNKG--IILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PMKD-- 68 (335)
T ss_pred CeEEEEcccccEEEE-----E-CCCc--EEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cCCC--
Confidence 358999999999742 1 2332 4568999999975443 689999999999999987553 2 2111
Q ss_pred HHhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEEecCCCCHHHHHHHHH
Q psy7639 80 IQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKD 157 (2568)
Q Consensus 80 v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~--~~VITVPa~f~~~qr~al~~ 157 (2568)
| .+..-++++++|++++..++..++..+. .+|||||++|++.||+++.+
T Consensus 69 --------------------------G---~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~ 119 (335)
T PRK13929 69 --------------------------G---VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD 119 (335)
T ss_pred --------------------------C---ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH
Confidence 0 1122278899999999999888886654 89999999999999999999
Q ss_pred HHHHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHH
Q psy7639 158 AGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237 (2568)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~ 237 (2568)
|++.||++++.+++||+|||++|+... ..+..++|+|+||||||++++++. + .. ..++..+||.+||+.|.+
T Consensus 120 a~~~ag~~~~~li~ep~Aaa~~~g~~~--~~~~~~lvvDiG~gtt~v~vi~~~-~-~~----~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 120 AVKNCGAKNVHLIEEPVAAAIGADLPV--DEPVANVVVDIGGGTTEVAIISFG-G-VV----SCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HHHHcCCCeeEeecCHHHHHHhcCCCc--CCCceEEEEEeCCCeEEEEEEEeC-C-EE----EecCcCCHHHHHHHHHHH
Confidence 999999999999999999999998753 346789999999999999999863 2 21 234578999999999999
Q ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCC----ceEEEEe--eeccCcceEEeecHHHHHHHHhhhhhhh
Q psy7639 238 HLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----EASIEID--ALYDGIDFYTKISRARFEELCSDLFRST 311 (2568)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----~~~i~i~--~l~~~~d~~~~itR~efe~l~~~l~~~i 311 (2568)
++.+.+. ... + ...||++|+.++... ...+.+. .+..+.+..+.++|++|+++|.+++.++
T Consensus 192 ~l~~~~~----~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i 258 (335)
T PRK13929 192 FVRKKYN----LLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHI 258 (335)
T ss_pred HHHHHhC----cCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHH
Confidence 9876542 221 1 257999999998632 2223332 2334556789999999999999999999
Q ss_pred HHHHHHHHHHcCCCC--CCCC-eEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHH
Q psy7639 312 LQPVEKALQDAKLDK--SAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 375 (2568)
Q Consensus 312 ~~~i~~~l~~a~~~~--~~i~-~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~a 375 (2568)
...|.++|+.++... ..++ .|+|+||+|++|.++++|++.| +.++....||+++||.||+..-
T Consensus 259 ~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 259 LEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 999999999987543 5577 6999999999999999999999 6788878899999999999864
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=328.93 Aligned_cols=271 Identities=22% Similarity=0.385 Sum_probs=223.2
Q ss_pred CChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHHHHHH
Q psy7639 1988 PRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMK 2067 (2568)
Q Consensus 1988 ~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~lk 2067 (2568)
..||+.|+.+..++|.++... | ++.+ | ....-++++++|++++
T Consensus 43 ~~vG~~A~~~~~~~p~~~~~~--~----pi~~------------------G-------------~I~d~d~~~~~l~~~~ 85 (335)
T PRK13929 43 LAIGTEAKNMIGKTPGKIVAV--R----PMKD------------------G-------------VIADYDMTTDLLKQIM 85 (335)
T ss_pred EEeCHHHHHhhhcCCCcEEEE--e----cCCC------------------C-------------ccCCHHHHHHHHHHHH
Confidence 579999999999999887652 2 2111 1 1122279999999999
Q ss_pred HHHHHHhCCCcc--cEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeE
Q psy7639 2068 ETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 2145 (2568)
Q Consensus 2068 ~~ae~~~g~~v~--~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~d 2145 (2568)
+.|+.++|..+. .+|||||+||++.||+++.+|++.||+++++||+||+|||++||+... .+..++|||+||||+|
T Consensus 86 ~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lvvDiG~gtt~ 163 (335)
T PRK13929 86 KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD--EPVANVVVDIGGGTTE 163 (335)
T ss_pred HHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC--CCceEEEEEeCCCeEE
Confidence 999999987665 799999999999999999999999999999999999999999998653 4578999999999999
Q ss_pred EEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcc----eeE
Q psy7639 2146 VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----EAS 2221 (2568)
Q Consensus 2146 vsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~ 2221 (2568)
++++.+. | .+ ..++..+||+|||+.|++||.+.+ +.... ...||++|+.|+... ...
T Consensus 164 v~vi~~~-~-~~----~~~~~~~GG~~id~~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~ 224 (335)
T PRK13929 164 VAIISFG-G-VV----SCHSIRIGGDQLDEDIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPET 224 (335)
T ss_pred EEEEEeC-C-EE----EecCcCCHHHHHHHHHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCce
Confidence 9999874 4 22 356788999999999999997644 33321 257999999998732 223
Q ss_pred EEEe--cccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCC--ccCcc-eEEEecCccChHHHHHHHHHhcCC
Q psy7639 2222 IEID--ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLD--KSAIH-DVVLVGGSTRIPKVQSLLQNFFCG 2296 (2568)
Q Consensus 2222 ~~i~--~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~--~~~i~-~vilvGGstriP~v~~~l~~~f~~ 2296 (2568)
+.+. ++..+....++|+|++|++++.+++.++.+.+.++|+++... .+.++ .|+|+||+|+||.+++.|++.| +
T Consensus 225 ~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~ 303 (335)
T PRK13929 225 MEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-V 303 (335)
T ss_pred EEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-C
Confidence 3332 344566678999999999999999999999999999998644 47788 5999999999999999999999 5
Q ss_pred CCCCCCCCcchhHHhhHHHHH
Q psy7639 2297 KSLNLSINPDEAVAYGAAVQA 2317 (2568)
Q Consensus 2297 ~~~~~~~npdeava~GAa~~a 2317 (2568)
.++....||+++||+||+..-
T Consensus 304 ~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 304 VPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred CCceeCCCHHHHHHHHHHHHH
Confidence 677778899999999999764
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=309.32 Aligned_cols=308 Identities=22% Similarity=0.338 Sum_probs=227.1
Q ss_pred ccccccCcccccchhhhccCCCCceeeecccccccccccCC------CceeecHHHHHhHhhCCCchHHhhhhhcCCCCC
Q psy7639 3 ESYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTNP------LSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFD 76 (2568)
Q Consensus 3 ~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~~------~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~ 76 (2568)
..||||||++|.++.. ++ .+...+.+++.+.+. .-++||+.|+.++.+.|.++. +++-|...
T Consensus 4 ~~giDlGt~~s~i~~~------~~--~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~~G-- 71 (333)
T TIGR00904 4 DIGIDLGTANTLVYVK------GR--GIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMKDG-- 71 (333)
T ss_pred eeEEecCcceEEEEEC------CC--CEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCCCC--
Confidence 3899999999998773 21 223457888898643 237899999998888887753 23222110
Q ss_pred ChhHHhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHH
Q psy7639 77 DPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATK 156 (2568)
Q Consensus 77 d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~ 156 (2568)
+ .... +.+..+++++........+.....+|||||++|+..+|++++
T Consensus 72 -----------------------~---------i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~ 118 (333)
T TIGR00904 72 -----------------------V---------IADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVK 118 (333)
T ss_pred -----------------------E---------EEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHH
Confidence 0 0111 223334444443332222222238999999999999999999
Q ss_pred HHHHHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHH
Q psy7639 157 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236 (2568)
Q Consensus 157 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~ 236 (2568)
+|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++. + . + ..++..+||++||+.|+
T Consensus 119 ~~~~~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lVvDiG~gttdvs~v~~~-~-~--~--~~~~~~lGG~did~~l~ 190 (333)
T TIGR00904 119 ESALSAGAREVYLIEEPMAAAIGAGLPV--EEPTGSMVVDIGGGTTEVAVISLG-G-I--V--VSRSIRVGGDEFDEAII 190 (333)
T ss_pred HHHHHcCCCeEEEecCHHHHHHhcCCcc--cCCceEEEEEcCCCeEEEEEEEeC-C-E--E--ecCCccchHHHHHHHHH
Confidence 9999999999999999999999998753 346679999999999999999874 2 1 1 23456899999999999
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCc-----eEEEEee--eccCcceEEeecHHHHHHHHhhhhh
Q psy7639 237 SHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE-----ASIEIDA--LYDGIDFYTKISRARFEELCSDLFR 309 (2568)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~-----~~i~i~~--l~~~~d~~~~itR~efe~l~~~l~~ 309 (2568)
+++.+++. ... . +..||++|+.++.... ..+.+.. ...+.+....|+|++|.+++.+.+.
T Consensus 191 ~~l~~~~~----~~~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 257 (333)
T TIGR00904 191 NYIRRTYN----LLI--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVN 257 (333)
T ss_pred HHHHHHhc----ccC--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHH
Confidence 99876542 111 1 3578999999975322 2222211 1223445678999999999999999
Q ss_pred hhHHHHHHHHHHcCCCC-CCC-C-eEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHH
Q psy7639 310 STLQPVEKALQDAKLDK-SAI-H-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 310 ~i~~~i~~~l~~a~~~~-~~i-~-~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ 377 (2568)
++...+.+.|+.++... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 258 ~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 258 QIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999987542 233 3 6999999999999999999999 678888899999999999998654
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=310.31 Aligned_cols=308 Identities=21% Similarity=0.347 Sum_probs=228.9
Q ss_pred ccccccCcccccchhhhccCCCCceeeecccccccccccCC-C-ceeecHHHHHhHhhCCCchHHhhhhhcCCCCCChhH
Q psy7639 3 ESYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTNP-L-SYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKI 80 (2568)
Q Consensus 3 ~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~~-~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 80 (2568)
..||||||+++++... |+-. ..+..+++.++.. . .++||+.|+++..+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~~------~~~~--~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~-------------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVK------GKGI--VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI-------------- 64 (334)
T ss_pred eeEEEcCcceEEEEEC------CCcE--EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--------------
Confidence 3799999999997432 2222 3357888888654 3 3589999999998888875321
Q ss_pred HhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHHH
Q psy7639 81 QQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (2568)
Q Consensus 81 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa~ 160 (2568)
+|+. + +.. ..+ +.+..+|+++.......... ...+|||||++|++.+|+++++|++
T Consensus 65 ------~pi~------~-G~i-------~d~---~~~~~ll~~~~~~~~~~~~~-~~~~vi~vP~~~~~~~r~~~~~a~~ 120 (334)
T PRK13927 65 ------RPMK------D-GVI-------ADF---DVTEKMLKYFIKKVHKNFRP-SPRVVICVPSGITEVERRAVRESAL 120 (334)
T ss_pred ------ecCC------C-Cee-------cCH---HHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1110 0 000 011 22344455544433222221 2489999999999999999999999
Q ss_pred HcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHH
Q psy7639 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (2568)
Q Consensus 161 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~ 240 (2568)
.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.. . . ..++.++||.+||+.|.+++.
T Consensus 121 ~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lvvDiGggttdvs~v~~~~--~-~---~~~~~~lGG~~id~~l~~~l~ 192 (334)
T PRK13927 121 GAGAREVYLIEEPMAAAIGAGLPV--TEPTGSMVVDIGGGTTEVAVISLGG--I-V---YSKSVRVGGDKFDEAIINYVR 192 (334)
T ss_pred HcCCCeeccCCChHHHHHHcCCcc--cCCCeEEEEEeCCCeEEEEEEecCC--e-E---eeCCcCChHHHHHHHHHHHHH
Confidence 999999999999999999998753 3456789999999999999998742 1 1 234468999999999999997
Q ss_pred HHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCc----eEEEE--eeeccCcceEEeecHHHHHHHHhhhhhhhHHH
Q psy7639 241 EEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE----ASIEI--DALYDGIDFYTKISRARFEELCSDLFRSTLQP 314 (2568)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~----~~i~i--~~l~~~~d~~~~itR~efe~l~~~l~~~i~~~ 314 (2568)
+++. ... + ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+.++...
T Consensus 193 ~~~~----~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 259 (334)
T PRK13927 193 RNYN----LLI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEA 259 (334)
T ss_pred HHhC----cCc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHH
Confidence 6553 211 1 2468999999875332 22333 23345566788999999999999999999999
Q ss_pred HHHHHHHcCCCC--CCCC-eEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHH
Q psy7639 315 VEKALQDAKLDK--SAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 315 i~~~l~~a~~~~--~~i~-~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~l 378 (2568)
|.++|+.++... ..++ .|+|+||+|++|.++++|++.| +.++....||+++||+|||+++..+
T Consensus 260 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 260 VKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 999999986432 2244 5999999999999999999999 5778888899999999999998753
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=309.99 Aligned_cols=220 Identities=24% Similarity=0.424 Sum_probs=184.0
Q ss_pred ccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeEEEEEEEcCCcEEE
Q psy7639 2079 RDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFE 2158 (2568)
Q Consensus 2079 ~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~~~~g~~~~ 2158 (2568)
..+|||||++|++.||+++++|++.||++++++++||+|||++||+... .+..++|||+||||||++++++. | .
T Consensus 97 ~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lvvDiGggttdvs~v~~~-~-~-- 170 (334)
T PRK13927 97 PRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT--EPTGSMVVDIGGGTTEVAVISLG-G-I-- 170 (334)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEecC-C-e--
Confidence 3899999999999999999999999999999999999999999998653 35678999999999999999875 4 2
Q ss_pred EEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcce----eEEEE--ecccCCcc
Q psy7639 2159 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE----ASIEI--DALYDGID 2232 (2568)
Q Consensus 2159 v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~----~~~~i--~~~~~~~d 2232 (2568)
...++.++||+|||+.|.+|+.++| +... + ...||++|+.|+.... ..+.+ +++..+.+
T Consensus 171 --~~~~~~~lGG~~id~~l~~~l~~~~----~~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (334)
T PRK13927 171 --VYSKSVRVGGDKFDEAIINYVRRNY----NLLI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLP 235 (334)
T ss_pred --EeeCCcCChHHHHHHHHHHHHHHHh----CcCc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCC
Confidence 1346678999999999999997654 3322 1 2468999999886432 22333 34556777
Q ss_pred eEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCC--ccCcc-eEEEecCccChHHHHHHHHHhcCCCCCCCCCCcchhH
Q psy7639 2233 FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLD--KSAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 2309 (2568)
Q Consensus 2233 ~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~--~~~i~-~vilvGGstriP~v~~~l~~~f~~~~~~~~~npdeav 2309 (2568)
+.++|+|++|++++.++++++.+.+.++|+++... .+.++ .|+|+||+|+||.+++.|++.| +.++....||+++|
T Consensus 236 ~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~av 314 (334)
T PRK13927 236 KTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCV 314 (334)
T ss_pred eEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHH
Confidence 88999999999999999999999999999998754 33344 5999999999999999999999 56777788999999
Q ss_pred HhhHHHHHHHh
Q psy7639 2310 AYGAAVQAAIL 2320 (2568)
Q Consensus 2310 a~GAa~~aa~l 2320 (2568)
|+|||+++..+
T Consensus 315 a~Ga~~~~~~~ 325 (334)
T PRK13927 315 ARGTGKALENI 325 (334)
T ss_pred HHHHHHHHhhH
Confidence 99999998763
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=299.76 Aligned_cols=238 Identities=22% Similarity=0.394 Sum_probs=189.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEE
Q psy7639 2056 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 2135 (2568)
Q Consensus 2056 eei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vl 2135 (2568)
+++...+|.++.+.. +..-..+|||||++|++.||+++.+|++.||++++++++||+|||++||+... .+..++
T Consensus 80 ~~~~~~~l~~~~~~~----~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~l 153 (333)
T TIGR00904 80 EKMIKYFIKQVHSRK----SFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSM 153 (333)
T ss_pred HHHHHHHHHHHhccc----ccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEE
Confidence 445555555544322 22223899999999999999999999999999999999999999999998643 456799
Q ss_pred EEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccC
Q psy7639 2136 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 2215 (2568)
Q Consensus 2136 v~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS 2215 (2568)
|||+||||||++++++. | . ...++.++||+|||+.|++|+.++| +.... +.+||++|+.|+
T Consensus 154 VvDiG~gttdvs~v~~~-~-~----~~~~~~~lGG~did~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~ 214 (333)
T TIGR00904 154 VVDIGGGTTEVAVISLG-G-I----VVSRSIRVGGDEFDEAIINYIRRTY----NLLIG---------EQTAERIKIEIG 214 (333)
T ss_pred EEEcCCCeEEEEEEEeC-C-E----EecCCccchHHHHHHHHHHHHHHHh----cccCC---------HHHHHHHHHHHh
Confidence 99999999999999885 4 2 2346778999999999999988654 32221 357999999997
Q ss_pred Ccce-----eEEEEec--ccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCc-cCc-c-eEEEecCccChHH
Q psy7639 2216 SSTE-----ASIEIDA--LYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDK-SAI-H-DVVLVGGSTRIPK 2285 (2568)
Q Consensus 2216 ~~~~-----~~~~i~~--~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~-~~i-~-~vilvGGstriP~ 2285 (2568)
.... ..+.+.. ...+......|+|++|++++.+.+.++.+.+.++|+.+.... .++ + .|+|+||+|+||.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipg 294 (333)
T TIGR00904 215 SAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRN 294 (333)
T ss_pred ccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhh
Confidence 6322 2233321 123344567999999999999999999999999999987653 355 3 6999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHH
Q psy7639 2286 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 2319 (2568)
Q Consensus 2286 v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~ 2319 (2568)
+++.|++.| +.++....||+++||.|||+++..
T Consensus 295 l~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 295 LDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 999999999 577788899999999999998754
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-27 Score=297.68 Aligned_cols=308 Identities=22% Similarity=0.330 Sum_probs=231.6
Q ss_pred cccccCcccccchhhhccCCCCceeeecccccccccccC--CCceeecHHHHHhHhhCCCchHHhhhhhcCCCCCChhHH
Q psy7639 4 SYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTN--PLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQ 81 (2568)
Q Consensus 4 ~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~--~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~ 81 (2568)
+||||||++++++.. ..+ + ..++.+++.+.. ...++||++|++...+.|.++- ++
T Consensus 11 vgiDlGt~~t~i~~~----~~~--~--~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~------------- 67 (335)
T PRK13930 11 IGIDLGTANTLVYVK----GKG--I--VLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI------------- 67 (335)
T ss_pred eEEEcCCCcEEEEEC----CCC--E--EEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee-------------
Confidence 899999999999874 222 2 234677788754 2357999999998877776632 11
Q ss_pred hhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q psy7639 82 QDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 161 (2568)
Q Consensus 82 ~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa~~ 161 (2568)
+|+. ++ .+..-+.+..+|+++.+.+..........+|||+|++|+..+|+++.+|++.
T Consensus 68 -----~pi~------~G-----------~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~ 125 (335)
T PRK13930 68 -----RPLK------DG-----------VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEH 125 (335)
T ss_pred -----ecCC------CC-----------eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 1210 00 1111234677777777665544444467899999999999999999999999
Q ss_pred cCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHH
Q psy7639 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (2568)
Q Consensus 162 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~ 241 (2568)
+|++.+.+++||+|||++|+... ..+..++|||+||||||++++.. +... ..+...+||.+||+.|.+++.+
T Consensus 126 ~g~~~~~lv~ep~AAa~a~g~~~--~~~~~~lVvDiG~gttdvs~v~~--g~~~----~~~~~~lGG~~id~~l~~~l~~ 197 (335)
T PRK13930 126 AGAREVYLIEEPMAAAIGAGLPV--TEPVGNMVVDIGGGTTEVAVISL--GGIV----YSESIRVAGDEMDEAIVQYVRR 197 (335)
T ss_pred cCCCeEEecccHHHHHHhcCCCc--CCCCceEEEEeCCCeEEEEEEEe--CCEE----eecCcCchhHHHHHHHHHHHHH
Confidence 99999999999999999998753 23456899999999999999976 3222 2455789999999999999877
Q ss_pred HHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCc----eEEEEe--eeccCcceEEeecHHHHHHHHhhhhhhhHHHH
Q psy7639 242 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE----ASIEID--ALYDGIDFYTKISRARFEELCSDLFRSTLQPV 315 (2568)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~----~~i~i~--~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i 315 (2568)
++. .+. + ...||++|+.++.... ..+.+. .+..+.+..+.|+|++|++++.+.++++.+.+
T Consensus 198 ~~~----~~~--~-------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i 264 (335)
T PRK13930 198 KYN----LLI--G-------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAV 264 (335)
T ss_pred HhC----CCC--C-------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHH
Confidence 642 211 1 2478999999976432 123332 22334556789999999999999999999999
Q ss_pred HHHHHHcCCCC--CCCCe-EEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHH
Q psy7639 316 EKALQDAKLDK--SAIHD-VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 316 ~~~l~~a~~~~--~~i~~-ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~l 378 (2568)
.++|+.++... ..++. |+|+||+|++|.++++|++.| +.++....+|+++||+|||+.+...
T Consensus 265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 99999876332 23454 999999999999999999999 5677778899999999999998643
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=283.79 Aligned_cols=204 Identities=23% Similarity=0.346 Sum_probs=176.6
Q ss_pred eeChhhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCc
Q psy7639 2052 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGE 2131 (2568)
Q Consensus 2052 ~~~peei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~ 2131 (2568)
....-+..+++|++|++.|+.++|.++.+||||||+||++.||+++.+|++.|||+++++++||+|||++|++.
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy7639 2132 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAK 2211 (2568)
Q Consensus 2132 ~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K 2211 (2568)
..+|+|+||||||+++++ +| .++. ..+..+||++||+.|.++ ++++ ..+||++|
T Consensus 109 -~~~vvDiGggtt~i~i~~--~G---~i~~-~~~~~~GG~~it~~Ia~~--------~~i~-----------~~~AE~~K 162 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILK--KG---KVIY-SADEPTGGTHMSLVLAGA--------YGIS-----------FEEAEEYK 162 (239)
T ss_pred -CcEEEEeCCCcEEEEEEE--CC---eEEE-EEeeecchHHHHHHHHHH--------hCCC-----------HHHHHHHH
Confidence 259999999999999975 46 2333 346779999999876543 3343 26799999
Q ss_pred hccCCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHH
Q psy7639 2212 RTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 2291 (2568)
Q Consensus 2212 ~~LS~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~ 2291 (2568)
+.++ +++++.++++++++++.+.++++|++. .++.|+|+||++|||.+++.++
T Consensus 163 ~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 163 RGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFE 215 (239)
T ss_pred HhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHH
Confidence 8764 246678899999999999999999864 4578999999999999999999
Q ss_pred HhcCCCCCCCCCCcchhHHhhHHH
Q psy7639 2292 NFFCGKSLNLSINPDEAVAYGAAV 2315 (2568)
Q Consensus 2292 ~~f~~~~~~~~~npdeava~GAa~ 2315 (2568)
+.| +.++....||+++||+|||+
T Consensus 216 ~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 216 KQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHh-CCCcccCCCCCeehhheeec
Confidence 999 56777889999999999986
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=292.90 Aligned_cols=242 Identities=23% Similarity=0.366 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEE
Q psy7639 2058 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIF 2137 (2568)
Q Consensus 2058 i~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~ 2137 (2568)
.+..+|+++.+.+....+.....+|||||++|++.||+++.+|++.||++++.+++||+|||++||+... .+..++||
T Consensus 80 ~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~lVv 157 (335)
T PRK13930 80 ATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNMVV 157 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC--CCCceEEE
Confidence 4555666665544444455577999999999999999999999999999999999999999999998643 34568999
Q ss_pred eeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCc
Q psy7639 2138 DLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 2217 (2568)
Q Consensus 2138 DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~ 2217 (2568)
|+||||||++++... + .+ ..++..+||.|||+.|.+|+.++ ++.++. ...||++|+.|+..
T Consensus 158 DiG~gttdvs~v~~g-~-~~----~~~~~~lGG~~id~~l~~~l~~~----~~~~~~---------~~~ae~~K~~~~~~ 218 (335)
T PRK13930 158 DIGGGTTEVAVISLG-G-IV----YSESIRVAGDEMDEAIVQYVRRK----YNLLIG---------ERTAEEIKIEIGSA 218 (335)
T ss_pred EeCCCeEEEEEEEeC-C-EE----eecCcCchhHHHHHHHHHHHHHH----hCCCCC---------HHHHHHHHHHhhcC
Confidence 999999999999863 2 22 35678999999999999998765 343322 24789999999864
Q ss_pred ce----eEEEEe--cccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCC--ccCcce-EEEecCccChHHHHH
Q psy7639 2218 TE----ASIEID--ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLD--KSAIHD-VVLVGGSTRIPKVQS 2288 (2568)
Q Consensus 2218 ~~----~~~~i~--~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~--~~~i~~-vilvGGstriP~v~~ 2288 (2568)
.. ..+.+. .+..+.+....|+|++|++++.++++++.+.+.++|+.+... .+.++. |+|+||+|+||.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~ 298 (335)
T PRK13930 219 YPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDK 298 (335)
T ss_pred cCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHH
Confidence 32 123332 334556678899999999999999999999999999987643 344565 999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcchhHHhhHHHHHHHhh
Q psy7639 2289 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321 (2568)
Q Consensus 2289 ~l~~~f~~~~~~~~~npdeava~GAa~~aa~ls 2321 (2568)
.|++.|+ .++....||++|||+|||+.+....
T Consensus 299 ~l~~~~~-~~v~~~~~p~~ava~Ga~~~~~~~~ 330 (335)
T PRK13930 299 LLSEETG-LPVHIAEDPLTCVARGTGKALENLD 330 (335)
T ss_pred HHHHHHC-CCceecCCHHHHHHHHHHHHHhChH
Confidence 9999994 5666778999999999999987544
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=270.10 Aligned_cols=307 Identities=24% Similarity=0.347 Sum_probs=221.6
Q ss_pred cccccccCcccccchhhhccCCCCceeeecccccccccccCC--CceeecHHHHHhHhhCCCchHHhhhhhcCCCCCChh
Q psy7639 2 KESYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTNP--LSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPK 79 (2568)
Q Consensus 2 ~~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~~--~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 79 (2568)
+..||||||+++.+... -+.+..++.+++.++.. .-..+|++|+.+..+.|.+...
T Consensus 2 ~~igIDLGT~~t~i~~~--------~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-------------- 59 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK--------GKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-------------- 59 (326)
T ss_dssp SEEEEEE-SSEEEEEET--------TTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------
T ss_pred CceEEecCcccEEEEEC--------CCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------
Confidence 46899999999988432 25677888999988654 3446899999888877776311
Q ss_pred HHhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q psy7639 80 IQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (2568)
Q Consensus 80 v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa 159 (2568)
.+|.. + ..+.=-++...+|+++.+.+.......-..++|+||+.-|+.+|+++.+|+
T Consensus 60 ------~~Pl~--------------~---GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~ 116 (326)
T PF06723_consen 60 ------VRPLK--------------D---GVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA 116 (326)
T ss_dssp ------E-SEE--------------T---TEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH
T ss_pred ------Ecccc--------------C---CcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 12211 0 112223567778888887776532334568999999999999999999999
Q ss_pred HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHH
Q psy7639 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (2568)
Q Consensus 160 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l 239 (2568)
..||.+.+.|++||.|||+..+++ ...+...||+|+||||||++++.. |....-.+ ...||++||++|.+|+
T Consensus 117 ~~aGa~~V~li~ep~AaAiGaGl~--i~~~~g~miVDIG~GtTdiavisl--ggiv~s~s----i~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 117 RQAGARKVYLIEEPIAAAIGAGLD--IFEPRGSMIVDIGGGTTDIAVISL--GGIVASRS----IRIGGDDIDEAIIRYI 188 (326)
T ss_dssp HHTT-SEEEEEEHHHHHHHHTT----TTSSS-EEEEEE-SS-EEEEEEET--TEEEEEEE----ES-SHHHHHHHHHHHH
T ss_pred HHcCCCEEEEecchHHHHhcCCCC--CCCCCceEEEEECCCeEEEEEEEC--CCEEEEEE----EEecCcchhHHHHHHH
Confidence 999999999999999999999877 456788999999999999999975 43322222 5789999999999999
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCC----ceEEEE--eeeccCcceEEeecHHHHHHHHhhhhhhhHH
Q psy7639 240 AEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----EASIEI--DALYDGIDFYTKISRARFEELCSDLFRSTLQ 313 (2568)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----~~~i~i--~~l~~~~d~~~~itR~efe~l~~~l~~~i~~ 313 (2568)
.+++. . ... ...||++|+.++.-. ...+.+ -.+..|.+..+.|+-+++.+.+.+.+.++.+
T Consensus 189 r~~y~----l--~Ig-------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~ 255 (326)
T PF06723_consen 189 REKYN----L--LIG-------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVE 255 (326)
T ss_dssp HHHHS----E--E---------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHhhC----c--ccC-------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHH
Confidence 88774 1 111 347899999987532 223444 3456788899999999999999999999999
Q ss_pred HHHHHHHHcCCCCC-C--CCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHH
Q psy7639 314 PVEKALQDAKLDKS-A--IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 375 (2568)
Q Consensus 314 ~i~~~l~~a~~~~~-~--i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~a 375 (2568)
.|+++|+....... | -+.|+|+||+++++.+.++|++.+ +.++....||..|||.||....
T Consensus 256 ~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 256 AIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 99999998764321 3 246999999999999999999999 7899999999999999998654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=260.85 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=175.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCc
Q psy7639 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGE 1558 (2568)
Q Consensus 1479 ~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~ 1558 (2568)
.+.-.+..+++|++|++.++.++|.++.++|||||++|++.||+++++|++.|||++..+++||.|||++|+..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34457888999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhh
Q psy7639 1559 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAK 1638 (2568)
Q Consensus 1559 ~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK 1638 (2568)
..+|+|+||||+|+++++ .| .++.+. +..+||.+||+.|++.+ +++ +.+||++|
T Consensus 109 -~~~vvDiGggtt~i~i~~--~G---~i~~~~-~~~~GG~~it~~Ia~~~--------~i~-----------~~~AE~~K 162 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILK--KG---KVIYSA-DEPTGGTHMSLVLAGAY--------GIS-----------FEEAEEYK 162 (239)
T ss_pred -CcEEEEeCCCcEEEEEEE--CC---eEEEEE-eeecchHHHHHHHHHHh--------CCC-----------HHHHHHHH
Confidence 259999999999999987 56 334443 45599999999987663 222 26889999
Q ss_pred cccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHH
Q psy7639 1639 RTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718 (2568)
Q Consensus 1639 ~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~ 1718 (2568)
+.++ +.+++.++++|+++++...+++.|++.+ ++.|+|+||+|++|.++++++
T Consensus 163 ~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 163 RGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACSFSGFADVFE 215 (239)
T ss_pred HhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhcchhHHHHHH
Confidence 8753 2456788999999999999999998653 568999999999999999999
Q ss_pred hhhcCCcccccCCchhhhhccHHH
Q psy7639 1719 NFFCGKSLNLSINPDEAVAYGAAV 1742 (2568)
Q Consensus 1719 ~~f~~~~v~~~~nP~eAVA~GAai 1742 (2568)
+.| +.++..+.||+++||+|||+
T Consensus 216 ~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 216 KQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHh-CCCcccCCCCCeehhheeec
Confidence 999 56778889999999999985
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=254.08 Aligned_cols=202 Identities=25% Similarity=0.372 Sum_probs=177.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEE
Q psy7639 2056 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 2135 (2568)
Q Consensus 2056 eei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vl 2135 (2568)
-+.....|+++++.|+.++|.++..++++||++|+..||+++.+|++.|||++.++++||+|++.+|++. ..+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~ 138 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGA 138 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcE
Confidence 6778889999999999999999999999999999999999999999999999999999999999999763 158
Q ss_pred EEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccC
Q psy7639 2136 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 2215 (2568)
Q Consensus 2136 v~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS 2215 (2568)
++|+||||||++++. +| . ++.+ ++..+||++||+.|.+++ +++ +.+||++|+.++
T Consensus 139 vvDIGggtt~i~v~~--~g-~--~~~~-~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~~ 193 (267)
T PRK15080 139 VVDIGGGTTGISILK--DG-K--VVYS-ADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRDPK 193 (267)
T ss_pred EEEeCCCcEEEEEEE--CC-e--EEEE-ecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhccC
Confidence 999999999999964 56 2 2333 578999999999988765 222 367899998763
Q ss_pred CcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcC
Q psy7639 2216 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 2295 (2568)
Q Consensus 2216 ~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~ 2295 (2568)
++++++++++++++++.+.+++.|++. +++.|+|+||++|||.+++.+++.|
T Consensus 194 ----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l- 245 (267)
T PRK15080 194 ----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT- 245 (267)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-
Confidence 367899999999999999999999864 7789999999999999999999999
Q ss_pred CCCCCCCCCcchhHHhhHHHHH
Q psy7639 2296 GKSLNLSINPDEAVAYGAAVQA 2317 (2568)
Q Consensus 2296 ~~~~~~~~npdeava~GAa~~a 2317 (2568)
+.++....||+.++|+|||++|
T Consensus 246 g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCcccCCCchHHHHHHHHhhC
Confidence 6777788999999999999864
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=239.55 Aligned_cols=310 Identities=22% Similarity=0.333 Sum_probs=243.2
Q ss_pred ccccccCcccccchhhhccCCCCceeeecccccccccccC--CC--ceeecHHHHHhHhhCCCchHHhhhhhcCCCCCCh
Q psy7639 3 ESYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTN--PL--SYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDP 78 (2568)
Q Consensus 3 ~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~--~~--~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 78 (2568)
.+|||+||+|+.+... -+.+..++.||+.+.. .. -..||.+|++...+.|.|...- |+..|
T Consensus 8 diGIDLGTanTlV~~k--------~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~ai------RPmkd- 72 (342)
T COG1077 8 DIGIDLGTANTLVYVK--------GKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAI------RPMKD- 72 (342)
T ss_pred cceeeecccceEEEEc--------CceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEE------eecCC-
Confidence 5799999999988754 4678889999999965 22 3479999999888888874221 11111
Q ss_pred hHHhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEecCCCCHHHHHHHHH
Q psy7639 79 KIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKD 157 (2568)
Q Consensus 79 ~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~-~~~~~~VITVPa~f~~~qr~al~~ 157 (2568)
..+.--++...+|+|+.+.+-..-+ .....++|+||..-++.+|+|+++
T Consensus 73 ------------------------------GVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e 122 (342)
T COG1077 73 ------------------------------GVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE 122 (342)
T ss_pred ------------------------------cEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHH
Confidence 1233345777788888887764333 445579999999999999999999
Q ss_pred HHHHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHH
Q psy7639 158 AGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237 (2568)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~ 237 (2568)
|++.||.+.+.+++||.|||+..++. ...+..-||||+||||||++++.+. ... ... ...+||+.||+.+.+
T Consensus 123 a~~~aGa~~V~lieEp~aAAIGaglp--i~ep~G~mvvDIGgGTTevaVISlg--giv---~~~-Sirv~GD~~De~Ii~ 194 (342)
T COG1077 123 AAESAGAREVYLIEEPMAAAIGAGLP--IMEPTGSMVVDIGGGTTEVAVISLG--GIV---SSS-SVRVGGDKMDEAIIV 194 (342)
T ss_pred HHHhccCceEEEeccHHHHHhcCCCc--ccCCCCCEEEEeCCCceeEEEEEec--CEE---EEe-eEEEecchhhHHHHH
Confidence 99999999999999999999988766 4556678999999999999999873 221 111 257899999999999
Q ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCC--------CceEEEEeeeccCcceEEeecHHHHHHHHhhhhh
Q psy7639 238 HLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS--------TEASIEIDALYDGIDFYTKISRARFEELCSDLFR 309 (2568)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~--------~~~~i~i~~l~~~~d~~~~itR~efe~l~~~l~~ 309 (2568)
|+.+++. +....+ .+|++|+..... .+..+.-..+..|.+-.++++-+++.+.+++.+.
T Consensus 195 yvr~~~n------l~IGe~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~ 261 (342)
T COG1077 195 YVRKKYN------LLIGER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLN 261 (342)
T ss_pred HHHHHhC------eeecHH-------HHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHH
Confidence 9988775 222222 477888776442 2244555667778888999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCC--CCCCe-EEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHc
Q psy7639 310 STLQPVEKALQDAKLDK--SAIHD-VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379 (2568)
Q Consensus 310 ~i~~~i~~~l~~a~~~~--~~i~~-ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls 379 (2568)
++.+.++..|+..+... +-++. ++|+||+|-+..+.+.|++.. +.++....+|-.|||.|+......+.
T Consensus 262 ~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999976432 22555 999999999999999999987 77888889999999999998887653
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=239.06 Aligned_cols=202 Identities=24% Similarity=0.372 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEE
Q psy7639 1483 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 1562 (2568)
Q Consensus 1483 ~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vl 1562 (2568)
.+.....|+++++.++.++|.++..++++||++|+..+|+++++|++.|||++..+++||+|++.+|..+. .+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~-------~~ 138 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDN-------GA 138 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCC-------cE
Confidence 67778899999999999999999999999999999999999999999999999999999999999886421 59
Q ss_pred EEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccC
Q psy7639 1563 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 1642 (2568)
Q Consensus 1563 V~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls 1642 (2568)
|+|+||||+|+++++ +|. +..+ ++..+||.+||+.|++++. .+ +.+||+.|+.++
T Consensus 139 vvDIGggtt~i~v~~--~g~---~~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~~ 193 (267)
T PRK15080 139 VVDIGGGTTGISILK--DGK---VVYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDPK 193 (267)
T ss_pred EEEeCCCcEEEEEEE--CCe---EEEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhccC
Confidence 999999999999987 663 3333 4567999999999998742 11 357899888752
Q ss_pred CCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhc
Q psy7639 1643 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 1722 (2568)
Q Consensus 1643 ~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~ 1722 (2568)
+++++.++++|+++++.+.+++.|+.. .++.|+|+||+|++|.+++++++.|
T Consensus 194 ----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l- 245 (267)
T PRK15080 194 ----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT- 245 (267)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-
Confidence 357889999999999999999999864 4788999999999999999999999
Q ss_pred CCcccccCCchhhhhccHHHHH
Q psy7639 1723 GKSLNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1723 ~~~v~~~~nP~eAVA~GAai~a 1744 (2568)
+.++....||+.++|+|||+++
T Consensus 246 g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCcccCCCchHHHHHHHHhhC
Confidence 5678888999999999999874
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=235.09 Aligned_cols=296 Identities=25% Similarity=0.369 Sum_probs=204.3
Q ss_pred HhcccccEEEEEEcccccccccCCcccccccccchh------hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE------ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~n~~g~~~tPS~v~~~~~------~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.|||.|+.+ |..+.+..++. ||+|++++. +|++|+......|.+..
T Consensus 7 DLGT~~t~i-~~~~~Giv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i~--------------------- 58 (326)
T PF06723_consen 7 DLGTSNTRI-YVKGKGIVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE--------------------- 58 (326)
T ss_dssp EE-SSEEEE-EETTTEEEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTEE---------------------
T ss_pred ecCcccEEE-EECCCCEEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCccE---------------------
Confidence 589999877 33332223233 999999754 39999766554444321
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
++.+-.+. ...=-++...+|+++.+.+.......-..++|+||+.-++-+|+++.+|+..||..
T Consensus 59 -----~~~Pl~~G-----------vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~ 122 (326)
T PF06723_consen 59 -----VVRPLKDG-----------VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGAR 122 (326)
T ss_dssp -----EE-SEETT-----------EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-S
T ss_pred -----EEccccCC-----------cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 11110001 11114566777888877775543345678999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
.+.++.||.|||+..+.+- ......||+|+||||+|++++.+ |.++ .+.. ...||.+||+.|.+|+.+++.
T Consensus 123 ~V~li~ep~AaAiGaGl~i--~~~~g~miVDIG~GtTdiavisl--ggiv---~s~s-i~~gG~~~DeaI~~~ir~~y~- 193 (326)
T PF06723_consen 123 KVYLIEEPIAAAIGAGLDI--FEPRGSMIVDIGGGTTDIAVISL--GGIV---ASRS-IRIGGDDIDEAIIRYIREKYN- 193 (326)
T ss_dssp EEEEEEHHHHHHHHTT--T--TSSS-EEEEEE-SS-EEEEEEET--TEEE---EEEE-ES-SHHHHHHHHHHHHHHHHS-
T ss_pred EEEEecchHHHHhcCCCCC--CCCCceEEEEECCCeEEEEEEEC--CCEE---EEEE-EEecCcchhHHHHHHHHHhhC-
Confidence 9999999999999998865 34566899999999999999984 4232 2222 357999999999999877653
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCC----eeEEEEc--cccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSST----EASIEID--ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKAL 1688 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L 1688 (2568)
..+ . ...||+.|+.++... ...+.+. ...+|....+.|+.+++.+.+++.+.++.+.|+++|
T Consensus 194 ---l~I--g-------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~L 261 (326)
T PF06723_consen 194 ---LLI--G-------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVL 261 (326)
T ss_dssp ---EE-----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccc--C-------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1 247889998887532 2344443 345777788999999999999999999999999999
Q ss_pred HHcCCCCc---cc--cEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHH
Q psy7639 1689 QDAKLDKS---AI--HDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1689 ~~a~~~~~---~I--d~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a 1744 (2568)
++. +++ || +.|+|+||+++++.+.++|++.+ +-++....+|..+||.||....
T Consensus 262 e~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 262 EKT--PPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred HhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 975 332 33 46999999999999999999999 5788889999999999998653
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=196.50 Aligned_cols=247 Identities=22% Similarity=0.392 Sum_probs=196.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCeeeecchhHHHHHHhccccCCCCC
Q psy7639 684 FAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGE 762 (2568)
Q Consensus 684 ~speev~a~iL~~L~~~ae~~~~-~~~~~~VITVPa~f~~~qr~al~~Aa~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~ 762 (2568)
+.--++...+|+++.+.+....+ .....++|+||..-++-+|+|+++|++.||.+.+.++.||.|||+..++. ...+
T Consensus 75 IAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglp--i~ep 152 (342)
T COG1077 75 IADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP--IMEP 152 (342)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCc--ccCC
Confidence 33346777888888887754333 44557999999999999999999999999999999999999999987654 3344
Q ss_pred ceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHH
Q psy7639 763 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAK 842 (2568)
Q Consensus 763 ~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK 842 (2568)
..-||||+||||+|++++.+. | ...- ....+||+.||+.+++|+.++|+ +....+ .+|++|
T Consensus 153 ~G~mvvDIGgGTTevaVISlg-g-iv~~----~Sirv~GD~~De~Ii~yvr~~~n------l~IGe~-------taE~iK 213 (342)
T COG1077 153 TGSMVVDIGGGTTEVAVISLG-G-IVSS----SSVRVGGDKMDEAIIVYVRKKYN------LLIGER-------TAEKIK 213 (342)
T ss_pred CCCEEEEeCCCceeEEEEEec-C-EEEE----eeEEEecchhhHHHHHHHHHHhC------eeecHH-------HHHHHH
Confidence 567999999999999999873 2 2221 12568999999999999998876 222222 477777
Q ss_pred HhcCCC--------CcceeeeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCC--ccCcCe-EEEEcCC
Q psy7639 843 RTLSSS--------TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLD--KSAIHD-VVLVGGS 911 (2568)
Q Consensus 843 ~~LS~~--------~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~~-ViLvGGs 911 (2568)
+..... .+.++.-.++..|..-.++++-.+..+.+++.+++|.+.++..|+..... .+-++. ++|+||.
T Consensus 214 ~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGG 293 (342)
T COG1077 214 IEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGG 293 (342)
T ss_pred HHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecch
Confidence 775432 22344555677788888999999999999999999999999999986543 333666 9999999
Q ss_pred CCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHc
Q psy7639 912 TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 912 sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
+.+..+.+.|++.. +.++....+|-.|||+|+......+.
T Consensus 294 alLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 294 ALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999987 56777888999999999998877654
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=211.62 Aligned_cols=173 Identities=23% Similarity=0.337 Sum_probs=142.4
Q ss_pred HHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHH
Q psy7639 2094 RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 2173 (2568)
Q Consensus 2094 R~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~ 2173 (2568)
-+++.+|++.|||++.+++.||+|+|++|..... .+..++|+|+||||||++++. +| .... .....+||++|
T Consensus 160 v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~--~~~~~~vvDiG~gtt~i~i~~--~g-~~~~---~~~i~~GG~~i 231 (371)
T TIGR01174 160 LRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE--KELGVCLIDIGGGTTDIAVYT--GG-SIRY---TKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch--hcCCEEEEEeCCCcEEEEEEE--CC-EEEE---EeeecchHHHH
Confidence 3567789999999999999999999999965432 356799999999999999986 45 2211 24457999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCc------ceeEEEEecccCCcceEEeeCHHHHHHHhH
Q psy7639 2174 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS------TEASIEIDALYDGIDFYTKISRARFEELCS 2247 (2568)
Q Consensus 2174 D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~------~~~~~~i~~~~~~~d~~~~itr~~fe~l~~ 2247 (2568)
|+.|...+ + ..+.+||++|+.++.. .+..+.++.+. .++...+||++|+++++
T Consensus 232 t~~i~~~l--------~-----------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~ 290 (371)
T TIGR01174 232 TKDIAKAL--------R-----------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIE 290 (371)
T ss_pred HHHHHHHh--------C-----------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHH
Confidence 99876543 1 1257899999999874 35567776553 46778999999999999
Q ss_pred HHHHHhhHHHH-HHHHHcCCCccCcce-EEEecCccChHHHHHHHHHhcCC
Q psy7639 2248 DLFRSTLQPVE-KALQDAKLDKSAIHD-VVLVGGSTRIPKVQSLLQNFFCG 2296 (2568)
Q Consensus 2248 ~l~~~~~~~~~-~~l~~a~~~~~~i~~-vilvGGstriP~v~~~l~~~f~~ 2296 (2568)
++++++.+.++ +.|++++.+ ++|+. |+|+||+|+||.|++.+++.|+.
T Consensus 291 ~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 291 ARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred HHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 99999999997 999999988 78988 99999999999999999999953
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=205.89 Aligned_cols=194 Identities=22% Similarity=0.323 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeeccccccccc
Q psy7639 150 AQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 229 (2568)
Q Consensus 150 ~qr~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~ 229 (2568)
...+++.+|++.|||++..++.||.|+|++|.... ..+..++|+|+||||||+++++- |... . .....+||+
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~--~~~~~~~vvDiG~gtt~i~i~~~--g~~~-~---~~~i~~GG~ 229 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED--EKELGVCLIDIGGGTTDIAVYTG--GSIR-Y---TKVIPIGGN 229 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc--hhcCCEEEEEeCCCcEEEEEEEC--CEEE-E---EeeecchHH
Confidence 45678889999999999999999999999985432 34567999999999999999963 4221 1 233679999
Q ss_pred chHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCC------CceEEEEeeeccCcceEEeecHHHHHHH
Q psy7639 230 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS------TEASIEIDALYDGIDFYTKISRARFEEL 303 (2568)
Q Consensus 230 ~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~------~~~~i~i~~l~~~~d~~~~itR~efe~l 303 (2568)
+||+.|.+.+. ..+.+||++|+.++.. .+..+.++... .+....++|++|+++
T Consensus 230 ~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~i 288 (371)
T TIGR01174 230 HITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEI 288 (371)
T ss_pred HHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHH
Confidence 99998776431 1256899999999863 24456665443 356679999999999
Q ss_pred HhhhhhhhHHHHH-HHHHHcCCCCCCCCe-EEEcCCccchHHHHHHHHHHhCCCccccc------------CCchhHHHh
Q psy7639 304 CSDLFRSTLQPVE-KALQDAKLDKSAIHD-VVLVGGSTRIPKVQSLLQNFFCGKSLNLS------------INPDEAVAY 369 (2568)
Q Consensus 304 ~~~l~~~i~~~i~-~~l~~a~~~~~~i~~-ViLvGG~sriP~v~~~l~~~f~~~~v~~~------------~npdeaVA~ 369 (2568)
+++.++++...++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+ .++... -+|..++|.
T Consensus 289 i~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~ 366 (371)
T TIGR01174 289 IEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAV 366 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHH
Confidence 9999999999997 999999876 56777 9999999999999999999994 333221 268888888
Q ss_pred hHHHH
Q psy7639 370 GAAVQ 374 (2568)
Q Consensus 370 GAa~~ 374 (2568)
|.++|
T Consensus 367 Gl~~~ 371 (371)
T TIGR01174 367 GLLLY 371 (371)
T ss_pred HHHhC
Confidence 88763
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=201.23 Aligned_cols=196 Identities=19% Similarity=0.273 Sum_probs=147.2
Q ss_pred HHHHHHHHHHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccch
Q psy7639 152 RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 231 (2568)
Q Consensus 152 r~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~ 231 (2568)
.+.+..|++.|||++..++.||.|+|.++.... ..+..++|+|+||||||+++++ .|... .......||++|
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~--e~~~gv~vvDiGggtTdisv~~--~G~l~----~~~~i~~GG~~i 239 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED--ERELGVCVVDIGGGTMDIAVYT--GGALR----HTKVIPYAGNVV 239 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh--hhhcCeEEEEeCCCceEEEEEE--CCEEE----EEeeeechHHHH
Confidence 344567999999999999999999999986542 3467799999999999999996 35221 122256899999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCC------CceEEEEeeeccCcceEEeecHHHHHHHHh
Q psy7639 232 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS------TEASIEIDALYDGIDFYTKISRARFEELCS 305 (2568)
Q Consensus 232 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~------~~~~i~i~~l~~~~d~~~~itR~efe~l~~ 305 (2568)
++.|...+. . -...||++|+.+... .+..+.++...+.. ...++|.+|.+++.
T Consensus 240 t~dIa~~l~--------i-----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~ 298 (420)
T PRK09472 240 TSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIE 298 (420)
T ss_pred HHHHHHHhC--------c-----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHH
Confidence 988875541 1 135799999765431 23456665443322 24889999999999
Q ss_pred hhhhhhHHHHH-------HHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccc------------cCCchhH
Q psy7639 306 DLFRSTLQPVE-------KALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL------------SINPDEA 366 (2568)
Q Consensus 306 ~l~~~i~~~i~-------~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~------------~~npdea 366 (2568)
+.++++++.++ ..|..+++....++.|+|+||+|++|.+++.+++.|+ .++.. ..+|..|
T Consensus 299 ~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 299 PRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHH
Confidence 96666666554 5567778777789999999999999999999999994 44332 1489999
Q ss_pred HHhhHHHHHHH
Q psy7639 367 VAYGAAVQAAI 377 (2568)
Q Consensus 367 VA~GAa~~aa~ 377 (2568)
+|.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=198.07 Aligned_cols=197 Identities=21% Similarity=0.303 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCCh
Q psy7639 1518 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597 (2568)
Q Consensus 1518 ~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG 1597 (2568)
+.+++. .+|++.|||++..++.||.|+|.++..+. ..+..++|+|+||||+|++++. +|. +..+.. -..||
T Consensus 166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~--e~~~gv~vvDiGggtTdisv~~--~G~---l~~~~~-i~~GG 236 (420)
T PRK09472 166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTED--ERELGVCVVDIGGGTMDIAVYT--GGA---LRHTKV-IPYAG 236 (420)
T ss_pred HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcChh--hhhcCeEEEEeCCCceEEEEEE--CCE---EEEEee-eechH
Confidence 445555 56999999999999999999999986543 3456799999999999999998 662 223333 34799
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccC----CC--CeeEEEEccccCCcceeeecCHHHHHH
Q psy7639 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS----SS--TEASIEIDALYDGIDFYTKISRARFEE 1671 (2568)
Q Consensus 1598 ~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls----~~--~~~~i~i~~~~~~~~~~~~itr~~fe~ 1671 (2568)
.+|++.|+..|. . -+..||++|+... .. .+..+.++...+... ..+++.+|.+
T Consensus 237 ~~it~dIa~~l~--------i-----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~~--~~i~~~~l~~ 295 (420)
T PRK09472 237 NVVTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPP--RSLQRQTLAE 295 (420)
T ss_pred HHHHHHHHHHhC--------c-----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCCC--eEEcHHHHHH
Confidence 999999986641 1 1368999996543 21 235566664433322 3789999999
Q ss_pred HHhHHHHHHHHHHH-------HHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccc------------cCCc
Q psy7639 1672 LCSDLFRSTLQPVE-------KALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL------------SINP 1732 (2568)
Q Consensus 1672 l~~pli~~i~~~i~-------~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~------------~~nP 1732 (2568)
++.|.++.+++.+. ..|.++++....++.|+|+||+|++|.+++++++.|+ .+++. ..+|
T Consensus 296 ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P 374 (420)
T PRK09472 296 VIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEP 374 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCc
Confidence 99996666655554 5667778888889999999999999999999999995 33332 2489
Q ss_pred hhhhhccHHHHHH
Q psy7639 1733 DEAVAYGAAVQAA 1745 (2568)
Q Consensus 1733 ~eAVA~GAai~a~ 1745 (2568)
..|+|.|.++|+.
T Consensus 375 ~~ata~Gl~~~~~ 387 (420)
T PRK09472 375 YYSTAVGLLHYGK 387 (420)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999975
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-12 Score=158.17 Aligned_cols=323 Identities=24% Similarity=0.328 Sum_probs=216.0
Q ss_pred ccccccCcccccchhhhccCCCCceeeeccc-ccccccccCCCceeecHHHHHhHhhCCCchHHhhhhhcCCCCCChhHH
Q psy7639 3 ESYIAEGPCAISPAQRRVMRDPGRVVERAAL-ELRVKSLTNPLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQ 81 (2568)
Q Consensus 3 ~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~-~~~v~~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~ 81 (2568)
..|+|.||+.+++...... +.| +.++.+. ...-+.+. ...++==+|..++.+ .++....+..|...++-.+.
T Consensus 8 iv~LDIGTskV~~lVge~~-~~g-~i~iig~g~~~SrGik--~G~I~di~~~~~sI~---~av~~AE~mag~~i~~v~vs 80 (418)
T COG0849 8 IVGLDIGTSKVKALVGELR-PDG-RLNIIGVGSHPSRGIK--KGVIVDLDAAAQSIK---KAVEAAERMAGCEIKSVIVS 80 (418)
T ss_pred EEEEEccCcEEEEEEEEEc-CCC-eEEEEeeecccCcccc--cceEEcHHHHHHHHH---HHHHHHHHhcCCCcceEEEE
Confidence 5789999999988765543 444 3555443 11112221 123343344444432 56777777788775432110
Q ss_pred hhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeE----------------------
Q psy7639 82 QDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDA---------------------- 139 (2568)
Q Consensus 82 ~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~---------------------- 139 (2568)
.+-..+ ........+.+.++ +.++.+++- ++.+.|......+-.++
T Consensus 81 -----~sG~~i-~s~~~~g~v~i~~~-~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~gm 148 (418)
T COG0849 81 -----LSGNHI-KSQNVNGEVSISEE-KEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPLGM 148 (418)
T ss_pred -----ecccee-EEEeeEEEEEcCCC-CccCHHHHH-----HHHHHHHhhccCCCceEEEEeeeEEEECCccccCCcccc
Confidence 000000 00111223444443 667777765 33344433222222333
Q ss_pred ----------EEEecCCCCHHHHHHHHHHHHHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeee
Q psy7639 140 ----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSI 209 (2568)
Q Consensus 140 ----------VITVPa~f~~~qr~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~ 209 (2568)
++|+|..+ -+.+.+|.+.|||++..++-+|.|+|.+...+ ..++-.++++|+||||||+++++-
T Consensus 149 ~G~rL~v~vhvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~--dEkelGv~lIDiG~GTTdIai~~~ 222 (418)
T COG0849 149 SGVRLEVEVHVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTE--DEKELGVALIDIGGGTTDIAIYKN 222 (418)
T ss_pred ccceEEEEEEEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCc--ccHhcCeEEEEeCCCcEEEEEEEC
Confidence 45555433 56788999999999999999999999887654 245678999999999999999963
Q ss_pred cCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCC------CceEEEEe
Q psy7639 210 DEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS------TEASIEID 283 (2568)
Q Consensus 210 ~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~------~~~~i~i~ 283 (2568)
|. +.. .+-..+||++++..|..-|.-.+ ..||+.|+..... .+..+.++
T Consensus 223 --G~---l~~-~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~ 277 (418)
T COG0849 223 --GA---LRY-TGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVP 277 (418)
T ss_pred --CE---EEE-EeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecc
Confidence 42 222 23367999999999887754333 3789999887653 23446666
Q ss_pred eeccCcceEEeecHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccc----
Q psy7639 284 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL---- 359 (2568)
Q Consensus 284 ~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~---- 359 (2568)
...+.. ...+||.++.+++++-+.+++.++++.|++.+....-...|+|+||++.+|.+.+..++.|+ .+++.
T Consensus 278 ~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~ 354 (418)
T COG0849 278 SVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPL 354 (418)
T ss_pred cCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCc
Confidence 544433 67899999999999999999999999999999887778999999999999999999999994 32211
Q ss_pred --------cCCchhHHHhhHHHHHHHH
Q psy7639 360 --------SINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 360 --------~~npdeaVA~GAa~~aa~l 378 (2568)
..+|..++|.|..+++...
T Consensus 355 ~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 355 NIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cccCchhhccCchhhhhHHHHHHHhhc
Confidence 2368999999999988754
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=161.27 Aligned_cols=210 Identities=29% Similarity=0.416 Sum_probs=166.3
Q ss_pred ccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcE
Q psy7639 1504 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGAL 1583 (2568)
Q Consensus 1504 ~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~ 1583 (2568)
.+.--++|+|..+- +-+.+|.+.|||++..++.+|-|+|.+...+. ..+..++++|+||||+|+++++ +|
T Consensus 154 ~v~vhvit~~~~~~----~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d--EkelGv~lIDiG~GTTdIai~~--~G-- 223 (418)
T COG0849 154 EVEVHVITGPKNIL----ENLEKCVERAGLKVDNIVLEPLASALAVLTED--EKELGVALIDIGGGTTDIAIYK--NG-- 223 (418)
T ss_pred EEEEEEEEcchHHH----HHHHHHHHHhCCCeeeEEEehhhhhhhccCcc--cHhcCeEEEEeCCCcEEEEEEE--CC--
Confidence 36667899998874 56888999999999999999999999886644 4567799999999999999998 77
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCC------CCeeEEEEccccCC
Q psy7639 1584 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------STEASIEIDALYDG 1657 (2568)
Q Consensus 1584 ~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~------~~~~~i~i~~~~~~ 1657 (2568)
.+..+.- -..||.+++..|+.-|.- + ++.||+.|..... .....+.++...+.
T Consensus 224 -~l~~~~~-ipvgG~~vT~DIa~~l~t--------~-----------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~ 282 (418)
T COG0849 224 -ALRYTGV-IPVGGDHVTKDIAKGLKT--------P-----------FEEAERIKIKYGSALISLADDEETIEVPSVGSD 282 (418)
T ss_pred -EEEEEee-EeeCccHHHHHHHHHhCC--------C-----------HHHHHHHHHHcCccccCcCCCcceEecccCCCc
Confidence 4444444 448999999999887532 1 3467777766542 23344666554443
Q ss_pred cceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccc---------
Q psy7639 1658 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL--------- 1728 (2568)
Q Consensus 1658 ~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~--------- 1728 (2568)
. ...+|+..+.+++++.+..++..++..|++.+....-...|+|+||++.+|.+.+..++.|+ ..++.
T Consensus 283 ~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl 359 (418)
T COG0849 283 I--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGL 359 (418)
T ss_pred c--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCc
Confidence 3 45799999999999999999999999999999877677889999999999999999999994 33322
Q ss_pred ---cCCchhhhhccHHHHHHHH
Q psy7639 1729 ---SINPDEAVAYGAAVQAAIL 1747 (2568)
Q Consensus 1729 ---~~nP~eAVA~GAai~a~~l 1747 (2568)
..+|..+.|.|...|+...
T Consensus 360 ~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 360 TDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred hhhccCchhhhhHHHHHHHhhc
Confidence 2357889999998888643
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-13 Score=145.43 Aligned_cols=195 Identities=26% Similarity=0.394 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeC
Q psy7639 1488 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLG 1567 (2568)
Q Consensus 1488 ~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~G 1567 (2568)
.+.+++|+.+|..+|...+.+.-++|..-.....+..-+..+.||++++..++||||||--.+++. -.|+|+|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d-------g~VVDiG 148 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD-------GGVVDIG 148 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC-------CcEEEeC
Confidence 578999999999999999999999999987777778888899999999999999999998765543 3899999
Q ss_pred CcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCee
Q psy7639 1568 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEA 1647 (2568)
Q Consensus 1568 GGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~ 1647 (2568)
|||+-+||++ +| +|..+.... .||..++-.|+-+ ++++ ++++|.-|+.--.
T Consensus 149 GGTTGIsi~k--kG---kViy~ADEp-TGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~---- 199 (277)
T COG4820 149 GGTTGISIVK--KG---KVIYSADEP-TGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKK---- 199 (277)
T ss_pred CCcceeEEEE--cC---cEEEeccCC-CCceeEEEEEecc--------cCcC-----------HhHHHHhhhcccc----
Confidence 9999999999 77 566666544 7888887766654 3343 3466766654211
Q ss_pred EEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCccc
Q psy7639 1648 SIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 1727 (2568)
Q Consensus 1648 ~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~ 1727 (2568)
.++.-..++|+++++.+++.+-++..+ |..++||||+|..|.+.+..++.| +-.+.
T Consensus 200 ------------------~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~ 255 (277)
T COG4820 200 ------------------GEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVH 255 (277)
T ss_pred ------------------chhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccc
Confidence 112223578999999999999998876 445999999999999999999999 67777
Q ss_pred ccCCchhhhhccHHH
Q psy7639 1728 LSINPDEAVAYGAAV 1742 (2568)
Q Consensus 1728 ~~~nP~eAVA~GAai 1742 (2568)
.+..|....-+|-|+
T Consensus 256 ~P~~p~y~TPLgIA~ 270 (277)
T COG4820 256 LPQHPLYMTPLGIAS 270 (277)
T ss_pred cCCCcceechhhhhh
Confidence 777777666666653
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=150.37 Aligned_cols=238 Identities=18% Similarity=0.179 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHH-HHHcCCcEEEEecchhHHHHhhccccccCCCceEEE
Q psy7639 116 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLI 194 (2568)
Q Consensus 116 l~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV 194 (2568)
....+|+++....-. ....-..++|++|..++..+|+.+.+. .+..|+..+.++++|.+|+++++. .+-+|
T Consensus 76 ~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lV 147 (371)
T cd00012 76 DMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGLV 147 (371)
T ss_pred HHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEEE
Confidence 444566665543211 112245799999999998888888775 567899999999999999998864 47899
Q ss_pred EEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCC
Q psy7639 195 FDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 274 (2568)
Q Consensus 195 ~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~ 274 (2568)
+|+|+++|+++.+. +|.. +........+||.++|+.|.+++..+.. ..+.. .-...++..|+.+..
T Consensus 148 VDiG~~~t~i~pv~--~G~~--~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~ 213 (371)
T cd00012 148 VDSGDGVTHVVPVY--DGYV--LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCY 213 (371)
T ss_pred EECCCCeeEEEEEE--CCEE--chhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhhee
Confidence 99999999998874 3522 2222234679999999999998755321 00111 112345566655432
Q ss_pred CCc--------------eEEEEeeeccCcceEEeecHHHH---HHHHhh-----hhhhhHHHHHHHHHHcCCCC--CCCC
Q psy7639 275 STE--------------ASIEIDALYDGIDFYTKISRARF---EELCSD-----LFRSTLQPVEKALQDAKLDK--SAIH 330 (2568)
Q Consensus 275 ~~~--------------~~i~i~~l~~~~d~~~~itR~ef---e~l~~~-----l~~~i~~~i~~~l~~a~~~~--~~i~ 330 (2568)
-.. .....-.+.++. .+.++.+.| |.++.| ....+.+.|.+++..+..+. .-.+
T Consensus 214 v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~ 291 (371)
T cd00012 214 VALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYS 291 (371)
T ss_pred ecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHh
Confidence 100 000001122332 345565544 334444 23477888999998775432 2378
Q ss_pred eEEEcCCccchHHHHHHHHHHhCCC---------cccccCCchhHHHhhHHHHHHH
Q psy7639 331 DVVLVGGSTRIPKVQSLLQNFFCGK---------SLNLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 331 ~ViLvGG~sriP~v~~~l~~~f~~~---------~v~~~~npdeaVA~GAa~~aa~ 377 (2568)
.|+|+||+|++|.+.++|++.+... .+....+|..++-.||+++|..
T Consensus 292 ~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 292 NIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred CEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 8999999999999999999888421 2234568899999999998864
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=135.37 Aligned_cols=210 Identities=18% Similarity=0.234 Sum_probs=137.9
Q ss_pred CCCeEE--EEecCCCCHHHH-HHHHHHHHHc------C------CcEEEEecchhHHHHhhccccc------cCCCceEE
Q psy7639 135 SVRDAV--ITVPAYFNDAQR-QATKDAGAIA------G------LNVMRIVNEPTAAALAYGLDKN------LKGERNVL 193 (2568)
Q Consensus 135 ~~~~~V--ITVPa~f~~~qr-~al~~Aa~~A------G------l~~~~li~Ep~AAAl~y~~~~~------~~~~~~vl 193 (2568)
.+.+++ ...|..+-..++ +.+++..... | ++.+.+++||.+|.+++..+.. ......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 345444 588998854443 6666554221 1 2346789999999887765422 12345789
Q ss_pred EEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcC
Q psy7639 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 273 (2568)
Q Consensus 194 V~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS 273 (2568)
|+|+|+||||+++++ .+ .+ +....+....|..++.+.|.+++..+. ++. ..+...+. +. |.
T Consensus 189 vIDIG~~TtD~~v~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~--~~~~~~ie---~~-------l~ 249 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NL-KR-VEEESFVIPKGTIDVYKRIASHISKKE---EGA--SITPYMLE---KG-------LE 249 (344)
T ss_pred EEEcCCCcEEEEEEe--Cc-EE-cccccccccchHHHHHHHHHHHHHhhC---CCC--CCCHHHHH---HH-------HH
Confidence 999999999999986 23 21 233334466899899888887774332 222 22222221 11 22
Q ss_pred CCCceEEEEeeeccCcceEEeecHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhC
Q psy7639 274 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 353 (2568)
Q Consensus 274 ~~~~~~i~i~~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~ 353 (2568)
.. .+.+ ..+.. +.+ ++++.++++++++++...++..+.+ ..+++.|+|+||++++ +++.|++.|+
T Consensus 250 ~g---~i~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~ 314 (344)
T PRK13917 250 YG---ACKL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYS 314 (344)
T ss_pred cC---cEEe---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcC
Confidence 11 1211 11111 222 4667889999999999888888854 3478999999999988 8899999996
Q ss_pred CCcccccCCchhHHHhhHHHHHHHHcC
Q psy7639 354 GKSLNLSINPDEAVAYGAAVQAAILSG 380 (2568)
Q Consensus 354 ~~~v~~~~npdeaVA~GAa~~aa~ls~ 380 (2568)
.. ....||..|.|+|...+|..+.+
T Consensus 315 ~~--~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 315 DV--EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred Ce--EEcCChHHHHHHHHHHHHHHHhc
Confidence 43 55689999999999999987654
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.5e-11 Score=127.60 Aligned_cols=195 Identities=27% Similarity=0.402 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCeeeecchhHHHHHHhccccCCCCCceEEEEEeC
Q psy7639 692 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLG 771 (2568)
Q Consensus 692 ~iL~~L~~~ae~~~~~~~~~~VITVPa~f~~~qr~al~~Aa~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~G 771 (2568)
.+.+++++.+|.++|..+.++.-++|..--....+...+..+.||++++..++||+|||.-.+++ .-.|+|+|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-------dg~VVDiG 148 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-------DGGVVDIG 148 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC-------CCcEEEeC
Confidence 56789999999999999999999999988777777888889999999999999999999766654 24799999
Q ss_pred CceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q psy7639 772 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEA 851 (2568)
Q Consensus 772 gGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~ 851 (2568)
|||+-+||++ +| +|..+ -|...||..+...|.-+ ++.+ ..+||.-|+.-....+
T Consensus 149 GGTTGIsi~k--kG---kViy~-ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~~~E- 202 (277)
T COG4820 149 GGTTGISIVK--KG---KVIYS-ADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKKGEE- 202 (277)
T ss_pred CCcceeEEEE--cC---cEEEe-ccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccccchh-
Confidence 9999999997 45 23332 34667887766544332 2221 2255666653321111
Q ss_pred eeeeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCcccc
Q psy7639 852 SIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN 931 (2568)
Q Consensus 852 ~i~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~ 931 (2568)
.--.+.|+++++.+.+.+.++..+ +..+.|+||+|.-|.+.+..++.| ...+.
T Consensus 203 ---------------------if~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~ 255 (277)
T COG4820 203 ---------------------IFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVH 255 (277)
T ss_pred ---------------------cccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccc
Confidence 112367899999999999888765 667999999999999999999999 67777
Q ss_pred ccCCchhHHHhhHHH
Q psy7639 932 LSINPDEAVAYGAAV 946 (2568)
Q Consensus 932 ~~~npdeaVA~GAAl 946 (2568)
.+..|...--.|-|+
T Consensus 256 ~P~~p~y~TPLgIA~ 270 (277)
T COG4820 256 LPQHPLYMTPLGIAS 270 (277)
T ss_pred cCCCcceechhhhhh
Confidence 776666555555443
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.9e-10 Score=142.88 Aligned_cols=236 Identities=19% Similarity=0.210 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CCCeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCce
Q psy7639 115 EISSMVLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 191 (2568)
Q Consensus 115 el~a~~L~~l~~~ae~~l~~--~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~ 191 (2568)
+....+|+++... .++. .-..++||.|...+..+|+.+.+.+ +..|+..+.++++|.+|+++++ ..+
T Consensus 75 ~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~ 144 (373)
T smart00268 75 DDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTT 144 (373)
T ss_pred HHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCE
Confidence 4556666666653 2332 2356899999999999999998887 5679999999999999999886 347
Q ss_pred EEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHh
Q psy7639 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT 271 (2568)
Q Consensus 192 vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~ 271 (2568)
-+|+|+|+++++++.+. +|.. +........+||.++|+.|.++|...-. ++ +.. .-...++.+|+.
T Consensus 145 ~lVVDiG~~~t~v~pv~--~G~~--~~~~~~~~~~GG~~l~~~l~~~l~~~~~-~~------~~~---~~~~~~~~iKe~ 210 (373)
T smart00268 145 GLVIDSGDGVTHVVPVV--DGYV--LPHAIKRIDIAGRDLTDYLKELLSERGY-QF------NSS---AEFEIVREIKEK 210 (373)
T ss_pred EEEEecCCCcceEEEEE--CCEE--chhhheeccCcHHHHHHHHHHHHHhcCC-CC------CcH---HHHHHHHHhhhh
Confidence 89999999999999885 4522 2222223579999999999988765110 00 000 112234445544
Q ss_pred cCCC-----------------CceEEEEeeeccCcceEEeecHHHH---HHHHhhh-----hhhhHHHHHHHHHHcCCCC
Q psy7639 272 LSSS-----------------TEASIEIDALYDGIDFYTKISRARF---EELCSDL-----FRSTLQPVEKALQDAKLDK 326 (2568)
Q Consensus 272 LS~~-----------------~~~~i~i~~l~~~~d~~~~itR~ef---e~l~~~l-----~~~i~~~i~~~l~~a~~~~ 326 (2568)
+..- ....... .+.++..+ .+..+.| |.++.|. ...+.+.|.++|..+....
T Consensus 211 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~lpdg~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~ 287 (373)
T smart00268 211 LCYVAEDFEKEMKKARESSESSKLEKTY-ELPDGNTI--KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDV 287 (373)
T ss_pred eeeecCChHHHHHHhhhcccccccceeE-ECCCCCEE--EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhH
Confidence 3211 0000111 12344333 3333333 3344442 3477888888888775432
Q ss_pred C--CCCeEEEcCCccchHHHHHHHHHHhCCC-------cccccCCchhHHHhhHHHHHHH
Q psy7639 327 S--AIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 327 ~--~i~~ViLvGG~sriP~v~~~l~~~f~~~-------~v~~~~npdeaVA~GAa~~aa~ 377 (2568)
. -.+.|+|+||+|++|.+.++|++.+... .+..+.++..++=.||+++|..
T Consensus 288 r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 288 RKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 1 2678999999999999999999887211 2222345566777788777653
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=136.60 Aligned_cols=239 Identities=18% Similarity=0.189 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHHH-HHHcCCCeeeecchhHHHHHHhccccCCCCCceEE
Q psy7639 688 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 766 (2568)
Q Consensus 688 ev~a~iL~~L~~~ae~~~~~~~~~~VITVPa~f~~~qr~al~~A-a~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vl 766 (2568)
+....+++++....-. ....-..+++++|..++..+|+.+.+. .+..|+..+.++++|.+|+++++. .+.+
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~l 146 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGL 146 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEE
Confidence 4445666665543211 112346799999999998888888765 677999999999999999999864 5789
Q ss_pred EEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy7639 767 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 846 (2568)
Q Consensus 767 V~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS 846 (2568)
|+|+|+++++++.+. +|. -+........+||.++|+.|.+++..... ..+.. .-...++..|+.+.
T Consensus 147 VVDiG~~~t~i~pv~--~G~--~~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~ 212 (371)
T cd00012 147 VVDSGDGVTHVVPVY--DGY--VLPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLC 212 (371)
T ss_pred EEECCCCeeEEEEEE--CCE--EchhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhhe
Confidence 999999999998875 452 22233344679999999999988764321 00111 11234566666543
Q ss_pred CCCc---ce-----------eeeccccCCcceEEecchHhH---HHHHHH-----HHHhHHHHHHHHHHHccCC--ccCc
Q psy7639 847 SSTE---AS-----------IEIDALYDGIDFYTKISRARF---EELCSD-----LFRSTLQPVEKALQDAKLD--KSAI 902 (2568)
Q Consensus 847 ~~~~---~~-----------i~i~~l~~~~d~~~~itr~ef---e~l~~~-----l~~~i~~~i~~~L~~a~~~--~~~I 902 (2568)
.-.. .. ...-.+.++. .+.++.+.| |.++.| ....+.+.|.++|.....+ ..-+
T Consensus 213 ~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~ 290 (371)
T cd00012 213 YVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLY 290 (371)
T ss_pred eecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHH
Confidence 2110 00 0001122232 344554433 223333 1236778888888876433 2337
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCc---------cccccCCchhHHHhhHHHHHHH
Q psy7639 903 HDVVLVGGSTRIPKVQSLLQNFFCGK---------SLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 903 ~~ViLvGGssriP~v~~~l~~~f~~~---------~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
+.|+|+||+|++|.+.++|++.+... .+....+|..++-+||+++|..
T Consensus 291 ~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 291 SNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred hCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88999999999999999999887421 2334568899999999999865
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=124.86 Aligned_cols=211 Identities=18% Similarity=0.242 Sum_probs=139.9
Q ss_pred ccceEE--EEecCCCCHHHH-HHHHHHHHHc------C------CceEEEEechhHHHHHhhcccc------ccCcceEE
Q psy7639 1504 SVRDAV--ITVPAYFNDAQR-QATKDAGAIA------G------LNVMRIVNEPTAAALAYGLDKN------LKGERNVL 1562 (2568)
Q Consensus 1504 ~~~~~V--iTVPa~f~~~qR-~~~~~Aa~~A------G------L~v~~li~EPtAAal~y~~~~~------~~~~~~vl 1562 (2568)
.+..++ ...|..+...++ +.+++..... | +..+.++.||.+|.+.+..+.. ......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 345444 588988854553 6666654321 1 1346688999988887766432 12345789
Q ss_pred EEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccC
Q psy7639 1563 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 1642 (2568)
Q Consensus 1563 V~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls 1642 (2568)
|+|+|+||+|+++++ ++ .+ +...++....|..++.+.|++++..+ .++.. .++..+. +..+.-+..+.
T Consensus 189 vIDIG~~TtD~~v~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~--~~~~~ie---~~l~~g~i~~~ 256 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NL-KR-VEEESFVIPKGTIDVYKRIASHISKK---EEGAS--ITPYMLE---KGLEYGACKLN 256 (344)
T ss_pred EEEcCCCcEEEEEEe--Cc-EE-cccccccccchHHHHHHHHHHHHHhh---CCCCC--CCHHHHH---HHHHcCcEEeC
Confidence 999999999999997 44 22 23333445589999999998887432 22222 2232222 22221111111
Q ss_pred CCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhc
Q psy7639 1643 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 1722 (2568)
Q Consensus 1643 ~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~ 1722 (2568)
.+.. +.+ ++++.++++++++++...+...+.+ ..++|.|+|+||++++ +++.|++.|+
T Consensus 257 -------------~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~ 314 (344)
T PRK13917 257 -------------QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYS 314 (344)
T ss_pred -------------CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcC
Confidence 1111 122 4667789999999999999888864 3478999999999987 8999999995
Q ss_pred CCcccccCCchhhhhccHHHHHHHHhCC
Q psy7639 1723 GKSLNLSINPDEAVAYGAAVQAAILSGD 1750 (2568)
Q Consensus 1723 ~~~v~~~~nP~eAVA~GAai~a~~l~~~ 1750 (2568)
. +....||..|.|.|...+|..+.+.
T Consensus 315 ~--~~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 315 D--VEKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred C--eEEcCChHHHHHHHHHHHHHHHhcc
Confidence 3 4567899999999999999877653
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=132.35 Aligned_cols=239 Identities=18% Similarity=0.183 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCc
Q psy7639 687 EEISSMVLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGER 763 (2568)
Q Consensus 687 eev~a~iL~~L~~~ae~~~~~--~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~ 763 (2568)
-+....+++++... .++. .-..++||.|...+..+|+.+.+.+ +..|++.+.++++|.+|+++++ ..
T Consensus 74 ~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~ 143 (373)
T smart00268 74 WDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RT 143 (373)
T ss_pred HHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CC
Confidence 45566777777654 2332 2357899999999999999998887 5779999999999999999886 35
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q psy7639 764 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR 843 (2568)
Q Consensus 764 ~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~ 843 (2568)
+.+|+|+|+++++++.+. +|. -+........+||.++|+.|.+++...- .. . +.. .-...++.+|+
T Consensus 144 ~~lVVDiG~~~t~v~pv~--~G~--~~~~~~~~~~~GG~~l~~~l~~~l~~~~---~~--~--~~~---~~~~~~~~iKe 209 (373)
T smart00268 144 TGLVIDSGDGVTHVVPVV--DGY--VLPHAIKRIDIAGRDLTDYLKELLSERG---YQ--F--NSS---AEFEIVREIKE 209 (373)
T ss_pred EEEEEecCCCcceEEEEE--CCE--EchhhheeccCcHHHHHHHHHHHHHhcC---CC--C--CcH---HHHHHHHHhhh
Confidence 789999999999999886 452 2223333457999999999988876510 00 0 000 11223445555
Q ss_pred hcCCCC-----------------cceeeeccccCCcceEEecchHhH-HHHHHHH-----HHhHHHHHHHHHHHccCCc-
Q psy7639 844 TLSSST-----------------EASIEIDALYDGIDFYTKISRARF-EELCSDL-----FRSTLQPVEKALQDAKLDK- 899 (2568)
Q Consensus 844 ~LS~~~-----------------~~~i~i~~l~~~~d~~~~itr~ef-e~l~~~l-----~~~i~~~i~~~L~~a~~~~- 899 (2568)
.+..-. ...... .+.++..+.+...|-.. |.++.|- ...+.+.|.++|..+..+.
T Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r 288 (373)
T smart00268 210 KLCYVAEDFEKEMKKARESSESSKLEKTY-ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVR 288 (373)
T ss_pred heeeecCChHHHHHHhhhcccccccceeE-ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHH
Confidence 432210 000000 12234333332222221 2233331 2356777788887654321
Q ss_pred -cCcCeEEEEcCCCCcHHHHHHHHHHhCCc-------cccccCCchhHHHhhHHHHHHH
Q psy7639 900 -SAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 900 -~~I~~ViLvGGssriP~v~~~l~~~f~~~-------~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
.-.+.|+|+||+|++|.+.++|.+.+... .+..+.++..++=.||+++|..
T Consensus 289 ~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 289 KDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 22567999999999999999998877221 2333445667777788887754
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=117.43 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=126.3
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHc---------CCcEEEEecchhHHHHhhccccc--cCCCceEEEEEeCCcceE
Q psy7639 135 SVRDAVITVPAYFNDAQRQATKDAGAIA---------GLNVMRIVNEPTAAALAYGLDKN--LKGERNVLIFDLGGGTFD 203 (2568)
Q Consensus 135 ~~~~~VITVPa~f~~~qr~al~~Aa~~A---------Gl~~~~li~Ep~AAAl~y~~~~~--~~~~~~vlV~D~GggT~D 203 (2568)
.+..+|+..|..+...+|+.+++..... -++.+.+++||.+|.+.+..+.. ......++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4567999999999999999998876532 23557889999999888765321 235667999999999999
Q ss_pred EEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q psy7639 204 VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 283 (2568)
Q Consensus 204 vsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~ 283 (2568)
+.+++ .+ .+ +....+....|-.++-+.+.+.+.++ ++.+...+...+.. + |..... +.+
T Consensus 181 ~~~~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~----~g~~~~~~~~~i~~---~-------l~~g~~--~~~- 239 (320)
T TIGR03739 181 WLVAR--GM-RL-VQKRSGSVNGGMSDIYRLLAAEISKD----IGTPAYRDIDRIDL---A-------LRTGKQ--PRI- 239 (320)
T ss_pred eehcc--CC-EE-cccccCCchhHHHHHHHHHHHHHHhh----cCCCCccCHHHHHH---H-------HHhCCc--eee-
Confidence 98774 23 22 33444445677666666665555444 44431112222221 1 111110 001
Q ss_pred eeccCcceEEeecHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCc
Q psy7639 284 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 363 (2568)
Q Consensus 284 ~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~np 363 (2568)
.+.. +.|+ +.++ .....+++++..+.+.+. ...+++.|+|+||++. .+++.|++.|+...+....||
T Consensus 240 ---~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 ---YQKP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred ---ccee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 1111 1122 1122 223333444433333331 2346899999999998 567889999976555566899
Q ss_pred hhHHHhhHHHHH
Q psy7639 364 DEAVAYGAAVQA 375 (2568)
Q Consensus 364 deaVA~GAa~~a 375 (2568)
..|.|+|-..+|
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=110.26 Aligned_cols=223 Identities=17% Similarity=0.199 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHc---------CCceEEEEechhHHHHHhhcccc
Q psy7639 1484 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA---------GLNVMRIVNEPTAAALAYGLDKN 1554 (2568)
Q Consensus 1484 ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~A---------GL~v~~li~EPtAAal~y~~~~~ 1554 (2568)
+-.++++..|.... . ..+..+|+..|..+...||+.+++...-. -+..+.++.||.+|.+.|..+..
T Consensus 85 ~~~~L~~~Al~~~~---~-~~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~ 160 (320)
T TIGR03739 85 EYMALLRGALALSK---V-REIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHG 160 (320)
T ss_pred HHHHHHHHHHHHhc---C-CCCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCC
Confidence 44455555543321 1 23567999999999999999999876531 23557789999998887765321
Q ss_pred --ccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q psy7639 1555 --LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRT 1632 (2568)
Q Consensus 1555 --~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 1632 (2568)
.....+++|+|+||+|+|+.+++ ++ .. +...++....|-.++-+.|.+.+.++ ++.....+...+..
T Consensus 161 ~~~~~~~~~lVIDIG~~TtD~~~~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~----~g~~~~~~~~~i~~--- 229 (320)
T TIGR03739 161 KLLTGKEQSLIIDPGYFTFDWLVAR--GM-RL-VQKRSGSVNGGMSDIYRLLAAEISKD----IGTPAYRDIDRIDL--- 229 (320)
T ss_pred CcccCcCcEEEEecCCCeeeeehcc--CC-EE-cccccCCchhHHHHHHHHHHHHHHhh----cCCCCccCHHHHHH---
Confidence 12456789999999999998775 44 33 44555556688888888887776544 44431112222221
Q ss_pred HHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChh
Q psy7639 1633 AAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712 (2568)
Q Consensus 1633 ~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~ 1712 (2568)
....-|... + .+... .|+ +.-+..+..+++++.-+.+.+. ...+++.|+|+||.+. .
T Consensus 230 ~l~~g~~~~---------~----~gk~~--di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--l 286 (320)
T TIGR03739 230 ALRTGKQPR---------I----YQKPV--DIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--L 286 (320)
T ss_pred HHHhCCcee---------e----cceec--Cch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--H
Confidence 111111100 0 11111 122 1112233333444433333332 2245889999999987 6
Q ss_pred HHHHHHhhhcCCcccccCCchhhhhccHHHHH
Q psy7639 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1713 V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a 1744 (2568)
+++.|++.|+...+....||..|.|.|-..+|
T Consensus 287 l~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 287 FKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 78999999976566567799999999976554
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.4e-07 Score=115.80 Aligned_cols=247 Identities=19% Similarity=0.226 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCceE
Q psy7639 687 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV 765 (2568)
Q Consensus 687 eev~a~iL~~L~~~ae~~~~~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~v 765 (2568)
-+....+++++.... -.....-..++++.|..++..+|+.+.+.+ +..|+..+.++++|.+|+++++.. +-
T Consensus 73 ~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tg 144 (393)
T PF00022_consen 73 WDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------TG 144 (393)
T ss_dssp HHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SE
T ss_pred ccccccccccccccc-cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------cc
Confidence 345566666665543 112233456999999999999999887665 577999999999999999988654 56
Q ss_pred EEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHH-H--hhhccC---CC-CCHHHHHHHHHHH
Q psy7639 766 LIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF-K--RKYKKD---MS-VNPRALRRLRTAA 838 (2568)
Q Consensus 766 lV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~-~--~~~~~~---~~-~~~~~~~~L~~~~ 838 (2568)
+|+|+|.+.+.|+-+- +|. -+........+||.++++.|.+.|..+- . ..+... .. ........-...+
T Consensus 145 lVVD~G~~~t~v~pV~--dG~--~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (393)
T PF00022_consen 145 LVVDIGYSSTSVVPVV--DGY--VLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIV 220 (393)
T ss_dssp EEEEESSS-EEEEEEE--TTE--E-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHH
T ss_pred cccccceeeeeeeeee--ecc--ccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccc
Confidence 9999999999887663 562 2222233467999999999988887631 0 000000 00 0010001112223
Q ss_pred HHHHHhcC---------------CCCcceeeeccccCCcceEEecchHhHHHHHHHHHH----------------hHHHH
Q psy7639 839 ERAKRTLS---------------SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFR----------------STLQP 887 (2568)
Q Consensus 839 E~aK~~LS---------------~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~----------------~i~~~ 887 (2568)
+.+|+.+. ......+. +.++. .+.+..+.| .+.+.+|+ .+.+.
T Consensus 221 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~---lPdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~ 294 (393)
T PF00022_consen 221 EEIKEECCYVSEDPDEEQEEQASENPEKSYE---LPDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPEL 294 (393)
T ss_dssp HHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHH
T ss_pred hhccchhhhcccccccccccccccccceecc---ccccc--ccccccccc-cccccccccccccccccccccccchhhhh
Confidence 33333321 11122222 22443 445555444 23333333 46677
Q ss_pred HHHHHHHccCCccC--cCeEEEEcCCCCcHHHHHHHHHHhCC-------ccccccC-CchhHHHhhHHHHHHHH
Q psy7639 888 VEKALQDAKLDKSA--IHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSI-NPDEAVAYGAAVQAAIL 951 (2568)
Q Consensus 888 i~~~L~~a~~~~~~--I~~ViLvGGssriP~v~~~l~~~f~~-------~~v~~~~-npdeaVA~GAAl~aa~l 951 (2568)
|.+++..+..+... ...|+|+||+|++|.+.++|.+.+.. ..+.... +|..++=.||+++|..-
T Consensus 295 I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 295 ILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 77888776533221 57899999999999999999877632 2333344 79999999999998753
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=114.44 Aligned_cols=246 Identities=19% Similarity=0.229 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEE
Q psy7639 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 193 (2568)
Q Consensus 115 el~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vl 193 (2568)
+....+|+++....- .....-..++++.|..++...|+.+.+.+ +..|+..+.++++|.+|+++++.. +-+
T Consensus 74 ~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tgl 145 (393)
T PF00022_consen 74 DALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------TGL 145 (393)
T ss_dssp HHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEE
T ss_pred ccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------ccc
Confidence 344556666654421 11223356999999999999999887775 566999999999999999888655 569
Q ss_pred EEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHH-H--hhhcccCC----CCHHHHHHHHHHHH
Q psy7639 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF-K--RKYKKDMS----VNPRALRRLRTAAE 266 (2568)
Q Consensus 194 V~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~-~--~~~~~~~~----~~~~~~~~L~~~aE 266 (2568)
|+|+|.+.+.++-+- +|. -+........+||.++++.|.+.|.++- . ..+..... ...-....-...++
T Consensus 146 VVD~G~~~t~v~pV~--dG~--~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (393)
T PF00022_consen 146 VVDIGYSSTSVVPVV--DGY--VLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVE 221 (393)
T ss_dssp EEEESSS-EEEEEEE--TTE--E-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHH
T ss_pred ccccceeeeeeeeee--ecc--ccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccch
Confidence 999999999888763 452 2222223367899999999988887731 0 00000000 00000001111223
Q ss_pred HHHHhc---------------CCCCceEEEEeeeccCcceEEeecHHHH---HHHHhhhhh------------hhHHHHH
Q psy7639 267 RAKRTL---------------SSSTEASIEIDALYDGIDFYTKISRARF---EELCSDLFR------------STLQPVE 316 (2568)
Q Consensus 267 ~aK~~L---------------S~~~~~~i~i~~l~~~~d~~~~itR~ef---e~l~~~l~~------------~i~~~i~ 316 (2568)
.+|+.+ +......+.+ .++. .+.+..+.| |-++.|... .+.+.|.
T Consensus 222 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~ 296 (393)
T PF00022_consen 222 EIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELIL 296 (393)
T ss_dssp HHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHH
T ss_pred hccchhhhcccccccccccccccccceeccc---cccc--ccccccccccccccccccccccccccccccccchhhhhhh
Confidence 333221 1122233322 3444 455665555 334444321 5778888
Q ss_pred HHHHHcCCCCCC--CCeEEEcCCccchHHHHHHHHHHhCC-------CcccccC-CchhHHHhhHHHHHHH
Q psy7639 317 KALQDAKLDKSA--IHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSI-NPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 317 ~~l~~a~~~~~~--i~~ViLvGG~sriP~v~~~l~~~f~~-------~~v~~~~-npdeaVA~GAa~~aa~ 377 (2568)
+++..+...... ...|+|+||+|++|.+.++|+..+.. ..+..+. +|..++=.||+++|..
T Consensus 297 ~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 297 DSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 888887643222 68999999999999999999987732 1233344 7999999999999864
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=111.46 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=114.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhh-----ccccccCcc-eEEEEEeCCcceEEEEEEecCC
Q psy7639 1508 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-----LDKNLKGER-NVLIFDLGGGTFDVSILSIDEG 1581 (2568)
Q Consensus 1508 ~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~-----~~~~~~~~~-~vlV~D~GGGT~Dvsi~~~~~g 1581 (2568)
.++++| ....+.+.++++.|||++..+.-+|.|.+-.+. ... ..... .++++|+|++|++++++. +|
T Consensus 136 ~v~a~~----~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~-~~~~~~~~~lvdiG~~~t~l~i~~--~g 208 (348)
T TIGR01175 136 LLAATR----KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLAS-RTYRLTDAALVDIGATSSTLNLLH--PG 208 (348)
T ss_pred EEEEec----HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCcc-ccccCceEEEEEECCCcEEEEEEE--CC
Confidence 455554 456677889999999999999999999876663 111 11233 499999999999999998 67
Q ss_pred cEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCccee
Q psy7639 1582 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFY 1661 (2568)
Q Consensus 1582 ~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~ 1661 (2568)
. +..+.. -..||.+|++.|++.+ +.+ .+.||+.|+.-....
T Consensus 209 ~---~~~~r~-i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~---------------- 249 (348)
T TIGR01175 209 R---MLFTRE-VPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL---------------- 249 (348)
T ss_pred e---EEEEEE-eechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC----------------
Confidence 3 222222 3489999999887542 222 246777776432110
Q ss_pred eecCHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCCccccEEEEecCccCChhHHHHHHhhhc
Q psy7639 1662 TKISRARFEELCSDLFRSTLQPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 1722 (2568)
Q Consensus 1662 ~~itr~~fe~l~~pli~~i~~~i~~~L~~a--~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~ 1722 (2568)
. .-.+++++.++++..-|.+.|+-. ......++.|+|+||.+++|.+.+.+++.|+
T Consensus 250 ---~--~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 250 ---L--YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred ---c--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 0 013456777777777777877533 2233458999999999999999999999994
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.7e-06 Score=108.27 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeeecchhHHHHHHhc-----cccCCCCCc-eEEEEEeCCceeEEEEEEEcCCcEEEEEeec
Q psy7639 721 NDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-----LDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTA 794 (2568)
Q Consensus 721 ~~~qr~al~~Aa~~AGl~~l~li~Ep~AAAl~y~-----~~~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~ 794 (2568)
.....+.+.++++.||+++..+..+|.|.+-.+. ... ..... .++++|+|+++++++++. +|...- .
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~-~~~~~~~~~lvdiG~~~t~l~i~~--~g~~~~----~ 213 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLAS-RTYRLTDAALVDIGATSSTLNLLH--PGRMLF----T 213 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCcc-ccccCceEEEEEECCCcEEEEEEE--CCeEEE----E
Confidence 3566778889999999999999999999876663 111 12233 499999999999999986 452222 2
Q ss_pred cCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCcceeeeccccCCcceEEecchHhHH
Q psy7639 795 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE 874 (2568)
Q Consensus 795 gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe 874 (2568)
....+||.+|++.|.+.+. .+ ..+||+.|..-..... .-.
T Consensus 214 r~i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~~---------------------~~~ 253 (348)
T TIGR01175 214 REVPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPLL---------------------YDP 253 (348)
T ss_pred EEeechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCCc---------------------hhH
Confidence 2356899999988764331 11 2467777765322110 012
Q ss_pred HHHHHHHHhHHHHHHHHHHHc--cCCccCcCeEEEEcCCCCcHHHHHHHHHHhC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 926 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a--~~~~~~I~~ViLvGGssriP~v~~~l~~~f~ 926 (2568)
+.+++.++++...|.+.|+-. ......++.|+|+||++++|.+.+.+++.|+
T Consensus 254 ~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 254 EVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 356667777777777777532 2223359999999999999999999999995
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-06 Score=109.89 Aligned_cols=222 Identities=18% Similarity=0.182 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCC---CC
Q psy7639 688 EISSMVLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNL---KG 761 (2568)
Q Consensus 688 ev~a~iL~~L~~~ae~~~~~--~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~---~~ 761 (2568)
+....++.++... .+.. .-..+++|.|..++..+|+.+.+.+ +..+.+.+.+.++|.+|++++...... ..
T Consensus 82 d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 82 DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 4555566664332 1222 2345899999999999999988776 555999999999999999987432211 12
Q ss_pred CceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q psy7639 762 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERA 841 (2568)
Q Consensus 762 ~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~a 841 (2568)
..+-||+|+|+|+++++-+. +|.. +.....-..+||.++++.|.+.|.+. +..+... ..+..++.+
T Consensus 159 ~~tglVVDiG~~~T~i~PV~--~G~~--l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~i 224 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVV--DGYV--IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRI 224 (414)
T ss_pred ceeEEEEECCCCceEEEEEE--CCEE--cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHH
Confidence 34669999999999998764 4522 22222235789999999998887542 1111111 112235566
Q ss_pred HHhcCCCC-----------------cceeeeccccCCcceEEecchHhHH---HHHHHHH------HhHHHHHHHHHHHc
Q psy7639 842 KRTLSSST-----------------EASIEIDALYDGIDFYTKISRARFE---ELCSDLF------RSTLQPVEKALQDA 895 (2568)
Q Consensus 842 K~~LS~~~-----------------~~~i~i~~l~~~~d~~~~itr~efe---~l~~~l~------~~i~~~i~~~L~~a 895 (2568)
|+.+..-. ...+..+...++....+.|..+.|. -++.|-+ ..+.+.|.++|.++
T Consensus 225 Ke~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~ 304 (414)
T PTZ00280 225 KEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSC 304 (414)
T ss_pred HHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhC
Confidence 66554211 0112222222233446677776664 3444422 14566777777766
Q ss_pred cCC--ccCcCeEEEEcCCCCcHHHHHHHHHHhC
Q psy7639 896 KLD--KSAIHDVVLVGGSTRIPKVQSLLQNFFC 926 (2568)
Q Consensus 896 ~~~--~~~I~~ViLvGGssriP~v~~~l~~~f~ 926 (2568)
..+ ..=.+.|+|+||+|.+|.+.++|++.+.
T Consensus 305 ~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 305 PIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred ChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 433 2226789999999999999999998773
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.1e-06 Score=109.12 Aligned_cols=224 Identities=17% Similarity=0.142 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHH-HHcCCceEEEEechhHHHHHhhcccccc---Ccc
Q psy7639 1484 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLK---GER 1559 (2568)
Q Consensus 1484 ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa-~~AGL~v~~li~EPtAAal~y~~~~~~~---~~~ 1559 (2568)
+....+++++.... -........+++|.|..+...+|+.|.+.+ +..+..-+.++++|.+|++++....... ...
T Consensus 82 d~~e~l~~~~~~~~-L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKY-LRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHh-hccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 34445666543221 011222456899999999999999887665 4458899999999999998864322110 223
Q ss_pred eEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhc
Q psy7639 1560 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR 1639 (2568)
Q Consensus 1560 ~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~ 1639 (2568)
+-||+|+|.|+++|+-+- +|... .....-..+||.++|+.|.+.|.++ +..+. .. .....++..|+
T Consensus 161 tglVVDiG~~~T~i~PV~--~G~~l--~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~---~~~~~~~~iKe 226 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVV--DGYVI--GSSIKHIPLAGRDITNFIQQMLRER-----GEPIP--AE---DILLLAQRIKE 226 (414)
T ss_pred eEEEEECCCCceEEEEEE--CCEEc--ccceEEecCcHHHHHHHHHHHHHHc-----CCCCC--cH---HHHHHHHHHHH
Confidence 569999999999999886 67322 1111223589999999999987542 11111 11 11233555555
Q ss_pred ccCCCC-----------------eeEEEEccccCCcceeeecCHHHHH---HHHhHHH------HHHHHHHHHHHHHcC-
Q psy7639 1640 TLSSST-----------------EASIEIDALYDGIDFYTKISRARFE---ELCSDLF------RSTLQPVEKALQDAK- 1692 (2568)
Q Consensus 1640 ~Ls~~~-----------------~~~i~i~~~~~~~~~~~~itr~~fe---~l~~pli------~~i~~~i~~~L~~a~- 1692 (2568)
.++... ......+...++....+.|..+.|. -+|+|-+ ..+.+.|.++|....
T Consensus 227 ~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~ 306 (414)
T PTZ00280 227 KYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPI 306 (414)
T ss_pred hcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCCh
Confidence 544211 0112333223344456677776663 4555532 145566666666542
Q ss_pred -CCCccccEEEEecCccCChhHHHHHHhhhc
Q psy7639 1693 -LDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 1722 (2568)
Q Consensus 1693 -~~~~~Id~ViLVGGssr~P~V~~~I~~~f~ 1722 (2568)
+...=.+.|+|+||+|.+|.+.++|.+.+.
T Consensus 307 d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 307 DCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred hhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 222224569999999999999999988874
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-06 Score=107.42 Aligned_cols=180 Identities=20% Similarity=0.279 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHcCCceEEEEechhHHHHHhhccc----cccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCC
Q psy7639 1519 AQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK----NLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 1594 (2568)
Q Consensus 1519 ~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~----~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~ 1594 (2568)
..-+...++++.|||++..+--+|-|.+-.|.... .......++++|+|..++.+.++. +|. ...+.. -.
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~---~~f~R~-i~ 209 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGK---PIFSRS-IP 209 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTE---EEEEEE-ES
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCE---EEEEEE-Ee
Confidence 44566788899999999888777777655554421 112346799999999999999998 773 232332 35
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHh
Q psy7639 1595 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCS 1674 (2568)
Q Consensus 1595 lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~ 1674 (2568)
.||.++++.|++.+.- + ..++|..|..-+ +..+...+.+.
T Consensus 210 ~G~~~l~~~i~~~~~i--------~-----------~~~Ae~~k~~~~---------------------l~~~~~~~~l~ 249 (340)
T PF11104_consen 210 IGGNDLTEAIARELGI--------D-----------FEEAEELKRSGG---------------------LPEEYDQDALR 249 (340)
T ss_dssp -SHHHHHHHHHHHTT---------------------HHHHHHHHHHT---------------------------HHHHHH
T ss_pred eCHHHHHHHHHHhcCC--------C-----------HHHHHHHHhcCC---------------------CCcchHHHHHH
Confidence 8999999999887321 1 235565555421 11133456677
Q ss_pred HHHHHHHHHHHHHHHH--cCCCCccccEEEEecCccCChhHHHHHHhhhcCC--------cccccC----------Cchh
Q psy7639 1675 DLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK--------SLNLSI----------NPDE 1734 (2568)
Q Consensus 1675 pli~~i~~~i~~~L~~--a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~--------~v~~~~----------nP~e 1734 (2568)
+.++++..-|.+.|+- .......|+.|+|+||.+++|.+.+.+.+.++-. .+..+. .|..
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~ 329 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQF 329 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHH
Confidence 7777777777777762 2334567999999999999999999999999422 111122 2678
Q ss_pred hhhccHHHHH
Q psy7639 1735 AVAYGAAVQA 1744 (2568)
Q Consensus 1735 AVA~GAai~a 1744 (2568)
+||+|.|+.+
T Consensus 330 avA~GLAlR~ 339 (340)
T PF11104_consen 330 AVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcC
Confidence 8999988764
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.4e-06 Score=106.28 Aligned_cols=233 Identities=17% Similarity=0.186 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHhCC--CCCeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEE
Q psy7639 117 SSMVLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 193 (2568)
Q Consensus 117 ~a~~L~~l~~~ae~~l~~--~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vl 193 (2568)
+..++.|+... .+.. .-..+++|-|..++..+|+.|.+.. +.-+...+.+.+.|.+++++++. .+-+
T Consensus 82 ~e~iw~~~f~~---~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tgl 151 (375)
T PTZ00452 82 IEIIWHHAFYN---ELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGL 151 (375)
T ss_pred HHHHHHHHHHh---hcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceee
Confidence 34456555322 2222 2356899999999999999997775 55588889999999999987753 3579
Q ss_pred EEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcC
Q psy7639 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 273 (2568)
Q Consensus 194 V~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS 273 (2568)
|+|+|.|.++++-+- +|. -+........+||.++++-|.+.|.++ +..+... .. +..++.+|+.+.
T Consensus 152 VVDiG~~~t~v~PV~--dG~--~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c 217 (375)
T PTZ00452 152 VVDSGEGVTHCVPVF--EGH--QIPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLC 217 (375)
T ss_pred eecCCCCcceEEEEE--CCE--EeccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhc
Confidence 999999999987663 452 222222335789999999888776432 1111111 00 112334444432
Q ss_pred CC--------------CceEEEEeeeccCcceEEeecHHHH---HHHHhhhh-----hhhHHHHHHHHHHcCCC--CCCC
Q psy7639 274 SS--------------TEASIEIDALYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDAKLD--KSAI 329 (2568)
Q Consensus 274 ~~--------------~~~~i~i~~l~~~~d~~~~itR~ef---e~l~~~l~-----~~i~~~i~~~l~~a~~~--~~~i 329 (2568)
.- ....... .+.+|. .+.+..+.| |-++.|-+ ..+.+++.+++..+... ..-.
T Consensus 218 ~v~~d~~~e~~~~~~~~~~~~~y-~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~ 294 (375)
T PTZ00452 218 YTALDPQDEKRIYKESNSQDSPY-KLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELC 294 (375)
T ss_pred cccCcHHHHHHHhhccCCcCceE-ECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhh
Confidence 11 0001111 123443 356677766 34444432 24567777888776533 2227
Q ss_pred CeEEEcCCccchHHHHHHHHHHhCC-----Cc--ccccCCchhHHHhhHHHHHH
Q psy7639 330 HDVVLVGGSTRIPKVQSLLQNFFCG-----KS--LNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 330 ~~ViLvGG~sriP~v~~~l~~~f~~-----~~--v~~~~npdeaVA~GAa~~aa 376 (2568)
..|+|+||+|.+|.+.++|+..+.. .+ +..+.++..++=.|+++.|.
T Consensus 295 ~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 295 RNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred ccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 7999999999999999999987722 11 22234555667778888775
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3e-06 Score=109.66 Aligned_cols=217 Identities=18% Similarity=0.244 Sum_probs=138.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEE
Q psy7639 137 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 215 (2568)
Q Consensus 137 ~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~ 215 (2568)
..+++|-|..+...+|+.|.+.+ +..++..+.+...|.+++++++. .+-+|+|+|.+.+.++-+- +|.
T Consensus 102 ~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~PV~--dG~-- 170 (376)
T PTZ00281 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTVPIY--EGY-- 170 (376)
T ss_pred CeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEEEEE--ecc--
Confidence 46888999999999999998754 66688999999999999987753 2679999999999887442 242
Q ss_pred EEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCC------------ceEEEEe
Q psy7639 216 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST------------EASIEID 283 (2568)
Q Consensus 216 ~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~------------~~~i~i~ 283 (2568)
.+........+||.++++.|.+.|..+ +..+.. ... +..++.+|+.+..-. .......
T Consensus 171 ~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 171 ALPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-TAE----REIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred cchhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-HHH----HHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 222222235799999999888876442 111111 111 123455555533110 0001111
Q ss_pred -eeccCcceEEeecHHHH---HHHHhhhh-----hhhHHHHHHHHHHcCCCC--CCCCeEEEcCCccchHHHHHHHHHHh
Q psy7639 284 -ALYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLLQNFF 352 (2568)
Q Consensus 284 -~l~~~~d~~~~itR~ef---e~l~~~l~-----~~i~~~i~~~l~~a~~~~--~~i~~ViLvGG~sriP~v~~~l~~~f 352 (2568)
.+.++.. +.|..+.| |.++.|-+ ..+.+.|.+++..+.... .-.+.|+|+||+|.+|.+.++|+..+
T Consensus 241 y~LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El 318 (376)
T PTZ00281 241 YELPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKEL 318 (376)
T ss_pred EECCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHH
Confidence 1234433 45665555 44555432 256677888887765332 22678999999999999999998877
Q ss_pred CCC-------cccccCCchhHHHhhHHHHHH
Q psy7639 353 CGK-------SLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 353 ~~~-------~v~~~~npdeaVA~GAa~~aa 376 (2568)
... .+..+.++..++=+||++.|.
T Consensus 319 ~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 319 TALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 211 233344667788888888775
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.8e-06 Score=105.70 Aligned_cols=181 Identities=20% Similarity=0.292 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCCCeeeecchhHHHHHHhcccc-C---CCCCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCC
Q psy7639 722 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK-N---LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDT 797 (2568)
Q Consensus 722 ~~qr~al~~Aa~~AGl~~l~li~Ep~AAAl~y~~~~-~---~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~ 797 (2568)
...-+...++++.|||++..+=-+|.|.+-.|.... . ......++++|+|+.++.++++. +|...-. ...
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f~----R~i 208 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIFS----RSI 208 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEEE----EEE
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEEE----EEE
Confidence 345667788999999999888777777655443321 1 12346799999999999999986 4522222 235
Q ss_pred CCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCcceeeeccccCCcceEEecchHhHHHHH
Q psy7639 798 HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELC 877 (2568)
Q Consensus 798 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~ 877 (2568)
..||.++++.|.+.+.-.+. +||..|..-+... +...+.+
T Consensus 209 ~~G~~~l~~~i~~~~~i~~~-------------------~Ae~~k~~~~l~~---------------------~~~~~~l 248 (340)
T PF11104_consen 209 PIGGNDLTEAIARELGIDFE-------------------EAEELKRSGGLPE---------------------EYDQDAL 248 (340)
T ss_dssp S-SHHHHHHHHHHHTT--HH-------------------HHHHHHHHT---------------------------HHHHH
T ss_pred eeCHHHHHHHHHHhcCCCHH-------------------HHHHHHhcCCCCc---------------------chHHHHH
Confidence 78999999998876543332 5566665422111 2234567
Q ss_pred HHHHHhHHHHHHHHHH--HccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCc--------cccccC----------Cch
Q psy7639 878 SDLFRSTLQPVEKALQ--DAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK--------SLNLSI----------NPD 937 (2568)
Q Consensus 878 ~~l~~~i~~~i~~~L~--~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~--------~v~~~~----------npd 937 (2568)
.+.++++...|++.++ ........|+.|+|+||++++|.+.+.|++.++-. .+..+. .|.
T Consensus 249 ~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 249 RPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 7777777777777777 23334557999999999999999999999999421 111111 367
Q ss_pred hHHHhhHHHHH
Q psy7639 938 EAVAYGAAVQA 948 (2568)
Q Consensus 938 eaVA~GAAl~a 948 (2568)
.++|.|.|+++
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 88999999875
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.3e-05 Score=101.67 Aligned_cols=217 Identities=16% Similarity=0.179 Sum_probs=138.9
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcE
Q psy7639 136 VRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGAL 214 (2568)
Q Consensus 136 ~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~ 214 (2568)
-..+++|-|..++..+|+.+.+.+ +..|+..+.++++|.+++++++. .+-+|+|+|+++++++-+- +|..
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV~--dG~~ 171 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYS 171 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEEE--CCEE
Confidence 346789999999999998887765 56699999999999999988753 3569999999999997763 3522
Q ss_pred EEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCC---------------CceE
Q psy7639 215 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS---------------TEAS 279 (2568)
Q Consensus 215 ~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~---------------~~~~ 279 (2568)
+........+||.++++.|.+.|..+ +..+ ++... ..-++..|+.+..- ....
T Consensus 172 --l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~--~~~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~ 239 (378)
T PTZ00004 172 --LPHAIHRLDVAGRDLTEYMMKILHER-----GTTF--TTTAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYE 239 (378)
T ss_pred --eecceeeecccHHHHHHHHHHHHHhc-----CCCC--CcHHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccc
Confidence 22222235799999999888877432 1111 11111 11234444443210 0001
Q ss_pred EEEeeeccCcceEEeecHHHH---HHHHhhh------hhhhHHHHHHHHHHcCCCC--CCCCeEEEcCCccchHHHHHHH
Q psy7639 280 IEIDALYDGIDFYTKISRARF---EELCSDL------FRSTLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLL 348 (2568)
Q Consensus 280 i~i~~l~~~~d~~~~itR~ef---e~l~~~l------~~~i~~~i~~~l~~a~~~~--~~i~~ViLvGG~sriP~v~~~l 348 (2568)
... .+.+|.. +.|..+.| |-+|.|- ...+.+.|.+++..+..+. .-...|+|+||+|.+|.+.++|
T Consensus 240 ~~y-~lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL 316 (378)
T PTZ00004 240 ESY-ELPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERL 316 (378)
T ss_pred eEE-ECCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHH
Confidence 111 1234443 45666665 3466653 3456678888888775432 2267899999999999999999
Q ss_pred HHHhCCC-------cccccCCchhHHHhhHHHHHH
Q psy7639 349 QNFFCGK-------SLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 349 ~~~f~~~-------~v~~~~npdeaVA~GAa~~aa 376 (2568)
+..+... .+..+.++..++=.||++.|.
T Consensus 317 ~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 317 TKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9877311 223344566677778877764
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=102.22 Aligned_cols=233 Identities=17% Similarity=0.187 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCce
Q psy7639 688 EISSMVLTKMKETAEAYLG--HSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 764 (2568)
Q Consensus 688 ev~a~iL~~L~~~ae~~~~--~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~ 764 (2568)
+....++.++.. ..++ ..-..+++|-|..++..+|+.+.+.+ +..|+..+.+.++|.+|+++++. .+
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~t 150 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TT 150 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ce
Confidence 445556666432 2232 23346789999999999998876665 66799999999999999988753 36
Q ss_pred EEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHh
Q psy7639 765 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT 844 (2568)
Q Consensus 765 vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~ 844 (2568)
-+|+|+|.+.++++-+. +|. -+.......++||.++++.|.+.|... +..+. +... ...++..|+.
T Consensus 151 glVVDiG~~~t~v~pV~--dG~--~l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~~~---~~~~~~iKe~ 216 (378)
T PTZ00004 151 GIVLDSGDGVSHTVPIY--EGY--SLPHAIHRLDVAGRDLTEYMMKILHER-----GTTFT--TTAE---KEIVRDIKEK 216 (378)
T ss_pred EEEEECCCCcEEEEEEE--CCE--EeecceeeecccHHHHHHHHHHHHHhc-----CCCCC--cHHH---HHHHHHHhhc
Confidence 79999999999887664 452 222333345799999999888877432 11111 1111 1123444444
Q ss_pred cCCC---------------C--cceeeeccccCCcceEEecchHhH---HHHHHHH------HHhHHHHHHHHHHHccCC
Q psy7639 845 LSSS---------------T--EASIEIDALYDGIDFYTKISRARF---EELCSDL------FRSTLQPVEKALQDAKLD 898 (2568)
Q Consensus 845 LS~~---------------~--~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~l------~~~i~~~i~~~L~~a~~~ 898 (2568)
+... . ...+. +.+|..+ .+..+.| |-++.|- ...+.+.|.+++..+..+
T Consensus 217 ~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~~i--~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d 291 (378)
T PTZ00004 217 LCYIALDFDEEMGNSAGSSDKYEESYE---LPDGTII--TVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDID 291 (378)
T ss_pred ceeecCCHHHHHhhhhcCccccceEEE---CCCCCEE--EEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChh
Confidence 3211 0 11111 3344433 3444443 2345553 234556777777765433
Q ss_pred --ccCcCeEEEEcCCCCcHHHHHHHHHHhCC-------ccccccCCchhHHHhhHHHHHH
Q psy7639 899 --KSAIHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSINPDEAVAYGAAVQAA 949 (2568)
Q Consensus 899 --~~~I~~ViLvGGssriP~v~~~l~~~f~~-------~~v~~~~npdeaVA~GAAl~aa 949 (2568)
..=...|+|+||+|.+|.+.++|+..+.. ..+..+.++..++=+||+++|.
T Consensus 292 ~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 292 IRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 22267899999999999999999877632 1233344666777778888775
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=100.85 Aligned_cols=237 Identities=18% Similarity=0.216 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CCCeEEEEEcCCCCHHHHHHHHHH-HHHcCCCeeeecchhHHHHHHhccccCCCCCce
Q psy7639 688 EISSMVLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 764 (2568)
Q Consensus 688 ev~a~iL~~L~~~ae~~~~~--~~~~~VITVPa~f~~~qr~al~~A-a~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~ 764 (2568)
+....++.++... .+.. .-..+++|-|..+...+|+.|.+. .+..+...+.+...|.+++++++. .+
T Consensus 81 d~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~t 150 (376)
T PTZ00281 81 DDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TT 150 (376)
T ss_pred HHHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ce
Confidence 3444555555432 2332 335688899999999999998775 466799999999999999988753 36
Q ss_pred EEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHh
Q psy7639 765 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT 844 (2568)
Q Consensus 765 vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~ 844 (2568)
-+|+|+|.+.+.++-+. +|. .+........+||.++++.|.+.|... +..+.. . .. +..++.+|+.
T Consensus 151 glVVDiG~~~t~v~PV~--dG~--~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~ 216 (376)
T PTZ00281 151 GIVMDSGDGVSHTVPIY--EGY--ALPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEK 216 (376)
T ss_pred EEEEECCCceEEEEEEE--ecc--cchhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHh
Confidence 79999999999876443 352 233333346799999999888776432 111111 0 11 1234555555
Q ss_pred cCCCC---c---------ceeeec-cccCCcceEEecchHhH---HHHHHHHH-----HhHHHHHHHHHHHccCCc--cC
Q psy7639 845 LSSST---E---------ASIEID-ALYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDAKLDK--SA 901 (2568)
Q Consensus 845 LS~~~---~---------~~i~i~-~l~~~~d~~~~itr~ef---e~l~~~l~-----~~i~~~i~~~L~~a~~~~--~~ 901 (2568)
+..-. . ...... .+.++.. +.|..+.| |-|++|-+ ..+.+.|.+++..+..+. .-
T Consensus 217 ~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L 294 (376)
T PTZ00281 217 LAYVALDFEAEMQTAASSSALEKSYELPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 294 (376)
T ss_pred cEEecCCchHHHHhhhcCcccceeEECCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHH
Confidence 43211 0 000000 1234433 34444443 34444422 135566677776654321 22
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHHhCCc-------cccccCCchhHHHhhHHHHHHH
Q psy7639 902 IHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 902 I~~ViLvGGssriP~v~~~l~~~f~~~-------~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
.+.|+|+||+|.+|.+.++|+..+... ++..+.++..++=+||+++|+.
T Consensus 295 ~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 295 YGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 568999999999999999998776221 2333456677888899888863
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00031 Score=95.72 Aligned_cols=333 Identities=19% Similarity=0.254 Sum_probs=192.9
Q ss_pred ccccccccchhhhhHHHHhhhcCCCcccccccccc--------ccccCChhhhhc----ccccccE-EeeCCCCCceeE-
Q psy7639 1406 LTESEKSRCREECDAAKNQVAMNPKNTVFDAKRLI--------GRKFDDPKIQQD----MKHWPFT-VVNDCSKPKIQV- 1471 (2568)
Q Consensus 1406 ~tPS~v~~~~~~G~~A~~~~~~~p~~tv~~~k~~i--------g~~~~d~~~~~~----~k~~~~~-~~~~~~~~~~~v- 1471 (2568)
.=||.|....+-+.-|..+..+.....+++.||++ |.+|+......+ ....||. .++..+.+-+.+
T Consensus 325 ~WPSivRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~ 404 (1002)
T PF07520_consen 325 VWPSIVRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLD 404 (1002)
T ss_pred cCCCcceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhc
Confidence 34777766444444444445566788899999988 444432211000 1112221 123334443333
Q ss_pred E----ecCCccccCHHHHHHHHHHHHHHHHHHHhCCc--------------cceEEEEecCCCCHHHHHHHHHHHHHc--
Q psy7639 1472 E----FKGERKTFAPEEISSMVLTKMKETAEAYLGHS--------------VRDAVITVPAYFNDAQRQATKDAGAIA-- 1531 (2568)
Q Consensus 1472 ~----~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~--------------~~~~ViTVPa~f~~~qR~~~~~Aa~~A-- 1531 (2568)
. ...-...||=..+..+.|..+..+|--+.+.+ ..++++|||.......|+.++++++.|
T Consensus 405 ~~~~r~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~ 484 (1002)
T PF07520_consen 405 PEDERLPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIG 484 (1002)
T ss_pred CccccCccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1 11123456667778888888888777766543 446999999999999999999888776
Q ss_pred ------CC---------------------ceEEEEechhHHHHHhhccc------------------c---------ccC
Q psy7639 1532 ------GL---------------------NVMRIVNEPTAAALAYGLDK------------------N---------LKG 1557 (2568)
Q Consensus 1532 ------GL---------------------~v~~li~EPtAAal~y~~~~------------------~---------~~~ 1557 (2568)
|. ++..=-+|.||.-+.|.... . ...
T Consensus 485 LvWk~lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~ 564 (1002)
T PF07520_consen 485 LVWKALGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGP 564 (1002)
T ss_pred HHHHHcCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCC
Confidence 42 22233477777665554421 0 111
Q ss_pred cceEEEEEeCCcceEEEEEEec----CCcEEEEE----EecCCCCCChhHHHHHHHH-HHHHHHHhh-------------
Q psy7639 1558 ERNVLIFDLGGGTFDVSILSID----EGALFEVR----STAGDTHLGGEDFDNRLVS-HLAEEFKRK------------- 1615 (2568)
Q Consensus 1558 ~~~vlV~D~GGGT~Dvsi~~~~----~g~~~ev~----~~~gd~~lGG~d~D~~l~~-~l~~~~~~~------------- 1615 (2568)
.-+|.-+|+||||+|..|-... .|....+. .-.|-. ..|+|+-..+.+ +++-.+.+.
T Consensus 565 slriASIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFk-vAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll 643 (1002)
T PF07520_consen 565 SLRIASIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFK-VAGDDILLDVIQRIVLPALQQALKKAGVADPRALL 643 (1002)
T ss_pred ceEEEEEecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcc-cccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHH
Confidence 2457889999999999997664 33333332 223433 567777665554 444333322
Q ss_pred ---hcCCCCCCH-H-------------HHHHHHHHHHHhhcccCCCCeeEEEE--------------c----------cc
Q psy7639 1616 ---YKKDMSVNP-R-------------ALRRLRTAAERAKRTLSSSTEASIEI--------------D----------AL 1654 (2568)
Q Consensus 1616 ---~~~~~~~~~-~-------------~~~~L~~~~E~aK~~Ls~~~~~~i~i--------------~----------~~ 1654 (2568)
+|.+-.... + ....++.+||+.=..-. .......+ . ..
T Consensus 644 ~~LfG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~-~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~ 722 (1002)
T PF07520_consen 644 SRLFGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDP-SAEIDATFGELLEREPPTAAVLDYINEEVRRLPAG 722 (1002)
T ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCC
Confidence 222200000 0 01135566665321100 00000000 0 00
Q ss_pred ---cCCcceeeecCHHHHHHHHh---HHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCC----
Q psy7639 1655 ---YDGIDFYTKISRARFEELCS---DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK---- 1724 (2568)
Q Consensus 1655 ---~~~~~~~~~itr~~fe~l~~---pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~---- 1724 (2568)
.+-.++.+.++.+++...+- -.|.+++..+-+++...+ +|-++|+|--|++|.||..+++..+-.
T Consensus 723 ~~~Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RI 797 (1002)
T PF07520_consen 723 APDFDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRI 797 (1002)
T ss_pred CCCcceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccE
Confidence 01123356789999988774 677788887788887765 567999999999999999999986311
Q ss_pred ---------------cccccCCchhhhhccHHHHHH
Q psy7639 1725 ---------------SLNLSINPDEAVAYGAAVQAA 1745 (2568)
Q Consensus 1725 ---------------~v~~~~nP~eAVA~GAai~a~ 1745 (2568)
...+--||...||.||.+..-
T Consensus 798 v~l~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~L 833 (1002)
T PF07520_consen 798 VPLHGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLL 833 (1002)
T ss_pred EecCCeeecccccCCCCCcCCCchHHHHHHHHHHHH
Confidence 111345899999999987763
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.9e-05 Score=96.92 Aligned_cols=236 Identities=15% Similarity=0.164 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCceEE
Q psy7639 688 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 766 (2568)
Q Consensus 688 ev~a~iL~~L~~~ae~~~~~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vl 766 (2568)
+....+++++.+.. .....-..+++|-|..++..+|+.|.+.+ +..++..+.+.+.|.+|+++++. .+-+
T Consensus 87 d~~e~iw~~~f~~l--~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tgl 157 (380)
T PTZ00466 87 NDMENIWIHVYNSM--KINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGT 157 (380)
T ss_pred HHHHHHHHHHHhhc--ccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEE
Confidence 44555555554321 11223446888999999999999986665 66788999999999999988753 3679
Q ss_pred EEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy7639 767 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 846 (2568)
Q Consensus 767 V~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS 846 (2568)
|+|+|.+.+.++-+- +|. .+........+||.++++-|.+.+.+. +..... .. -+..++.+|+.+.
T Consensus 158 VVD~G~~~t~v~PV~--~G~--~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~v~~iKe~~c 223 (380)
T PTZ00466 158 VLDCGDGVCHCVSIY--EGY--SITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT--SA---EMEVVKNMKENCC 223 (380)
T ss_pred EEeCCCCceEEEEEE--CCE--EeecceeEecCchhHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHHHhCe
Confidence 999999999886553 562 223333335799999999888776431 111110 01 1122344555432
Q ss_pred CC-------------CcceeeeccccCCcceEEecchHhH---HHHHHHHH-----HhHHHHHHHHHHHccCC--ccCcC
Q psy7639 847 SS-------------TEASIEIDALYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDAKLD--KSAIH 903 (2568)
Q Consensus 847 ~~-------------~~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~I~ 903 (2568)
.- ....... .+.+|.. +.|..+.| |-++.|-+ ..+.+.|.+.+.++..+ +.=..
T Consensus 224 ~v~~d~~~e~~~~~~~~~~~~y-~LPdg~~--i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~ 300 (380)
T PTZ00466 224 YVSFNMNKEKNSSEKALTTLPY-ILPDGSQ--ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYS 300 (380)
T ss_pred EecCChHHHHhhccccccceeE-ECCCCcE--EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhh
Confidence 10 0000111 1234433 34555555 33444421 13456666666665433 22267
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhCCc-------cccccCCchhHHHhhHHHHHH
Q psy7639 904 DVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 949 (2568)
Q Consensus 904 ~ViLvGGssriP~v~~~l~~~f~~~-------~v~~~~npdeaVA~GAAl~aa 949 (2568)
.|+|+||+|.+|.+.++|+..+... .+..+.++..++=+||+++|+
T Consensus 301 nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 301 HIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred cEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 8999999999999999998877321 123334556677778888875
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.9e-05 Score=96.94 Aligned_cols=235 Identities=15% Similarity=0.159 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEE
Q psy7639 116 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLI 194 (2568)
Q Consensus 116 l~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV 194 (2568)
....++.|+.+... ....-..+++|-|+.++..+|+.|.+.+ +.-++..+.+.+.|.+|+++++. .+-+|
T Consensus 88 ~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tglV 158 (380)
T PTZ00466 88 DMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGTV 158 (380)
T ss_pred HHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEEE
Confidence 44555666543211 1222346888999999999999987765 55688889999999999988754 36799
Q ss_pred EEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCC
Q psy7639 195 FDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 274 (2568)
Q Consensus 195 ~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~ 274 (2568)
+|+|.+.+.++-+- +|.. +........+||.++++-|.+.|.++ +.... ... -+..++..|+.+..
T Consensus 159 VD~G~~~t~v~PV~--~G~~--~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~~---~~~~v~~iKe~~c~ 224 (380)
T PTZ00466 159 LDCGDGVCHCVSIY--EGYS--ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFN--TSA---EMEVVKNMKENCCY 224 (380)
T ss_pred EeCCCCceEEEEEE--CCEE--eecceeEecCchhHHHHHHHHHHHhc-----CCCCC--cHH---HHHHHHHHHHhCeE
Confidence 99999999986553 3522 22222235799999999888876432 11111 000 11223445544321
Q ss_pred -------------CCceEEEEeeeccCcceEEeecHHHH---HHHHhhhh-----hhhHHHHHHHHHHcCCCC--CCCCe
Q psy7639 275 -------------STEASIEIDALYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDAKLDK--SAIHD 331 (2568)
Q Consensus 275 -------------~~~~~i~i~~l~~~~d~~~~itR~ef---e~l~~~l~-----~~i~~~i~~~l~~a~~~~--~~i~~ 331 (2568)
........ .+.+|. .+.|..+.| |-+|.|-+ ..+.+.|.+.+..+..+. .-...
T Consensus 225 v~~d~~~e~~~~~~~~~~~~y-~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~n 301 (380)
T PTZ00466 225 VSFNMNKEKNSSEKALTTLPY-ILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSH 301 (380)
T ss_pred ecCChHHHHhhccccccceeE-ECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhc
Confidence 00011111 123443 345666666 44555532 245677888887775432 22789
Q ss_pred EEEcCCccchHHHHHHHHHHhCCC-----c--ccccCCchhHHHhhHHHHHH
Q psy7639 332 VVLVGGSTRIPKVQSLLQNFFCGK-----S--LNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 332 ViLvGG~sriP~v~~~l~~~f~~~-----~--v~~~~npdeaVA~GAa~~aa 376 (2568)
|+|+||+|.+|.+.++|+..+... + +..+.++..++=+||+++|.
T Consensus 302 IvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 302 IVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred EEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 999999999999999999887321 1 22234556667778887775
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.7e-05 Score=97.13 Aligned_cols=174 Identities=17% Similarity=0.292 Sum_probs=97.9
Q ss_pred ceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHH
Q psy7639 1534 NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 1613 (2568)
Q Consensus 1534 ~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~ 1613 (2568)
..+.++.||-||.+.+..+. .....+||+|+||+|+|++++. ++ ...+...+|...+|-..+-+.+.+.|...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~--~~~~~~lVVDIGG~T~Dv~~v~--~~-~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~-- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL--DEDESVLVVDIGGRTTDVAVVR--GG-LPDISKCSGTPEIGVSDLYDAIAQALRSA-- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS---TTSEEEEEEE-SS-EEEEEEE--GG-G--EEEEEEETTSSTHHHHHHHHHHTT----
T ss_pred eeEEEEcccHHHHHHHHHhh--cccCcEEEEEcCCCeEEeeeec--CC-ccccchhccCCchhHHHHHHHHHHHHHHh--
Confidence 56678999999988876552 3346799999999999999997 32 22344455656789888888887775431
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Q psy7639 1614 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKL 1693 (2568)
Q Consensus 1614 ~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~ 1693 (2568)
+... +......+.. .+..- .. +...... .=..+++.++++..++++.+-|.+.+.+
T Consensus 214 ---~~~~--s~~~~~~ii~----~~~~~-----~~--~~~~i~~-----~~~~~~v~~~i~~~~~~l~~~i~~~~~~--- 269 (318)
T PF06406_consen 214 ---GIDT--SELQIDDIIR----NRKDK-----GY--LRQVIND-----EDVIDDVSEVIEEAVEELINRILRELGD--- 269 (318)
T ss_dssp ---SBHH--HHHHHHHHHH----TTT-H-----HH--HHHHSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ---cCCC--cHHHHHHHHH----hhhcc-----ce--ecccccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 1100 0011111111 00000 00 0000000 0113344455555555555555555543
Q ss_pred CCccccEEEEecCccCChhHHHHHHhhhc--CCcccccCCchhhhhccHH
Q psy7639 1694 DKSAIHDVVLVGGSTRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAA 1741 (2568)
Q Consensus 1694 ~~~~Id~ViLVGGssr~P~V~~~I~~~f~--~~~v~~~~nP~eAVA~GAa 1741 (2568)
..+++.|+||||.+ .++.+.|++.|+ ...+...-||..|-|.|-+
T Consensus 270 -~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 -FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred -hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 34688999999996 568899999985 3467778899999998843
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=95.35 Aligned_cols=236 Identities=17% Similarity=0.192 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCceEE
Q psy7639 688 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 766 (2568)
Q Consensus 688 ev~a~iL~~L~~~ae~~~~~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vl 766 (2568)
+....++.|+....- .....-..+++|-|..++..+|+.|.+.+ +.-+.+.+.+.+.|.+++++++. .+-+
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tgl 151 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGL 151 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceee
Confidence 344456665532210 12223456899999999999999887765 56788899999999999988753 3679
Q ss_pred EEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy7639 767 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 846 (2568)
Q Consensus 767 V~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS 846 (2568)
|+|+|.|.+.++-+- +|. -+.......++||.++++-|.+.|... +..+.... . +..++..|+.+.
T Consensus 152 VVDiG~~~t~v~PV~--dG~--~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c 217 (375)
T PTZ00452 152 VVDSGEGVTHCVPVF--EGH--QIPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLC 217 (375)
T ss_pred eecCCCCcceEEEEE--CCE--EeccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhc
Confidence 999999999887664 552 233333335799999999887776431 11111110 0 112334444433
Q ss_pred CCC----------------cceeeeccccCCcceEEecchHhH---HHHHHHHH-----HhHHHHHHHHHHHccCC--cc
Q psy7639 847 SST----------------EASIEIDALYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDAKLD--KS 900 (2568)
Q Consensus 847 ~~~----------------~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~l~-----~~i~~~i~~~L~~a~~~--~~ 900 (2568)
.-. ...+. |.+|.. +.+..+.| |-|++|-+ ..+.+.+.+++..+..+ ..
T Consensus 218 ~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~~--i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~ 292 (375)
T PTZ00452 218 YTALDPQDEKRIYKESNSQDSPYK---LPDGNI--LTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQE 292 (375)
T ss_pred cccCcHHHHHHHhhccCCcCceEE---CCCCCE--EEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHH
Confidence 211 01111 334433 44555555 23344432 23456666777665432 22
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCc-------cccccCCchhHHHhhHHHHHHH
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~-------~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
=...|+|+||+|.+|.+.++|+..+... .+..+.++..++=+|++++|..
T Consensus 293 L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 293 LCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred hhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 2678999999999999999998776221 1223345556777888888853
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.6e-05 Score=96.28 Aligned_cols=174 Identities=17% Similarity=0.294 Sum_probs=96.6
Q ss_pred CeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHH
Q psy7639 738 NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 817 (2568)
Q Consensus 738 ~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~ 817 (2568)
..+.+++||.||.+.+... ..+...++|+|+||+|+|++++.- + .-.+....+...+|-..+-+.+.+.+.. ..
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~--~~~~~~~lVVDIGG~T~Dv~~v~~--~-~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-~~ 214 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD--LDEDESVLVVDIGGRTTDVAVVRG--G-LPDISKCSGTPEIGVSDLYDAIAQALRS-AG 214 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT--S-TTSEEEEEEE-SS-EEEEEEEG--G-G--EEEEEEETTSSTHHHHHHHHHHTT---S
T ss_pred eeEEEEcccHHHHHHHHHh--hcccCcEEEEEcCCCeEEeeeecC--C-ccccchhccCCchhHHHHHHHHHHHHHH-hc
Confidence 4578899999999987654 444567999999999999999862 2 2223344555678888777777666554 11
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCcceeeeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccC
Q psy7639 818 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKL 897 (2568)
Q Consensus 818 ~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~ 897 (2568)
.. .+.....++. +. .. ....+. ..... .=..+++.+.++..++++.+.|.+.+.+
T Consensus 215 ----~~--~s~~~~~~ii------~~-~~--~~~~~~--~~i~~-----~~~~~~v~~~i~~~~~~l~~~i~~~~~~--- 269 (318)
T PF06406_consen 215 ----ID--TSELQIDDII------RN-RK--DKGYLR--QVIND-----EDVIDDVSEVIEEAVEELINRILRELGD--- 269 (318)
T ss_dssp ----BH--HHHHHHHHHH------HT-TT---HHHHH--HHSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ----CC--CcHHHHHHHH------Hh-hh--ccceec--ccccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 00 0000111111 00 00 000000 00000 0012344445555555555555554432
Q ss_pred CccCcCeEEEEcCCCCcHHHHHHHHHHhC--CccccccCCchhHHHhhHH
Q psy7639 898 DKSAIHDVVLVGGSTRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAA 945 (2568)
Q Consensus 898 ~~~~I~~ViLvGGssriP~v~~~l~~~f~--~~~v~~~~npdeaVA~GAA 945 (2568)
..+++.|+||||++. .+.+.|++.|+ ...+...-||..|-|+|-+
T Consensus 270 -~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 -FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred -hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 346899999999985 47888888885 3566778899999999954
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=89.91 Aligned_cols=263 Identities=17% Similarity=0.260 Sum_probs=157.6
Q ss_pred eecHHHHHHHHHHHHHHHHHHHhCC--------------CCCeEEEEecCCCCHHHHHHHHHHHHHc--------CCc--
Q psy7639 110 TFAPEEISSMVLTKMKETAEAYLGH--------------SVRDAVITVPAYFNDAQRQATKDAGAIA--------GLN-- 165 (2568)
Q Consensus 110 ~~speel~a~~L~~l~~~ae~~l~~--------------~~~~~VITVPa~f~~~qr~al~~Aa~~A--------Gl~-- 165 (2568)
.||-..++.++|..+..+|-.+++. ....+++|||+--...+|+.++++++.| |.+
T Consensus 416 ~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~ 495 (1002)
T PF07520_consen 416 HYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPW 495 (1002)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5788899999999999988776653 2457999999999999999999888777 421
Q ss_pred -------------------EEEEecchhHHHHhhccc------------------c---c------cCCCceEEEEEeCC
Q psy7639 166 -------------------VMRIVNEPTAAALAYGLD------------------K---N------LKGERNVLIFDLGG 199 (2568)
Q Consensus 166 -------------------~~~li~Ep~AAAl~y~~~------------------~---~------~~~~~~vlV~D~Gg 199 (2568)
+..=-+|.||.-+-|..+ + . ..+.-.|.-+|+||
T Consensus 496 ~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGG 575 (1002)
T PF07520_consen 496 DDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGG 575 (1002)
T ss_pred CCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCC
Confidence 111135666654444211 1 0 11123589999999
Q ss_pred cceEEEEeeec----CCcEEEEEe---ecccccccccchHHHHH-HHHHHHHHhh----------------hcccCCCCH
Q psy7639 200 GTFDVSILSID----EGALFEVRS---TAGDTHLGGEDFDNRLV-SHLAEEFKRK----------------YKKDMSVNP 255 (2568)
Q Consensus 200 gT~Dvsv~~~~----~~~~~~v~~---~~gd~~lGG~~~D~~l~-~~l~~~~~~~----------------~~~~~~~~~ 255 (2568)
||||+.|-.+. .|....+.- ..-+-.+.|+|+=..++ .++...+.+. +|.+-....
T Consensus 576 GTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~~ 655 (1002)
T PF07520_consen 576 GTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSDQ 655 (1002)
T ss_pred CcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhHH
Confidence 99999997765 332222221 11125678888855544 3444333322 111100000
Q ss_pred -H-------------HHHHHHHHHHHHHH-------------hcC-CCCceEE------EEee------eccCcceEEee
Q psy7639 256 -R-------------ALRRLRTAAERAKR-------------TLS-SSTEASI------EIDA------LYDGIDFYTKI 295 (2568)
Q Consensus 256 -~-------------~~~~L~~~aE~aK~-------------~LS-~~~~~~i------~i~~------l~~~~d~~~~i 295 (2568)
+ ...+++.++|..=. .|. ..+...+ .+.. -++-.++.+.|
T Consensus 656 ~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l~i 735 (1002)
T PF07520_consen 656 DRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPLEI 735 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceEEE
Confidence 0 01123334444221 111 0000000 0000 01113556789
Q ss_pred cHHHHHHHHh---hhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcc---------------
Q psy7639 296 SRARFEELCS---DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL--------------- 357 (2568)
Q Consensus 296 tR~efe~l~~---~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v--------------- 357 (2568)
+..++...+. -.+..++..+-+++...+ -|-++|+|--||+|.||..+.+..+ .++
T Consensus 736 ~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~~Y~tg~WY 809 (1002)
T PF07520_consen 736 DLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLHGYRTGNWY 809 (1002)
T ss_pred cHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecCCeeecccc
Confidence 9999988775 566666777777776654 6789999999999999999999883 221
Q ss_pred -----cccCCchhHHHhhHHHHHHHH
Q psy7639 358 -----NLSINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 358 -----~~~~npdeaVA~GAa~~aa~l 378 (2568)
..--||...||.||.+-+...
T Consensus 810 PF~~~~rI~dPKTTaaVGAmLc~La~ 835 (1002)
T PF07520_consen 810 PFNDQGRIDDPKTTAAVGAMLCLLAE 835 (1002)
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhc
Confidence 122499999999997765443
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=87.20 Aligned_cols=173 Identities=21% Similarity=0.258 Sum_probs=103.9
Q ss_pred EEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhh
Q psy7639 1537 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 1616 (2568)
Q Consensus 1537 ~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 1616 (2568)
..++|-+|-+.....-.+. .+ .|+|+||..+-+..++ +|.+.+.. .....-.|+-.|.+.+++.|
T Consensus 73 ~~~~ei~~~~~g~~~~~~~--~~--~vidiGgqd~k~i~~~--~g~~~~~~-~n~~ca~Gtg~f~e~~a~~l-------- 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE--AR--GVIDIGGQDSKVIKID--DGKVDDFT-MNDKCAAGTGRFLEVTARRL-------- 137 (248)
T ss_pred CceEEhhHHHHHHHHHCCC--CC--EEEEecCCeeEEEEEC--CCcEeeee-ecCcccccccHHHHHHHHHc--------
Confidence 3678888866544332221 12 6999999988888887 67443333 33434578888888888773
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccc-cCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC
Q psy7639 1617 KKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL-YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDK 1695 (2568)
Q Consensus 1617 ~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~-~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~ 1695 (2568)
+.+ ...+..+ +.+.+....-.....+-.+.. ... +..-.+ .++++..+++.+...+.+.+...+
T Consensus 138 ~~~----~~e~~~~---~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~---~~di~~~~~~~va~~i~~~~~~~~--- 202 (248)
T TIGR00241 138 GVS----VEELGSL---AEKADRKAKISSMCTVFAESELISL--LAAGVK---KEDILAGVYESIAERVAEMLQRLK--- 202 (248)
T ss_pred CCC----HHHHHHH---HhcCCCCCCcCCEeEEEechhHHHH--HHCCCC---HHHHHHHHHHHHHHHHHHHHhhcC---
Confidence 222 2222221 111111110111111111100 000 000122 356777777777777777665543
Q ss_pred cccc-EEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHH
Q psy7639 1696 SAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 1742 (2568)
Q Consensus 1696 ~~Id-~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai 1742 (2568)
++ .|+|.||.+++|.+.+.+.+.+ +..+..+.+|..+.|+|||+
T Consensus 203 --~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 203 --IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred --CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 34 6999999999999999999999 67788888998999999996
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00059 Score=83.34 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=99.9
Q ss_pred eecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhh
Q psy7639 741 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 820 (2568)
Q Consensus 741 ~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~ 820 (2568)
..++|-+|-+....+.. +. .=.|+|+||..+-+..++ +|..... ........|+-.|.+.+.+.|--.
T Consensus 73 ~~~~ei~~~~~g~~~~~--~~--~~~vidiGgqd~k~i~~~--~g~~~~~-~~n~~ca~Gtg~f~e~~a~~l~~~----- 140 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA--PE--ARGVIDIGGQDSKVIKID--DGKVDDF-TMNDKCAAGTGRFLEVTARRLGVS----- 140 (248)
T ss_pred CceEEhhHHHHHHHHHC--CC--CCEEEEecCCeeEEEEEC--CCcEeee-eecCcccccccHHHHHHHHHcCCC-----
Confidence 46778877655432221 11 125999999988877776 5632221 223334457777777665544311
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcCC----CCcceeeecc-ccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHc
Q psy7639 821 KKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDA-LYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDA 895 (2568)
Q Consensus 821 ~~~~~~~~~~~~~L~~~~E~aK~~LS~----~~~~~i~i~~-l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a 895 (2568)
.. +++..+..-.. +..+.+..+. +... +.-.. ..++++..+++.+...+.+.+...
T Consensus 141 -------~~-------e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~---~~~di~~~~~~~va~~i~~~~~~~ 201 (248)
T TIGR00241 141 -------VE-------ELGSLAEKADRKAKISSMCTVFAESELISL--LAAGV---KKEDILAGVYESIAERVAEMLQRL 201 (248)
T ss_pred -------HH-------HHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCC---CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 22222222111 1111111110 0000 00011 235677777777777777766544
Q ss_pred cCCccCcC-eEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHH
Q psy7639 896 KLDKSAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQ 947 (2568)
Q Consensus 896 ~~~~~~I~-~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~ 947 (2568)
+ ++ .|+|.||.++.|++.+.+.+.+ +.++..+.+|..+.|+|||+.
T Consensus 202 ~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 202 K-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred C-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 3 44 7999999999999999999999 677888889999999999973
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0022 Score=75.09 Aligned_cols=192 Identities=22% Similarity=0.261 Sum_probs=105.7
Q ss_pred HHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHH
Q psy7639 1526 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 1605 (2568)
Q Consensus 1526 ~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~ 1605 (2568)
+.-+..|..+..-=-|+++|.+...... ..+..+.|+|+|||++|.|++.- +|.+ .-..-.| .|+-++..|.
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTTP--Gt~~PlaIlDmG~GSTDAsii~~-~g~v-~~iHlAG----AG~mVTmlI~ 174 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTTP--GTDKPLAILDMGGGSTDASIINR-DGEV-TAIHLAG----AGNMVTMLIN 174 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTST--T--SSEEEEEE-SSEEEEEEE-T-TS-E-EEEEEE-----SHHHHHHHHH
T ss_pred HHHHHHCCceEEccccHHHHHhcccCCC--CCCCCeEEEecCCCcccHHHhCC-CCcE-EEEEecC----CchhhHHHHH
Confidence 3345578888888899999988654322 34566899999999999999984 5522 2222222 4777776665
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCe---------eEEE-Ecc------------ccCC--ccee
Q psy7639 1606 SHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE---------ASIE-IDA------------LYDG--IDFY 1661 (2568)
Q Consensus 1606 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~---------~~i~-i~~------------~~~~--~~~~ 1661 (2568)
..| +.+ +. .-+|..|+.--.+-+ ..+. .+. ..++ ..+.
T Consensus 175 sEL--------Gl~----d~------~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~ 236 (332)
T PF08841_consen 175 SEL--------GLE----DR------ELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIP 236 (332)
T ss_dssp HHC--------T-S-----H------HHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEES
T ss_pred Hhh--------CCC----CH------HHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecC
Confidence 442 221 22 245666643211000 0000 000 0011 1122
Q ss_pred eecCHHHHHHHHhHHHHHHH-HHHHHHHHHc--CCCCccccEEEEecCccCChhHHHHHHhhhcCC-------cccccCC
Q psy7639 1662 TKISRARFEELCSDLFRSTL-QPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSIN 1731 (2568)
Q Consensus 1662 ~~itr~~fe~l~~pli~~i~-~~i~~~L~~a--~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~-------~v~~~~n 1731 (2568)
..++-++...+=+..-++.. ...-++|++- .-+..+|+.|+|||||+.=--|-++|.+.+..- .++-.--
T Consensus 237 ~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eG 316 (332)
T PF08841_consen 237 GDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEG 316 (332)
T ss_dssp STS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTST
T ss_pred CCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccC
Confidence 23455555444444433332 3344566544 234468999999999999888888898887432 3444567
Q ss_pred chhhhhccHHHH
Q psy7639 1732 PDEAVAYGAAVQ 1743 (2568)
Q Consensus 1732 P~eAVA~GAai~ 1743 (2568)
|.-|||.|.++-
T Consensus 317 PRNAVATGLvls 328 (332)
T PF08841_consen 317 PRNAVATGLVLS 328 (332)
T ss_dssp TSTHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 999999998754
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=78.39 Aligned_cols=114 Identities=17% Similarity=0.258 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC--CeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCce
Q psy7639 115 EISSMVLTKMKETAEAYLGHSV--RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 191 (2568)
Q Consensus 115 el~a~~L~~l~~~ae~~l~~~~--~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~ 191 (2568)
++..++++|..+. .+...+ --++||-|++=+.+.|+.+.+.+ +...+....|..+|+++|++-|.. +
T Consensus 86 D~~~~~w~~~~~~---~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Grs-------t 155 (426)
T KOG0679|consen 86 DLFEMQWRYAYKN---QLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRS-------T 155 (426)
T ss_pred HHHHHHHHHHHhh---hhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCC-------c
Confidence 5677778877743 333333 35899999998899998887765 555677788999999999877543 5
Q ss_pred EEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHH
Q psy7639 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (2568)
Q Consensus 192 vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~ 242 (2568)
-||+|+|++++.++=+ .+|-++ -.++.. ..+||+.++..+.+.|..+
T Consensus 156 alVvDiGa~~~svsPV--~DG~Vl-qk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 156 ALVVDIGATHTSVSPV--HDGYVL-QKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred eEEEEecCCCceeeee--ecceEe-eeeeEe-cccchHHHHHHHHHHHhhc
Confidence 7999999999988865 345221 112222 6799999999999888765
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0022 Score=77.95 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCeEEEEEcCCCCHHHHHHHHHH-HHHcCCCeeeecchhHHHHHHhccccCCCCCc
Q psy7639 687 EEISSMVLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGER 763 (2568)
Q Consensus 687 eev~a~iL~~L~~~ae~~~~~--~~~~~VITVPa~f~~~qr~al~~A-a~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~ 763 (2568)
=++..++.+|..+. ++.. .-.-++||-|++=+.+.|+.+.+. .+...+....|..+|+++|++-|. .
T Consensus 85 WD~~~~~w~~~~~~---~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr-------s 154 (426)
T KOG0679|consen 85 WDLFEMQWRYAYKN---QLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR-------S 154 (426)
T ss_pred HHHHHHHHHHHHhh---hhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC-------C
Confidence 46677777777642 2333 234589999998888888877665 467788889999999999998753 3
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHH
Q psy7639 764 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 815 (2568)
Q Consensus 764 ~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~ 815 (2568)
+-||+|+|++++.++-+. +|- +--.+.. -..+||+-++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV~--DG~-Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPVH--DGY-VLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeeee--cce-EeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 689999999999887654 562 1112222 36799999999998888765
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=76.62 Aligned_cols=174 Identities=20% Similarity=0.239 Sum_probs=118.6
Q ss_pred HHHHHHHHcCCceEEEEechhHHHHHhhcc-c---cccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChh
Q psy7639 1523 ATKDAGAIAGLNVMRIVNEPTAAALAYGLD-K---NLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598 (2568)
Q Consensus 1523 ~~~~Aa~~AGL~v~~li~EPtAAal~y~~~-~---~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~ 1598 (2568)
...+|+++|||+...+=-|.-|.--+|..- . ......+++|+|+|+-.+-+.++. +| +.+.+.. ..+||+
T Consensus 153 ~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~--~g---k~ly~r~-~~~g~~ 226 (354)
T COG4972 153 SRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ--DG---KILYTRE-VPVGTD 226 (354)
T ss_pred HHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEE--CC---eeeeEee-ccCcHH
Confidence 346789999999988878888876666621 1 111223478999999999999988 77 4555554 448999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHH
Q psy7639 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFR 1678 (2568)
Q Consensus 1599 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~ 1678 (2568)
+++..+.+.+ +.+. ..+|.+|+... +.-+.-.++..|+++
T Consensus 227 Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~---------------------~P~~y~~~vl~~f~~ 266 (354)
T COG4972 227 QLTQEIQRAY--------SLTE-----------EKAEEIKRGGT---------------------LPTDYGSEVLRPFLG 266 (354)
T ss_pred HHHHHHHHHh--------CCCh-----------hHhHHHHhCCC---------------------CCCchhHHHHHHHHH
Confidence 9999887652 2222 25566666542 122334566777777
Q ss_pred HHHHHHHHHHHHc--CCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHH
Q psy7639 1679 STLQPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1679 ~i~~~i~~~L~~a--~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a 1744 (2568)
.+.+-|.+.|+-. .-...+||+++|.||...+-.+.+.|.+.++- +....||-..-+.++...+
T Consensus 267 ~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~--~t~vanPf~~~~~~~~v~k 332 (354)
T COG4972 267 ELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSI--PTEVANPFAYMALNVKVNK 332 (354)
T ss_pred HHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCC--CeEeeCHHHHHhhhhcccc
Confidence 7777777777633 22456799999999999999999999999832 3334577665555555444
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0055 Score=79.91 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHH-HHHcCCCeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcE
Q psy7639 709 VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGAL 787 (2568)
Q Consensus 709 ~~~~VITVPa~f~~~qr~al~~A-a~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~ 787 (2568)
-..+++|-|..+...+|..+.+. .+...+..+.+..++.+++++.+... .+.+|+|+|.+.++|+=+- +|
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~ViD~G~~~t~v~PV~--DG-- 176 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-----ETGLVIDSGDSVTHVIPVV--DG-- 176 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-----CceEEEEcCCCceeeEeee--cc--
Confidence 34689999999999999877654 46667777888888888877765432 4789999999999887553 45
Q ss_pred EEEEeeccCCCCccchHHHHHHHHHHHH
Q psy7639 788 FEVRSTAGDTHLGGEDFDNRLVSHLAEE 815 (2568)
Q Consensus 788 ~~v~~~~gd~~lGG~~~D~~l~~~l~~~ 815 (2568)
+.+.....-..+||++++.-|.+.|...
T Consensus 177 ~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 177 IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 2333334446799999999888877763
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0092 Score=72.03 Aligned_cols=172 Identities=19% Similarity=0.258 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCCCeeeecchhHHHHHHhccc-cCC---CCCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCcc
Q psy7639 726 QATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNL---KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801 (2568)
Q Consensus 726 ~al~~Aa~~AGl~~l~li~Ep~AAAl~y~~~-~~~---~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG 801 (2568)
....+|.+.|||....+=-|.-|.--+|... ... .....++|+|+|+..+.++++. +|. .+. ..+..+||
T Consensus 152 ~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~--~gk---~ly-~r~~~~g~ 225 (354)
T COG4972 152 ESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ--DGK---ILY-TREVPVGT 225 (354)
T ss_pred HHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEE--CCe---eee-EeeccCcH
Confidence 3446889999999888877888776666421 111 1123378999999999999987 342 222 23467899
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCcceeeeccccCCcceEEecchHhHHHHHHHHH
Q psy7639 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 881 (2568)
Q Consensus 802 ~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~ 881 (2568)
+++.+.+...+.-.+ ..++.+|......+ +--.+...|++
T Consensus 226 ~Qlt~~i~r~~~L~~-------------------~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAYSLTE-------------------EKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHhCCCh-------------------hHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 998887655432111 14556665543322 11235567777
Q ss_pred HhHHHHHHHHHHH--ccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHH
Q psy7639 882 RSTLQPVEKALQD--AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 945 (2568)
Q Consensus 882 ~~i~~~i~~~L~~--a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAA 945 (2568)
+.+.+.|.+.|+- +.-...+|++++|.||++++-.+.+.+.+.++ .+ ....||-...+.++.
T Consensus 266 ~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~-~~-t~vanPf~~~~~~~~ 329 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS-IP-TEVANPFAYMALNVK 329 (354)
T ss_pred HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC-CC-eEeeCHHHHHhhhhc
Confidence 7777777777762 22245579999999999999999999999983 22 223466544444433
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.008 Score=78.41 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=71.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEE
Q psy7639 137 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 215 (2568)
Q Consensus 137 ~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~ 215 (2568)
..+++|-|..+....|..+.+.+ +...+..+.+..++.+++.+.+... .+.+|+|+|.+.++++=+- +| +
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~ViD~G~~~t~v~PV~--DG--~ 177 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-----ETGLVIDSGDSVTHVIPVV--DG--I 177 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-----CceEEEEcCCCceeeEeee--cc--c
Confidence 46899999999999998887654 5556777777888777776665432 5789999999999988552 34 1
Q ss_pred EEEeecccccccccchHHHHHHHHHHH
Q psy7639 216 EVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (2568)
Q Consensus 216 ~v~~~~gd~~lGG~~~D~~l~~~l~~~ 242 (2568)
.+.....-..+||++++.-|.+.|.+.
T Consensus 178 ~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 178 VLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred cccccceeeecCcHHHHHHHHHHHhhc
Confidence 233333336799999999888887763
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=68.31 Aligned_cols=190 Identities=23% Similarity=0.245 Sum_probs=97.5
Q ss_pred HHcCCCeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHH
Q psy7639 733 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 812 (2568)
Q Consensus 733 ~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l 812 (2568)
+..|.++..-=-|+.+|++...... ..+..+.++|+||||+|.|++.-. | .+.....+| .|+.+...|...
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP--Gt~~PlaIlDmG~GSTDAsii~~~-g-~v~~iHlAG----AG~mVTmlI~sE- 176 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP--GTDKPLAILDMGGGSTDASIINRD-G-EVTAIHLAG----AGNMVTMLINSE- 176 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST--T--SSEEEEEE-SSEEEEEEE-TT-S--EEEEEEE-----SHHHHHHHHHHH-
T ss_pred HHHCCceEEccccHHHHHhcccCCC--CCCCCeEEEecCCCcccHHHhCCC-C-cEEEEEecC----CchhhHHHHHHh-
Confidence 4457777777789999988765432 234568999999999999999743 4 233333333 255454433221
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCcc--eee--------ecc------------ccCC--cceEEec
Q psy7639 813 AEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEA--SIE--------IDA------------LYDG--IDFYTKI 868 (2568)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~--~i~--------i~~------------l~~~--~d~~~~i 868 (2568)
.+. ++ +.-||..|+---..-+. .+. ++. +.++ ..+...+
T Consensus 177 -------LGl----~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 177 -------LGL----ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp -------CT-----S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred -------hCC----CC------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 111 11 12456666541110000 000 000 0011 0111122
Q ss_pred chHhHHHHHHHHHHhH-HHHHHHHHHHccC--CccCcCeEEEEcCCCCcHHHHHHHHHHhCCc-------cccccCCchh
Q psy7639 869 SRARFEELCSDLFRST-LQPVEKALQDAKL--DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDE 938 (2568)
Q Consensus 869 tr~efe~l~~~l~~~i-~~~i~~~L~~a~~--~~~~I~~ViLvGGssriP~v~~~l~~~f~~~-------~v~~~~npde 938 (2568)
+-+++..+=...=+++ ..-..++|++... +..+|+.|+|||||+.=--|-+++.+.+..- .+.-..-|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3333332222222221 1223455554432 3356999999999999888888998888433 4455668999
Q ss_pred HHHhhHHHHH
Q psy7639 939 AVAYGAAVQA 948 (2568)
Q Consensus 939 aVA~GAAl~a 948 (2568)
|||.|.++.-
T Consensus 320 AVATGLvlsy 329 (332)
T PF08841_consen 320 AVATGLVLSY 329 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988743
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.06 Score=65.97 Aligned_cols=219 Identities=15% Similarity=0.161 Sum_probs=114.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhcccccc
Q psy7639 1477 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK 1556 (2568)
Q Consensus 1477 ~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~ 1556 (2568)
.....|.+....+|+.+.+.+ |....++-..|=..|. |..+.. + ...++|-+|.|.....-.+
T Consensus 61 ~tg~~~~~~a~~~l~~~l~~~----g~~~~~v~~~~~TGyG---r~~~~~----a----~~~v~EItaha~Ga~~~~p-- 123 (293)
T TIGR03192 61 RTGNNSPDSAKNALQGIMDKI----GMKLEDINYVVGTGYG---RVNVPF----A----HKAITEIACHARGANYMGG-- 123 (293)
T ss_pred cCCCCHHHHHHHHHHHHHHHc----CCcccceEEEEEECcc---hhhcch----h----hcceeeHHHHHHHHHHhcC--
Confidence 445567777777777776655 3222222211113443 333221 1 2468999998775433221
Q ss_pred CcceEEEEEeCCcceEEEEEEe-cCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q psy7639 1557 GERNVLIFDLGGGTFDVSILSI-DEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAE 1635 (2568)
Q Consensus 1557 ~~~~vlV~D~GGGT~Dvsi~~~-~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E 1635 (2568)
+..=-|+|+||--.- ++.+ ++|.+.+...... +-.|.-.|=+.+++.| +.+ ...+..+ +.
T Consensus 124 -p~v~tIIDIGGQDsK--~I~~d~~G~v~dF~MNdk-CAAGTGrFLE~~A~~L--------gi~----leel~~~---a~ 184 (293)
T TIGR03192 124 -NAVRTILDMGGQDCK--AIHCDEKGKVTNFLMNDK-CAAGTGRGMEVISDLM--------QIP----IADLGPR---SF 184 (293)
T ss_pred -CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCc-ccccccHHHHHHHHHc--------CCC----HHHHHHH---HH
Confidence 112389999996544 4444 3675544443333 3345333333354442 222 2333322 22
Q ss_pred Hhh-c--ccCCCCeeEEE---EccccCCcceeeecCHHHH-HHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCcc
Q psy7639 1636 RAK-R--TLSSSTEASIE---IDALYDGIDFYTKISRARF-EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 1708 (2568)
Q Consensus 1636 ~aK-~--~Ls~~~~~~i~---i~~~~~~~~~~~~itr~~f-e~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGss 1708 (2568)
+++ . .+|+....-.. +.....| .+++++ --+|..+.+++. ..+++.++. +.|+|.||.+
T Consensus 185 ~~~~~p~~Iss~CtVFAeSevi~l~~~G------~~~edI~aGl~~sia~rv~----~~~~~~~i~----~~v~~~GGva 250 (293)
T TIGR03192 185 DVETEPEAVSSICVVFAKSEALGLLKAG------YTKNMVIAAYCQAMAERVV----SLLERIGVE----EGFFITGGIA 250 (293)
T ss_pred hcCCCCCCcCCcceEeccHhHHHHHHCC------CCHHHHHHHHHHHHHHHHH----HHhcccCCC----CCEEEECccc
Confidence 222 1 23332221111 0011122 344433 244444545443 333333322 2499999999
Q ss_pred CChhHHHHHHhhhcCCccc-ccCCchhhhhccHHHHHHH
Q psy7639 1709 RIPKVQSLLQNFFCGKSLN-LSINPDEAVAYGAAVQAAI 1746 (2568)
Q Consensus 1709 r~P~V~~~I~~~f~~~~v~-~~~nP~eAVA~GAai~a~~ 1746 (2568)
+.|.+++.+++.++ ..+. .+.+|..+-|+|||++|.-
T Consensus 251 ~N~~l~~al~~~Lg-~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 251 KNPGVVKRIERILG-IKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred ccHHHHHHHHHHhC-CCceeCCCCccHHHHHHHHHHHHH
Confidence 99999999999994 4454 5678999999999999853
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0027 Score=81.03 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=98.1
Q ss_pred cceEEEEecCCCCHHHHHHHHHHHHH------------cCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceE
Q psy7639 1505 VRDAVITVPAYFNDAQRQATKDAGAI------------AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 1572 (2568)
Q Consensus 1505 ~~~~ViTVPa~f~~~qR~~~~~Aa~~------------AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~D 1572 (2568)
..-.+||.++..- +-+++|.+. ||+++..++. |-|++.+...+ +.+..++++|+||||++
T Consensus 88 ~~ahIITg~~~~~----~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 88 SGAVIITGETARK----ENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTAN 159 (475)
T ss_pred ccEEEEEechhHH----HHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCceE
Confidence 4457888887654 445555555 7777777766 99988876532 45677999999999999
Q ss_pred EEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEc
Q psy7639 1573 VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 1652 (2568)
Q Consensus 1573 vsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~ 1652 (2568)
++++. +| ++..+..- ..||+.++.. -+. .-...+|. .+++.+.+ -..+
T Consensus 160 iaVf~--~G---~l~~T~~l-~vGG~~IT~D-~~~----------~i~yis~~-~~~l~~~~---~~~~----------- 207 (475)
T PRK10719 160 YALFD--AG---KVIDTACL-NVGGRLIETD-SQG----------RVTYISPP-GQMILDEL---GLAI----------- 207 (475)
T ss_pred EEEEE--CC---EEEEEEEE-ecccceEEEC-CCC----------CEEEEChH-HHHHHHHc---CCCc-----------
Confidence 99999 78 55555554 4788876643 110 00011222 22222221 1111
Q ss_pred cccCCcceeeecCHHHHHHHHhHHHHHHHHHHH-------HHHHHc-CCC-CccccEEEEecCccCCh
Q psy7639 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVE-------KALQDA-KLD-KSAIHDVVLVGGSTRIP 1711 (2568)
Q Consensus 1653 ~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~-------~~L~~a-~~~-~~~Id~ViLVGGssr~P 1711 (2568)
..|. .++.+++..+|+-..+-+.+.+. +.|-.. .++ ...++.|.+.||-+.+-
T Consensus 208 --~~G~----~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~i 269 (475)
T PRK10719 208 --TDGR----SLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDCI 269 (475)
T ss_pred --cccc----cCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhhe
Confidence 0111 47778888888776666666554 122111 222 36789999999977664
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=72.58 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=110.8
Q ss_pred ccccccccccccCChhhhhcccccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccc-----e
Q psy7639 1433 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVR-----D 1507 (2568)
Q Consensus 1433 v~~~k~~ig~~~~d~~~~~~~k~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~-----~ 1507 (2568)
+...||.+|-...+.. ||+++.+--++.+.|. +..++.+++++.+-+-+.-..++.|..+.. .
T Consensus 162 v~c~kr~~~ee~n~i~--------~y~l~~Pir~G~fNv~----~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~ 229 (618)
T KOG0797|consen 162 VKCRKRIFGEEANKIS--------PYCLYHPIRRGHFNVS----PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYH 229 (618)
T ss_pred HHHHHHHhhhhhhcCC--------cceeecccccceeccC----CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhccee
Confidence 4455666665554432 6666665444434332 456788999988877777666777776644 5
Q ss_pred EEEEecCCCCHHH-HHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEE
Q psy7639 1508 AVITVPAYFNDAQ-RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEV 1586 (2568)
Q Consensus 1508 ~ViTVPa~f~~~q-R~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev 1586 (2568)
+|+-||-.|.... +++++-.....||....++-|..||.+..|.. .-.|+|+|.-++.|+.++ +|.. +
T Consensus 230 aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls-------s~CVVdiGAQkTsIaCVE--dGvs--~ 298 (618)
T KOG0797|consen 230 AVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS-------SACVVDIGAQKTSIACVE--DGVS--L 298 (618)
T ss_pred EEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc-------ceeEEEccCcceeEEEee--cCcc--c
Confidence 9999999998766 67777788889999999999999998876653 248999999999999998 7732 2
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q psy7639 1587 RSTAGDTHLGGEDFDNRLVSHLA 1609 (2568)
Q Consensus 1587 ~~~~gd~~lGG~d~D~~l~~~l~ 1609 (2568)
..+.-.-..||+|+++.++-.+.
T Consensus 299 ~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 299 PNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred cCceEEeccCCchHHHHHHHHHH
Confidence 23333334699999999976654
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.021 Score=71.71 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=105.6
Q ss_pred eehhhhhhCCCCCChhHhhccccCCeEEEeCCCCCeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCC-----e
Q psy7639 637 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVR-----D 711 (2568)
Q Consensus 637 i~~~KrllG~~~~d~~v~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~speev~a~iL~~L~~~ae~~~~~~~~-----~ 711 (2568)
+-+-||.+|..+.+ .-||.+...-.+..+.|. ...+|..++++.+-+-+.-...+.+..+++ .
T Consensus 162 v~c~kr~~~ee~n~--------i~~y~l~~Pir~G~fNv~----~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~ 229 (618)
T KOG0797|consen 162 VKCRKRIFGEEANK--------ISPYCLYHPIRRGHFNVS----PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYH 229 (618)
T ss_pred HHHHHHHhhhhhhc--------CCcceeecccccceeccC----CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhccee
Confidence 34556666654433 225555443334444442 345788888877666555555666665544 6
Q ss_pred EEEEEcCCCCHHHHHHHHH-HHHHcCCCeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcEEEE
Q psy7639 712 AVITVPAYFNDAQRQATKD-AGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEV 790 (2568)
Q Consensus 712 ~VITVPa~f~~~qr~al~~-Aa~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v 790 (2568)
+|+-||-.|.....+.+.. -....||+...++.|..||.+..|+. .-+|+|+|+-+|.++.++ +|. .+
T Consensus 230 aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls-------s~CVVdiGAQkTsIaCVE--dGv--s~ 298 (618)
T KOG0797|consen 230 AVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS-------SACVVDIGAQKTSIACVE--DGV--SL 298 (618)
T ss_pred EEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc-------ceeEEEccCcceeEEEee--cCc--cc
Confidence 8999999999888665554 45778999999999999998877654 468999999999887775 552 23
Q ss_pred EeeccCCCCccchHHHHHHHHHHH
Q psy7639 791 RSTAGDTHLGGEDFDNRLVSHLAE 814 (2568)
Q Consensus 791 ~~~~gd~~lGG~~~D~~l~~~l~~ 814 (2568)
..+.--...||.|+++.++-.+..
T Consensus 299 ~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 299 PNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred cCceEEeccCCchHHHHHHHHHHh
Confidence 333333567999999998876654
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.099 Score=63.25 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=109.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhCC---ccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccc
Q psy7639 1479 TFAPEEISSMVLTKMKETAEAYLGH---SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNL 1555 (2568)
Q Consensus 1479 ~~~p~ev~a~iL~~lk~~ae~~l~~---~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~ 1555 (2568)
...|.+....+|+.+.+.+ |. .+..++. ..|. |.. ..+ + ..+.|-+|.|....+-.+
T Consensus 37 ~~~~~~~~~~~l~~~~~~~----g~~~~~i~~i~~---TGYG---R~~-~~a----~----~~vtEIt~ha~GA~~~~p- 96 (262)
T TIGR02261 37 QRDPFKLAEDAYDDLLEEA----GLAAADVAYCAT---TGEG---ESL-AFH----T----GHFYSMTTHARGAIYLNP- 96 (262)
T ss_pred CCCHHHHHHHHHHHHHHHc----CCChhheEEEEE---ECCc---hhh-hhh----c----CCeeEEeHHHHHHHHHCC-
Confidence 4667777766776666544 32 2222222 4553 332 111 1 135788887765443222
Q ss_pred cCcceEEEEEeCCcceEEEEEEe-cCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q psy7639 1556 KGERNVLIFDLGGGTFDVSILSI-DEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAA 1634 (2568)
Q Consensus 1556 ~~~~~vlV~D~GGGT~Dvsi~~~-~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 1634 (2568)
..=-|+|+||--+- ++.+ ++|.+.....-.. .-.|.-.|=+.+++.| +.+ ...+..+ +
T Consensus 97 ---~~~tIiDIGGQD~K--~I~~~~~G~v~~f~MNdk-CAAGTG~FLe~~A~~L--------~i~----leel~~~---a 155 (262)
T TIGR02261 97 ---EARAVLDIGALHGR--AIRMDERGKVEAYKMTSQ-CASGSGQFLENIARYL--------GIA----QDEIGSL---S 155 (262)
T ss_pred ---CCCEEEEeCCCceE--EEEEcCCCcEeeEEecCc-ccccccHHHHHHHHHh--------CCC----HHHHHHH---H
Confidence 12289999997655 4555 3665544443333 2345334433444432 222 2333322 3
Q ss_pred HHhhcc--cCCCCeeEEE---EccccCCcceeeecCHHHHH-HHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCcc
Q psy7639 1635 ERAKRT--LSSSTEASIE---IDALYDGIDFYTKISRARFE-ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 1708 (2568)
Q Consensus 1635 E~aK~~--Ls~~~~~~i~---i~~~~~~~~~~~~itr~~fe-~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGss 1708 (2568)
.+++.. +|+....-.. +.....| .+|+++- -++..+.+++. ..++..+... +.|+|.||.+
T Consensus 156 ~~~~~~~~iss~CtVFaeSevi~~~~~G------~~~edI~aGl~~sia~r~~----~~~~~~~~~~---~~v~~~GGva 222 (262)
T TIGR02261 156 QQADNPEKVSGICAVLAETDVINMVSRG------ISAPNILKGIHESMADRLA----KLLKSLGALD---GTVLCTGGLA 222 (262)
T ss_pred hcCCCCCCcCCCceEEchhhHHHHHHCC------CCHHHHHHHHHHHHHHHHH----HHHhccCCCC---CcEEEECccc
Confidence 333322 3332221111 0011112 3444332 34444444443 3444332211 2499999999
Q ss_pred CChhHHHHHHhhhcCCc----ccccCCchhhhhccHHHHH
Q psy7639 1709 RIPKVQSLLQNFFCGKS----LNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1709 r~P~V~~~I~~~f~~~~----v~~~~nP~eAVA~GAai~a 1744 (2568)
+.+.+++.+++.+++.. +..+.+|+.+-|+|||++|
T Consensus 223 ~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 223 LDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred ccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 99999999999995433 4456688899999999864
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.066 Score=68.00 Aligned_cols=176 Identities=22% Similarity=0.215 Sum_probs=94.9
Q ss_pred EEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhh
Q psy7639 1537 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 1616 (2568)
Q Consensus 1537 ~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 1616 (2568)
.+++|-+|.+.....-.+ ..+..-.|+|+|| -|.-++.+.+|.+.... -.+-.-.|+-.|=+.+++.|
T Consensus 220 ~iv~EItaha~GA~~L~p-~~~~v~TIIDIGG--QDsK~I~l~~G~v~dF~-MNdkCAAGTGrFLE~~A~~L-------- 287 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLAD-KQEGPATVIDIGG--MDNKAISVWDGIPDNFT-MGGICAGASGRFLEMTAKRL-------- 287 (404)
T ss_pred ceEEEEhhHHHHHHHhcc-cCCCCcEEEEeCC--CceEEEEEcCCceeeEE-EcCcccccCcHHHHHHHHHh--------
Confidence 358898886543222111 1112359999999 56666777677543333 23333345444544555543
Q ss_pred cCCCCCCHHHHHHHHHHHHHhh---cccCCCCeeEEE---EccccCCcceeeecCHHHHHHHHhHHHHHHHHHHH-HHHH
Q psy7639 1617 KKDMSVNPRALRRLRTAAERAK---RTLSSSTEASIE---IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVE-KALQ 1689 (2568)
Q Consensus 1617 ~~~~~~~~~~~~~L~~~~E~aK---~~Ls~~~~~~i~---i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~-~~L~ 1689 (2568)
+.+ ...+ -+.+.+++ ..+++....--. +.....| .+++ +++.-+...+..-+. .+++
T Consensus 288 gi~----ieEl---~~lA~~~~~~pv~IsS~CtVFaeSevIsll~~G------~~~e---DIaAGl~~SIa~rv~~~l~~ 351 (404)
T TIGR03286 288 GVD----ITEL---GKLALKGMPEKVRMNSYCIVFGIQDLVTALAEG------ASPE---DVAAAACHSVAEQVYEQQLQ 351 (404)
T ss_pred CCC----HHHH---HHHHHhCCCCCCCccCcccccccHhHHHHHHCC------CCHH---HHHHHHHHHHHHHHHHHHhh
Confidence 222 2222 22333332 223322221000 0000011 3333 333333333333333 2333
Q ss_pred HcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHH
Q psy7639 1690 DAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745 (2568)
Q Consensus 1690 ~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~ 1745 (2568)
..++ -+.|+++||.++.+.+.+.+++.+ +..+.++.+|..+-|+|||++|.
T Consensus 352 ~~~i----~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 352 EIDV----REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cCCC----CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 3322 234999999999999999999999 56788899999999999999973
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.15 Score=63.31 Aligned_cols=176 Identities=19% Similarity=0.277 Sum_probs=99.3
Q ss_pred ceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHH
Q psy7639 1534 NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 1613 (2568)
Q Consensus 1534 ~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~ 1613 (2568)
..-..++|-+|-+..-..-.+ .-+ .|+|+||- |.=++.+.+|.+....- .+-+-.|.-.|=+.+++.
T Consensus 208 ~aD~~~~Ei~ah~kgA~~f~p--~~d--tIiDIGGQ--D~K~i~i~dG~v~df~m-N~~CAAGtGrFLE~~A~~------ 274 (396)
T COG1924 208 GADKVVVEISAHAKGARYFAP--DVD--TVIDIGGQ--DSKVIKLEDGKVDDFTM-NDKCAAGTGRFLEVIARR------ 274 (396)
T ss_pred cCCcceeeeehhHHHHHHhCC--CCc--EEEEecCc--ceeEEEEeCCeeeeeEe-ccccccccchHHHHHHHH------
Confidence 344467777775443221111 111 89999996 55566666885433332 222334433333334333
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEcc-----ccCCcceeeecCHHHHHHHHhHHHHHHHHHHHH-H
Q psy7639 1614 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDA-----LYDGIDFYTKISRARFEELCSDLFRSTLQPVEK-A 1687 (2568)
Q Consensus 1614 ~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~-----~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~-~ 1687 (2568)
++.++ ..+-+.+++++..-.-+..+.+-... ...| ...|+++.-+...+..-+-. +
T Consensus 275 --Lgv~v-------~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G---------~~~EdI~AGl~~Sv~~~v~~~~ 336 (396)
T COG1924 275 --LGVDV-------EELGKLALKATPPVKINSRCAVFAESEVISALAEG---------ASPEDILAGLAYSVAENVAEKV 336 (396)
T ss_pred --hCCCH-------HHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHHHH
Confidence 33332 23334455555422211122211110 0011 12455666665555544443 5
Q ss_pred HHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHH
Q psy7639 1688 LQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745 (2568)
Q Consensus 1688 L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~ 1745 (2568)
++.-.+.+ . |+|+||.+....+.+.+.+.+ +.++.++.+|..+=|+|||+++.
T Consensus 337 ~~~~~i~~--~--iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 337 IKRVDIEE--P--IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred hhccCCCC--C--EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHh
Confidence 55443322 1 999999999999999999999 68899999999999999999984
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.12 Score=64.84 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=95.1
Q ss_pred EEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEec-CCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhh
Q psy7639 1537 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRK 1615 (2568)
Q Consensus 1537 ~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~-~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~ 1615 (2568)
.+++|-+|-|....+-.+ ..=.|+|+||--+- ++.++ +|.+........ +-.|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~P----~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDK-CAAGTGrFLE~mA~~L------- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP----GTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDR-CAAGCGRYLGYIADEM------- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHCC----CCCEEEEeCCCceE--EEEEcCCCcEeeeeecCc-ccccchHHHHHHHHHc-------
Confidence 467999998775433322 22389999997665 45554 464443333333 3345444444444442
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEcc-----ccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7639 1616 YKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDA-----LYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQD 1690 (2568)
Q Consensus 1616 ~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~-----~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~ 1690 (2568)
+.+ ...+.. .+.+++....-...+.+--+. ...| .++++ ++.-+...+..-+...+.+
T Consensus 315 -gi~----leEl~~---lA~~a~~pv~ISS~CtVFAESEVIslla~G------~~reD---IaAGL~~SIA~Rv~s~l~r 377 (432)
T TIGR02259 315 -NMG----LHELGP---LAMKSSKPARINSTCTVFAGAELRDRLALG------DKRED---ILAGLHRAIILRAISIISR 377 (432)
T ss_pred -CCC----HHHHHH---HHhcCCCCCCcCCcceEEehHHHHHHHHCC------CCHHH---HHHHHHHHHHHHHHHHHhc
Confidence 232 223332 233333322222222221111 1112 34433 3333333333333333333
Q ss_pred c-CCCCccccEEEEecCccCChhHHHHHHhhhc----CCcccccCCchhhhhccHHHHH
Q psy7639 1691 A-KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC----GKSLNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1691 a-~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~----~~~v~~~~nP~eAVA~GAai~a 1744 (2568)
. ++ -+.|+|.||.++.+.+.+.+++.++ +..+..+.+|..+-|+|||++|
T Consensus 378 ~~~i----~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 378 SGGI----TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred ccCC----CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 3 21 2359999999999999999999995 4567788899999999999875
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.14 Score=63.48 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhHHHHHHH-HHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHH
Q psy7639 872 RFEELCSDLFRSTLQPVEK-ALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 872 efe~l~~~l~~~i~~~i~~-~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
..|+++.-+...+..-+-. +++...+... |+|+||.+....+.+.+++.+ +.++..+.+|...-|+|||++|..
T Consensus 316 ~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~~----iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 316 SPEDILAGLAYSVAENVAEKVIKRVDIEEP----IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCCCC----EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 3567777777666655544 5655443322 999999999999999999999 588999999999999999999864
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.2 Score=57.98 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=39.3
Q ss_pred cCcCeEEEEcCCCCcHHHHHHHHHHhCCc-------------------cccccCCchhHHHhhHHHHHHHHc
Q psy7639 900 SAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------------------SLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 900 ~~I~~ViLvGGssriP~v~~~l~~~f~~~-------------------~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
.+.|-++|+|--||.|.||..+....+-. +...--||...+|.||.+.+..+.
T Consensus 777 y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 777 YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 34678999999999999999998765311 112234899999999988776543
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.14 Score=65.25 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=52.3
Q ss_pred HHHHhhhhhhhHHHHHH-HHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHH
Q psy7639 301 EELCSDLFRSTLQPVEK-ALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 301 e~l~~~l~~~i~~~i~~-~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa 376 (2568)
++++..+...+...+.. +++..++ -+.|+++||.++.+.+.+.+++.+ +.++..+.+|..+.|.|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i----~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDV----REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC----CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 33444444444444432 3443332 235999999999999999999999 67888899999999999999884
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.4 Score=58.14 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCcc----ccccCCchhHHHhhHHHHH
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKS----LNLSINPDEAVAYGAAVQA 948 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~----v~~~~npdeaVA~GAAl~a 948 (2568)
++++.-+...+...+-..++..+.. -+.|+|.||.++.+.+.+.|++.+++.. +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3444445555554444445443211 1359999999999999999999985433 4556688899999999974
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.33 Score=60.07 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=42.7
Q ss_pred CcCeEEEEc-CCCCcHHHHHHHHHHhC--CccccccCCchhHHHhhHHHHHH
Q psy7639 901 AIHDVVLVG-GSTRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAAVQAA 949 (2568)
Q Consensus 901 ~I~~ViLvG-GssriP~v~~~l~~~f~--~~~v~~~~npdeaVA~GAAl~aa 949 (2568)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 79999999999998874 56777788999999999999875
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.5 Score=57.24 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=54.9
Q ss_pred eEEeecHHHHHHHHhhh---hhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcc----------
Q psy7639 291 FYTKISRARFEELCSDL---FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL---------- 357 (2568)
Q Consensus 291 ~~~~itR~efe~l~~~l---~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v---------- 357 (2568)
+-+.|.-.++++.+-.. +......+-+++.- .+-|-++|+|--+|.|.||..+....+ .++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yr 816 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYR 816 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEecccee
Confidence 34566667776655543 44445555555543 346789999999999999999887662 111
Q ss_pred ----------cccCCchhHHHhhHHHHHHHH
Q psy7639 358 ----------NLSINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 358 ----------~~~~npdeaVA~GAa~~aa~l 378 (2568)
..--||...+|.||-+-+..+
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 112489999999997766544
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.18 Score=63.37 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=52.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhC----CCcccccCCchhHHHhhHHHHH
Q psy7639 302 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC----GKSLNLSINPDEAVAYGAAVQA 375 (2568)
Q Consensus 302 ~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~----~~~v~~~~npdeaVA~GAa~~a 375 (2568)
+++..+...+...+...+...+ .--..|+|+||.++.+.+.+.|++.++ +.++..+.+|..+-|+|||++|
T Consensus 358 DIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 358 DILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 4444555555555555554442 113479999999999999999999994 4667789999999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.29 Score=60.56 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=42.9
Q ss_pred CCCeEEEcC-CccchHHHHHHHHHHhC--CCcccccCCchhHHHhhHHHHHH
Q psy7639 328 AIHDVVLVG-GSTRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 328 ~i~~ViLvG-G~sriP~v~~~l~~~f~--~~~v~~~~npdeaVA~GAa~~aa 376 (2568)
.++.|+++| |.++.|.+++.+.+++. +.++..+.||..+.|.|||+.|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 79999999999999873 56778889999999999999875
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.11 Score=66.96 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=68.5
Q ss_pred eecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHHH--------HcCCcEEEEecchhHHHHhhc
Q psy7639 110 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA--------IAGLNVMRIVNEPTAAALAYG 181 (2568)
Q Consensus 110 ~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa~--------~AGl~~~~li~Ep~AAAl~y~ 181 (2568)
.+..+.+-..+-...+..--..-.....-.+||.+...-.+-++.+..+.. .||++...++. |.|++.+..
T Consensus 62 ~ID~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL 140 (475)
T PRK10719 62 EIDEAAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL 140 (475)
T ss_pred cccHHHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh
Confidence 345555544444444332111111233457888887655554444443221 26666666666 888887765
Q ss_pred cccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHH
Q psy7639 182 LDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDN 233 (2568)
Q Consensus 182 ~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~ 233 (2568)
.+ +.+..++++|+||||+++++++ +|. +..+ +...+||+.+..
T Consensus 141 se---Eke~gVa~IDIGgGTT~iaVf~--~G~---l~~T-~~l~vGG~~IT~ 183 (475)
T PRK10719 141 SE---ERNTRVLNIDIGGGTANYALFD--AGK---VIDT-ACLNVGGRLIET 183 (475)
T ss_pred hh---hccCceEEEEeCCCceEEEEEE--CCE---EEEE-EEEecccceEEE
Confidence 32 5677899999999999999996 352 2222 236789988864
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.077 Score=62.59 Aligned_cols=75 Identities=21% Similarity=0.351 Sum_probs=53.7
Q ss_pred HHHHhhhhhhhHHHHHHHHHHcCCC-CCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHH
Q psy7639 301 EELCSDLFRSTLQPVEKALQDAKLD-KSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 301 e~l~~~l~~~i~~~i~~~l~~a~~~-~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ 377 (2568)
.+++.-+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++.+.| +.++... +..++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 4444445555554444444433111 234899999999999999999999999 6777654 4499999999999974
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.31 Score=61.79 Aligned_cols=208 Identities=21% Similarity=0.259 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEe
Q psy7639 118 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 197 (2568)
Q Consensus 118 a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~ 197 (2568)
..+++|+...-... .....-+++|=|..|...-|+.|.+..-.. +++-.+.=.--|.. |+..+ .+=+|+|+
T Consensus 82 e~iw~~if~~~L~~-~Pee~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~qavl--ya~g~-----ttG~VvD~ 152 (372)
T KOG0676|consen 82 EKIWHHLFYSELLV-APEEHPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAIQAVL--YASGR-----TTGLVVDS 152 (372)
T ss_pred HHHHHHHHHHhhcc-CcccCceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHHHHHH--HHcCC-----eeEEEEEc
Confidence 66677776221111 112246999999999999999988764332 33333221222323 44332 25699999
Q ss_pred CCcce-EEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCC-CCHHHHHHHHHHHHHHHHhcCCC
Q psy7639 198 GGGTF-DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMS-VNPRALRRLRTAAERAKRTLSSS 275 (2568)
Q Consensus 198 GggT~-Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~-~~~~~~~~L~~~aE~aK~~LS~~ 275 (2568)
|.|-+ -+-|++ | +.+...-....+||.++++-+...|.+ .+.... ...+. -++.+|+.+..-
T Consensus 153 G~gvt~~vPI~e---G--~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~~e------Iv~diKeklCyv 216 (372)
T KOG0676|consen 153 GDGVTHVVPIYE---G--YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAEFE------IVRDIKEKLCYV 216 (372)
T ss_pred CCCceeeeeccc---c--cccchhhheecccchhhHHHHHHHHHh-----cccccccccHHH------HHHHhHhhhccc
Confidence 99966 455553 4 233333344779999999877666655 121111 11111 123333332210
Q ss_pred ------------CceEEEEe-eeccCcceEEeecHHHH---HHHHhhhh-----hhhHHHHHHHHHHc--CCCCCCCCeE
Q psy7639 276 ------------TEASIEID-ALYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDA--KLDKSAIHDV 332 (2568)
Q Consensus 276 ------------~~~~i~i~-~l~~~~d~~~~itR~ef---e~l~~~l~-----~~i~~~i~~~l~~a--~~~~~~i~~V 332 (2568)
....+... .+.++.- +.+.-+.| |-+++|.+ ..+-..+-..+.++ .+.+.-...|
T Consensus 217 ald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~ni 294 (372)
T KOG0676|consen 217 ALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENI 294 (372)
T ss_pred ccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhhe
Confidence 01111111 0223322 45554444 33444322 22333344433333 3333347789
Q ss_pred EEcCCccchHHHHHHHHHHh
Q psy7639 333 VLVGGSTRIPKVQSLLQNFF 352 (2568)
Q Consensus 333 iLvGG~sriP~v~~~l~~~f 352 (2568)
+|+||++-.|.+.++|++.+
T Consensus 295 vLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 295 VLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred EEeCCcccchhHHHHHHHHH
Confidence 99999999999999998876
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.099 Score=61.67 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHccCC-ccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHH
Q psy7639 873 FEELCSDLFRSTLQPVEKALQDAKLD-KSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 873 fe~l~~~l~~~i~~~i~~~L~~a~~~-~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++.+.| +.++... +..++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 45556666666666666555544221 334899999999999999999999999 4666554 4499999999999974
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.75 Score=58.42 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCceEEEEE
Q psy7639 691 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFD 769 (2568)
Q Consensus 691 a~iL~~L~~~ae~~~~~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D 769 (2568)
..|..|+...--. ......-+++|-|..|...-|+.|.+.. +.-+.+-+.+ +..|.+ |+..+ .+=+|+|
T Consensus 82 e~iw~~if~~~L~-~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv---a~qavl-ya~g~-----ttG~VvD 151 (372)
T KOG0676|consen 82 EKIWHHLFYSELL-VAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV---AIQAVL-YASGR-----TTGLVVD 151 (372)
T ss_pred HHHHHHHHHHhhc-cCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH---HHHHHH-HHcCC-----eeEEEEE
Confidence 5555666521111 1122357999999999999998887764 3333333333 223333 54332 3579999
Q ss_pred eCCceeE-EEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCC-CCHHHHHHHHHHHHHHHHhcCC
Q psy7639 770 LGGGTFD-VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMS-VNPRALRRLRTAAERAKRTLSS 847 (2568)
Q Consensus 770 ~GgGT~D-vsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~-~~~~~~~~L~~~~E~aK~~LS~ 847 (2568)
+|.|-++ +-|+ +| +.+...-....+||+|+.+-|...|.+ .+.... ...+. -++.+|+.++.
T Consensus 152 ~G~gvt~~vPI~---eG--~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~~e------Iv~diKeklCy 215 (372)
T KOG0676|consen 152 SGDGVTHVVPIY---EG--YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAEFE------IVRDIKEKLCY 215 (372)
T ss_pred cCCCceeeeecc---cc--cccchhhheecccchhhHHHHHHHHHh-----cccccccccHHH------HHHHhHhhhcc
Confidence 9999664 3444 35 344444455789999999866666655 121111 11111 12233333221
Q ss_pred C------------Ccceeeec-cccCCcceEEecchHhH---HHHHHHHH---------HhHHHHHHHHHHHccCCccCc
Q psy7639 848 S------------TEASIEID-ALYDGIDFYTKISRARF---EELCSDLF---------RSTLQPVEKALQDAKLDKSAI 902 (2568)
Q Consensus 848 ~------------~~~~i~i~-~l~~~~d~~~~itr~ef---e~l~~~l~---------~~i~~~i~~~L~~a~~~~~~I 902 (2568)
. ....+... .+.|+.. +.+.-+.| |-+++|-+ +.+...|.++ +..+.+.-.
T Consensus 216 vald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kc--d~dlrk~L~ 291 (372)
T KOG0676|consen 216 VALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKC--DIDLRKDLY 291 (372)
T ss_pred cccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhC--ChhHhHHHH
Confidence 1 11111111 1333332 34443333 22333321 2223333333 333334446
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q psy7639 903 HDVVLVGGSTRIPKVQSLLQNFF 925 (2568)
Q Consensus 903 ~~ViLvGGssriP~v~~~l~~~f 925 (2568)
..|+|+||+|..|.+.+++.+..
T Consensus 292 ~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 292 ENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred hheEEeCCcccchhHHHHHHHHH
Confidence 78999999999999999998765
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.16 Score=62.38 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCccc-ccCCchhHHHhhHHHHHHH
Q psy7639 302 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN-LSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 302 ~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~-~~~npdeaVA~GAa~~aa~ 377 (2568)
+++..++..+...+...++..++ -..|+|+||.++.|.+++.+++.+ +.++. .+.+|..+-|.|||++|..
T Consensus 217 dI~aGl~~sia~rv~~~~~~~~i----~~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 217 MVIAAYCQAMAERVVSLLERIGV----EEGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccCC----CCCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444455555444444444332 236899999999999999999999 55655 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.3 Score=57.89 Aligned_cols=184 Identities=20% Similarity=0.225 Sum_probs=107.0
Q ss_pred eEEEEEeCCcceEEEEeeecC------CcEEEEEeecccccccccchHHHHHHHHHHHHH---------hhhcccCCCCH
Q psy7639 191 NVLIFDLGGGTFDVSILSIDE------GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK---------RKYKKDMSVNP 255 (2568)
Q Consensus 191 ~vlV~D~GggT~Dvsv~~~~~------~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~---------~~~~~~~~~~~ 255 (2568)
.-|++=+|-+|.++.+-+-.. |.....+-.+.-..-||..-.=.|++||.+... .+++..+ ..
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YE 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HH
Confidence 345555777777777654321 112222222222344788888888888877631 1111110 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEeeecc------CcceE-------EeecHHHHHHHHhhhhhhhH---HHHHHHH
Q psy7639 256 RALRRLRTAAERAKRTLSSSTEASIEIDALYD------GIDFY-------TKISRARFEELCSDLFRSTL---QPVEKAL 319 (2568)
Q Consensus 256 ~~~~~L~~~aE~aK~~LS~~~~~~i~i~~l~~------~~d~~-------~~itR~efe~l~~~l~~~i~---~~i~~~l 319 (2568)
....++..-+++.+...+....- +-++.+.+ +.+.+ +.-+.+.+..+....+.-+. ..|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASGL-HVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCCc-EecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23344555556666666443322 22222211 11122 22234444455555555443 3455666
Q ss_pred HHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 320 QDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 320 ~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
++.|+ .|+.|.+.||..+.|.+.+.+.+.. +.++..+ ..++++++|+|+.|+.-.|.+
T Consensus 426 ~~~g~---~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 426 EDQGI---AIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred HHcCC---eeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhccC
Confidence 66664 5899999999999999999999988 5666544 789999999999999776654
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.35 Score=66.19 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=64.6
Q ss_pred ecHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHH
Q psy7639 295 ISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQ 374 (2568)
Q Consensus 295 itR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~ 374 (2568)
-+|.++..++.-+++.+.-.++.+++...-....++.|.++||+++++...+.+.+.+ +.++.... -.|+.++|||+.
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~l 487 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPY-VNEAVLHGAAML 487 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecC-hhHHHHHHHHHH
Confidence 3577777788888887776666555543211224789999999999999999999999 78886654 456889999999
Q ss_pred HHHHcCC
Q psy7639 375 AAILSGD 381 (2568)
Q Consensus 375 aa~ls~~ 381 (2568)
|+.-.|.
T Consensus 488 A~~~~G~ 494 (541)
T TIGR01315 488 GAKAAGT 494 (541)
T ss_pred HHHhcCc
Confidence 9876654
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.35 Score=65.41 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=50.3
Q ss_pred HHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 317 KALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 317 ~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
+.+++.+. .++.|+++||+++++...+++.+.+ +.++....+.+++.++|||+.|+.-.|.+
T Consensus 378 ~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G~~ 439 (484)
T PRK15027 378 DVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANPE 439 (484)
T ss_pred HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcCCc
Confidence 44444443 4789999999999999999999999 78886666777789999999999776653
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.43 Score=65.31 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=53.2
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHH
Q psy7639 303 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 303 l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ 377 (2568)
+++-+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.++... +..++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~-~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTV-QRPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEec-CCCCchHHHHHHHHHH
Confidence 34455555555555555544432 35889999999999999999999999 5677654 4447889999999985
|
|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.33 Score=60.72 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=12.7
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHH
Q psy7639 1672 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 1742 (2568)
Q Consensus 1672 l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai 1742 (2568)
+++-..+++.+.|+++....+..+.+.. ++.+||.+ |++-..+.+.++-+.+..+..|.-+-|+||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~~-lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDFP-LVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccc-cccccccc--cccccccccccccccccccccccccccccccc
Confidence 3334445555555555545566654422 55666665 78888888888766676666678889999984
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.49 Score=64.01 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=53.9
Q ss_pred HHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 876 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 876 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
+++-+++.+.-.++..++...-....++.|+++||+++++...+++.+.| +.++....+.+++.++|||+.|+.-.|
T Consensus 361 l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 361 LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 33344444443333333322211224789999999999999999999999 677755556777899999999987655
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.58 Score=64.12 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=64.4
Q ss_pred ecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHH
Q psy7639 867 KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 946 (2568)
Q Consensus 867 ~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl 946 (2568)
.-+|..+..++.-+++.+.=.++.+++...-....++.|.++||.++++...+++.+.+ +.++.... ..|+.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPY-VNEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecC-hhHHHHHHHHH
Confidence 33566777788888887776666666544322234889999999999999999999999 67776554 45688999999
Q ss_pred HHHHHcC
Q psy7639 947 QAAILSG 953 (2568)
Q Consensus 947 ~aa~ls~ 953 (2568)
.|+.-.|
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9987655
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.4 Score=57.35 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeC
Q psy7639 1488 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLG 1567 (2568)
Q Consensus 1488 ~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~G 1567 (2568)
..|+.+++.+.. ++.....+|=|=-.-=-.....++.++-+..|+++..|=-|=+|--.+.+...........+|+|+|
T Consensus 62 ~~L~~F~~~~~~-~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIG 140 (496)
T PRK11031 62 QCLRLFAERLQD-IPPSQIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIG 140 (496)
T ss_pred HHHHHHHHHHHh-CCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEec
Confidence 445555555533 3333233333322222344667788888889999965444555544444443332223468999999
Q ss_pred CcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHH
Q psy7639 1568 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRL 1604 (2568)
Q Consensus 1568 GGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l 1604 (2568)
||++.+++++ ++.. ..... -.+|...+.+.+
T Consensus 141 GGStEl~~~~--~~~~---~~~~S-l~lG~vrl~e~f 171 (496)
T PRK11031 141 GASTELVTGT--GAQA---TSLFS-LSMGCVTWLERY 171 (496)
T ss_pred CCeeeEEEec--CCce---eeeeE-EeccchHHHHHh
Confidence 9999999987 5532 22222 236766554443
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.59 Score=63.98 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=53.3
Q ss_pred HHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHH
Q psy7639 876 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 876 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
+++.+++.+.=.++..++..+.. ..++.|+++||+|+.|.+.+++.+.| +.++...- ..++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~-~~ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQ-RPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecC-CCCchHHHHHHHHHH
Confidence 45555555555555555554432 35889999999999999999999999 45666544 447889999999986
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.67 Score=50.03 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=21.7
Q ss_pred EEEEEeCCcceEEEEeeecCCcEEEEEeec
Q psy7639 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTA 221 (2568)
Q Consensus 192 vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~ 221 (2568)
|+++|+|++++.+++++......++++..+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g 30 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVG 30 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES--
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEe
Confidence 679999999999999998555455666544
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.44 E-value=3.5 Score=54.01 Aligned_cols=183 Identities=20% Similarity=0.208 Sum_probs=102.5
Q ss_pred eEEEEEeCCceeEEEEEEEc---C---CcEEEEEeeccCCCCccchHHHHHHHHHHHHHH---------hhhccCCCCCH
Q psy7639 764 NVLIFDLGGGTFDVSILSID---E---GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK---------RKYKKDMSVNP 828 (2568)
Q Consensus 764 ~vlV~D~GgGT~Dvsv~~~~---~---~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~---------~~~~~~~~~~~ 828 (2568)
+-|++=+|-+|+++.+-.-. . |.....+-...-..=||+.-.-.|.+||.+... .+++.. ...
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~--~~~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEE--IYE 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhH--HHH
Confidence 34566678778777765421 1 111111211212234677777778888876531 111110 011
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeeccccC------Ccc-------eEEecchHhHHHHHHHHHHhHHH---HHHHHH
Q psy7639 829 RALRRLRTAAERAKRTLSSSTEASIEIDALYD------GID-------FYTKISRARFEELCSDLFRSTLQ---PVEKAL 892 (2568)
Q Consensus 829 ~~~~~L~~~~E~aK~~LS~~~~~~i~i~~l~~------~~d-------~~~~itr~efe~l~~~l~~~i~~---~i~~~L 892 (2568)
....++..-+++++...+..... +-++.+.. +.+ ++..=+.+.+-.+..-++.-+.- .|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASGL-HVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCCc-EecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23445555566666666443322 22222221 111 12222334343555555554433 344444
Q ss_pred HHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 893 QDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 954 (2568)
Q Consensus 893 ~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~~ 954 (2568)
++.+ -.|+.|+..||-.+.|.+.+.+.+.. +.++..+ ..++++++|+|+.|+.-.+.
T Consensus 426 ~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 426 EDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred HHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 4544 45999999999999999999999998 4555443 78899999999999976654
|
|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=89.63 E-value=1 Score=56.53 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=11.4
Q ss_pred HHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHH
Q psy7639 878 SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 946 (2568)
Q Consensus 878 ~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl 946 (2568)
+-..+++.+.|+++....+.++.+. .++.+||.+ |++...|.+.++-..+..+..+.-+-|.||++
T Consensus 218 ~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 218 RIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3344455555555544446555432 245556665 77777777777656666666678899999985
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=88.81 E-value=3.3 Score=54.58 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=58.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHcCCCC-CCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHc
Q psy7639 301 EELCSDLFRSTLQPVEKALQDAKLDK-SAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379 (2568)
Q Consensus 301 e~l~~~l~~~i~~~i~~~l~~a~~~~-~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls 379 (2568)
+.++.-.++.+.--++..|+...... ..|+.+.+.||.|+-|.+.+.+.+.+ +.++..+.++|. |+.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 33333444444444444443332222 46888999999999999999999999 688888888888 9999999999888
Q ss_pred CC
Q psy7639 380 GD 381 (2568)
Q Consensus 380 ~~ 381 (2568)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 76
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.96 Score=48.83 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=27.8
Q ss_pred EEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCc--cchHH--HHHHHHHH
Q psy7639 765 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG--GEDFD--NRLVSHLA 813 (2568)
Q Consensus 765 vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lG--G~~~D--~~l~~~l~ 813 (2568)
|+++|+|++++.+.+++......+.++..+.-+..| |..+. +.+.+-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 578999999999999997544356666533222211 55665 54444443
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.1 Score=60.21 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=54.0
Q ss_pred HHhhhhhhhHHHHH---HHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHc
Q psy7639 303 LCSDLFRSTLQPVE---KALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379 (2568)
Q Consensus 303 l~~~l~~~i~~~i~---~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls 379 (2568)
+++-+++.+.-.++ +.+++.+. ..++.|.++||++++|...+.+.+.| +.++...-+ .++.++|||+.|+.-.
T Consensus 367 l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 367 IYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFYGV 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHHhc
Confidence 44444444443333 44444431 24788999999999999999999999 688865444 5788999999999776
Q ss_pred CCC
Q psy7639 380 GDQ 382 (2568)
Q Consensus 380 ~~~ 382 (2568)
|.+
T Consensus 443 G~~ 445 (465)
T TIGR02628 443 GEY 445 (465)
T ss_pred Ccc
Confidence 643
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.84 Score=61.94 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=45.1
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||++|++...+++.+.| +.++.. .+..|+.|+|||+.|+.-.|.+
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~-~~~~e~~alGaA~~a~~~~G~~ 451 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVR-PKVTETTALGAAYAAGLAVGYW 451 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEe-cCCCcchHHHHHHHHHhhcCcC
Confidence 4789999999999999999999999 778865 4556788999999998776643
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.98 Score=61.38 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=54.4
Q ss_pred HHhhhhhhhHHHHHHHHHHcC-CCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 303 LCSDLFRSTLQPVEKALQDAK-LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381 (2568)
Q Consensus 303 l~~~l~~~i~~~i~~~l~~a~-~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~ 381 (2568)
+++-+++.+.-.++..++... .....++.|.++||++++|...+.+.+.| +.++.. .+..|+.|+|||+.|+.-.|.
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVER-PVVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEe-cCcccchHHHHHHHHhhhcCc
Confidence 444445555444444433221 11124789999999999999999999999 678764 355678899999999877664
Q ss_pred C
Q psy7639 382 Q 382 (2568)
Q Consensus 382 ~ 382 (2568)
+
T Consensus 455 ~ 455 (498)
T PRK00047 455 W 455 (498)
T ss_pred C
Confidence 3
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.89 E-value=1 Score=61.27 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=54.0
Q ss_pred HHhhhhhhhHHHHHHHHHHcCC-CCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 303 LCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381 (2568)
Q Consensus 303 l~~~l~~~i~~~i~~~l~~a~~-~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~ 381 (2568)
++.-+++.+.-.++..++...- ....++.|.++||+++++...+.+.+.| +.++... +..|+.++|||+.|+.-.|.
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVP-EMAETTALGAALLAGLAVGV 457 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEec-CcccchHHHHHHHHHhhcCc
Confidence 3444444444444444432211 0123789999999999999999999999 7777654 46668899999999877665
Q ss_pred C
Q psy7639 382 Q 382 (2568)
Q Consensus 382 ~ 382 (2568)
+
T Consensus 458 ~ 458 (504)
T PTZ00294 458 W 458 (504)
T ss_pred c
Confidence 3
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=87.83 E-value=0.96 Score=61.36 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=54.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHccC-CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHc
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
..++.-+++.+.-.++..++...- ....++.|.++||.++++...+++.+.| +.++.. .+..|+.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~-~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVR-PKVTETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEe-cCCCcchHHHHHHHHHhhc
Confidence 334444455554444444443321 1224789999999999999999999999 577755 4556788999999998765
Q ss_pred C
Q psy7639 953 G 953 (2568)
Q Consensus 953 ~ 953 (2568)
|
T Consensus 449 G 449 (493)
T TIGR01311 449 G 449 (493)
T ss_pred C
Confidence 5
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.1 Score=60.77 Aligned_cols=53 Identities=30% Similarity=0.603 Sum_probs=45.4
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||+++++.+.+++.+.| +.++... +..++.++|||+.|+.-.+.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcCCC
Confidence 4789999999999999999999999 6777654 567789999999999876643
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.35 E-value=27 Score=46.88 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=61.5
Q ss_pred eecHHHHHHHHHHHHHHHHHHHhCCCCCeEE-EEecCCC-CHHHHHHHHHHHHHcCCcEEEEecchhHHHHhhccccccC
Q psy7639 110 TFAPEEISSMVLTKMKETAEAYLGHSVRDAV-ITVPAYF-NDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK 187 (2568)
Q Consensus 110 ~~speel~a~~L~~l~~~ae~~l~~~~~~~V-ITVPa~f-~~~qr~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~ 187 (2568)
.+++ +-+...+..|+..++..-+..+.++. ++.-|.= -.+.-+.+..+-+..|+++-.+=-|-+|=-.++|.-..++
T Consensus 48 ~L~~-eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~ 126 (492)
T COG0248 48 NLSE-EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP 126 (492)
T ss_pred CcCH-HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC
Confidence 3444 44556666666666655555666632 2211111 1223355677778889987555556666555556655555
Q ss_pred CCceEEEEEeCCcceEEEEeee
Q psy7639 188 GERNVLIFDLGGGTFDVSILSI 209 (2568)
Q Consensus 188 ~~~~vlV~D~GggT~Dvsv~~~ 209 (2568)
.....+|+|+|||+|.+++..-
T Consensus 127 ~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 127 RKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CCCCEEEEEecCCeEEEEEecC
Confidence 4778999999999999999863
|
|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=1 Score=62.04 Aligned_cols=74 Identities=20% Similarity=0.446 Sum_probs=53.3
Q ss_pred HHhhhhhhhHHHHH---HHHHHcCCCCCCCCeEEEcCCc-cchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHH
Q psy7639 303 LCSDLFRSTLQPVE---KALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 303 l~~~l~~~i~~~i~---~~l~~a~~~~~~i~~ViLvGG~-sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~l 378 (2568)
+++-+++.+.-.++ +.|++.+. .++.|.++||+ ++++...+.+.+.| +.++.. ..+.|+.|+|||+.|+.-
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~~ 487 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQV-VASDQCPALGAAIFAAVA 487 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhc-CCceEe-cCccccchHHHHHHHHHH
Confidence 34444444443333 34444442 47889999999 99999999999999 677754 356678899999999876
Q ss_pred cCC
Q psy7639 379 SGD 381 (2568)
Q Consensus 379 s~~ 381 (2568)
.|.
T Consensus 488 ~G~ 490 (548)
T PRK04123 488 AGA 490 (548)
T ss_pred hcc
Confidence 554
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.6 Score=57.47 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=58.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHccCCc-cCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHc
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAKLDK-SAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~~~~-~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
+.++...++-+.--++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.++|. |+.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 33444444444444444444333333 46888999999999999999999999 488888888887 9999999999988
Q ss_pred CC
Q psy7639 953 GD 954 (2568)
Q Consensus 953 ~~ 954 (2568)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 75
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.3 Score=60.25 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcc-CCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHc
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAK-LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
..+++-+++.+.-.++..++... .....++.|.++||.+++|...+++.+.| +.++... +..|+.++|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhc
Confidence 34455555555544444444332 11224789999999999999999999999 5677543 456788999999998765
Q ss_pred C
Q psy7639 953 G 953 (2568)
Q Consensus 953 ~ 953 (2568)
|
T Consensus 453 G 453 (498)
T PRK00047 453 G 453 (498)
T ss_pred C
Confidence 5
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=87.05 E-value=1.2 Score=61.06 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=48.7
Q ss_pred HHHHHHcCCCCCCCCeEEEcCCc-cchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 316 EKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 316 ~~~l~~a~~~~~~i~~ViLvGG~-sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
-+.|+..+. .++.|.++||+ ++++...+.+.+.| +.++....+ .|+.|+|||+.|+.-.|.+
T Consensus 426 l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G~~ 488 (536)
T TIGR01234 426 METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAGVY 488 (536)
T ss_pred HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcCCc
Confidence 344444443 47899999999 99999999999999 688866554 4688999999999876643
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.4 Score=59.63 Aligned_cols=79 Identities=23% Similarity=0.406 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHccC-CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHH
Q psy7639 873 FEELCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951 (2568)
Q Consensus 873 fe~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~l 951 (2568)
.+.+++-+++.+.-.++..++...- ....++.|.++||.++.+.+.+++.+.| +.++... +..++.++|||+.|+.-
T Consensus 361 ~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~ 438 (481)
T TIGR01312 361 RADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWA 438 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHh
Confidence 3344444454444444444433221 1124789999999999999999999999 5666554 46678999999999876
Q ss_pred cC
Q psy7639 952 SG 953 (2568)
Q Consensus 952 s~ 953 (2568)
.+
T Consensus 439 ~g 440 (481)
T TIGR01312 439 LG 440 (481)
T ss_pred cC
Confidence 65
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=1.3 Score=60.98 Aligned_cols=77 Identities=18% Similarity=0.351 Sum_probs=53.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCC-CCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGs-sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.+++-+++.+.-.++.+++...-....++.|.++||. ++.+.+.+++.+.| +.++... .+.|+.++|||+.|+.-.|
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 3455555555444444443332122347889999999 99999999999999 5666443 5567889999999987554
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=86.75 E-value=1.3 Score=59.65 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=53.3
Q ss_pred HHHHHHHHHhHHHHHHHH---HHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHH
Q psy7639 874 EELCSDLFRSTLQPVEKA---LQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~---L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
..+++-+++.+.-.++.. +++.+ ...++.|.++||.+++|...+++.+.| +.++...-+ .++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHH
Confidence 334445555544444443 33332 124788999999999999999999999 577755444 57889999999987
Q ss_pred HcC
Q psy7639 951 LSG 953 (2568)
Q Consensus 951 ls~ 953 (2568)
-.|
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 655
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.2 Score=59.92 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=56.0
Q ss_pred cHHHHHHHHhhhhhhhHHHHHHHHHHcC-CCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHH
Q psy7639 296 SRARFEELCSDLFRSTLQPVEKALQDAK-LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQ 374 (2568)
Q Consensus 296 tR~efe~l~~~l~~~i~~~i~~~l~~a~-~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~ 374 (2568)
+|.++ ++-+++.+.-.++..++... .....++.|.++||++++|...+.+.+.| +.++... +..+++++|||+.
T Consensus 359 ~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~-~~~e~~a~GaA~l 433 (470)
T PRK10331 359 TRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVL-DDAETTVAGAAMF 433 (470)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEec-CcccchHHHHHHH
Confidence 45553 44444444443333333221 11224789999999999999999999999 6787654 4557889999999
Q ss_pred HHHHcCCC
Q psy7639 375 AAILSGDQ 382 (2568)
Q Consensus 375 aa~ls~~~ 382 (2568)
|+.-.|.+
T Consensus 434 a~~~~G~~ 441 (470)
T PRK10331 434 GWYGVGEF 441 (470)
T ss_pred HHHhcCCC
Confidence 98766643
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=86.48 E-value=1.5 Score=60.08 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=52.3
Q ss_pred HHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCC-CCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 876 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 876 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGs-sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
+++-+++.+.-.++..++...-....++.|+++||. ++.+.+.+++.+.| +.++....+ .|+.|+|||+.|+.-.|
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 344444444333333333222112248899999999 99999999999999 577765544 46889999999987665
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=1.5 Score=59.57 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=53.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHccC-CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.++.-+++.+.-.++..++...- ....++.|.++||.++++...+++.+.| +.++... ...|+.++|||+.|+.-.|
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVP-EMAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEec-CcccchHHHHHHHHHhhcC
Confidence 34444555554444444443221 1123789999999999999999999999 5666544 4556889999999987655
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=1.5 Score=59.24 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=53.5
Q ss_pred HHHHHHHhHHHHHHHHHHHccC-CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 876 LCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 876 l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
+++-+++.+.-.++..++...- ....++.|.++||.++.|...+++.+.| +.++... ...|+.++|||+.|+.-.|
T Consensus 363 l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~-~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 363 FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVL-DDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEec-CcccchHHHHHHHHHHhcC
Confidence 4445555554444444443321 1234889999999999999999999999 5666544 4557889999999987554
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.3 Score=60.42 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=54.3
Q ss_pred HHhhhhhhhHHHHHHHHHH---c-CC--CCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHH
Q psy7639 303 LCSDLFRSTLQPVEKALQD---A-KL--DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 303 l~~~l~~~i~~~i~~~l~~---a-~~--~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa 376 (2568)
+++-+++.+.-.++..++. . +. ....++.|.++||++++|...+.+.+.| +.++.. .+..|+.|+|||+.|+
T Consensus 381 l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~-~~~~e~~alGaA~~A~ 458 (512)
T PLN02295 381 IARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVR-PADIETTALGAAYAAG 458 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEe-cCccccHHHHHHHHHH
Confidence 4444455554444444442 2 21 2234788999999999999999999999 777754 4556889999999998
Q ss_pred HHcCC
Q psy7639 377 ILSGD 381 (2568)
Q Consensus 377 ~ls~~ 381 (2568)
.-.|.
T Consensus 459 ~~~G~ 463 (512)
T PLN02295 459 LAVGL 463 (512)
T ss_pred hhcCc
Confidence 77664
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=85.69 E-value=1.6 Score=58.71 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||++++++..+.+.+.+ +.++.. . +.|+.|+|||+.|+.-.|.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~-~~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIA-G-PVEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEc-C-CchHHHHHHHHHHHHhcCCc
Confidence 4789999999999999999999999 677753 2 36799999999999876654
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.5 Score=59.74 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=44.3
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~ 381 (2568)
.++.|.++||+++++...+.+.+.| +.++...- ..++.++|||+.|+.-.|.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~-~~e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPE-SYESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecC-CCCcchHHHHHHHHHhcCc
Confidence 4889999999999999999999999 67886544 4468899999999876654
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=85.42 E-value=19 Score=46.15 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=110.7
Q ss_pred CCcccEEEEc-cCCCCHHHHHHHHHHHHHc-CCceeEEechhhHHHhhcccc--cCcCCcceEEEEeeCCeeeEEEEEEE
Q psy7639 2076 HSVRDAVITV-PAYFNDAQRQATKDAGAIA-GLNVMRIVNEPTAAALAYGLD--KNLKGERNVLIFDLGGGTFDVSILSI 2151 (2568)
Q Consensus 2076 ~~v~~aVItV-Pa~f~~~qR~a~~~Aa~~A-Gl~vl~linEptAaalaYg~~--~~~~~~~~vlv~DlGggt~dvsil~~ 2151 (2568)
.+++.+++|+ |..|+- -|-++--|-.+| .+++ .++-=++-.|.+|... ...+.+--+|++|= |++. ++..-
T Consensus 71 ~did~iavt~GPG~~tg-lrvg~~~Ak~La~~~~i-pl~~v~h~~~ha~~a~~~s~~~~~~lvl~vsG--G~s~-~~~~~ 145 (332)
T PRK09604 71 EDIDAIAVTAGPGLVGA-LLVGVSFAKALALALNK-PLIGVNHLEGHLLAPFLEEEPEFPFLALLVSG--GHTQ-LVLVK 145 (332)
T ss_pred HHCCEEEEecCCCcHHh-HHHHHHHHHHHHHHhCC-CEEeecCHHHHHHhhhhccCCCCCEEEEEecC--CccE-EEEEc
Confidence 3577888888 888877 555555555555 2332 3333344333333211 11111234566663 4433 23333
Q ss_pred cCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEEeccc--C
Q psy7639 2152 DEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY--D 2229 (2568)
Q Consensus 2152 ~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i~~~~--~ 2229 (2568)
+.+ .+++++..-|..+| .+.+.+-+.-|......+ ++..-|...+.. .+.++..+ +
T Consensus 146 ~~~-~~~~l~~t~d~slG----------~~yd~~t~~LG~~~~~g~----kvmgLA~~g~~~-------~~~~~~~~~~~ 203 (332)
T PRK09604 146 GIG-DYELLGETLDDAAG----------EAFDKVAKLLGLGYPGGP----AIDKLAKQGDPD-------AFKFPRPMDRP 203 (332)
T ss_pred CCC-cEEEccccCCchhh----------HHHHHHHHHcCCCCCCcH----HHHHHHHhCCCC-------eEeCCccccCC
Confidence 445 89999887788777 445555555565433333 233333322210 01111111 2
Q ss_pred CcceEEe-----eCH------HHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCC-
Q psy7639 2230 GIDFYTK-----ISR------ARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK- 2297 (2568)
Q Consensus 2230 ~~d~~~~-----itr------~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~- 2297 (2568)
+.+|++. +.| ....+++..+...+.+.+-+.++.+. ...+++.|+|.||...=..+++.|.+.+...
T Consensus 204 ~~~~sfsg~~~~~~~~~~~~~~~~~~iA~s~q~~l~~~l~~~~~~~~-~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g 282 (332)
T PRK09604 204 GLDFSFSGLKTAVLNTIEKSEQTKADIAASFQAAVVDVLVIKTKRAL-KQTGVKTLVVAGGVAANSGLRERLAELAKKRG 282 (332)
T ss_pred CccEecCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEcChHHHHHHHHHHHHHHHHHCC
Confidence 3333331 000 11234444333333333333322221 1246788999999999999999998887321
Q ss_pred -CC---CCCCCcchhHHhhHHHHHHHhhC
Q psy7639 2298 -SL---NLSINPDEAVAYGAAVQAAILSG 2322 (2568)
Q Consensus 2298 -~~---~~~~npdeava~GAa~~aa~ls~ 2322 (2568)
.+ .....-|.++++|+|=.--...|
T Consensus 283 ~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 283 IEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 21 12235689999999854444444
|
|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=85.17 E-value=3.7 Score=51.53 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEE
Q psy7639 1486 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFD 1565 (2568)
Q Consensus 1486 ~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D 1565 (2568)
+..+|+.+++.+.. ++.+...+|-|=-..=-..+..++.+.-+..|+++..|=-|=+|...+.+...........+|+|
T Consensus 40 ~~~~L~~f~~~~~~-~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviD 118 (285)
T PF02541_consen 40 AIDALKRFKEILKD-YGVEKIRAVATSALREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVID 118 (285)
T ss_dssp HHHHHHHHHHHHHH-TTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEE
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEE
Confidence 34455555555533 33322333333222222334455666677789999654444445433333322222456789999
Q ss_pred eCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHH
Q psy7639 1566 LGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRL 1604 (2568)
Q Consensus 1566 ~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l 1604 (2568)
+|||++.+++++ ++. +..... -.+|...+.+.+
T Consensus 119 IGGGStEl~~~~--~~~---~~~~~S-l~lG~vrl~e~~ 151 (285)
T PF02541_consen 119 IGGGSTELILFE--NGK---VVFSQS-LPLGAVRLTERF 151 (285)
T ss_dssp EESSEEEEEEEE--TTE---EEEEEE-ES--HHHHHHHH
T ss_pred ECCCceEEEEEE--CCe---eeEeee-eehHHHHHHHHH
Confidence 999999999998 563 333222 237776665554
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=85.04 E-value=1.8 Score=59.01 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcc----C--CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHH
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAK----L--DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQ 947 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~----~--~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~ 947 (2568)
..+++-+++.+.-.++.+++... . ....++.|.++||++++|...+++.+.| +.++.. .+..|+.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~-~~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVR-PADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEe-cCccccHHHHHHHH
Confidence 34455555555544444444332 1 1234788999999999999999999999 566754 35567889999999
Q ss_pred HHHHcC
Q psy7639 948 AAILSG 953 (2568)
Q Consensus 948 aa~ls~ 953 (2568)
|+.-.|
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 987665
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.8 Score=58.18 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=42.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.++.|.++||+++.+...+++.+.+ +.++... +.|+.++|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999 5666432 367999999999987655
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=84.36 E-value=2.1 Score=58.34 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHccC-CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHc
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
+.++.-+++.+.-.+...+....- ....++.|.++||.++.+...+++.+.| +.++...- ..++.++|||+.|+.-.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~-~~e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPE-SYESSCLGACILGLKAL 450 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecC-CCCcchHHHHHHHHHhc
Confidence 344555555554444433322210 1124889999999999999999999999 56775544 44688999999998755
Q ss_pred C
Q psy7639 953 G 953 (2568)
Q Consensus 953 ~ 953 (2568)
|
T Consensus 451 G 451 (505)
T TIGR01314 451 G 451 (505)
T ss_pred C
Confidence 4
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.5 Score=53.52 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=48.0
Q ss_pred HHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHH
Q psy7639 892 LQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 892 L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
.+..+........|+.|||.||...|-+.|.+.| +.++.. ++..++.+.|+|+.|+.
T Consensus 433 ~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~-~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 433 AEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYT-IEGPNSAALGGAYRAAY 489 (545)
T ss_pred hccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEe-ecCCchhhHHHHHHHHH
Confidence 3455666667899999999999999999999999 566654 48889999999999864
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=84.25 E-value=3.8 Score=47.93 Aligned_cols=222 Identities=21% Similarity=0.272 Sum_probs=127.6
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcE
Q psy7639 709 VRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGAL 787 (2568)
Q Consensus 709 ~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~ 787 (2568)
-..+.+|=|.-=....|+.|.+.. +.-||.-+.+.-...-+.++-++. +=+|+|-|.|-+-+.-+- ++
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~-------tGvVvDSGDGVTHi~PVy--e~-- 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL-------TGVVVDSGDGVTHIVPVY--EG-- 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-------ceEEEecCCCeeEEeeee--cc--
Confidence 346789999998888899887764 778998777655444444333332 348999999988765432 33
Q ss_pred EEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCC-----------CCcceeeec
Q psy7639 788 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-----------STEASIEID 856 (2568)
Q Consensus 788 ~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~-----------~~~~~i~i~ 856 (2568)
+..-.-.+-..+.|+|+.+-|++.+..+ .|...-+.+-. .....|+.|.. .-++++-++
T Consensus 170 ~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADFE-------TVR~iKEKLCYisYd~e~e~kLalETTvLv~ 239 (389)
T KOG0677|consen 170 FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADFE-------TVREIKEKLCYISYDLELEQKLALETTVLVE 239 (389)
T ss_pred eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccchH-------HHHHHHhhheeEeechhhhhHhhhhheeeee
Confidence 2222223345678999999888877643 11111111111 12233333321 011222222
Q ss_pred --cccCCcceEEecchHhHH---HHHHHHHH-----hHHHHHHHHHHHccCCcc--CcCeEEEEcCCCCcHHHHHHHHHH
Q psy7639 857 --ALYDGIDFYTKISRARFE---ELCSDLFR-----STLQPVEKALQDAKLDKS--AIHDVVLVGGSTRIPKVQSLLQNF 924 (2568)
Q Consensus 857 --~l~~~~d~~~~itr~efe---~l~~~l~~-----~i~~~i~~~L~~a~~~~~--~I~~ViLvGGssriP~v~~~l~~~ 924 (2568)
.+.+|.- +.+--+.|| .+++|.+- .+.+++-.+++.+.++.. --.+|+|.||++.-|.+-.+|++.
T Consensus 240 ~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 240 SYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred eeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 2344433 344455554 56666442 344566667776655422 256899999999999988888765
Q ss_pred hCCc----------------c--ccccCCchhHHHhhHHHHHHHHcC
Q psy7639 925 FCGK----------------S--LNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 925 f~~~----------------~--v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
+... + +..+..-...|=.|.|.+|.+...
T Consensus 318 lkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 318 LKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 4210 1 122222346677888888887654
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=84.16 E-value=14 Score=45.78 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=39.4
Q ss_pred CCCCeEEEcCC-ccchHHHHHHHHHHh--CCCcccccCCchhHHHhhHHH
Q psy7639 327 SAIHDVVLVGG-STRIPKVQSLLQNFF--CGKSLNLSINPDEAVAYGAAV 373 (2568)
Q Consensus 327 ~~i~~ViLvGG-~sriP~v~~~l~~~f--~~~~v~~~~npdeaVA~GAa~ 373 (2568)
..+..|+++|| .+..|.+++.+...+ -+.++..+-|+...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45889999999 777999999998876 235667788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=84.11 E-value=37 Score=43.32 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=65.9
Q ss_pred EEecCCCceEEEEEcCceeeeChhhhHHHHHHHHHHHHHHHh--CCCcccEEEEccCCCCHHH------------HHHHH
Q psy7639 2033 VVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYL--GHSVRDAVITVPAYFNDAQ------------RQATK 2098 (2568)
Q Consensus 2033 ~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~lk~~ae~~~--g~~v~~aVItVPa~f~~~q------------R~a~~ 2098 (2568)
+++.+|++........ ..+|+++...+...+++..++.- ..++..+.|++|..++... .-.++
T Consensus 14 l~d~~g~i~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~ 90 (318)
T TIGR00744 14 VVDEEGNILSKWKVPT---DTTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLK 90 (318)
T ss_pred EECCCCCEEEEEEeCC---CCCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHH
Confidence 3455565543333221 13566666666665655544331 2357788999998775321 11122
Q ss_pred HH-HHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeEEEEEE
Q psy7639 2099 DA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILS 2150 (2568)
Q Consensus 2099 ~A-a~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~ 2150 (2568)
+. .+.-|+.| .+.|+-.|+|++..........++++++.+|.|- -.+++.
T Consensus 91 ~~l~~~~~~pv-~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~ 141 (318)
T TIGR00744 91 EKVEARVGLPV-VVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIII 141 (318)
T ss_pred HHHHHHHCCCE-EEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEE
Confidence 22 23448876 5999999999976443222245789999999874 555553
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=1.8 Score=59.22 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~ 381 (2568)
.++.|.++||+++++...+.+.+.+ +.++.... ..++.++|||+.|+.-.|.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPV-VKEATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEec-ccCchHHHHHHHHHHHhCC
Confidence 4789999999999999999999999 78886654 4467899999999876654
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=2.3 Score=57.23 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=43.7
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||++|++...+.+.+.+ +.++... +.++.++|||+.|+.-.|.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHcCCc
Confidence 4788999999999999999999999 6777543 24799999999998776653
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=5.5 Score=54.15 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEE
Q psy7639 1485 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIF 1564 (2568)
Q Consensus 1485 v~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~ 1564 (2568)
-.-..|+.+++.+..| +.....+|-|=---=-.....++.++-...|+++..|=-|=+|...+.+........++.+|+
T Consensus 64 r~~~~L~~F~~~~~~~-~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvv 142 (513)
T PRK10854 64 RGLNCLSLFAERLQGF-SPANVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVI 142 (513)
T ss_pred HHHHHHHHHHHHHHhC-CCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEE
Confidence 3445566666666443 433333444333222334566777788888999954444444544444443332223568999
Q ss_pred EeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHH
Q psy7639 1565 DLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRL 1604 (2568)
Q Consensus 1565 D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l 1604 (2568)
|+|||++.+++++ ++......+. .+|...+.+.+
T Consensus 143 DIGGGStEl~~~~--~~~~~~~~S~----~lG~vrl~e~f 176 (513)
T PRK10854 143 DIGGGSTELVIGE--NFEPILVESR----RMGCVSFAQLY 176 (513)
T ss_pred EeCCCeEEEEEec--CCCeeEeEEE----ecceeeHHhhh
Confidence 9999999999997 5533333222 46766655543
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=82.85 E-value=2.7 Score=57.56 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=42.9
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.++.|.++||.++++...+++.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPV-VKEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEec-ccCchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 67776554 446789999999987655
|
|
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=82.68 E-value=44 Score=42.32 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=49.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHH------------HHHHHHH-HHHHcCCceeEEechhhHHHh
Q psy7639 2054 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDA------------QRQATKD-AGAIAGLNVMRIVNEPTAAAL 2120 (2568)
Q Consensus 2054 ~peei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~------------qR~a~~~-Aa~~AGl~vl~linEptAaal 2120 (2568)
+|+++...+...+++.... . ..+..+.|++|...+.. ..-.+++ -.+.-|+.| .+.|+-.|||+
T Consensus 35 ~~~~~~~~i~~~i~~~~~~-~-~~~~gIgi~~pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv-~~~NDa~aaA~ 111 (301)
T PRK09557 35 DYQQTIEAIATLVDMAEQA-T-GQRGTVGVGIPGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREV-RLANDANCLAV 111 (301)
T ss_pred CHHHHHHHHHHHHHHHHhh-c-CCceEEEecCcccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCE-EEccchhHHHH
Confidence 4555555554444433221 1 23445777777655321 1111222 122338875 69999999999
Q ss_pred hcccccCcCCcceEEEEeeCCeeeEEEEE
Q psy7639 2121 AYGLDKNLKGERNVLIFDLGGGTFDVSIL 2149 (2568)
Q Consensus 2121 aYg~~~~~~~~~~vlv~DlGggt~dvsil 2149 (2568)
+--........++++++.+|.| .-..++
T Consensus 112 aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 112 SEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 8644322224567888888754 344444
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.5 Score=56.90 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=42.0
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.++.|.++||+++.+...+++.+.+ +.++... . .++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC-C-hhHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999 5666443 2 47999999999987655
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=82.44 E-value=2.9 Score=53.08 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=46.6
Q ss_pred HcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHH
Q psy7639 321 DAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 321 ~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ 377 (2568)
..+........|++|||.||-..|-+.|.+.| +.++.. ++..+++|.|+|++|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~-~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYT-IEGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEe-ecCCchhhHHHHHHHHH
Confidence 44555567889999999999999999999999 677754 48899999999999863
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=81.72 E-value=20 Score=44.48 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=39.4
Q ss_pred ccCcCeEEEEcC-CCCcHHHHHHHHHHhC--CccccccCCchhHHHhhHHH
Q psy7639 899 KSAIHDVVLVGG-STRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAAV 946 (2568)
Q Consensus 899 ~~~I~~ViLvGG-ssriP~v~~~l~~~f~--~~~v~~~~npdeaVA~GAAl 946 (2568)
...+..|+++|| .+..|.+++.+...+. +.++..+.|+...+|+||++
T Consensus 228 ~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 228 RYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 345889999999 6789999999987762 35667788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=80.49 E-value=68 Score=40.87 Aligned_cols=94 Identities=27% Similarity=0.355 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHh--CCCCCeEEEEEcCCCCHHH------------HHHHHHHH-HHcCCCeeeecchhHHH
Q psy7639 685 APEEISSMVLTKMKETAEAYL--GHSVRDAVITVPAYFNDAQ------------RQATKDAG-AIAGLNVMRIVNEPTAA 749 (2568)
Q Consensus 685 speev~a~iL~~L~~~ae~~~--~~~~~~~VITVPa~f~~~q------------r~al~~Aa-~~AGl~~l~li~Ep~AA 749 (2568)
+++++...+...+.+..+..- ...+..+.|++|..++... ...+.+.. +..|++ +.+.|+..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 567766666666666554321 1346677888887554221 11233333 334765 5799999999
Q ss_pred HHHhccccCCCCCceEEEEEeCCceeEEEEE
Q psy7639 750 ALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 780 (2568)
Q Consensus 750 Al~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~ 780 (2568)
|++-.........++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 9875443333345789999999876 55555
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=80.15 E-value=33 Score=40.60 Aligned_cols=208 Identities=20% Similarity=0.261 Sum_probs=121.0
Q ss_pred HHHHHHHH-HHhC--CCCCeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEe
Q psy7639 122 TKMKETAE-AYLG--HSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 197 (2568)
Q Consensus 122 ~~l~~~ae-~~l~--~~~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~ 197 (2568)
.|+++++= ..+. ..-.++.+|=|+-=....|+.|-+.. +.-|+.-+.+--...-+.++-+.. .=+|+|-
T Consensus 84 ~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~-------tGvVvDS 156 (389)
T KOG0677|consen 84 EHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL-------TGVVVDS 156 (389)
T ss_pred HHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-------ceEEEec
Confidence 45555541 1223 23347899999999999999998775 666988776644333222222222 3589999
Q ss_pred CCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCC---
Q psy7639 198 GGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS--- 274 (2568)
Q Consensus 198 GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~--- 274 (2568)
|.|-|.+.=+- ++ +...--.+.-.+.|+|+++-|.+.+..+= |...-..+-. ..+..|+.|.-
T Consensus 157 GDGVTHi~PVy--e~--~~l~HLtrRldvAGRdiTryLi~LLl~rG---YafN~tADFE-------TVR~iKEKLCYisY 222 (389)
T KOG0677|consen 157 GDGVTHIVPVY--EG--FVLPHLTRRLDVAGRDITRYLIKLLLRRG---YAFNHTADFE-------TVREIKEKLCYISY 222 (389)
T ss_pred CCCeeEEeeee--cc--eehhhhhhhccccchhHHHHHHHHHHhhc---cccccccchH-------HHHHHHhhheeEee
Confidence 99988776431 12 11111112245789999998887775431 2211112222 22333433321
Q ss_pred --------CCceEEEEee--eccCcceEEeecHHHH---HHHHhhhh-----hhhHHHHHHHHHHcCCCC--CCCCeEEE
Q psy7639 275 --------STEASIEIDA--LYDGIDFYTKISRARF---EELCSDLF-----RSTLQPVEKALQDAKLDK--SAIHDVVL 334 (2568)
Q Consensus 275 --------~~~~~i~i~~--l~~~~d~~~~itR~ef---e~l~~~l~-----~~i~~~i~~~l~~a~~~~--~~i~~ViL 334 (2568)
.-++++-+++ +.+|.- +.+-.+.| |.+++|.+ ..+.+++-.+++.+.++. .--.+|+|
T Consensus 223 d~e~e~kLalETTvLv~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVL 300 (389)
T KOG0677|consen 223 DLELEQKLALETTVLVESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVL 300 (389)
T ss_pred chhhhhHhhhhheeeeeeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeee
Confidence 1123333332 345543 45556666 46777754 345667778888776543 22579999
Q ss_pred cCCccchHHHHHHHHHHh
Q psy7639 335 VGGSTRIPKVQSLLQNFF 352 (2568)
Q Consensus 335 vGG~sriP~v~~~l~~~f 352 (2568)
.||++--|.+-.+|++.+
T Consensus 301 SGGstMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 301 SGGSTMYPGLPSRLEKEL 318 (389)
T ss_pred cCCcccCCCCcHHHHHHH
Confidence 999999999888777665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2568 | ||||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 0.0 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 0.0 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 0.0 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 0.0 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 0.0 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 0.0 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 1e-145 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 1e-145 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 1e-145 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-144 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-144 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-144 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-144 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-144 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-144 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-144 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-144 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-144 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-144 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-144 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-144 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-144 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-144 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-144 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-143 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-143 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-143 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-143 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-143 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-143 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-143 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-143 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-143 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-142 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-142 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-142 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-142 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-142 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-142 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 1e-142 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 1e-142 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 1e-142 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 1e-142 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 1e-142 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 1e-142 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-142 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-142 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-142 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-142 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-142 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-142 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-142 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-141 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-141 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-141 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-140 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-140 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-140 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-140 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-140 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-140 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-140 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-140 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-140 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-140 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-140 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-140 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-140 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-140 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-140 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-140 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-140 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-140 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 1e-140 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 1e-140 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 1e-140 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-140 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-140 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-140 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-140 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-140 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-140 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-139 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-139 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-139 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-138 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-138 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-138 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-138 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-138 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-138 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-138 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-138 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-138 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-137 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-137 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-137 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-134 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-134 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-134 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-134 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-134 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 1e-130 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 1e-129 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-122 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-122 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-122 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-119 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-119 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-112 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-112 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-112 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 1e-110 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 1e-110 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 1e-110 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 1e-110 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 1e-110 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 1e-109 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 1e-107 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 1e-107 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-107 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-107 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 5e-77 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 8e-77 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 8e-77 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 1e-73 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 1e-73 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 1e-73 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 1e-73 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 3e-67 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 3e-67 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 3e-67 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-59 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-59 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-59 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 4e-54 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 4e-54 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 4e-54 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-51 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 5e-51 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 5e-51 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 8e-51 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 4e-50 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 7e-50 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 3e-49 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 3e-49 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 7e-50 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 3e-49 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 3e-49 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-49 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-49 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-49 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 2e-48 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 2e-48 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 2e-48 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 3e-48 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 3e-48 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 3e-48 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 4e-48 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 4e-48 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 4e-48 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-47 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-47 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-47 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 6e-47 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 6e-47 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 6e-47 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-45 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-45 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-45 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-37 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-37 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-37 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-36 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-36 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-36 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 9e-32 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 3e-31 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 3e-31 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 6e-29 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 7e-29 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 7e-29 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 7e-29 | ||
| 3lof_A | 113 | C-Terminal Domain Of Human Heat Shock 70kda Protein | 2e-12 | ||
| 3lof_A | 113 | C-Terminal Domain Of Human Heat Shock 70kda Protein | 2e-12 | ||
| 3lof_A | 113 | C-Terminal Domain Of Human Heat Shock 70kda Protein | 2e-12 | ||
| 3lof_A | 113 | C-Terminal Domain Of Human Heat Shock 70kda Protein | 2e-12 | ||
| 2lmg_A | 75 | Solution Structure Of The C-Terminal Domain (537-61 | 1e-10 | ||
| 2lmg_A | 75 | Solution Structure Of The C-Terminal Domain (537-61 | 1e-10 | ||
| 2lmg_A | 75 | Solution Structure Of The C-Terminal Domain (537-61 | 1e-10 | ||
| 2lmg_A | 75 | Solution Structure Of The C-Terminal Domain (537-61 | 1e-10 | ||
| 2p32_A | 120 | Crystal Structure Of The C-Terminal 10 Kda Subdomai | 1e-07 | ||
| 2p32_A | 120 | Crystal Structure Of The C-Terminal 10 Kda Subdomai | 1e-07 | ||
| 2p32_A | 120 | Crystal Structure Of The C-Terminal 10 Kda Subdomai | 1e-07 | ||
| 2p32_A | 120 | Crystal Structure Of The C-Terminal 10 Kda Subdomai | 1e-07 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-06 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-06 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-06 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-06 | ||
| 1ud0_A | 113 | Crystal Structure Of The C-Terminal 10-Kda Subdomai | 2e-06 | ||
| 1ud0_A | 113 | Crystal Structure Of The C-Terminal 10-Kda Subdomai | 2e-06 | ||
| 1ud0_A | 113 | Crystal Structure Of The C-Terminal 10-Kda Subdomai | 2e-06 | ||
| 1ud0_A | 113 | Crystal Structure Of The C-Terminal 10-Kda Subdomai | 2e-06 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 7e-06 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 7e-06 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 7e-06 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 7e-06 |
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
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| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b. Length = 113 | Back alignment and structure |
|
| >pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b. Length = 113 | Back alignment and structure |
|
| >pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b. Length = 113 | Back alignment and structure |
|
| >pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b. Length = 113 | Back alignment and structure |
|
| >pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of Human Heat Shock Protein 70 Length = 75 | Back alignment and structure |
|
| >pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of Human Heat Shock Protein 70 Length = 75 | Back alignment and structure |
|
| >pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of Human Heat Shock Protein 70 Length = 75 | Back alignment and structure |
|
| >pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of Human Heat Shock Protein 70 Length = 75 | Back alignment and structure |
|
| >pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain From C. Elegans Hsp70 Length = 120 | Back alignment and structure |
|
| >pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain From C. Elegans Hsp70 Length = 120 | Back alignment and structure |
|
| >pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain From C. Elegans Hsp70 Length = 120 | Back alignment and structure |
|
| >pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain From C. Elegans Hsp70 Length = 120 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of Hsc70 Length = 113 | Back alignment and structure |
|
| >pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of Hsc70 Length = 113 | Back alignment and structure |
|
| >pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of Hsc70 Length = 113 | Back alignment and structure |
|
| >pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of Hsc70 Length = 113 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 1091 bits (2823), Expect = 0.0
Identities = 389/504 (77%), Positives = 451/504 (89%), Gaps = 1/504 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE
Sbjct: 52 GDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGET 111
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K+F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 112 KSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLR 171
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAA+AYGLDK + ERNVLIFDLGGGTFDVSIL+I G +FEV+STAGDTHLGG
Sbjct: 172 IINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAG-IFEVKSTAGDTHLGG 230
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNR+V+H EFKRK+KKD+S N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+G
Sbjct: 231 EDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG 290
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
IDFYT I+RARFEEL +DLFR TL PVEKAL+DAKLDKS IHD+VLVGGSTRIPK+Q LL
Sbjct: 291 IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL 350
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
Q+FF GK LN SINPDEAVAYGAAVQAAILSGD+S +QD+LL+DVTPLSLGIETAGGVM
Sbjct: 351 QDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVM 410
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
T LI+RNT IP KQTQTFTTY+DNQP V IQV+EGERAMTKDNNLLG F+LTGIPPAPRG
Sbjct: 411 TVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 470
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VP+I+VTFD+DANGILNV+A D S+GK ITI NDKGRLSKE+I+RM+ +AE+YK EDE
Sbjct: 471 VPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDE 530
Query: 1102 RQKERISARNNLEAYVFNVKQALD 1125
+Q++++S++N+LE+Y FN+K ++
Sbjct: 531 KQRDKVSSKNSLESYAFNMKATVE 554
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 1091 bits (2823), Expect = 0.0
Identities = 389/504 (77%), Positives = 451/504 (89%), Gaps = 1/504 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE
Sbjct: 52 GDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGET 111
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K+F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 112 KSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLR 171
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAA+AYGLDK + ERNVLIFDLGGGTFDVSIL+I G +FEV+STAGDTHLGG
Sbjct: 172 IINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAG-IFEVKSTAGDTHLGG 230
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNR+V+H EFKRK+KKD+S N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+G
Sbjct: 231 EDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG 290
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
IDFYT I+RARFEEL +DLFR TL PVEKAL+DAKLDKS IHD+VLVGGSTRIPK+Q LL
Sbjct: 291 IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL 350
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
Q+FF GK LN SINPDEAVAYGAAVQAAILSGD+S +QD+LL+DVTPLSLGIETAGGVM
Sbjct: 351 QDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVM 410
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
T LI+RNT IP KQTQTFTTY+DNQP V IQV+EGERAMTKDNNLLG F+LTGIPPAPRG
Sbjct: 411 TVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 470
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFD+DANGILNV+A D S+GK ITI NDKGRLSKE+I+RM+ +AE+YK EDE
Sbjct: 471 VPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDE 530
Query: 2471 RQKERISARNNLEAYVFNVKQALD 2494
+Q++++S++N+LE+Y FN+K ++
Sbjct: 531 KQRDKVSSKNSLESYAFNMKATVE 554
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 1089 bits (2819), Expect = 0.0
Identities = 392/516 (75%), Positives = 455/516 (88%), Gaps = 9/516 (1%)
Query: 45 SY--FT------GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS 96
SY FT GDAAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND
Sbjct: 40 SYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAG 99
Query: 97 KPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATK 156
+PK+QVE+KGE K+F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATK
Sbjct: 100 RPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATK 159
Query: 157 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFE 216
DAG IAGLNV+RI+NEPTAAA+AYGLDK + ERNVLIFDLGGGTFDVSIL+I G +FE
Sbjct: 160 DAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAG-IFE 218
Query: 217 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 276
V+STAGDTHLGGEDFDNR+V+H EFKRK+KKD+S N RA+RRLRTA ERAKRTLSSST
Sbjct: 219 VKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST 278
Query: 277 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 336
+ASIEID+LY+GIDFYT I+RARFEEL +DLFR TL PVEKAL+DAKLDKS IHD+VLVG
Sbjct: 279 QASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVG 338
Query: 337 GSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTP 396
GSTRIPK+Q LLQ+FF GK LN SINPDEAVAYGAAVQAAILSGD+S +QD+LL+DVTP
Sbjct: 339 GSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTP 398
Query: 397 LSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGT 456
LSLGIETAGGVM+ LI+RNT IP KQTQTFTTY+DNQP V IQV+EGERAMTKDNNLLG
Sbjct: 399 LSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGK 458
Query: 457 FDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRM 516
F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI NDKGRLSKE+I+RM
Sbjct: 459 FELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERM 518
Query: 517 INDAERYKDEDERQKERISARNNLEAYVFNVKQALD 552
+ +AE+YK EDE+Q++++S++N+LE+Y FN+K ++
Sbjct: 519 VQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 1088 bits (2816), Expect = 0.0
Identities = 388/503 (77%), Positives = 450/503 (89%), Gaps = 1/503 (0%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
DAAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE K
Sbjct: 53 DAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETK 112
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+RI
Sbjct: 113 SFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRI 172
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAA+AYGLDK + ERNVLIFDLGGGTFDVSIL+I G +FEV+STAGDTHLGGE
Sbjct: 173 INEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAG-IFEVKSTAGDTHLGGE 231
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFDNR+V+H EFKRK+KKD+S N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+GI
Sbjct: 232 DFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI 291
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
DFYT I+RARFEEL +DLFR TL PVEKAL+DAKLDKS IHD+VLVGGSTRIPK+Q LLQ
Sbjct: 292 DFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 351
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMT 1778
+FF GK LN SINPDEAVAYGAAVQAAILSGD+S +QD+LL+DVTPLSLGIETAGGVMT
Sbjct: 352 DFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMT 411
Query: 1779 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1838
LI+RNT IP KQTQTFTTY+DNQP V IQV+EGERAMTKDNNLLG F+LTGIPPAPRGV
Sbjct: 412 VLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGV 471
Query: 1839 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1898
P+I+VTFD+DANGILNV+A D S+GK ITI NDKGRLSKE+I+RM+ +AE+YK EDE+
Sbjct: 472 PQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531
Query: 1899 QKERISARNNLEAYVFNVKQALD 1921
Q++++S++N+LE+Y FN+K ++
Sbjct: 532 QRDKVSSKNSLESYAFNMKATVE 554
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 427 bits (1100), Expect = e-132
Identities = 149/203 (73%), Positives = 181/203 (89%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
+FF GK LN SINPDEAVAYGAAVQAAILSGD+S +QD+LL+DVTPLSLGIETAGGVM+
Sbjct: 352 DFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMT 411
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
LI+RNT IP KQTQTFTTY+DNQP V IQV+EGERAMTKDNNLLG F+LTGIPPAPRGV
Sbjct: 412 VLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGV 471
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1377
P+I+VTFD+DANGILNV+A D S+GK ITI NDKGRLSKE+I+RM+ +AE+YK EDE+
Sbjct: 472 PQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531
Query: 1378 QKERISARNNLEAYVFNVKQALD 1400
Q++++S++N+LE+Y FN+K ++
Sbjct: 532 QRDKVSSKNSLESYAFNMKATVE 554
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 999 bits (2584), Expect = 0.0
Identities = 166/597 (27%), Positives = 285/597 (47%), Gaps = 31/597 (5%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 680
G+ KN+ N KNTV + KR+IG + P +Q+ KH+ +V D K +V F GE
Sbjct: 50 GETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGE 109
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +
Sbjct: 110 KHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPV 169
Query: 741 RIVNEPTAAALAYGLDKNL-----KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 795
RIVN+ TAA ++YG+ K + R V D+G ++ SI++ +G +V TA
Sbjct: 170 RIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG-QLKVLGTAC 228
Query: 796 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 855
D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A +
Sbjct: 229 DKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSV 288
Query: 856 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 915
+++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 289 ESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIP 348
Query: 916 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 975
++ + F GK L+ ++N DEA+A GAA AI S ++ D+ P S+
Sbjct: 349 TLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDIHPYSVSYS 405
Query: 976 TAGGV----MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFD 1031
V ++ + P + T D A + T + + ++
Sbjct: 406 WDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWE 463
Query: 1032 LTGI--PPAPRGVPKIDVTFDLDANGILNV----------TAKDTSSGKSQNITIKNDKG 1079
+TG+ P VP + + D +G+ + DT + K ++TI
Sbjct: 464 ITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTF 522
Query: 1080 RLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSR 1138
L ++++ +I +D+ E +N LE Y++ ++ L + +++EK++
Sbjct: 523 GLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTK 582
Query: 1139 CREECDATLKWL-DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRG 1194
+ + +WL D + K +Y K ++L + + +
Sbjct: 583 LQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQ 639
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 998 bits (2583), Expect = 0.0
Identities = 167/606 (27%), Positives = 288/606 (47%), Gaps = 31/606 (5%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 107
G+ KN+ N KNTV + KR+IG + P +Q+ KH+ +V D K +V F GE
Sbjct: 50 GETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGE 109
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +
Sbjct: 110 KHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPV 169
Query: 168 RIVNEPTAAALAYGLDKNL-----KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 222
RIVN+ TAA ++YG+ K + R V D+G ++ SI++ +G +V TA
Sbjct: 170 RIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG-QLKVLGTAC 228
Query: 223 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 282
D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A +
Sbjct: 229 DKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSV 288
Query: 283 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 342
+++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 289 ESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIP 348
Query: 343 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 402
++ + F GK L+ ++N DEA+A GAA AI S ++ D+ P S+
Sbjct: 349 TLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDIHPYSVSYS 405
Query: 403 TAGGV----MSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFD 458
V ++ + P + T D A + T + + ++
Sbjct: 406 WDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWE 463
Query: 459 LTGI--PPAPRGVPKIDVTFDLDANGILNV----------TAKDTSSGKSQNITIKNDKG 506
+TG+ P VP + + D +G+ + DT + K ++TI
Sbjct: 464 ITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTF 522
Query: 507 RLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSR 565
L ++++ +I +D+ E +N LE Y++ ++ L + +++EK++
Sbjct: 523 GLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTK 582
Query: 566 CREECDATLKWL-DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDA 624
+ + +WL D + K +Y K ++L + + + +
Sbjct: 583 LQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEAS 642
Query: 625 AKNQVA 630
+A
Sbjct: 643 QMAAMA 648
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 997 bits (2580), Expect = 0.0
Identities = 166/605 (27%), Positives = 287/605 (47%), Gaps = 31/605 (5%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGER 1477
+ KN+ N KNTV + KR+IG + P +Q+ KH+ +V D K +V F GE+
Sbjct: 51 ETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEK 110
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +R
Sbjct: 111 HVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVR 170
Query: 1538 IVNEPTAAALAYGLDKNL-----KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 1592
IVN+ TAA ++YG+ K + R V D+G ++ SI++ +G +V TA D
Sbjct: 171 IVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG-QLKVLGTACD 229
Query: 1593 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 1652
H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A ++
Sbjct: 230 KHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 289
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 290 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 349
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 1772
++ + F GK L+ ++N DEA+A GAA AI S ++ D+ P S+
Sbjct: 350 LKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDIHPYSVSYSW 406
Query: 1773 AGGV----MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDL 1828
V ++ + P + T D A + T + + +++
Sbjct: 407 DKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEI 464
Query: 1829 TGI--PPAPRGVPKIDVTFDLDANGILNV----------TAKDTSSGKSQNITIKNDKGR 1876
TG+ P VP + + D +G+ + DT + K ++TI
Sbjct: 465 TGVQLPEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFG 523
Query: 1877 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSRC 1935
L ++++ +I +D+ E +N LE Y++ ++ L + +++EK++
Sbjct: 524 LDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKL 583
Query: 1936 REECDATLKWL-DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAA 1994
+ + +WL D + K +Y K ++L + + + +
Sbjct: 584 QGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQ 643
Query: 1995 KNQVA 1999
+A
Sbjct: 644 MAAMA 648
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 996 bits (2578), Expect = 0.0
Identities = 166/589 (28%), Positives = 284/589 (48%), Gaps = 31/589 (5%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 2049
G+ KN+ N KNTV + KR+IG + P +Q+ KH+ +V D K +V F GE
Sbjct: 50 GETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGE 109
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +
Sbjct: 110 KHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPV 169
Query: 2110 RIVNEPTAAALAYGLDKNL-----KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 2164
RIVN+ TAA ++YG+ K + R V D+G ++ SI++ +G +V TA
Sbjct: 170 RIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG-QLKVLGTAC 228
Query: 2165 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224
D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A +
Sbjct: 229 DKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSV 288
Query: 2225 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 2284
+++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 289 ESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIP 348
Query: 2285 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 2344
++ + F GK L+ ++N DEA+A GAA AI S ++ D+ P S+
Sbjct: 349 TLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDIHPYSVSYS 405
Query: 2345 TAGGV----MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFD 2400
V ++ + P + T D A + T + + ++
Sbjct: 406 WDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWE 463
Query: 2401 LTGI--PPAPRGVPKIDVTFDLDANGILNV----------TAKDTSSGKSQNITIKNDKG 2448
+TG+ P VP + + D +G+ + DT + K ++TI
Sbjct: 464 ITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTF 522
Query: 2449 RLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSR 2507
L ++++ +I +D+ E +N LE Y++ ++ L + +++EK++
Sbjct: 523 GLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTK 582
Query: 2508 CREECDATLKWL-DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGASAG 2555
+ + +WL D + K +Y K ++L + +
Sbjct: 583 LQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEK 631
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 341 bits (878), Expect = e-101
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 23/243 (9%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV-- 1255
F GK L+ ++N DEA+A GAA AI S ++ D+ P S+ V
Sbjct: 356 EAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDIHPYSVSYSWDKQVED 412
Query: 1256 --MSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI--P 1311
++ + P + T D A + T + + +++TG+ P
Sbjct: 413 EDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLP 470
Query: 1312 PAPRGVPKIDVTFDLDANGILNV----------TAKDTSSGKSQNITIKNDKGRLSKEEI 1361
VP + + D +G+ + DT + K ++TI L +++
Sbjct: 471 EGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKL 529
Query: 1362 DRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSRCREECDA 1420
+ +I +D+ E +N LE Y++ ++ L + +++EK++ + +
Sbjct: 530 NELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNK 589
Query: 1421 AKN 1423
A+
Sbjct: 590 AEE 592
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 767 bits (1982), Expect = 0.0
Identities = 285/566 (50%), Positives = 372/566 (65%), Gaps = 20/566 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 51 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 108 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTH 798
I+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTH
Sbjct: 168 IINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 855
LGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYI 286
Query: 856 DALYDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914
A G K++RA+ E L DL +++P++ ALQDA L S I DV+LVGG TR+
Sbjct: 287 TADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRM 346
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 974
P VQ + FF GK +NPDEAVA GAAVQ +L+GD ++DVLL+DVTPLSLGI
Sbjct: 347 PMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGI 401
Query: 975 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 1034
ET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER DN LG F+L G
Sbjct: 402 ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDG 461
Query: 1035 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 1094
I PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L+++EI +M+ DAE
Sbjct: 462 INPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAE 520
Query: 1095 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 1154
+ D + E + RN + + + ++ ++ AG+KL +K+ A L
Sbjct: 521 ANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE- 579
Query: 1155 LADKEEYQDKLQQLQKSCMPLMSKMH 1180
DK + K+Q+L + LM
Sbjct: 580 --DKAAIEAKMQELAQVSQKLMEIAQ 603
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 767 bits (1982), Expect = 0.0
Identities = 285/566 (50%), Positives = 372/566 (65%), Gaps = 20/566 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 51 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 108 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTH 2167
I+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTH
Sbjct: 168 IINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 2224
LGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYI 286
Query: 2225 DALYDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 2283
A G K++RA+ E L DL +++P++ ALQDA L S I DV+LVGG TR+
Sbjct: 287 TADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRM 346
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 2343
P VQ + FF GK +NPDEAVA GAAVQ +L+GD ++DVLL+DVTPLSLGI
Sbjct: 347 PMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGI 401
Query: 2344 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 2403
ET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER DN LG F+L G
Sbjct: 402 ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDG 461
Query: 2404 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 2463
I PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L+++EI +M+ DAE
Sbjct: 462 INPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAE 520
Query: 2464 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 2523
+ D + E + RN + + + ++ ++ AG+KL +K+ A L
Sbjct: 521 ANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE- 579
Query: 2524 LADKEEYQDKLQQLQKSCMPLMSKMH 2549
DK + K+Q+L + LM
Sbjct: 580 --DKAAIEAKMQELAQVSQKLMEIAQ 603
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 764 bits (1975), Expect = 0.0
Identities = 284/565 (50%), Positives = 371/565 (65%), Gaps = 20/565 (3%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG +
Sbjct: 52 QPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--Q 108
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V RI
Sbjct: 109 KMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRI 168
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTHL 1595
+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHL
Sbjct: 169 INEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHL 227
Query: 1596 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---ID 1652
GGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 228 GGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYIT 287
Query: 1653 ALYDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 1711
A G K++RA+ E L DL +++P++ ALQDA L S I DV+LVGG TR+P
Sbjct: 288 ADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMP 347
Query: 1712 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 1771
VQ + FF GK +NPDEAVA GAAVQ +L+GD ++DVLL+DVTPLSLGIE
Sbjct: 348 MVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIE 402
Query: 1772 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 1831
T GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER DN LG F+L GI
Sbjct: 403 TMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGI 462
Query: 1832 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 1891
PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L+++EI +M+ DAE
Sbjct: 463 NPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEA 521
Query: 1892 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 1951
+ D + E + RN + + + ++ ++ AG+KL +K+ A L
Sbjct: 522 NAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE-- 579
Query: 1952 ADKEEYQDKLQQLQKSCMPLMSKMH 1976
DK + K+Q+L + LM
Sbjct: 580 -DKAAIEAKMQELAQVSQKLMEIAQ 603
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 764 bits (1974), Expect = 0.0
Identities = 284/566 (50%), Positives = 372/566 (65%), Gaps = 20/566 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 51 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 108 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTH 225
I+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTH
Sbjct: 168 IINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 226 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 282
LGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYI 286
Query: 283 DALYDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
A G K++RA+ E L DL +++P++ ALQDA L S I DV+LVGG TR+
Sbjct: 287 TADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRM 346
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 401
P VQ + FF GK +NPDEAVA GAAVQ +L+GD ++DVLL+DVTPLSLGI
Sbjct: 347 PMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGI 401
Query: 402 ETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 461
ET GGVM+ LI +NT IP K +Q F+T DNQ AVTI V +GER DN LG F+L G
Sbjct: 402 ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDG 461
Query: 462 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 521
I PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L+++EI +M+ DAE
Sbjct: 462 INPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAE 520
Query: 522 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 581
+ D + E + RN + + + ++ ++ AG+KL +K+ A L
Sbjct: 521 ANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE- 579
Query: 582 LADKEEYQDKLQQLQKSCMPLMSKMH 607
DK + K+Q+L + LM
Sbjct: 580 --DKAAIEAKMQELAQVSQKLMEIAQ 603
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 331 bits (850), Expect = 1e-98
Identities = 113/225 (50%), Positives = 152/225 (67%), Gaps = 6/225 (2%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
FF GK +NPDEAVA GAAVQ +L+GD ++DVLL+DVTPLSLGIET GGVM+
Sbjct: 355 EFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMT 409
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
LI +NT IP K +Q F+T DNQ AVTI V +GER DN LG F+L GI PAPRG+
Sbjct: 410 TLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 469
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1377
P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L+++EI +M+ DAE + D +
Sbjct: 470 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRK 528
Query: 1378 QKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAK 1422
E + RN + + + ++ ++ AG+KL +K+ A +
Sbjct: 529 FDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALE 573
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 737 bits (1906), Expect = 0.0
Identities = 269/347 (77%), Positives = 302/347 (87%), Gaps = 11/347 (3%)
Query: 45 SY--FT------GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS 96
SY FT GDAAKNQVAMNP NT+FDAKRLIGRKF+D +Q DMKHWPF VV++
Sbjct: 59 SYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGG 118
Query: 97 KPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATK 156
KPK+QVE+KGE KTF PEEISSMVLTKMKE AEAYLG V AVITVPAYFND+QRQATK
Sbjct: 119 KPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATK 178
Query: 157 DAGAIAGLNVMRIVNEPTAAALAYGLDK--NLKGERNVLIFDLGGGTFDVSILSIDEGAL 214
DAG I GLNV+RI+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVSIL+I++G +
Sbjct: 179 DAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-I 237
Query: 215 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 274
FEV+STAGDTHLGGEDFDNR+VSHLAEEFKRK+KKD+ N RA+RRLRTA ERAKRTLSS
Sbjct: 238 FEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSS 297
Query: 275 STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVL 334
ST+ASIEID+LY+G+DFYT I+RARFEEL +DLFR TL+PVEKAL+DAKLDK I ++VL
Sbjct: 298 STQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVL 357
Query: 335 VGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381
VGGSTRIPK+Q LLQ+FF GK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 358 VGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 737 bits (1905), Expect = 0.0
Identities = 265/335 (79%), Positives = 298/335 (88%), Gaps = 3/335 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP NT+FDAKRLIGRKF+D +Q DMKHWPF VV++ KPK+QVE+KGE
Sbjct: 71 GDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGET 130
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTF PEEISSMVLTKMKE AEAYLG V AVITVPAYFND+QRQATKDAG I GLNV+R
Sbjct: 131 KTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLR 190
Query: 742 IVNEPTAAALAYGLDK--NLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 799
I+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHL
Sbjct: 191 IINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHL 249
Query: 800 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 859
GGEDFDNR+VSHLAEEFKRK+KKD+ N RA+RRLRTA ERAKRTLSSST+ASIEID+LY
Sbjct: 250 GGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLY 309
Query: 860 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 919
+G+DFYT I+RARFEEL +DLFR TL+PVEKAL+DAKLDK I ++VLVGGSTRIPK+Q
Sbjct: 310 EGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQK 369
Query: 920 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 954
LLQ+FF GK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 370 LLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 737 bits (1905), Expect = 0.0
Identities = 265/335 (79%), Positives = 298/335 (88%), Gaps = 3/335 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NT+FDAKRLIGRKF+D +Q DMKHWPF VV++ KPK+QVE+KGE
Sbjct: 71 GDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGET 130
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTF PEEISSMVLTKMKE AEAYLG V AVITVPAYFND+QRQATKDAG I GLNV+R
Sbjct: 131 KTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLR 190
Query: 2111 IVNEPTAAALAYGLDK--NLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 2168
I+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHL
Sbjct: 191 IINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHL 249
Query: 2169 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 2228
GGEDFDNR+VSHLAEEFKRK+KKD+ N RA+RRLRTA ERAKRTLSSST+ASIEID+LY
Sbjct: 250 GGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLY 309
Query: 2229 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 2288
+G+DFYT I+RARFEEL +DLFR TL+PVEKAL+DAKLDK I ++VLVGGSTRIPK+Q
Sbjct: 310 EGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQK 369
Query: 2289 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 2323
LLQ+FF GK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 370 LLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 734 bits (1898), Expect = 0.0
Identities = 264/334 (79%), Positives = 297/334 (88%), Gaps = 3/334 (0%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
DAAKNQVAMNP NT+FDAKRLIGRKF+D +Q DMKHWPF VV++ KPK+QVE+KGE K
Sbjct: 72 DAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETK 131
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
TF PEEISSMVLTKMKE AEAYLG V AVITVPAYFND+QRQATKDAG I GLNV+RI
Sbjct: 132 TFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRI 191
Query: 1539 VNEPTAAALAYGLDK--NLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 1596
+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHLG
Sbjct: 192 INEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLG 250
Query: 1597 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 1656
GEDFDNR+VSHLAEEFKRK+KKD+ N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+
Sbjct: 251 GEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYE 310
Query: 1657 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
G+DFYT I+RARFEEL +DLFR TL+PVEKAL+DAKLDK I ++VLVGGSTRIPK+Q L
Sbjct: 311 GVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKL 370
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 1750
LQ+FF GK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 371 LQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 3e-14
Identities = 27/32 (84%), Positives = 28/32 (87%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 1229
+FF GK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 373 DFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 702 bits (1815), Expect = 0.0
Identities = 255/497 (51%), Positives = 334/497 (67%), Gaps = 41/497 (8%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G+ AK Q NP NT+ KR +G + +VE +G
Sbjct: 50 GEVAKRQAITNP-NTIISIKRHMGTDY-------------------------KVEIEG-- 81
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + P+EIS+++L +K AE YLG V AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 82 KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVER 141
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDK + ++ +L++DLGGGTFDVSIL + +G +FEV++TAGD HLGG
Sbjct: 142 IINEPTAAALAYGLDK--EEDQTILVYDLGGGTFDVSILELGDG-VFEVKATAGDNHLGG 198
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD ++ +L +FK+++ D+S + AL+RL+ AAE+AK+ LS T+ I I A
Sbjct: 199 DDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISAN 258
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
+G + ++RA+FEEL + L T+ PV +ALQDA L + I V+LVGGSTRIP V
Sbjct: 259 ENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAV 318
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q ++ GK + +NPDE VA GAA+Q +++G+ ++DV+L+DVTPLSLGIET
Sbjct: 319 QEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETM 373
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGV TKLIERNT IP ++Q FTT ADNQ V I V +GER M DN LG F LTGIPP
Sbjct: 374 GGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPP 433
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGI++V AKD + K Q+ITIK+ G LS+EEI RMI +AE
Sbjct: 434 APRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENA 492
Query: 1098 DEDERQKERISARNNLE 1114
+ D ++KE RN +
Sbjct: 493 EADRKRKEAAELRNEAD 509
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 702 bits (1815), Expect = 0.0
Identities = 255/497 (51%), Positives = 334/497 (67%), Gaps = 41/497 (8%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G+ AK Q NP NT+ KR +G + +VE +G
Sbjct: 50 GEVAKRQAITNP-NTIISIKRHMGTDY-------------------------KVEIEG-- 81
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + P+EIS+++L +K AE YLG V AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 82 KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVER 141
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDK + ++ +L++DLGGGTFDVSIL + +G +FEV++TAGD HLGG
Sbjct: 142 IINEPTAAALAYGLDK--EEDQTILVYDLGGGTFDVSILELGDG-VFEVKATAGDNHLGG 198
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD ++ +L +FK+++ D+S + AL+RL+ AAE+AK+ LS T+ I I A
Sbjct: 199 DDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISAN 258
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
+G + ++RA+FEEL + L T+ PV +ALQDA L + I V+LVGGSTRIP V
Sbjct: 259 ENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAV 318
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q ++ GK + +NPDE VA GAA+Q +++G+ ++DV+L+DVTPLSLGIET
Sbjct: 319 QEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETM 373
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGV TKLIERNT IP ++Q FTT ADNQ V I V +GER M DN LG F LTGIPP
Sbjct: 374 GGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPP 433
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGI++V AKD + K Q+ITIK+ G LS+EEI RMI +AE
Sbjct: 434 APRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENA 492
Query: 2467 DEDERQKERISARNNLE 2483
+ D ++KE RN +
Sbjct: 493 EADRKRKEAAELRNEAD 509
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 254/496 (51%), Positives = 333/496 (67%), Gaps = 41/496 (8%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
+ AK Q NP NT+ KR +G + +VE +G K
Sbjct: 51 EVAKRQAITNP-NTIISIKRHMGTDY-------------------------KVEIEG--K 82
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P+EIS+++L +K AE YLG V AVITVPAYFNDAQRQATKDAG IAGL V RI
Sbjct: 83 QYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERI 142
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK + ++ +L++DLGGGTFDVSIL + +G +FEV++TAGD HLGG+
Sbjct: 143 INEPTAAALAYGLDK--EEDQTILVYDLGGGTFDVSILELGDG-VFEVKATAGDNHLGGD 199
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALY 1655
DFD ++ +L +FK+++ D+S + AL+RL+ AAE+AK+ LS T+ I I A
Sbjct: 200 DFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANE 259
Query: 1656 DG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
+G + ++RA+FEEL + L T+ PV +ALQDA L + I V+LVGGSTRIP VQ
Sbjct: 260 NGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQ 319
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
++ GK + +NPDE VA GAA+Q +++G+ ++DV+L+DVTPLSLGIET G
Sbjct: 320 EAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMG 374
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GV TKLIERNT IP ++Q FTT ADNQ V I V +GER M DN LG F LTGIPPA
Sbjct: 375 GVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPA 434
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP+I+VTFD+DANGI++V AKD + K Q+ITIK+ G LS+EEI RMI +AE +
Sbjct: 435 PRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAE 493
Query: 1895 EDERQKERISARNNLE 1910
D ++KE RN +
Sbjct: 494 ADRKRKEAAELRNEAD 509
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 254/497 (51%), Positives = 334/497 (67%), Gaps = 41/497 (8%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G+ AK Q NP NT+ KR +G + +VE +G
Sbjct: 50 GEVAKRQAITNP-NTIISIKRHMGTDY-------------------------KVEIEG-- 81
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + P+EIS+++L +K AE YLG V AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 82 KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVER 141
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLDK + ++ +L++DLGGGTFDVSIL + +G +FEV++TAGD HLGG
Sbjct: 142 IINEPTAAALAYGLDK--EEDQTILVYDLGGGTFDVSILELGDG-VFEVKATAGDNHLGG 198
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD ++ +L +FK+++ D+S + AL+RL+ AAE+AK+ LS T+ I I A
Sbjct: 199 DDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISAN 258
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
+G + ++RA+FEEL + L T+ PV +ALQDA L + I V+LVGGSTRIP V
Sbjct: 259 ENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAV 318
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q ++ GK + +NPDE VA GAA+Q +++G+ ++DV+L+DVTPLSLGIET
Sbjct: 319 QEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETM 373
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGV +KLIERNT IP ++Q FTT ADNQ V I V +GER M DN LG F LTGIPP
Sbjct: 374 GGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPP 433
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGI++V AKD + K Q+ITIK+ G LS+EEI RMI +AE
Sbjct: 434 APRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENA 492
Query: 525 DEDERQKERISARNNLE 541
+ D ++KE RN +
Sbjct: 493 EADRKRKEAAELRNEAD 509
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 312 bits (802), Expect = 2e-93
Identities = 107/190 (56%), Positives = 136/190 (71%), Gaps = 5/190 (2%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
GK + +NPDE VA GAA+Q +++G+ ++DV+L+DVTPLSLGIET GGV +KL
Sbjct: 325 ELGKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKL 380
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
IERNT IP ++Q FTT ADNQ V I V +GER M DN LG F LTGIPPAPRGVP+
Sbjct: 381 IERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQ 440
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
I+VTFD+DANGI++V AKD + K Q+ITIK+ G LS+EEI RMI +AE + D ++K
Sbjct: 441 IEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRKRK 499
Query: 1380 ERISARNNLE 1389
E RN +
Sbjct: 500 EAAELRNEAD 509
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-154
Identities = 179/340 (52%), Positives = 230/340 (67%), Gaps = 16/340 (4%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 51 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 108 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTH 225
I+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTH
Sbjct: 168 IINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 226 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 282
LGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYI 286
Query: 283 DALYDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 339
A G ++ K++RA+ E L DL +++ ++ ALQDA L S I DV+LVGG T
Sbjct: 287 TADATGPKHMN--IKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQT 344
Query: 340 RIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
R+P VQ + FF GK +NPDEAVA GAAVQ +L+
Sbjct: 345 RMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-154
Identities = 179/340 (52%), Positives = 230/340 (67%), Gaps = 16/340 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 51 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 108 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTH 798
I+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTH
Sbjct: 168 IINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 855
LGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYI 286
Query: 856 DALYDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 912
A G ++ K++RA+ E L DL +++ ++ ALQDA L S I DV+LVGG T
Sbjct: 287 TADATGPKHMN--IKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQT 344
Query: 913 RIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
R+P VQ + FF GK +NPDEAVA GAAVQ +L+
Sbjct: 345 RMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-154
Identities = 179/340 (52%), Positives = 230/340 (67%), Gaps = 16/340 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 51 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 108 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTH 2167
I+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTH
Sbjct: 168 IINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 2224
LGGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYI 286
Query: 2225 DALYDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 2281
A G ++ K++RA+ E L DL +++ ++ ALQDA L S I DV+LVGG T
Sbjct: 287 TADATGPKHMN--IKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQT 344
Query: 2282 RIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
R+P VQ + FF GK +NPDEAVA GAAVQ +L+
Sbjct: 345 RMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 480 bits (1238), Expect = e-153
Identities = 178/339 (52%), Positives = 229/339 (67%), Gaps = 16/339 (4%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG +
Sbjct: 52 QPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--Q 108
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V RI
Sbjct: 109 KMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRI 168
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTHL 1595
+NEPTAAALAYGLDK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHL
Sbjct: 169 INEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHL 227
Query: 1596 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---ID 1652
GGEDFD+RL+++L EEFK+ D+ +P A++RL+ AAE+AK LSS+ + + I
Sbjct: 228 GGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYIT 287
Query: 1653 ALYDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 1709
A G ++ K++RA+ E L DL +++ ++ ALQDA L S I DV+LVGG TR
Sbjct: 288 ADATGPKHMN--IKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTR 345
Query: 1710 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
+P VQ + FF GK +NPDEAVA GAAVQ +L+
Sbjct: 346 MPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-05
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILS 1227
FF GK +NPDEAVA GAAVQ +L+
Sbjct: 355 EFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 330 bits (848), Expect = e-105
Identities = 104/149 (69%), Positives = 133/149 (89%)
Query: 966 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1025
DV PLSLGIETAGGVMT LI+RNTRIP K +TFTTYADNQP V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 1026 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1085
LGTF+L+GIPPAPRGVP+I+VTF++DANGILNV+A+D S+GKS ITI+N+KGRL++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 1086 IDRMINDAERYKDEDERQKERISARNNLE 1114
IDRM+++A++++ ED Q+ER+ ARN LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 330 bits (848), Expect = e-105
Identities = 104/149 (69%), Positives = 133/149 (89%)
Query: 1762 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1821
DV PLSLGIETAGGVMT LI+RNTRIP K +TFTTYADNQP V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 1822 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1881
LGTF+L+GIPPAPRGVP+I+VTF++DANGILNV+A+D S+GKS ITI+N+KGRL++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 1882 IDRMINDAERYKDEDERQKERISARNNLE 1910
IDRM+++A++++ ED Q+ER+ ARN LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 330 bits (848), Expect = e-105
Identities = 104/149 (69%), Positives = 133/149 (89%)
Query: 2335 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 2394
DV PLSLGIETAGGVMT LI+RNTRIP K +TFTTYADNQP V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 2395 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 2454
LGTF+L+GIPPAPRGVP+I+VTF++DANGILNV+A+D S+GKS ITI+N+KGRL++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 2455 IDRMINDAERYKDEDERQKERISARNNLE 2483
IDRM+++A++++ ED Q+ER+ ARN LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 328 bits (842), Expect = e-104
Identities = 103/149 (69%), Positives = 133/149 (89%)
Query: 393 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 452
DV PLSLGIETAGGVM+ LI+RNTRIP K +TFTTYADNQP V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 453 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 512
LGTF+L+GIPPAPRGVP+I+VTF++DANGILNV+A+D S+GKS ITI+N+KGRL++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 513 IDRMINDAERYKDEDERQKERISARNNLE 541
IDRM+++A++++ ED Q+ER+ ARN LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 328 bits (842), Expect = e-104
Identities = 103/149 (69%), Positives = 133/149 (89%)
Query: 1241 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1300
DV PLSLGIETAGGVM+ LI+RNTRIP K +TFTTYADNQP V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 1301 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1360
LGTF+L+GIPPAPRGVP+I+VTF++DANGILNV+A+D S+GKS ITI+N+KGRL++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 1361 IDRMINDAERYKDEDERQKERISARNNLE 1389
IDRM+++A++++ ED Q+ER+ ARN LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 329 bits (847), Expect = e-104
Identities = 98/149 (65%), Positives = 122/149 (81%)
Query: 966 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1025
DV L+LGIET GGVMT LI+RNT IP K++Q F+T DNQP V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 1026 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1085
LLG F+LTGIPPAPRGVP+I+VTF LDANGIL V+A D +GKS++ITI NDKGRL++EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 1086 IDRMINDAERYKDEDERQKERISARNNLE 1114
IDRM+ +AE++ ED K ++ +RN LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 329 bits (847), Expect = e-104
Identities = 98/149 (65%), Positives = 122/149 (81%)
Query: 1762 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1821
DV L+LGIET GGVMT LI+RNT IP K++Q F+T DNQP V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 1822 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1881
LLG F+LTGIPPAPRGVP+I+VTF LDANGIL V+A D +GKS++ITI NDKGRL++EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 1882 IDRMINDAERYKDEDERQKERISARNNLE 1910
IDRM+ +AE++ ED K ++ +RN LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 329 bits (847), Expect = e-104
Identities = 98/149 (65%), Positives = 122/149 (81%)
Query: 2335 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 2394
DV L+LGIET GGVMT LI+RNT IP K++Q F+T DNQP V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 2395 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 2454
LLG F+LTGIPPAPRGVP+I+VTF LDANGIL V+A D +GKS++ITI NDKGRL++EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 2455 IDRMINDAERYKDEDERQKERISARNNLE 2483
IDRM+ +AE++ ED K ++ +RN LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-104
Identities = 97/149 (65%), Positives = 122/149 (81%)
Query: 393 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 452
DV L+LGIET GGVM+ LI+RNT IP K++Q F+T DNQP V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 453 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 512
LLG F+LTGIPPAPRGVP+I+VTF LDANGIL V+A D +GKS++ITI NDKGRL++EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 513 IDRMINDAERYKDEDERQKERISARNNLE 541
IDRM+ +AE++ ED K ++ +RN LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-104
Identities = 97/149 (65%), Positives = 122/149 (81%)
Query: 1241 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1300
DV L+LGIET GGVM+ LI+RNT IP K++Q F+T DNQP V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 1301 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1360
LLG F+LTGIPPAPRGVP+I+VTF LDANGIL V+A D +GKS++ITI NDKGRL++EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 1361 IDRMINDAERYKDEDERQKERISARNNLE 1389
IDRM+ +AE++ ED K ++ +RN LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-103
Identities = 90/149 (60%), Positives = 119/149 (79%)
Query: 966 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1025
DV PL+LGIET GGVMTKLI RNT IP K++Q F+T AD+Q AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 1026 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1085
LG FD+TGIPPAPRGVP+I+VTF++D NGIL+V+A+D +G +TI ND RLS E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 1086 IDRMINDAERYKDEDERQKERISARNNLE 1114
I+RMINDA+++ +D+ QKE++ +RN LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-103
Identities = 90/149 (60%), Positives = 119/149 (79%)
Query: 1762 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1821
DV PL+LGIET GGVMTKLI RNT IP K++Q F+T AD+Q AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 1822 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1881
LG FD+TGIPPAPRGVP+I+VTF++D NGIL+V+A+D +G +TI ND RLS E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 1882 IDRMINDAERYKDEDERQKERISARNNLE 1910
I+RMINDA+++ +D+ QKE++ +RN LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-103
Identities = 90/149 (60%), Positives = 119/149 (79%)
Query: 2335 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 2394
DV PL+LGIET GGVMTKLI RNT IP K++Q F+T AD+Q AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 2395 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 2454
LG FD+TGIPPAPRGVP+I+VTF++D NGIL+V+A+D +G +TI ND RLS E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 2455 IDRMINDAERYKDEDERQKERISARNNLE 2483
I+RMINDA+++ +D+ QKE++ +RN LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 324 bits (832), Expect = e-102
Identities = 89/149 (59%), Positives = 119/149 (79%)
Query: 393 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 452
DV PL+LGIET GGVM+KLI RNT IP K++Q F+T AD+Q AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 453 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 512
LG FD+TGIPPAPRGVP+I+VTF++D NGIL+V+A+D +G +TI ND RLS E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 513 IDRMINDAERYKDEDERQKERISARNNLE 541
I+RMINDA+++ +D+ QKE++ +RN LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 324 bits (832), Expect = e-102
Identities = 89/149 (59%), Positives = 119/149 (79%)
Query: 1241 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1300
DV PL+LGIET GGVM+KLI RNT IP K++Q F+T AD+Q AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 1301 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1360
LG FD+TGIPPAPRGVP+I+VTF++D NGIL+V+A+D +G +TI ND RLS E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 1361 IDRMINDAERYKDEDERQKERISARNNLE 1389
I+RMINDA+++ +D+ QKE++ +RN LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 1e-92
Identities = 102/223 (45%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
Query: 962 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 1021
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 1022 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRL 1081
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 1082 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 1141
+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 1142 ECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 1184
A L DK + K+Q+L + LM
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 1e-92
Identities = 102/223 (45%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
Query: 1758 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 1817
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 1818 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRL 1877
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 1878 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 1937
+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 1938 ECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 1980
A L DK + K+Q+L + LM
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 297 bits (764), Expect = 2e-92
Identities = 102/223 (45%), Positives = 140/223 (62%), Gaps = 4/223 (1%)
Query: 2331 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 2390
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 2391 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRL 2450
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 2451 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 2510
+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 2511 ECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAS 2553
A L DK + K+Q+L + LM +
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 295 bits (757), Expect = 1e-91
Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
Query: 389 VLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 448
VLL+DVTPLSLGIET GGVM+ LI +NT IP K +Q F+T DNQ AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 449 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRL 508
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 509 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 568
+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 569 ECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 611
A L DK + K+Q+L + LM
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 5e-88
Identities = 93/186 (50%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
Query: 1237 VLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 1296
VLL+DVTPLSLGIET GGVM+ LI +NT IP K +Q F+T DNQ AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 1297 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRL 1356
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 1357 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 1416
+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 1417 ECDAAK 1422
A +
Sbjct: 180 ALTALE 185
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 1e-88
Identities = 91/179 (50%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 947 QAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQ 1006
L + +DVTPLSLGIET GGV TKLI RNT IP K++Q F+T AD Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 1007 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSS 1066
V I+V +GER M DN LLG F L GIPPAPRGVP+I+VTFD+DANGI++V+AKD +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 1067 GKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 1125
G+ Q I I++ G LSK++I+ M+ +AE+Y +ED R+KER+ A N E + + + ++
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 1e-88
Identities = 91/179 (50%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 1743 QAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQ 1802
L + +DVTPLSLGIET GGV TKLI RNT IP K++Q F+T AD Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 1803 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSS 1862
V I+V +GER M DN LLG F L GIPPAPRGVP+I+VTFD+DANGI++V+AKD +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 1863 GKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 1921
G+ Q I I++ G LSK++I+ M+ +AE+Y +ED R+KER+ A N E + + + ++
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 1e-88
Identities = 91/179 (50%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 2316 QAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQ 2375
L + +DVTPLSLGIET GGV TKLI RNT IP K++Q F+T AD Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 2376 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSS 2435
V I+V +GER M DN LLG F L GIPPAPRGVP+I+VTFD+DANGI++V+AKD +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 2436 GKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 2494
G+ Q I I++ G LSK++I+ M+ +AE+Y +ED R+KER+ A N E + + + ++
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 1e-87
Identities = 90/179 (50%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 374 QAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQ 433
L + +DVTPLSLGIET GGV +KLI RNT IP K++Q F+T AD Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 434 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSS 493
V I+V +GER M DN LLG F L GIPPAPRGVP+I+VTFD+DANGI++V+AKD +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 494 GKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 552
G+ Q I I++ G LSK++I+ M+ +AE+Y +ED R+KER+ A N E + + + ++
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 1e-87
Identities = 90/179 (50%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 1222 QAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQ 1281
L + +DVTPLSLGIET GGV +KLI RNT IP K++Q F+T AD Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 1282 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSS 1341
V I+V +GER M DN LLG F L GIPPAPRGVP+I+VTFD+DANGI++V+AKD +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 1342 GKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALD 1400
G+ Q I I++ G LSK++I+ M+ +AE+Y +ED R+KER+ A N E + + + ++
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 277 bits (712), Expect = 2e-85
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%)
Query: 966 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1025
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 1026 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1085
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G L+ E
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 1086 IDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDA 1145
I MI D+ Y ++D + + + + ++ AL L+ +E+ +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 1146 TLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSK-MHGGAGGASAG 1189
+ + D + + ++ + K ++ M A G
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 222
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 277 bits (712), Expect = 2e-85
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%)
Query: 1762 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1821
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 1822 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1881
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G L+ E
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 1882 IDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDA 1941
I MI D+ Y ++D + + + + ++ AL L+ +E+ +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 1942 TLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSK-MHGGAGGASAG 1985
+ + D + + ++ + K ++ M A G
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 222
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 277 bits (712), Expect = 2e-85
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 4/214 (1%)
Query: 2335 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 2394
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 2395 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 2454
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G L+ E
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 2455 IDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDA 2514
I MI D+ Y ++D + + + + ++ AL L+ +E+ +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 2515 TLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKM 2548
+ + D + + ++ + K ++
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARR 211
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 2e-84
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%)
Query: 393 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 452
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 453 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 512
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G L+ E
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 513 IDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDA 572
I MI D+ Y ++D + + + + ++ AL L+ +E+ +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 573 TLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSK-MHGGAGGASAG 616
+ + D + + ++ + K ++ M A G
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 222
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 1e-81
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 1/186 (0%)
Query: 1241 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1300
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 1301 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1360
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G L+ E
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 1361 IDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDA 1420
I MI D+ Y ++D + + + + ++ AL L+ +E+ +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 1421 AKNQVA 1426
Sbjct: 181 LSEVAQ 186
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 6e-79
Identities = 87/149 (58%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 966 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1025
DVTPLSLGIET GG+MTKLI RNT IP K++Q F+T AD Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 1026 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1085
LLG F L GIPPAPRGVP+++VTFD+DANGI+NV+A+D +GK Q I I++ G LSK++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 1086 IDRMINDAERYKDEDERQKERISARNNLE 1114
I+ MI +AE+ ED ++KE + N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 6e-79
Identities = 87/149 (58%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 1762 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1821
DVTPLSLGIET GG+MTKLI RNT IP K++Q F+T AD Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 1822 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1881
LLG F L GIPPAPRGVP+++VTFD+DANGI+NV+A+D +GK Q I I++ G LSK++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 1882 IDRMINDAERYKDEDERQKERISARNNLE 1910
I+ MI +AE+ ED ++KE + N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 6e-79
Identities = 87/149 (58%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 2335 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 2394
DVTPLSLGIET GG+MTKLI RNT IP K++Q F+T AD Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 2395 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 2454
LLG F L GIPPAPRGVP+++VTFD+DANGI+NV+A+D +GK Q I I++ G LSK++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 2455 IDRMINDAERYKDEDERQKERISARNNLE 2483
I+ MI +AE+ ED ++KE + N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 5e-78
Identities = 86/149 (57%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 393 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 452
DVTPLSLGIET GG+M+KLI RNT IP K++Q F+T AD Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 453 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 512
LLG F L GIPPAPRGVP+++VTFD+DANGI+NV+A+D +GK Q I I++ G LSK++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 513 IDRMINDAERYKDEDERQKERISARNNLE 541
I+ MI +AE+ ED ++KE + N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 5e-78
Identities = 86/149 (57%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 1241 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1300
DVTPLSLGIET GG+M+KLI RNT IP K++Q F+T AD Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 1301 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 1360
LLG F L GIPPAPRGVP+++VTFD+DANGI+NV+A+D +GK Q I I++ G LSK++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 1361 IDRMINDAERYKDEDERQKERISARNNLE 1389
I+ MI +AE+ ED ++KE + N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 4e-69
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 948 AAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQP 1007
++ + +VDVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 1008 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSG 1067
AVTI V +GER DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SG
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 1068 KSQNITIKNDKG 1079
K Q ITIK G
Sbjct: 123 KEQKITIKASSG 134
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 4e-69
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 1744 AAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQP 1803
++ + +VDVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 1804 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSG 1863
AVTI V +GER DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SG
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 1864 KSQNITIKNDKG 1875
K Q ITIK G
Sbjct: 123 KEQKITIKASSG 134
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 4e-69
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 2317 AAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQP 2376
++ + +VDVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 2377 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSG 2436
AVTI V +GER DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SG
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 2437 KSQNITIKNDKG 2448
K Q ITIK G
Sbjct: 123 KEQKITIKASSG 134
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 3e-68
Identities = 74/132 (56%), Positives = 92/132 (69%)
Query: 375 AAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQP 434
++ + +VDVTPLSLGIET GGVM+ LI +NT IP K +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 435 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSG 494
AVTI V +GER DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SG
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 495 KSQNITIKNDKG 506
K Q ITIK G
Sbjct: 123 KEQKITIKASSG 134
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 3e-68
Identities = 74/132 (56%), Positives = 92/132 (69%)
Query: 1223 AAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQP 1282
++ + +VDVTPLSLGIET GGVM+ LI +NT IP K +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 1283 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSG 1342
AVTI V +GER DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SG
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 1343 KSQNITIKNDKG 1354
K Q ITIK G
Sbjct: 123 KEQKITIKASSG 134
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-33
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 2462 AERYKDEDERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWL 2519
+ + + LE+Y FN+KQ + + +K++ +K + ++CD LKWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 2520 DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRG---------GPTVEEVD 2568
D+N A+KEE++ + + L+ P++SK++ A GPT+EEVD
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGGAGGPTIEEVD 120
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-31
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 1093 AERYKDEDERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWL 1150
+ + + LE+Y FN+KQ + + +K++ +K + ++CD LKWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 1151 DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTN 1198
D+N A+KEE++ + + L+ P++SK++ AGGA G P G
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGG 110
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-31
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 520 AERYKDEDERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWL 577
+ + + LE+Y FN+KQ + + +K++ +K + ++CD LKWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 578 DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAA 625
D+N A+KEE++ + + L+ P++SK++ AGGA G P G
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGG 110
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-31
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 1889 AERYKDEDERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWL 1946
+ + + LE+Y FN+KQ + + +K++ +K + ++CD LKWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 1947 DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAA 1994
D+N A+KEE++ + + L+ P++SK++ AGGA G P G
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGG 110
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 5e-12
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 1368 AERYKDEDERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDAAKNQV 1425
+ + + LE+Y FN+KQ + + +K++ +K + ++CD +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 1426 AMNPKNT--VFDAKR 1438
N F+ ++
Sbjct: 63 DSNQTAEKEEFEHQQ 77
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-33
Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 59/261 (22%)
Query: 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 174
+ ++ ++K E LG + A +P +A A AGL ++ +V+EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 175 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 234
AAA A G++ + + D+GGGT ++++ + D GG
Sbjct: 131 AAARALGINDGI-------VVDIGGGTTGIAVIEKGKIT------ATFDEPTGGTHLSLV 177
Query: 235 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTK 294
L F+ AE K+ S E + +
Sbjct: 178 LAGSYKIPFE-------------------EAETIKKDFSRHREIMRVVRPV--------- 209
Query: 295 ISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG 354
++ + +++ + V +VGG+ + F G
Sbjct: 210 -----------------IEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-G 251
Query: 355 KSLNLSINPDEAVAYGAAVQA 375
K + + I+P G A+
Sbjct: 252 KEVQVPIHPLLVTPLGIALFG 272
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-33
Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 59/261 (22%)
Query: 688 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 747
+ ++ ++K E LG + A +P +A A AGL ++ +V+EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 748 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 807
AAA A G++ + + D+GGGT ++++ + D GG
Sbjct: 131 AAARALGINDGI-------VVDIGGGTTGIAVIEKGKIT------ATFDEPTGGTHLSLV 177
Query: 808 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTK 867
L F+ AE K+ S E + +
Sbjct: 178 LAGSYKIPFE-------------------EAETIKKDFSRHREIMRVVRPV--------- 209
Query: 868 ISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG 927
++ + +++ + V +VGG+ + F G
Sbjct: 210 -----------------IEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-G 251
Query: 928 KSLNLSINPDEAVAYGAAVQA 948
K + + I+P G A+
Sbjct: 252 KEVQVPIHPLLVTPLGIALFG 272
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-33
Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 59/261 (22%)
Query: 1484 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 1543
+ ++ ++K E LG + A +P +A A AGL ++ +V+EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 1544 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 1603
AAA A G++ + + D+GGGT ++++ + D GG
Sbjct: 131 AAARALGINDGI-------VVDIGGGTTGIAVIEKGKIT------ATFDEPTGGTHLSLV 177
Query: 1604 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTK 1663
L F+ AE K+ S E + +
Sbjct: 178 LAGSYKIPFE-------------------EAETIKKDFSRHREIMRVVRPV--------- 209
Query: 1664 ISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG 1723
++ + +++ + V +VGG+ + F G
Sbjct: 210 -----------------IEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-G 251
Query: 1724 KSLNLSINPDEAVAYGAAVQA 1744
K + + I+P G A+
Sbjct: 252 KEVQVPIHPLLVTPLGIALFG 272
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-33
Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 59/261 (22%)
Query: 2057 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 2116
+ ++ ++K E LG + A +P +A A AGL ++ +V+EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 2117 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 2176
AAA A G++ + + D+GGGT ++++ + D GG
Sbjct: 131 AAARALGINDGI-------VVDIGGGTTGIAVIEKGKIT------ATFDEPTGGTHLSLV 177
Query: 2177 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTK 2236
L F+ AE K+ S E + +
Sbjct: 178 LAGSYKIPFE-------------------EAETIKKDFSRHREIMRVVRPV--------- 209
Query: 2237 ISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG 2296
++ + +++ + V +VGG+ + F G
Sbjct: 210 -----------------IEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-G 251
Query: 2297 KSLNLSINPDEAVAYGAAVQA 2317
K + + I+P G A+
Sbjct: 252 KEVQVPIHPLLVTPLGIALFG 272
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-27
Identities = 40/110 (36%), Positives = 68/110 (61%), Gaps = 13/110 (11%)
Query: 2472 QKERISARNNLEAYVFNVKQALDNAGN--KLTESEKSRCREECDATLKWLDNNTLADKEE 2529
ER+SA+N LE+Y FN+K A+++ G K++E++K + ++C + WLD NTLA+K+E
Sbjct: 4 AAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDE 63
Query: 2530 YQDKLQQLQKSCMPLMSKMHGGASAGDMPRG-----------GPTVEEVD 2568
++ K ++L++ C P++S ++ GA GPT+EEVD
Sbjct: 64 FEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 38/98 (38%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 1103 QKERISARNNLEAYVFNVKQALDNAGN--KLTESEKSRCREECDATLKWLDNNTLADKEE 1160
ER+SA+N LE+Y FN+K A+++ G K++E++K + ++C + WLD NTLA+K+E
Sbjct: 4 AAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDE 63
Query: 1161 YQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTN 1198
++ K ++L++ C P++S ++ GAGG G GP
Sbjct: 64 FEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKG 101
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 530 QKERISARNNLEAYVFNVKQALDNAGN--KLTESEKSRCREECDATLKWLDNNTLADKEE 587
ER+SA+N LE+Y FN+K A+++ G K++E++K + ++C + WLD NTLA+K+E
Sbjct: 4 AAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDE 63
Query: 588 YQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAA 625
++ K ++L++ C P++S ++ GAGG G G
Sbjct: 64 FEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKG 101
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 1899 QKERISARNNLEAYVFNVKQALDNAGN--KLTESEKSRCREECDATLKWLDNNTLADKEE 1956
ER+SA+N LE+Y FN+K A+++ G K++E++K + ++C + WLD NTLA+K+E
Sbjct: 4 AAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDE 63
Query: 1957 YQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAA 1994
++ K ++L++ C P++S ++ GAGG G G
Sbjct: 64 FEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKG 101
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-07
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1378 QKERISARNNLEAYVFNVKQALDNAGN--KLTESEKSRCREECDAAKNQVAMNP 1429
ER+SA+N LE+Y FN+K A+++ G K++E++K + ++C + + N
Sbjct: 4 AAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANT 57
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 3e-24
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 2475 RISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQD 2532
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 2533 KLQQLQKSCMPLMSKMHGGASAGDMPRG----------------GPTVEEVD 2568
+ ++L+K C P+++K++ A GPT+EEVD
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 3e-22
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 533 RISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQD 590
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 591 KLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAA 625
+ ++L+K C P+++K++ AGG G
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGG 96
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 3e-22
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 1902 RISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQD 1959
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 1960 KLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAA 1994
+ ++L+K C P+++K++ AGG G
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGG 96
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 4e-22
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 1106 RISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQD 1163
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 1164 KLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPT 1197
+ ++L+K C P+++K++ AGG G
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGG 95
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 1381 RISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDAAKNQVAMNPKNT--VFDA 1436
+ LE+Y FN+K +++ K+ + +K + ++C+ + + N F+
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 1437 KR 1438
++
Sbjct: 62 QQ 63
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 36/249 (14%)
Query: 129 EAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKG 188
Y + + + + +++ T + G + ++++ E A + +
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD--E 162
Query: 189 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 248
++LI DLGG T D+S + G L + GD+ LG + + L+ +
Sbjct: 163 LDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK--- 216
Query: 249 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 308
SS A I D +I+ + ++
Sbjct: 217 ------------------------GSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAM 252
Query: 309 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF--CGKSLNLSINPDEA 366
L+ +E+ + + + S V+++GG + + ++ + + N
Sbjct: 253 NEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYD 310
Query: 367 VAYGAAVQA 375
+ G +
Sbjct: 311 LVNGMYLIG 319
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 36/249 (14%)
Query: 702 EAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKG 761
Y + + + + +++ T + G + ++++ E A + +
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD--E 162
Query: 762 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 821
++LI DLGG T D+S + G L + GD+ LG + + L+ +
Sbjct: 163 LDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK--- 216
Query: 822 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 881
SS A I D +I+ + ++
Sbjct: 217 ------------------------GSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAM 252
Query: 882 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF--CGKSLNLSINPDEA 939
L+ +E+ + + + S V+++GG + + ++ + + N
Sbjct: 253 NEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYD 310
Query: 940 VAYGAAVQA 948
+ G +
Sbjct: 311 LVNGMYLIG 319
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 36/249 (14%)
Query: 1498 EAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKG 1557
Y + + + + +++ T + G + ++++ E A + +
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD--E 162
Query: 1558 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 1617
++LI DLGG T D+S + G L + GD+ LG + + L+ +
Sbjct: 163 LDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK--- 216
Query: 1618 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 1677
SS A I D +I+ + ++
Sbjct: 217 ------------------------GSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAM 252
Query: 1678 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF--CGKSLNLSINPDEA 1735
L+ +E+ + + + S V+++GG + + ++ + + N
Sbjct: 253 NEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYD 310
Query: 1736 VAYGAAVQA 1744
+ G +
Sbjct: 311 LVNGMYLIG 319
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 36/249 (14%)
Query: 2071 EAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKG 2130
Y + + + + +++ T + G + ++++ E A + +
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD--E 162
Query: 2131 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 2190
++LI DLGG T D+S + G L + GD+ LG + + L+ +
Sbjct: 163 LDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK--- 216
Query: 2191 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 2250
SS A I D +I+ + ++
Sbjct: 217 ------------------------GSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAM 252
Query: 2251 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF--CGKSLNLSINPDEA 2308
L+ +E+ + + + S V+++GG + + ++ + + N
Sbjct: 253 NEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYD 310
Query: 2309 VAYGAAVQA 2317
+ G +
Sbjct: 311 LVNGMYLIG 319
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 91.5 bits (226), Expect = 3e-18
Identities = 101/768 (13%), Positives = 221/768 (28%), Gaps = 283/768 (36%)
Query: 1050 DLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK---ER 1106
+ D + ++ K LSKEEID +I KD
Sbjct: 32 NFDCKDVQDMP-----------------KSILSKEEIDHIIMS----KDAVSGTLRLFWT 70
Query: 1107 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLD--NNTLADKEEY--- 1161
+ ++ F V++ L L K+ R+ T +++ + D + +
Sbjct: 71 LLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 1162 ----QDKLQQLQKSCMPLMSK----MHGGAGGASAGDMPRGGPTNFFCGKS-LNLSINPD 1212
+L+++ + L + G G GK+ +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLG----------------SGKTWV------- 166
Query: 1213 EAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG-IETAGGVMSKLIERNTRIPCKQT 1271
A+ S +Q + + L+L + V+ L + +I
Sbjct: 167 -------ALDVC-----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----D 210
Query: 1272 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG------V--PKIDVT 1323
+T+ +D+ + +++ + LL + P V K
Sbjct: 211 PNWTSRSDHSSNIKLRI---HSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNA 261
Query: 1324 FDLDANGILNVTAKDTS------SGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED-- 1375
F+L IL +T + + + +I++ + L+ +E+ ++ + +D
Sbjct: 262 FNLSCK-IL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 1376 ---------------ERQKERISARNNLEAYVFN-VKQALDNAGNKLTESEKSRCREECD 1419
E ++ ++ +N + + + ++++ N L +E + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL- 378
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQD--MKHW-------PFTVVNDCSKPKIQ 1470
+VF I W VVN K
Sbjct: 379 ------------SVFP---------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---- 413
Query: 1471 VEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 1530
S+V + KE+ I++P+ + + + + +
Sbjct: 414 ---------------YSLVEKQPKES------------TISIPSIYLELKVKLENE---- 442
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 1590
L+ IV+ Y + K + D+ +D +
Sbjct: 443 YALH-RSIVD-------HYNIPKTFDSD-------------DLIPPYLD-QYFYS----- 475
Query: 1591 GDTHLGGEDFDNRLVSHLA--------EEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 1642
H+G HL F+ + ++ R L + + + +
Sbjct: 476 ---HIG---------HHLKNIEHPERMTLFRMVF-----LDFRFLEQ------KIRHDST 512
Query: 1643 SSTEASIEIDALYDGIDFYTK-ISR--ARFEELCSDL--FRSTLQPVEKALQDAKLDKSA 1697
+ + ++ L + FY I ++E L + + F L +E+ L +K
Sbjct: 513 AWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSK----- 563
Query: 1698 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
T + ++ L DEA+ A Q
Sbjct: 564 ---------YTDL--LRIALM------------AEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 6e-17
Identities = 108/757 (14%), Positives = 213/757 (28%), Gaps = 256/757 (33%)
Query: 1001 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVT 1060
Y D + VFE A + FD + P+ + + + I+
Sbjct: 17 QYKD-----ILSVFE--DAFVDN------FDCKDVQDMPKSILS-----KEEIDHIIM-- 56
Query: 1061 AKDTSSGKSQNITIKNDKGRLSKEEIDRMIND---------AERYKDEDERQKER----- 1106
+KD SG + K +E + + + + K E RQ
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY 112
Query: 1107 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 1166
I R+ L +N Q ++ + R + L+ L
Sbjct: 113 IEQRDRL----YNDNQVF---------AKYNVSRLQPYLKLR--------------QALL 145
Query: 1167 QLQKSCMPLMSKMHGGAGGASAGDMPRGGPTNFFCGKS-LNLSINPDEAVAYGAAVQAAI 1225
+L+ + + + G G GK+ + A+
Sbjct: 146 ELRPA--KNVL-IDGVLG----------------SGKTWV--------------ALDVC- 171
Query: 1226 LSGDQSSAIQDVLLVDVTPLSLG-IETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAV 1284
S +Q + + L+L + V+ L + +I +T+ +D+ +
Sbjct: 172 ----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNI 223
Query: 1285 TIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG------V--PKIDVTFDLDANGILNVTA 1336
+++ + LL + P V K F+L IL +T
Sbjct: 224 KLRI---HSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLSCK-IL-LTT 272
Query: 1337 KDTS------SGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED--------------- 1375
+ + + +I++ + L+ +E+ ++ + +D
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 1376 --ERQKERISARNNLEAYVFN-VKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNT 1432
E ++ ++ +N + + + ++++ N L +E + + +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-------------S 379
Query: 1433 VFDAKRLIGRKFDDPKIQQD--MKHW-------PFTVVNDCSKPKIQVEFKGERKTFAPE 1483
VF I W VVN K VE + + T
Sbjct: 380 VFP---------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTI--- 426
Query: 1484 EISSMVL-TKMKETAEAYLGH-SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 1541
I S+ L K+K E L H S+ D + +D D
Sbjct: 427 SIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLD-QYFY---------- 474
Query: 1542 PTAAALAYGLDKNLKGERNVL---IFDLGGGTFDVSILS---IDEGALFEVRSTAGDTHL 1595
+ + + L ER L +F D L + + + +T
Sbjct: 475 ---SHIGHHLKNIEHPERMTLFRMVF------LDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1596 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 1655
+ YK + N RL +
Sbjct: 526 ---QL-------------KFYKPYICDNDPKYERL-----------------------VN 546
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKAL-QDA 1691
+DF KI +DL R L ++A+ ++A
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 5e-13
Identities = 113/792 (14%), Positives = 221/792 (27%), Gaps = 268/792 (33%)
Query: 428 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVT 487
Y D + VFE A + FD + P+ + + + I+
Sbjct: 17 QYKD-----ILSVFE--DAFVDN------FDCKDVQDMPKSILS-----KEEIDHIIM-- 56
Query: 488 AKDTSSGKSQNITIKNDKGRLSKEEIDRMIND---------AERYKDEDERQKER----- 533
+KD SG + K +E + + + + K E RQ
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY 112
Query: 534 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 593
I R+ L +N Q ++ + R + L+ L
Sbjct: 113 IEQRDRL----YNDNQVF---------AKYNVSRLQPYLKLR--------------QALL 145
Query: 594 QLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKI 653
+L+ + + + G G +G K VA++ K + K D KI
Sbjct: 146 ELRPA--KNVL-IDGVLG---SG---------KTWVALD---VCLSYK--VQCKMDF-KI 184
Query: 654 QQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAV 713
W + + + PE + M+ + + + S D
Sbjct: 185 -----FW------------LNL---KNCNS--PETVLEMLQKLLYQIDPNW--TSRSDHS 220
Query: 714 ITVPAYFNDAQ---RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 770
+ + Q R+ K L V+ V ++
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-------------------AWN- 260
Query: 771 GGGTFDVS----ILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY----KK 822
F++S + + + + + S A TH+ + L + KY +
Sbjct: 261 ---AFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 823 DM-----SVNPRAL----RRLRTAAERAKRTLSSSTEASIE-IDALYDGIDFYTKISRAR 872
D+ + NPR L +R + + I++ + ++ R
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKM 374
Query: 873 FEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV---GGSTRIPKVQSLLQNFFCGKS 929
F+ L +F A I ++L I ++ N S
Sbjct: 375 FDRLS--VFP----------PSAH-----IPTILLSLIWFDV--IKSDVMVVVNKLHKYS 415
Query: 930 LNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNT 989
L + P E+ I + L L + +E + +++
Sbjct: 416 L-VEKQPKESTIS----------------IPSIYLE----LKVKLENEYALHRSIVDHYN 454
Query: 990 RIPCKQTQTFTT-YADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR--GVPKI- 1045
+ Y D + + +G L I R +
Sbjct: 455 IPKTFDSDDLIPPYLDQY------FY----------SHIG-HHLKNIEHPERMTLFRMVF 497
Query: 1046 -DVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD---EDE 1101
D F L+ I + + +SG N + + YK +++
Sbjct: 498 LDFRF-LEQK-IRHDSTAWNASGSILNT-----------------LQQLKFYKPYICDND 538
Query: 1102 RQKERISARNNLEAYV-FNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 1160
+ ER+ + A + F L L S+ D L L ++E
Sbjct: 539 PKYERL-----VNAILDF-----LPKIEENLICSK------YTD-----LLRIALMAEDE 577
Query: 1161 --YQDKLQQLQK 1170
+++ +Q+Q+
Sbjct: 578 AIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 5e-13
Identities = 113/792 (14%), Positives = 221/792 (27%), Gaps = 268/792 (33%)
Query: 1797 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVT 1856
Y D + VFE A + FD + P+ + + + I+
Sbjct: 17 QYKD-----ILSVFE--DAFVDN------FDCKDVQDMPKSILS-----KEEIDHIIM-- 56
Query: 1857 AKDTSSGKSQNITIKNDKGRLSKEEIDRMIND---------AERYKDEDERQKER----- 1902
+KD SG + K +E + + + + K E RQ
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY 112
Query: 1903 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 1962
I R+ L +N Q ++ + R + L+ L
Sbjct: 113 IEQRDRL----YNDNQVF---------AKYNVSRLQPYLKLR--------------QALL 145
Query: 1963 QLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKI 2022
+L+ + + + G G +G K VA++ K + K D KI
Sbjct: 146 ELRPA--KNVL-IDGVLG---SG---------KTWVALD---VCLSYK--VQCKMDF-KI 184
Query: 2023 QQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAV 2082
W + + + PE + M+ + + + S D
Sbjct: 185 -----FW------------LNL---KNCNS--PETVLEMLQKLLYQIDPNW--TSRSDHS 220
Query: 2083 ITVPAYFNDAQ---RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 2139
+ + Q R+ K L V+ V ++
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-------------------AWN- 260
Query: 2140 GGGTFDVS----ILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY----KK 2191
F++S + + + + + S A TH+ + L + KY +
Sbjct: 261 ---AFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 2192 DM-----SVNPRAL----RRLRTAAERAKRTLSSSTEASIE-IDALYDGIDFYTKISRAR 2241
D+ + NPR L +R + + I++ + ++ R
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKM 374
Query: 2242 FEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV---GGSTRIPKVQSLLQNFFCGKS 2298
F+ L +F A I ++L I ++ N S
Sbjct: 375 FDRLS--VFP----------PSAH-----IPTILLSLIWFDV--IKSDVMVVVNKLHKYS 415
Query: 2299 LNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNT 2358
L + P E+ I + L L + +E + +++
Sbjct: 416 L-VEKQPKESTIS----------------IPSIYLE----LKVKLENEYALHRSIVDHYN 454
Query: 2359 RIPCKQTQTFTT-YADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR--GVPKI- 2414
+ Y D + + +G L I R +
Sbjct: 455 IPKTFDSDDLIPPYLDQY------FY----------SHIG-HHLKNIEHPERMTLFRMVF 497
Query: 2415 -DVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD---EDE 2470
D F L+ I + + +SG N + + YK +++
Sbjct: 498 LDFRF-LEQK-IRHDSTAWNASGSILNT-----------------LQQLKFYKPYICDND 538
Query: 2471 RQKERISARNNLEAYV-FNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529
+ ER+ + A + F L L S+ D L L ++E
Sbjct: 539 PKYERL-----VNAILDF-----LPKIEENLICSK------YTD-----LLRIALMAEDE 577
Query: 2530 --YQDKLQQLQK 2539
+++ +Q+Q+
Sbjct: 578 AIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 4e-12
Identities = 104/753 (13%), Positives = 201/753 (26%), Gaps = 257/753 (34%)
Query: 1592 DTHLGGEDFDNR-LVSHLAEEFKRKYKKDMSVN--PRALRRLRTAAE------------R 1636
D G + + ++S + F + + + + E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV----DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 1637 AKR---TLSSSTEASIEI---DALYDGIDF-YTKIS-RARFEELCSDLFRSTLQPVEKAL 1688
R TL S E ++ + L F + I R + + ++ +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 1689 QDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVA-YGAA-----V 1742
Q K ++V +R+ L ++L L + P + V G
Sbjct: 124 Q--VFAK---YNV------SRLQPYLKLR------QAL-LELRPAKNVLIDGVLGSGKTW 165
Query: 1743 QAAILSGDQSSAIQDVLLVDVTP-----LSLG-IETAGGVMTKLIERNTRIPCKQTQTFT 1796
A + L+L + V+ L + +I +T
Sbjct: 166 VAL-------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWT 214
Query: 1797 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG------V--PKIDVTFDLD 1848
+ +D+ + +++ + LL + P V K F+L
Sbjct: 215 SRSDHSSNIKLRI---HSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 1849 ANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNN 1908
IL +T + +T D + + D
Sbjct: 266 CK-IL-LTTRFKQ------VT-------------DFLSAATTTHISLDHHSMT------- 297
Query: 1909 LEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSC 1968
LT E LK+LD L + +
Sbjct: 298 ------------------LTPDEVK------SLLLKYLDCRP--------QDLPREVLTT 325
Query: 1969 MPLMSKMHGGAGGASAGDMPRGGDAAKN--QVAMNPKNTVFDA--KRLIGRKFDDPKIQQ 2024
P + S D N V + T+ ++ L +P +
Sbjct: 326 NPRRLSIIA----ESIRDGL---ATWDNWKHVNCDKLTTIIESSLNVL------EPAEYR 372
Query: 2025 DMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEE--ISSMVLTKMKETAEAYLGHSVRDAV 2082
M +V F P I +++L+
Sbjct: 373 KM-FDRLSV-------------------F-PPSAHIPTILLSL----------------- 394
Query: 2083 ITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGG 2142
+ D + +VM +VN+ +L ++K K E + I +
Sbjct: 395 -----IWFDVIKS-----------DVMVVVNKLHKYSL---VEKQPK-ESTISIPSI--- 431
Query: 2143 TFDVSILSIDEGAL-------FEVRSTAGDTHLGGEDFDNRLVSHLA------------E 2183
++ + +E AL + + T L D SH+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 2184 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST-----EASI-EIDALYDG-----ID 2232
F+ + D + +R TA + L++ + I + D Y+ +D
Sbjct: 492 LFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 2233 FYTKISRARFEELCSDLFRSTLQPVEKAL-QDA 2264
F KI +DL R L ++A+ ++A
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 5e-12
Identities = 104/753 (13%), Positives = 201/753 (26%), Gaps = 257/753 (34%)
Query: 223 DTHLGGEDFDNR-LVSHLAEEFKRKYKKDMSVN--PRALRRLRTAAE------------R 267
D G + + ++S + F + + + + E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV----DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 268 AKR---TLSSSTEASIEI---DALYDGIDF-YTKIS-RARFEELCSDLFRSTLQPVEKAL 319
R TL S E ++ + L F + I R + + ++ +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 320 QDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVA-YGAA-----V 373
Q K ++V +R+ L ++L L + P + V G
Sbjct: 124 Q--VFAK---YNV------SRLQPYLKLR------QAL-LELRPAKNVLIDGVLGSGKTW 165
Query: 374 QAAILSGDQSSAIQDVLLVDVTP-----LSLG-IETAGGVMSKLIERNTRIPCKQTQTFT 427
A + L+L + V+ L + +I +T
Sbjct: 166 VAL-------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWT 214
Query: 428 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG------V--PKIDVTFDLD 479
+ +D+ + +++ + LL + P V K F+L
Sbjct: 215 SRSDHSSNIKLRI---HSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 480 ANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNN 539
IL +T + +T D + + D
Sbjct: 266 CK-IL-LTTRFKQ------VT-------------DFLSAATTTHISLDHHSMT------- 297
Query: 540 LEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSC 599
LT E LK+LD L + +
Sbjct: 298 ------------------LTPDEVK------SLLLKYLDCRP--------QDLPREVLTT 325
Query: 600 MPLMSKMHGGAGGASAGDMPRGGDAAKN--QVAMNPKNTVFDA--KRLIGRKFDDPKIQQ 655
P + S D N V + T+ ++ L +P +
Sbjct: 326 NPRRLSIIA----ESIRDGL---ATWDNWKHVNCDKLTTIIESSLNVL------EPAEYR 372
Query: 656 DMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEE--ISSMVLTKMKETAEAYLGHSVRDAV 713
M +V F P I +++L+
Sbjct: 373 KM-FDRLSV-------------------F-PPSAHIPTILLSL----------------- 394
Query: 714 ITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGG 773
+ D + +VM +VN+ +L ++K K E + I +
Sbjct: 395 -----IWFDVIKS-----------DVMVVVNKLHKYSL---VEKQPK-ESTISIPSI--- 431
Query: 774 TFDVSILSIDEGAL-------FEVRSTAGDTHLGGEDFDNRLVSHLA------------E 814
++ + +E AL + + T L D SH+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 815 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST-----EASI-EIDALYDG-----ID 863
F+ + D + +R TA + L++ + I + D Y+ +D
Sbjct: 492 LFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 864 FYTKISRARFEELCSDLFRSTLQPVEKAL-QDA 895
F KI +DL R L ++A+ ++A
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 5e-11
Identities = 109/753 (14%), Positives = 212/753 (28%), Gaps = 242/753 (32%)
Query: 1276 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVT 1335
Y D + VFE A + FD + P+ + + + I+
Sbjct: 17 QYKD-----ILSVFE--DAFVDN------FDCKDVQDMPKSILS-----KEEIDHIIM-- 56
Query: 1336 AKDTSSGKSQNITIKNDKGRLSKEEIDRMIND---------AERYKDEDERQKER----- 1381
+KD SG + K +E + + + + K E RQ
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY 112
Query: 1382 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMN--PKNTVFDAKRL 1439
I R+ L +N Q ++ + R + Q + P V +
Sbjct: 113 IEQRDRL----YNDNQVF---------AKYNVSRLQPYLKLRQALLELRPAKNVL----I 155
Query: 1440 IGRKFDDPKIQQDM----KHWPFTVVND-CSKPKIQVEFKGE------RKTFAPEEISSM 1488
G + K W V D C K+Q + + + +PE + M
Sbjct: 156 DG-----------VLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 1489 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ---RQATKDAGAIAGLNVMRIVNEPTAA 1545
+ + + + S D + + Q R+ K L V+ V
Sbjct: 202 LQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-- 257
Query: 1546 ALAYGLDKNLKGERNVLIFDLGGGTFDVS----ILSIDEGALFEVRSTAGDTHLGGEDFD 1601
++ F++S + + + + + S A TH+ +
Sbjct: 258 -----------------AWN----AFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHS 295
Query: 1602 NRLVSHLAEEFKRKY----KKDM-----SVNPRAL----RRLRTAAERAKRTLSSSTEAS 1648
L + KY +D+ + NPR L +R + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 1649 IE-IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV--- 1704
I++ + ++ R F+ L +F A I ++L
Sbjct: 356 TTIIESSLNVLE--PAEYRKMFDRLS--VFP----------PSAH-----IPTILLSLIW 396
Query: 1705 GGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 1764
I ++ N SL + P E+ I + L
Sbjct: 397 FDV--IKSDVMVVVNKLHKYSL-VEKQPKESTIS----------------IPSIYLE--- 434
Query: 1765 PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTT-YADNQPAVTIQVFEGERAMTKDNNLL 1823
L + +E + +++ + Y D + + +
Sbjct: 435 -LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FY----------SHI 477
Query: 1824 GTFDLTGIPPAPR--GVPKI--DVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSK 1879
G L I R + D F L+ I + + +SG N
Sbjct: 478 G-HHLKNIEHPERMTLFRMVFLDFRF-LEQK-IRHDSTAWNASGSILNT----------- 523
Query: 1880 EEIDRMINDAERYKD---EDERQKERISARNNLEAYV-FNVKQALDNAGNKLTESEKSRC 1935
+ + YK +++ + ER+ + A + F L L S+
Sbjct: 524 ------LQQLKFYKPYICDNDPKYERL-----VNAILDF-----LPKIEENLICSK---- 563
Query: 1936 REECDATLKWLDNNTLADKEE--YQDKLQQLQK 1966
D L L ++E +++ +Q+Q+
Sbjct: 564 --YTD-----LLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 8e-10
Identities = 79/529 (14%), Positives = 165/529 (31%), Gaps = 142/529 (26%)
Query: 2068 ETAEAYLGHSVRDAV-ITVPAYFNDAQRQATKDA--GAIAGLNVMRIVNEPTAAALAYGL 2124
ET E + +D + + A+ ++ + +D ++ + I+ A + L
Sbjct: 10 ETGE--HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 2125 DKNL--KGERNVLIFDLGGGTFDVSILSIDEGALF-----EVRSTAGDTHLGGEDFDNRL 2177
L K E V F + +L I+ L E R + T + + +RL
Sbjct: 68 FWTLLSKQEEMVQKF------VE-EVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRL 119
Query: 2178 VSHLAEEFKRKYKKDMSVN-PRALRRLRTAAERA---------------KRTLSSSTEAS 2221
+ + + K +V+ + +LR A K ++ S
Sbjct: 120 YND-----NQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 2222 IEI-DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS 2280
++ + I F+ + E + L+ ++K L + ++ D S
Sbjct: 174 YKVQCKMDFKI-FWLNLKNCNSPE-------TVLEMLQKLLYQIDPNWTSRSD-----HS 220
Query: 2281 TRIP----KVQSLLQNFFCGKSLN--LSI-----NPDEAVAYGAAVQAAILSGDQSSAIQ 2329
+ I +Q+ L+ K L + N A+ + + + + + +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ--VT 278
Query: 2330 DVLLVDVT-PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQP------AVTIQV 2382
D L T +SL + L + Y D +P +T
Sbjct: 279 DFLSAATTTHISLDHHSMT-----LTPDEVK------SLLLKYLDCRPQDLPREVLTTNP 327
Query: 2383 FE----GERAMTKDNNLLGTFD---------LTGIPPAPRGVPKIDVTFD-LDANGI--- 2425
+D L T+D LT I I+ + + L+
Sbjct: 328 RRLSIIA--ESIRDG--LATWDNWKHVNCDKLTTI---------IESSLNVLEPAEYRKM 374
Query: 2426 ---LNVTAKDTSSGKSQNITIK------NDKGRLSKEEIDRMINDAERYKDEDERQKERI 2476
L+V +I D + K ++ ++N +Y +++ KE
Sbjct: 375 FDRLSVFPPSA------HIPTILLSLIWFD---VIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 2477 SARNNLEAYVFNVKQALDNAG---NKLTES-EKSRCREECDATLKWLDN 2521
+ ++ Y +K L+N + + + + D +LD
Sbjct: 426 ISIPSI--Y-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 5e-09
Identities = 85/628 (13%), Positives = 170/628 (27%), Gaps = 204/628 (32%)
Query: 126 ETAEAYLGHSVRDAV-ITVPAYFNDAQRQATKDA--GAIAGLNVMRIVNEPTAAALAYGL 182
ET E + +D + + A+ ++ + +D ++ + I+ A + L
Sbjct: 10 ETGE--HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 183 DKNL--KGERNVLIFDLGGGTFDVSILSIDEGALF-----EVRSTAGDTHLGGEDFDNRL 235
L K E V F + +L I+ L E R + T + + +RL
Sbjct: 68 FWTLLSKQEEMVQKF------VE-EVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRL 119
Query: 236 VSHLAEEFKRKYKKDMSVN-PRALRRLRTAAERA---------------KRTLSSSTEAS 279
+ + + K +V+ + +LR A K ++ S
Sbjct: 120 YND-----NQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 280 IEI-DALYDGIDFYTKISRARFEE--------LC-------------------------- 304
++ + I F+ + E L
Sbjct: 174 YKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 305 --SDLFRSTLQPVEKAL------QDAKL---------------DKSAIHDVVLVGGSTRI 341
L +S +P E L Q+AK K + D + +T I
Sbjct: 233 ELRRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHI 289
Query: 342 PKVQSLLQNF-------FCGKSLNLSIN--PDEAVA--------YGAAVQAAI------- 377
+ K L+ P E + +++ +
Sbjct: 290 S-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 378 -LSGDQSSAIQDVLLVDVTP-------LSLGIETAGGVMSKLIERNTRIPCKQTQTFTTY 429
++ D+ + I + L + P L + + IP T +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----------FPPSAHIP---TILLSLI 395
Query: 430 ADNQPAVTIQVFEGE---RAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNV 486
+ + V + ++ + T IP + +L + N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SIP---------SIYLELKVK-LENE 442
Query: 487 TAKDTSSGKSQNITIKNDKGRLSKEEIDRMI--------NDAERYKDEDE---------- 528
A S NI D L +D+ + E +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 529 -RQKERISARN-NLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNN------ 580
QK R + N + N Q L + +++ R L +L
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLIC 561
Query: 581 ---------TLADKEE--YQDKLQQLQK 597
L ++E +++ +Q+Q+
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-04
Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 38/153 (24%)
Query: 2419 DLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK---ER 2475
+ D + ++ K LSKEEID +I KD
Sbjct: 32 NFDCKDVQDMP-----------------KSILSKEEIDHIIMS----KDAVSGTLRLFWT 70
Query: 2476 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLD--NNTLADKEEY--- 2530
+ ++ F V++ L L K+ R+ T +++ + D + +
Sbjct: 71 LLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 2531 ----QDKLQQLQKSCMPLMSK----MHGGASAG 2555
+L+++ + L + G +G
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 3e-04
Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 78/238 (32%)
Query: 2370 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVT 2429
Y D + VFE A + FD + P+ + + + I+
Sbjct: 17 QYKD-----ILSVFE--DAFVDN------FDCKDVQDMPKSILS-----KEEIDHIIM-- 56
Query: 2430 AKDTSSGKSQNITIKNDKGRLSKEEIDRMIND---------AERYKDEDERQKER----- 2475
+KD SG + K +E + + + + K E RQ
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY 112
Query: 2476 ISARNNL--EAYVF---NV-----KQALDNAGNKLTESE-----------KS-----RCR 2509
I R+ L + VF NV L A +L ++ K+ C
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 2510 EECDATLK--------WLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPR 2559
++ WL L + + L+ LQK + + +
Sbjct: 173 ---SYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 7e-17
Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 51/289 (17%)
Query: 99 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVIT-VPAYFNDAQRQATKD 157
+ A +E ++ + E+ G V + + P D + +A K+
Sbjct: 83 GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142
Query: 158 A------------GAIAGLNVMRIVNEPTAAALAYGL---DKNLKGERNVLIFDLGGGTF 202
A G + N+ R++ P A L + ++ D+G T
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTT 202
Query: 203 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLR 262
DV +++ + V + +G D + L +A+E D+
Sbjct: 203 DVLTINLMDMEP--VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL----------- 249
Query: 263 TAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDA 322
A+ A + + ++S E+L + + ++ + L+
Sbjct: 250 --AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRI----IENIRLNLRG- 292
Query: 323 KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAVAYG 370
+ + ++ VGG + + + + G + + + A A G
Sbjct: 293 --EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 7e-17
Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 51/289 (17%)
Query: 672 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVIT-VPAYFNDAQRQATKD 730
+ A +E ++ + E+ G V + + P D + +A K+
Sbjct: 83 GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142
Query: 731 A------------GAIAGLNVMRIVNEPTAAALAYGL---DKNLKGERNVLIFDLGGGTF 775
A G + N+ R++ P A L + ++ D+G T
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTT 202
Query: 776 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLR 835
DV +++ + V + +G D + L +A+E D+
Sbjct: 203 DVLTINLMDMEP--VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL----------- 249
Query: 836 TAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDA 895
A+ A + + ++S E+L + + ++ + L+
Sbjct: 250 --AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRI----IENIRLNLRG- 292
Query: 896 KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAVAYG 943
+ + ++ VGG + + + + G + + + A A G
Sbjct: 293 --EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 7e-17
Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 51/289 (17%)
Query: 1468 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVIT-VPAYFNDAQRQATKD 1526
+ A +E ++ + E+ G V + + P D + +A K+
Sbjct: 83 GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142
Query: 1527 A------------GAIAGLNVMRIVNEPTAAALAYGL---DKNLKGERNVLIFDLGGGTF 1571
A G + N+ R++ P A L + ++ D+G T
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTT 202
Query: 1572 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLR 1631
DV +++ + V + +G D + L +A+E D+
Sbjct: 203 DVLTINLMDMEP--VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL----------- 249
Query: 1632 TAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDA 1691
A+ A + + ++S E+L + + ++ + L+
Sbjct: 250 --AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRI----IENIRLNLRG- 292
Query: 1692 KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAVAYG 1739
+ + ++ VGG + + + + G + + + A A G
Sbjct: 293 --EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 7e-17
Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 51/289 (17%)
Query: 2041 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVIT-VPAYFNDAQRQATKD 2099
+ A +E ++ + E+ G V + + P D + +A K+
Sbjct: 83 GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142
Query: 2100 A------------GAIAGLNVMRIVNEPTAAALAYGL---DKNLKGERNVLIFDLGGGTF 2144
A G + N+ R++ P A L + ++ D+G T
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTT 202
Query: 2145 DVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLR 2204
DV +++ + V + +G D + L +A+E D+
Sbjct: 203 DVLTINLMDMEP--VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL----------- 249
Query: 2205 TAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDA 2264
A+ A + + ++S E+L + + ++ + L+
Sbjct: 250 --AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRI----IENIRLNLRG- 292
Query: 2265 KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAVAYG 2312
+ + ++ VGG + + + + G + + + A A G
Sbjct: 293 --EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 32/259 (12%), Positives = 69/259 (26%), Gaps = 50/259 (19%)
Query: 138 DAVITVPA--YFNDAQRQATKDA------------GAIAGLNVMRIVNEPTAAALAYGLD 183
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
+N K + NV + D GG S+ + S G +D R+ L +
Sbjct: 167 ENFKNK-NVAVIDFGGLNMGFSL--YRNCVV--NPSERFIEEHGVKDLIIRVGDALTDLN 221
Query: 244 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 303
+ T E AL +G +
Sbjct: 222 ---------------------------NGNLITNEQAE-SALNNGYMKKGGEIDTESSTV 253
Query: 304 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 363
+ L+ K ++ + ++ +GG+T+ ++ + + + ++ N
Sbjct: 254 IKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNS 310
Query: 364 DEAVAYGAAVQAAILSGDQ 382
G A Q
Sbjct: 311 QWTTCEGLYKVAVAKYCIQ 329
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 32/259 (12%), Positives = 69/259 (26%), Gaps = 50/259 (19%)
Query: 711 DAVITVPA--YFNDAQRQATKDA------------GAIAGLNVMRIVNEPTAAALAYGLD 756
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 757 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 816
+N K + NV + D GG S+ + S G +D R+ L +
Sbjct: 167 ENFKNK-NVAVIDFGGLNMGFSL--YRNCVV--NPSERFIEEHGVKDLIIRVGDALTDLN 221
Query: 817 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 876
+ T E AL +G +
Sbjct: 222 ---------------------------NGNLITNEQAE-SALNNGYMKKGGEIDTESSTV 253
Query: 877 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 936
+ L+ K ++ + ++ +GG+T+ ++ + + + ++ N
Sbjct: 254 IKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNS 310
Query: 937 DEAVAYGAAVQAAILSGDQ 955
G A Q
Sbjct: 311 QWTTCEGLYKVAVAKYCIQ 329
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 32/259 (12%), Positives = 69/259 (26%), Gaps = 50/259 (19%)
Query: 1507 DAVITVPA--YFNDAQRQATKDA------------GAIAGLNVMRIVNEPTAAALAYGLD 1552
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 1553 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612
+N K + NV + D GG S+ + S G +D R+ L +
Sbjct: 167 ENFKNK-NVAVIDFGGLNMGFSL--YRNCVV--NPSERFIEEHGVKDLIIRVGDALTDLN 221
Query: 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 1672
+ T E AL +G +
Sbjct: 222 ---------------------------NGNLITNEQAE-SALNNGYMKKGGEIDTESSTV 253
Query: 1673 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 1732
+ L+ K ++ + ++ +GG+T+ ++ + + + ++ N
Sbjct: 254 IKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNS 310
Query: 1733 DEAVAYGAAVQAAILSGDQ 1751
G A Q
Sbjct: 311 QWTTCEGLYKVAVAKYCIQ 329
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 32/259 (12%), Positives = 69/259 (26%), Gaps = 50/259 (19%)
Query: 2080 DAVITVPA--YFNDAQRQATKDA------------GAIAGLNVMRIVNEPTAAALAYGLD 2125
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 2126 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 2185
+N K + NV + D GG S+ + S G +D R+ L +
Sbjct: 167 ENFKNK-NVAVIDFGGLNMGFSL--YRNCVV--NPSERFIEEHGVKDLIIRVGDALTDLN 221
Query: 2186 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 2245
+ T E AL +G +
Sbjct: 222 ---------------------------NGNLITNEQAE-SALNNGYMKKGGEIDTESSTV 253
Query: 2246 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 2305
+ L+ K ++ + ++ +GG+T+ ++ + + + ++ N
Sbjct: 254 IKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNS 310
Query: 2306 DEAVAYGAAVQAAILSGDQ 2324
G A Q
Sbjct: 311 QWTTCEGLYKVAVAKYCIQ 329
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 9e-10
Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 39/222 (17%)
Query: 168 RIVNEPTAAALAYGLDKNLK----GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 223
+IV +P L ++ E + D G GT + + V +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQ----NMKRVEEESFV 213
Query: 224 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 283
+ G DF R +A +K + R + E + L+ T
Sbjct: 214 INKGTIDFYKR----IASHVSKKSE----GASITPRMIEKGLEYKQCKLNQKTVIDF--- 262
Query: 284 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 343
+ F + L + E + + I +++ GG I
Sbjct: 263 -------------KDEFYKEQDSLIEEVMSNFEITVGNINS----IDRIIVTGGGANI-- 303
Query: 344 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSA 385
L +++ + + + G +L
Sbjct: 304 HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 9e-10
Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 39/222 (17%)
Query: 741 RIVNEPTAAALAYGLDKNLK----GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 796
+IV +P L ++ E + D G GT + + V +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQ----NMKRVEEESFV 213
Query: 797 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 856
+ G DF R +A +K + R + E + L+ T
Sbjct: 214 INKGTIDFYKR----IASHVSKKSE----GASITPRMIEKGLEYKQCKLNQKTVIDF--- 262
Query: 857 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 916
+ F + L + E + + I +++ GG I
Sbjct: 263 -------------KDEFYKEQDSLIEEVMSNFEITVGNINS----IDRIIVTGGGANI-- 303
Query: 917 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSA 958
L +++ + + + G +L
Sbjct: 304 HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 9e-10
Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 39/222 (17%)
Query: 1537 RIVNEPTAAALAYGLDKNLK----GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 1592
+IV +P L ++ E + D G GT + + V +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQ----NMKRVEEESFV 213
Query: 1593 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 1652
+ G DF R +A +K + R + E + L+ T
Sbjct: 214 INKGTIDFYKR----IASHVSKKSE----GASITPRMIEKGLEYKQCKLNQKTVIDF--- 262
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
+ F + L + E + + I +++ GG I
Sbjct: 263 -------------KDEFYKEQDSLIEEVMSNFEITVGNINS----IDRIIVTGGGANI-- 303
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSA 1754
L +++ + + + G +L
Sbjct: 304 HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 9e-10
Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 39/222 (17%)
Query: 2110 RIVNEPTAAALAYGLDKNLK----GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 2165
+IV +P L ++ E + D G GT + + V +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQ----NMKRVEEESFV 213
Query: 2166 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 2225
+ G DF R +A +K + R + E + L+ T
Sbjct: 214 INKGTIDFYKR----IASHVSKKSE----GASITPRMIEKGLEYKQCKLNQKTVIDF--- 262
Query: 2226 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 2285
+ F + L + E + + I +++ GG I
Sbjct: 263 -------------KDEFYKEQDSLIEEVMSNFEITVGNINS----IDRIIVTGGGANI-- 303
Query: 2286 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSA 2327
L +++ + + + G +L
Sbjct: 304 HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-09
Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 35/197 (17%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
AGL + + +P A + +R L+ D+G + + +L VR
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLL--RGDKPLAVRVLT 220
Query: 222 GDTHLGGEDFDNRLVSHL------AEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 275
L G+DF + AEE KR Y M+ P L + + S
Sbjct: 221 ----LSGKDFTEAIARSFNLDLLAAEEVKRTY--GMATLPTEDEELLLDFDAERERYSPG 274
Query: 276 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 335
R EL +L RS L+ L++A + L+
Sbjct: 275 RIY---------------DAIRPVLVELTQELRRS-LEFFRIQLEEASPEV-----GYLL 313
Query: 336 GGSTRIPKVQSLLQNFF 352
GG +++ + SLL +
Sbjct: 314 GGGSKLRGLASLLTDTL 330
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-09
Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 35/197 (17%)
Query: 735 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 794
AGL + + +P A + +R L+ D+G + + +L VR
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLL--RGDKPLAVRVLT 220
Query: 795 GDTHLGGEDFDNRLVSHL------AEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 848
L G+DF + AEE KR Y M+ P L + + S
Sbjct: 221 ----LSGKDFTEAIARSFNLDLLAAEEVKRTY--GMATLPTEDEELLLDFDAERERYSPG 274
Query: 849 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 908
R EL +L RS L+ L++A + L+
Sbjct: 275 RIY---------------DAIRPVLVELTQELRRS-LEFFRIQLEEASPEV-----GYLL 313
Query: 909 GGSTRIPKVQSLLQNFF 925
GG +++ + SLL +
Sbjct: 314 GGGSKLRGLASLLTDTL 330
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-09
Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 35/197 (17%)
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 1590
AGL + + +P A + +R L+ D+G + + +L VR
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLL--RGDKPLAVRVLT 220
Query: 1591 GDTHLGGEDFDNRLVSHL------AEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 1644
L G+DF + AEE KR Y M+ P L + + S
Sbjct: 221 ----LSGKDFTEAIARSFNLDLLAAEEVKRTY--GMATLPTEDEELLLDFDAERERYSPG 274
Query: 1645 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 1704
R EL +L RS L+ L++A + L+
Sbjct: 275 RIY---------------DAIRPVLVELTQELRRS-LEFFRIQLEEASPEV-----GYLL 313
Query: 1705 GGSTRIPKVQSLLQNFF 1721
GG +++ + SLL +
Sbjct: 314 GGGSKLRGLASLLTDTL 330
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-09
Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 35/197 (17%)
Query: 2104 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 2163
AGL + + +P A + +R L+ D+G + + +L VR
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLL--RGDKPLAVRVLT 220
Query: 2164 GDTHLGGEDFDNRLVSHL------AEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 2217
L G+DF + AEE KR Y M+ P L + + S
Sbjct: 221 ----LSGKDFTEAIARSFNLDLLAAEEVKRTY--GMATLPTEDEELLLDFDAERERYSPG 274
Query: 2218 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 2277
R EL +L RS L+ L++A + L+
Sbjct: 275 RIY---------------DAIRPVLVELTQELRRS-LEFFRIQLEEASPEV-----GYLL 313
Query: 2278 GGSTRIPKVQSLLQNFF 2294
GG +++ + SLL +
Sbjct: 314 GGGSKLRGLASLLTDTL 330
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 44/204 (21%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
+ ++ + + A L K +R V++ +LG + G +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEK-DRGVVVVNLGYNFTGLIA--YKNGVP---IKIS 232
Query: 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT-----LSSST 276
+G + D+S L +ER T +
Sbjct: 233 YVP-VGMKHVIK----------------DVSA---VLDTSFEESERLIITHGNAVYNDLK 272
Query: 277 EASIEIDALYDGIDFYTKISR--------ARFEELCSDLFRSTLQPVEKALQDAKLDKSA 328
E I+ L + + AR E+ S + + VE + +
Sbjct: 273 EEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMS-KSKKFFREVEAKIVEEGEIG-I 328
Query: 329 IHDVVLVGGSTRIPKVQSLLQNFF 352
VVL GG +IP++ L F
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVF 352
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 44/204 (21%)
Query: 735 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 794
+ ++ + + A L K +R V++ +LG + G +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEK-DRGVVVVNLGYNFTGLIA--YKNGVP---IKIS 232
Query: 795 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT-----LSSST 849
+G + D+S L +ER T +
Sbjct: 233 YVP-VGMKHVIK----------------DVSA---VLDTSFEESERLIITHGNAVYNDLK 272
Query: 850 EASIEIDALYDGIDFYTKISR--------ARFEELCSDLFRSTLQPVEKALQDAKLDKSA 901
E I+ L + + AR E+ S + + VE + +
Sbjct: 273 EEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMS-KSKKFFREVEAKIVEEGEIG-I 328
Query: 902 IHDVVLVGGSTRIPKVQSLLQNFF 925
VVL GG +IP++ L F
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVF 352
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 44/204 (21%)
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 1590
+ ++ + + A L K +R V++ +LG + G +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEK-DRGVVVVNLGYNFTGLIA--YKNGVP---IKIS 232
Query: 1591 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT-----LSSST 1645
+G + D+S L +ER T +
Sbjct: 233 YVP-VGMKHVIK----------------DVSA---VLDTSFEESERLIITHGNAVYNDLK 272
Query: 1646 EASIEIDALYDGIDFYTKISR--------ARFEELCSDLFRSTLQPVEKALQDAKLDKSA 1697
E I+ L + + AR E+ S + + VE + +
Sbjct: 273 EEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMS-KSKKFFREVEAKIVEEGEIG-I 328
Query: 1698 IHDVVLVGGSTRIPKVQSLLQNFF 1721
VVL GG +IP++ L F
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVF 352
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 44/204 (21%)
Query: 2104 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 2163
+ ++ + + A L K +R V++ +LG + G +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEK-DRGVVVVNLGYNFTGLIA--YKNGVP---IKIS 232
Query: 2164 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT-----LSSST 2218
+G + D+S L +ER T +
Sbjct: 233 YVP-VGMKHVIK----------------DVSA---VLDTSFEESERLIITHGNAVYNDLK 272
Query: 2219 EASIEIDALYDGIDFYTKISR--------ARFEELCSDLFRSTLQPVEKALQDAKLDKSA 2270
E I+ L + + AR E+ S + + VE + +
Sbjct: 273 EEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMS-KSKKFFREVEAKIVEEGEIG-I 328
Query: 2271 IHDVVLVGGSTRIPKVQSLLQNFF 2294
VVL GG +IP++ L F
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVF 352
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 512 EIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSRCREEC 570
+ DR+ + E + E Q++R+ + ++Q + A L E + + E+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASK---VMEQEWREKAKKDLEEWNQRQ-SEQV 131
Query: 571 DATLKWLDNNTLADKEEYQD 590
+ K NN +ADK YQ
Sbjct: 132 E---KNKINNRIADKAFYQQ 148
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 1085 EIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSRCREEC 1143
+ DR+ + E + E Q++R+ + ++Q + A L E + + E+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASK---VMEQEWREKAKKDLEEWNQRQ-SEQV 131
Query: 1144 DATLKWLDNNTLADKEEYQD 1163
+ K NN +ADK YQ
Sbjct: 132 E---KNKINNRIADKAFYQQ 148
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 1881 EIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSRCREEC 1939
+ DR+ + E + E Q++R+ + ++Q + A L E + + E+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASK---VMEQEWREKAKKDLEEWNQRQ-SEQV 131
Query: 1940 DATLKWLDNNTLADKEEYQD 1959
+ K NN +ADK YQ
Sbjct: 132 E---KNKINNRIADKAFYQQ 148
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 2454 EIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL-DNAGNKLTESEKSRCREEC 2512
+ DR+ + E + E Q++R+ + ++Q + A L E + + E+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASK---VMEQEWREKAKKDLEEWNQRQ-SEQV 131
Query: 2513 DATLKWLDNNTLADKEEYQD 2532
+ K NN +ADK YQ
Sbjct: 132 E---KNKINNRIADKAFYQQ 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2568 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 100.0 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 100.0 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.98 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.97 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.97 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.97 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.97 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.96 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.95 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.92 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.9 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.88 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.88 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.88 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.88 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.87 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.84 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.82 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.81 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.8 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.8 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.78 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.77 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.7 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.69 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.64 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.5 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.48 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.4 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.39 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 99.35 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.29 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.28 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 99.27 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.07 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.01 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 98.97 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 98.92 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 98.89 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 98.84 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 98.84 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 98.78 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 98.77 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 98.66 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 98.63 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 98.57 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 98.38 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 98.04 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 97.92 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 97.5 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.2 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.13 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 97.1 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.17 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 95.58 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 95.04 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 94.78 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 92.35 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 91.89 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 91.72 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 91.63 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 91.62 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 91.41 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 91.33 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 91.22 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 91.14 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 90.81 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 90.57 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 90.51 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 90.5 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 90.34 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 90.3 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 90.01 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 89.74 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 89.26 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 88.95 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 88.79 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 88.75 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 88.71 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 88.58 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 88.3 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 88.03 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 88.02 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 88.02 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 88.02 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 88.01 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 87.83 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 87.46 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 87.44 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 87.15 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 86.55 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 86.39 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 86.02 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 85.48 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 85.41 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 85.37 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 85.34 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 84.31 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 83.43 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 83.4 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 83.06 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 82.03 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 82.01 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 81.75 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 80.82 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 80.59 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 80.5 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 80.36 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-96 Score=995.14 Aligned_cols=551 Identities=51% Similarity=0.796 Sum_probs=526.7
Q ss_pred CCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHH
Q psy7639 1985 GDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVL 2063 (2568)
Q Consensus 1985 ~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL 2063 (2568)
++++++|..|++++.+||.||++++|||||++|+||.++.+.++|||.++. .+|.+.+.+ .+ ..|+|+||++|+|
T Consensus 45 ~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL 120 (605)
T 4b9q_A 45 DGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVL 120 (605)
T ss_dssp TSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEE--TT--EEECHHHHHHHHH
T ss_pred CCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEE--CC--EEECHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999985 566666655 34 6899999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCee
Q psy7639 2064 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGT 2143 (2568)
Q Consensus 2064 ~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt 2143 (2568)
++|++.|+.++|.++.++||||||||++.||++|++||++|||+|++|||||+|||++||+++.. .+.++||||+||||
T Consensus 121 ~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~~-~~~~vlV~DlGGGT 199 (605)
T 4b9q_A 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT-GNRTIAVYDLGGGA 199 (605)
T ss_dssp HHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSCC-SSEEEEEEEECSSC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhccC-CCCEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999998752 46899999999999
Q ss_pred eEEEEEEEcC----CcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcce
Q psy7639 2144 FDVSILSIDE----GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE 2219 (2568)
Q Consensus 2144 ~dvsil~~~~----g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~ 2219 (2568)
||||++++.+ | .|+|++++||.+|||+|||++|++||.++|+++++.++..+++++++|+.+||++|+.||...+
T Consensus 200 ~Dvsi~~~~~~~~~~-~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~ 278 (605)
T 4b9q_A 200 FDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ 278 (605)
T ss_dssp EEEEEEEEEESSSCE-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred EEEEEEEEecCCCCc-eEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCC
Confidence 9999999987 7 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcC
Q psy7639 2220 ASIEIDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 2295 (2568)
Q Consensus 2220 ~~~~i~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~ 2295 (2568)
+.++++++..+ .++..+|||++||++++++++++..+|+++|+++++++.+|+.|+||||+||||.||+.|+++|
T Consensus 279 ~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f- 357 (605)
T 4b9q_A 279 TDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF- 357 (605)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH-
T ss_pred eEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh-
Confidence 99999987754 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCC
Q psy7639 2296 GKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQ 2375 (2568)
Q Consensus 2296 ~~~~~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q 2375 (2568)
++++..++|||||||+|||+||+.|++ .++++.++||+|+|+||++.+|.|.++|||||+||++++++|+|..|+|
T Consensus 358 g~~~~~~~nPdeaVA~GAai~a~~l~~----~~~~~~l~dv~p~slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q 433 (605)
T 4b9q_A 358 GKEPRKDVNPDEAVAIGAAVQGGVLTG----DVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQ 433 (605)
T ss_dssp TSCCCSSSCTTTHHHHHHHHHHHHHHT----SSCSEEEECBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTC
T ss_pred ccCcCCCcChhHHHHHhHHHHHHHhcC----CCCceEEEeeeeeEEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccC
Confidence 688899999999999999999999998 3679999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHH
Q psy7639 2376 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEI 2455 (2568)
Q Consensus 2376 ~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei 2455 (2568)
+.+.|+|||||+.++.+|..||+|.|+|+||+|+|.|+|+|+|++|.||+|+|++.++.||++++++|++. .+||++||
T Consensus 434 ~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~ei 512 (605)
T 4b9q_A 434 SAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEI 512 (605)
T ss_dssp CEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTSCEEEEEEETTTCCEECCEEESC-CSCCHHHH
T ss_pred ceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcCCcEEEEEEEecCCCcEEEEEecCC-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 57999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Q psy7639 2456 DRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 2535 (2568)
Q Consensus 2456 ~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~ 2535 (2568)
++|++++++|+++|++.|+++++||+||+|+|++++.|+++.+++++++|++|+++|+++++||+++ ++++|+++++
T Consensus 513 ~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~ 589 (605)
T 4b9q_A 513 QKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQ 589 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHH
T ss_pred HHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 9999999999999999999999999999999999999998778999999999999999999999976 5899999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy7639 2536 QLQKSCMPLMSKMHG 2550 (2568)
Q Consensus 2536 ~L~~~~~pi~~r~~e 2550 (2568)
+|++.|.|++.++|+
T Consensus 590 ~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 590 ELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999985
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-95 Score=990.67 Aligned_cols=560 Identities=29% Similarity=0.477 Sum_probs=527.5
Q ss_pred CCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEe-cCCCceEEEEEcCceeeeChhhhHHHHH
Q psy7639 1985 GDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERKTFAPEEISSMVL 2063 (2568)
Q Consensus 1985 ~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~peei~a~iL 2063 (2568)
++++++|.+|+++..+||+||++++|||||++|+|+.+|.+.++|||.++. .+|.+.+.+.+.++.+.|+|+||++|+|
T Consensus 44 ~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L 123 (675)
T 3d2f_A 44 PKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 123 (675)
T ss_dssp SSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred CCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999985 5788888888888778999999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCc-----CCcceEEEEe
Q psy7639 2064 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNL-----KGERNVLIFD 2138 (2568)
Q Consensus 2064 ~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~-----~~~~~vlv~D 2138 (2568)
++||+.|++++|.+|.++||||||||++.||++|++||++|||++++|||||||||++||+.+.. ..+.++||||
T Consensus 124 ~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~D 203 (675)
T 3d2f_A 124 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVD 203 (675)
T ss_dssp HHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999986631 2467899999
Q ss_pred eCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcc
Q psy7639 2139 LGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 2218 (2568)
Q Consensus 2139 lGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~ 2218 (2568)
+|||||||||+++.+| .|+|++++||.+|||+|||++|++||.++|+++|++++..++++++||+.+||++|+.||.+.
T Consensus 204 lGGGT~Dvsv~~~~~g-~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~ 282 (675)
T 3d2f_A 204 IGHSSYTCSIMAFKKG-QLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT 282 (675)
T ss_dssp ECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCCcEEEEEEEecCC-eEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCC
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCC
Q psy7639 2219 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKS 2298 (2568)
Q Consensus 2219 ~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~ 2298 (2568)
++.++++++++|.++..+|||++||++++++++++..+|+++|+++++++++|+.|+||||+||||.||+.|+++| +++
T Consensus 283 ~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~f-g~~ 361 (675)
T 3d2f_A 283 NAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKP 361 (675)
T ss_dssp EEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHH-TSC
T ss_pred ceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 578
Q ss_pred CCCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCe----eeEeeecCCCCCccceeeEEeccCC
Q psy7639 2299 LNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV----MTKLIERNTRIPCKQTQTFTTYADN 2374 (2568)
Q Consensus 2299 ~~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~----~~~li~r~~~iP~~~~~~f~t~~d~ 2374 (2568)
+..++|||||||+|||+||+.|++ .++++++.++|++|+||||++.+|. +.+||||||+||++++++|+|..|+
T Consensus 362 ~~~~~nPdeaVA~GAa~~a~~ls~--~~~v~~~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~ 439 (675)
T 3d2f_A 362 LSTTLNQDEAIAKGAAFICAIHSP--TLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDF 439 (675)
T ss_dssp EECCSCTTTHHHHHHHHHHHHTCS--SCCCCCCEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCE
T ss_pred ccccCCcchHHHHHHHHHHHHhCC--CCcccceEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCc
Confidence 889999999999999999999998 5678999999999999999998874 9999999999999999999998765
Q ss_pred CCcEEEEEeecCccccc-CCCceeEEEecCCCCCCCCCc-ceEEEEEeCCCeeEEEEee----------eccCCCcceeE
Q psy7639 2375 QPAVTIQVFEGERAMTK-DNNLLGTFDLTGIPPAPRGVP-KIDVTFDLDANGILNVTAK----------DTSSGKSQNIT 2442 (2568)
Q Consensus 2375 q~~~~i~v~~ge~~~~~-~n~~lg~~~l~~i~~~~~g~~-~i~v~f~id~~Gil~v~a~----------~~~t~~~~~i~ 2442 (2568)
| +.+. |+||+.++. +|..||+|.|+||||+|+|.+ +|+|+|++|.||||+|++. ++.||++.+++
T Consensus 440 ~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~ 516 (675)
T 3d2f_A 440 S--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLT 516 (675)
T ss_dssp E--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECE
T ss_pred e--EEEE-EcCCcccccccCceeeEEEecCcCCCCCCCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEE
Confidence 4 3332 789999987 999999999999999999985 9999999999999999995 78999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCCHHHHHHHHHHHHHHHHHhhc
Q psy7639 2443 IKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDN-AGNKLTESEKSRCREECDATLKWLDN 2521 (2568)
Q Consensus 2443 i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~-~~~~l~~~ek~~i~~~l~e~~~WL~~ 2521 (2568)
|++..++||+++|++|++++++|+++|++++++++++|+||+|+|++|++|++ +.+++++++|++++++|+++++||++
T Consensus 517 i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~ 596 (675)
T 3d2f_A 517 IVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYD 596 (675)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTT
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 99876689999999999999999999999999999999999999999999976 45789999999999999999999986
Q ss_pred C-CccCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7639 2522 N-TLADKEEYQDKLQQLQKSCMPLMSKMHGG 2551 (2568)
Q Consensus 2522 ~-~~a~~ee~~~k~~~L~~~~~pi~~r~~e~ 2551 (2568)
+ .++++++|++|+++|++++.||..|+++.
T Consensus 597 ~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e~ 627 (675)
T 3d2f_A 597 EGFDSIKAKYIAKYEELASLGNIIRGRYLAK 627 (675)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 46789999999999999999999999874
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-94 Score=975.38 Aligned_cols=550 Identities=51% Similarity=0.801 Sum_probs=525.8
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEE-ecCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV-NDCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
+++++|..|+++..+||+||++++||+||++|+|+.++...++|||.++ ..+|.+.+.+ .+ +.|+|+||++|+|+
T Consensus 46 ~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~ 121 (605)
T 2kho_A 46 GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLK 121 (605)
T ss_dssp SCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHH
T ss_pred CcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEEEE--CC--EEEcHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999987 5677777666 44 68999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+||+.|++++|.++.++||||||||++.||++|++||++|||+|++|||||||||++||+++. ..+.++||||+|||||
T Consensus 122 ~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~-~~~~~vlV~DlGGGT~ 200 (605)
T 2kho_A 122 KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTF 200 (605)
T ss_dssp HHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSS-SSEEEEEEEEECSSCE
T ss_pred HHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecCHHHHHHHhhhccc-CCCCEEEEEECCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999764 2468899999999999
Q ss_pred EEEEEEEc----CCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCccee
Q psy7639 2145 DVSILSID----EGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEA 2220 (2568)
Q Consensus 2145 dvsil~~~----~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~ 2220 (2568)
|||++++. +| .|+|++++||.+|||+|||++|++||.++|+++++.++..+++++++|+.+||++|+.||.+.++
T Consensus 201 Dvsi~~~~~~~~~g-~~~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~ 279 (605)
T 2kho_A 201 DISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT 279 (605)
T ss_dssp EEEEEEEECTTTSC-EEEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred EEEEEEEEecCCCC-eEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCce
Confidence 99999997 78 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCC----cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCC
Q psy7639 2221 SIEIDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG 2296 (2568)
Q Consensus 2221 ~~~i~~~~~~----~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~ 2296 (2568)
.+++++++++ .++..+|||++||++++++++++..+|+++|+++++++.+|+.|+||||+||||.|++.|+++| +
T Consensus 280 ~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f-g 358 (605)
T 2kho_A 280 DVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-G 358 (605)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHH-S
T ss_pred EEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhc-C
Confidence 9999988763 6788999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCCCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCC
Q psy7639 2297 KSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQP 2376 (2568)
Q Consensus 2297 ~~~~~~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~ 2376 (2568)
+++..++|||||||+|||+||+.|+++ ++++.++|++|+|+|+++.+|.|+++||||++||++++++|+|..|+|+
T Consensus 359 ~~~~~~~npd~aVA~GAa~~a~~l~~~----~~~~~l~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~ 434 (605)
T 2kho_A 359 KEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 434 (605)
T ss_dssp SCCBCSSCTTTHHHHHHHHHHTTTTTS----CCCCCCSBCCCCCEEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCC
T ss_pred CCcCcCCCcchHHHHHHHHHHHHhcCC----ccCceEEeeeeeeccccccCCceEEEEecccccCccceEEEEecCCCce
Confidence 788899999999999999999999983 6889999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHH
Q psy7639 2377 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEID 2456 (2568)
Q Consensus 2377 ~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~ 2456 (2568)
.+.|+|||||+.++.+|..||+|.|+|+||+|+|.++|+|+|++|.||+|+|++.++.||++.+++|++. ++||++||+
T Consensus 435 ~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~~i~ 513 (605)
T 2kho_A 435 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQ 513 (605)
T ss_dssp EEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECTT-SSCCHHHHH
T ss_pred EEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcCCCceeEEEEEcCCCceeecccccc-cCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 789999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Q psy7639 2457 RMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQ 2536 (2568)
Q Consensus 2457 ~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~ 2536 (2568)
+|++++++|+++|+++|++.+++|+||+|+|++|++|+++.+++++++|++|+++|+++++||+++ ++++|++++++
T Consensus 514 ~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~ 590 (605)
T 2kho_A 514 KMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQE 590 (605)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 999999999999999999999999999999999999988778999999999999999999999954 79999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy7639 2537 LQKSCMPLMSKMHG 2550 (2568)
Q Consensus 2537 L~~~~~pi~~r~~e 2550 (2568)
|++++.||..|+|+
T Consensus 591 l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 591 LAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999985
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-92 Score=952.31 Aligned_cols=583 Identities=48% Similarity=0.754 Sum_probs=549.3
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++||+.++.+.+ |..|++.|||+|+|.+. +|..|++++..||.+|++++|||||+.++|+.++.+++
T Consensus 8 DlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~ 87 (605)
T 4b9q_A 8 DLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVS 87 (605)
T ss_dssp ECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHHHHHHHT
T ss_pred EcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHHHHHHhh
Confidence 5999999999999988877 99999999999999643 69999999999999999999999999999999999999
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
++||.++..... ...+.+ .++.|+|+++++++|++|++.|+.++|.++.++||||||||++.||++|++|+++|||+
T Consensus 88 ~~p~~~~~~~~g-~~~~~~--~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~AGl~ 164 (605)
T 4b9q_A 88 IMPFKIIAADNG-DAWVEV--KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLE 164 (605)
T ss_dssp TCSSEEEECTTS-BEEEEE--TTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred cCCeEEEEcCCC-ceEEEE--CCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 999999875433 333444 46789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecC----CcEEEEEEecCCCCCChhHHHHHHHHHHHH
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDE----GALFEVRSTAGDTHLGGEDFDNRLVSHLAE 1610 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~----g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~ 1610 (2568)
++++++||+|||++|+.+... .+.++||||+||||||+|++++.+ + .++++++.|+.++||.+||+.|++||.+
T Consensus 165 v~~li~EP~AAAlaygl~~~~-~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~-~~evla~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 4b9q_A 165 VKRIINEPTAAALAYGLDKGT-GNRTIAVYDLGGGAFDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp EEEEEEHHHHHHHHHHTTSCC-SSEEEEEEEECSSCEEEEEEEEEESSSCE-EEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred eEEEeCcHHHHHHHhhhhccC-CCCEEEEEECCCCeEEEEEEEEecCCCCc-eEEEEEecCCCCcChHHHHHHHHHHHHH
Confidence 999999999999999887642 467899999999999999999865 5 8999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCC----cceeeecCHHHHHHHHhHHHHHHHHHHHH
Q psy7639 1611 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEK 1686 (2568)
Q Consensus 1611 ~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~fe~l~~pli~~i~~~i~~ 1686 (2568)
+|+++++.+...++..+.+|+.+||++|+.||....+.+.++.+..+ .++.++|||++|+++|+|+++++..+|++
T Consensus 243 ~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~~ 322 (605)
T 4b9q_A 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKV 322 (605)
T ss_dssp HHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988899999999999999999999999999988865432 56889999999999999999999999999
Q ss_pred HHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeeccc
Q psy7639 1687 ALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPL 1766 (2568)
Q Consensus 1687 ~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~ 1766 (2568)
+|+++++.+.+|+.|+||||+|++|+|+++|+++| ++.+..+.||++|||+|||+||+++++. .++++++|++|+
T Consensus 323 ~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAai~a~~l~~~----~~~~~l~dv~p~ 397 (605)
T 4b9q_A 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPL 397 (605)
T ss_dssp HHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH-TSCCCSSSCTTTHHHHHHHHHHHHHHTS----SCSEEEECBCSS
T ss_pred HHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh-ccCcCCCcChhHHHHHhHHHHHHHhcCC----CCceEEEeeeee
Confidence 99999999999999999999999999999999999 6778889999999999999999999986 468999999999
Q ss_pred ccceeecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEE
Q psy7639 1767 SLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFD 1846 (2568)
Q Consensus 1767 slGie~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~ 1846 (2568)
|||+++.+|.|.+||||||+||++++++|+|..|||+.+.|+|||||+.++.+|..||+|.|.|+||+|+|.++|+|+|+
T Consensus 398 slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~ 477 (605)
T 4b9q_A 398 SLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFD 477 (605)
T ss_dssp CEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEE
T ss_pred EEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCeeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7639 1847 LDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNK 1926 (2568)
Q Consensus 1847 id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~ 1926 (2568)
||.||+|+|+|++..||++++++|+++ ..||++||++|++++++|+.+|+++++++++||++|+++|++++.|++.+++
T Consensus 478 id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~ 556 (605)
T 4b9q_A 478 IDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDK 556 (605)
T ss_dssp ECTTSCEEEEEEETTTCCEECCEEESC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EcCCcEEEEEEEecCCCcEEEEEecCC-CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999986 5799999999999999999999999999999999999999999999998999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1927 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+++++++++...++++++||+.+ +.++|+.++++|+++|+|+++++|+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 557 LPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999865 6899999999999999999999996
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-90 Score=932.18 Aligned_cols=583 Identities=49% Similarity=0.755 Sum_probs=546.0
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccch----hhhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCR----EECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~----~~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |.+|++.|||+|+|.. .+|..|++++..||.+|++++||+||+.++|+.++.+++
T Consensus 8 DlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v~~~~~ 87 (605)
T 2kho_A 8 DLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVS 87 (605)
T ss_dssp ECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTHHHHHH
T ss_pred EcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHHHHHhh
Confidence 5999999999999987766 8999999999999943 269999999999999999999999999999999999999
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
++||.++.... ....+.+ .++.|+|+||++++|++|++.|+.++|.++.++||||||||++.||++|++|+++|||+
T Consensus 88 ~~p~~~~~~~~-g~~~i~~--~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AGl~ 164 (605)
T 2kho_A 88 IMPFKIIAADN-GDAWVEV--KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLE 164 (605)
T ss_dssp HCSSCEEECTT-SBEEEEE--TTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCE
T ss_pred cCCeEEEECCC-CceEEEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 99999875432 2334444 35789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEec----CCcEEEEEEecCCCCCChhHHHHHHHHHHHH
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID----EGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 1610 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~----~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~ 1610 (2568)
++++++||+|||++|+.+.. ..+.++||||+||||||+|++++. +| .++|+++.|+.++||.+||+.|++|+.+
T Consensus 165 v~~li~EP~AAAlay~l~~~-~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g-~~~v~a~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 2kho_A 165 VKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp EEEEEEHHHHHHHHTTTTSS-SSEEEEEEEEECSSCEEEEEEEEECTTTSC-EEEEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred eEEEecCHHHHHHHhhhccc-CCCCEEEEEECCCCeEEEEEEEEEecCCCC-eEEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999998653 257789999999999999999996 56 8899999999999999999999999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC---C-cceeeecCHHHHHHHHhHHHHHHHHHHHH
Q psy7639 1611 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD---G-IDFYTKISRARFEELCSDLFRSTLQPVEK 1686 (2568)
Q Consensus 1611 ~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~fe~l~~pli~~i~~~i~~ 1686 (2568)
+|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.+ | .++.++|||++|+++|+|+++++..+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 322 (605)
T 2kho_A 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKV 322 (605)
T ss_dssp HHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999889999999999999999999999889998886654 3 56778999999999999999999999999
Q ss_pred HHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeeccc
Q psy7639 1687 ALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPL 1766 (2568)
Q Consensus 1687 ~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~ 1766 (2568)
+|+++++.+.+|+.|+||||+|++|+|+++|+++| +..+..+.||++|||+|||++|+.+++. .++++++|++|+
T Consensus 323 ~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f-g~~~~~~~npd~aVA~GAa~~a~~l~~~----~~~~~l~dv~p~ 397 (605)
T 2kho_A 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPL 397 (605)
T ss_dssp HHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHHTTTTTS----CCCCCCSBCCCC
T ss_pred HHHHcCCChhhCceEEEECCcccChHHHHHHHHhc-CCCcCcCCCcchHHHHHHHHHHHHhcCC----ccCceEEeeeee
Confidence 99999999999999999999999999999999999 5678889999999999999999999875 467889999999
Q ss_pred ccceeecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEE
Q psy7639 1767 SLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFD 1846 (2568)
Q Consensus 1767 slGie~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~ 1846 (2568)
|||+++.+|.|.+||+|||+||+++++.|++..|+|+.+.|+|||||+.++.+|..||+|.|.++||+|+|.++|+|+|+
T Consensus 398 slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~ 477 (605)
T 2kho_A 398 SLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFD 477 (605)
T ss_dssp CEEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEE
T ss_pred eccccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCeeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7639 1847 LDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNK 1926 (2568)
Q Consensus 1847 id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~ 1926 (2568)
||.||+|+|++.+..||++++++|+++ ++||++||++|++++++|+.+|+++++++++||++|+++|++++.|+++.++
T Consensus 478 id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~ 556 (605)
T 2kho_A 478 IDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDK 556 (605)
T ss_dssp ECTTSCEEEEEEETTTCCEEEEEECTT-SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EcCCCceeEEEEEcCCCceeecccccc-cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999987 7899999999999999999999999999999999999999999999988899
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1927 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+++++++++...++++++||+++ +.++|++++++|++.++|+.+++|+
T Consensus 557 ~~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 557 LPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999843 8999999999999999999999986
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-89 Score=924.16 Aligned_cols=590 Identities=28% Similarity=0.453 Sum_probs=544.9
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH 1455 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k~ 1455 (2568)
.||||||++|++.++++.+ |..|++.|||+|+|... +|+.|++++.+||.+|++++||+||+.++|+.++.++++
T Consensus 8 DlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~ 87 (675)
T 3d2f_A 8 DLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKH 87 (675)
T ss_dssp ECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHHHHHTT
T ss_pred EcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHHHHHhh
Confidence 5999999999999887666 99999999999999644 699999999999999999999999999999999999999
Q ss_pred cccEEeeCC-CCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1456 WPFTVVNDC-SKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1456 ~~~~~~~~~-~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
|||.++... +.+.+.+.+.+..+.|+|++|++++|++|++.|+.++|.++.+|||||||||++.||++|++|+++|||+
T Consensus 88 ~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 167 (675)
T 3d2f_A 88 FTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLN 167 (675)
T ss_dssp CCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred CCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 999998753 4445555665656789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccc-----cCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHH
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNL-----KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 1609 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~-----~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~ 1609 (2568)
+++|++||+|||++|+..... ..+.++||||+||||||+|++++.+| .++|+++.|+.++||.+||+.|++|+.
T Consensus 168 ~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g-~~~V~a~~gd~~lGG~d~D~~l~~~l~ 246 (675)
T 3d2f_A 168 PVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG-QLKVLGTACDKHFGGRDFDLAITEHFA 246 (675)
T ss_dssp EEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred eEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCC-eEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 999999999999999886521 35678999999999999999999877 789999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHH
Q psy7639 1610 EEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQ 1689 (2568)
Q Consensus 1610 ~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~ 1689 (2568)
++|.++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.++.++.++|||++|+++|+|+++++..+|+++|+
T Consensus 247 ~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~ 326 (675)
T 3d2f_A 247 DEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALA 326 (675)
T ss_dssp HHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999999999999999988889999998888899999999999999999999999999999999
Q ss_pred HcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccc
Q psy7639 1690 DAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG 1769 (2568)
Q Consensus 1690 ~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slG 1769 (2568)
++++.+.+|+.|+||||+|++|+|+++|+++| +..+..+.||++|||+|||++|+.+++.. .+++++++|++|+|||
T Consensus 327 ~a~l~~~~I~~VvLvGGssriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAa~~a~~ls~~~--~v~~~~l~Dv~p~slg 403 (675)
T 3d2f_A 327 QAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDIHPYSVS 403 (675)
T ss_dssp HHTCCGGGCCEEEEESGGGGSHHHHHHHHHHH-TSCEECCSCTTTHHHHHHHHHHHHTCSSC--CCCCCEEEEEECSCEE
T ss_pred HhCCChhhCcEEEEECCCccChHHHHHHHHhc-CCCccccCCcchHHHHHHHHHHHHhCCCC--cccceEEEeeeecceE
Confidence 99999999999999999999999999999999 56788899999999999999999998753 4678999999999999
Q ss_pred eeecCcE----EEEEEecCCccccccEEEEEeecCCCceEEEEEEeccccccc-CCceeeeeEecCCCCCCCCCc-eEEE
Q psy7639 1770 IETAGGV----MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTK-DNNLLGTFDLTGIPPAPRGVP-KIDV 1843 (2568)
Q Consensus 1770 ie~~~g~----~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~-~n~~lg~~~l~~ipp~~~g~~-~i~v 1843 (2568)
+++.+|. |.+||||||+||++++++|++..++| +.+. |+||+.++. +|..||+|.|.|+||+|+|.+ +|+|
T Consensus 404 i~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i~v 480 (675)
T 3d2f_A 404 YSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVKL 480 (675)
T ss_dssp EEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEEEE
T ss_pred eeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCCCcceEEE
Confidence 9998874 99999999999999999999876553 3333 789999998 999999999999999999985 9999
Q ss_pred EEEEcCCeeEEEEEE----------EcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy7639 1844 TFDLDANGILNVTAK----------DTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYV 1913 (2568)
Q Consensus 1844 ~f~id~nGiL~V~a~----------d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~ 1913 (2568)
+|++|.||+|+|++. ++.||++.+++|+++.++||++||++|++++++|+.+|++++++.++||+||+|+
T Consensus 481 ~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i 560 (675)
T 3d2f_A 481 KLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYI 560 (675)
T ss_dssp EEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999999999995 7999999999999877789999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHhhc-CCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1914 FNVKQALDN-AGNKLTESEKSRCREECDATLKWLDN-NTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1914 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
|++++.|++ +.+++++++++++...|+++++||.+ +..+++++|++|+++|++.++||..++|.
T Consensus 561 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e 626 (675)
T 3d2f_A 561 YTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLA 626 (675)
T ss_dssp HHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999965 77889999999999999999999954 35678999999999999999999988874
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-89 Score=917.28 Aligned_cols=507 Identities=77% Similarity=1.156 Sum_probs=490.4
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 2065 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~ 2065 (2568)
+++++|.+|+++..+||.||++++|||||++|+|+.+|..+++|||.+++.+|.+.+.+.+.++.+.|+|+||++|+|++
T Consensus 47 ~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~ 126 (554)
T 1yuw_A 47 TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTK 126 (554)
T ss_dssp SCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHH
T ss_pred CcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999998889999999998888899999999999999
Q ss_pred HHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeE
Q psy7639 2066 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 2145 (2568)
Q Consensus 2066 lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~d 2145 (2568)
||+.|++++|.++.++||||||||++.||++|++||++|||++++||+||+|||++||+++....+.++||||+||||||
T Consensus 127 lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~D 206 (554)
T 1yuw_A 127 MKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFD 206 (554)
T ss_dssp HHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEE
T ss_pred HHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999765335688999999999999
Q ss_pred EEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEEe
Q psy7639 2146 VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 2225 (2568)
Q Consensus 2146 vsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i~ 2225 (2568)
||++++.+| .++|+++.||.+|||+|||++|++||.++|+++++.|+..+++++++|+.+||++|+.||.+.++.++++
T Consensus 207 vsv~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~ 285 (554)
T 1yuw_A 207 VSILTIAAG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEID 285 (554)
T ss_dssp EEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEET
T ss_pred EEEEEEcCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEe
Confidence 999999989 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCCCCCc
Q psy7639 2226 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 2305 (2568)
Q Consensus 2226 ~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~np 2305 (2568)
++++|.|+...|||++||++++++++++.++|+++|+++++++.+|+.|+||||+||||.|++.|+++|+++++..++||
T Consensus 286 ~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np 365 (554)
T 1yuw_A 286 SLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINP 365 (554)
T ss_dssp TCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCT
T ss_pred eccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred chhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeec
Q psy7639 2306 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEG 2385 (2568)
Q Consensus 2306 deava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~g 2385 (2568)
|||||+|||+||+.|+++..++++++.+.|++|+|+||++.+|.|.++||||++||++++++|+|..|+|+.+.|+||||
T Consensus 366 ~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~g 445 (554)
T 1yuw_A 366 DEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG 445 (554)
T ss_dssp TTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEES
T ss_pred hhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEec
Confidence 99999999999999998655678899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhh
Q psy7639 2386 ERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 2465 (2568)
Q Consensus 2386 e~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~ 2465 (2568)
|+.++.+|..||+|.|+|+||+|+|.++|+|+|++|.||+|+|++.++.||++.+++|++..++||++||++|++++++|
T Consensus 446 e~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~ 525 (554)
T 1yuw_A 446 ERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKY 525 (554)
T ss_dssp SSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHT
T ss_pred CccccccCcEEEEEEEeCCCCCcccccEEEEEEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999877789999999999999999
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHh
Q psy7639 2466 KDEDERQKERISARNNLEAYVFNVKQAL 2493 (2568)
Q Consensus 2466 ~~~D~~~re~~eakN~lE~~iy~~r~~L 2493 (2568)
+++|++++++.+++|+||+|+|++|++|
T Consensus 526 ~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 526 KAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp TTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998766
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-85 Score=878.63 Aligned_cols=539 Identities=73% Similarity=1.093 Sum_probs=511.5
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH 1455 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k~ 1455 (2568)
.||||||++||+.++.+.+ |..|++.|||+|+|.+. +|..|++++..||.+|++++|||||+.++|+.++..+++
T Consensus 10 DlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~~~~~~ 89 (554)
T 1yuw_A 10 DLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH 89 (554)
T ss_dssp EECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHHHHHHTT
T ss_pred EeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHHHHHhhc
Confidence 5999999999999887766 99999999999999654 699999999999999999999999999999999999999
Q ss_pred cccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCce
Q psy7639 1456 WPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 1535 (2568)
Q Consensus 1456 ~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v 1535 (2568)
|||.++...+++.+.+.+.+..+.|+|++|++++|++|++.|+.++|.++.++||||||+|++.||++|++|++.|||++
T Consensus 90 ~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~~~AGl~~ 169 (554)
T 1yuw_A 90 WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNV 169 (554)
T ss_dssp CSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHTTTCEE
T ss_pred CCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCe
Confidence 99999976677777788877778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhh
Q psy7639 1536 MRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRK 1615 (2568)
Q Consensus 1536 ~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~ 1615 (2568)
+++++||+|||++|+.+.....+.++||||+||||||+|++++.+| .++|+++.|+.++||.+||+.|++|+.++|.++
T Consensus 170 ~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~ 248 (554)
T 1yuw_A 170 LRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248 (554)
T ss_dssp EEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764345688999999999999999999877 889999999999999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC
Q psy7639 1616 YKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDK 1695 (2568)
Q Consensus 1616 ~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~ 1695 (2568)
++.++..+++.+.+|+.+||++|+.||...++.+.++.+.+|.++...|||++|+++++|+++++..+|+++|+++++.+
T Consensus 249 ~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~ 328 (554)
T 1yuw_A 249 HKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDK 328 (554)
T ss_dssp TSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTTCCG
T ss_pred hCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 99998889999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeecccccceeecCc
Q psy7639 1696 SAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 1775 (2568)
Q Consensus 1696 ~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie~~~g 1775 (2568)
.+|+.|+||||+|++|+|+++|+++|++..+..+.||++|||+|||++|+.+++......+++++.|++|+|||+++.+|
T Consensus 329 ~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slgi~~~~g 408 (554)
T 1yuw_A 329 SQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGG 408 (554)
T ss_dssp GGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEEEEETTT
T ss_pred hhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEEEEecCc
Confidence 99999999999999999999999999878888899999999999999999999864445678999999999999999999
Q ss_pred EEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCeeEEE
Q psy7639 1776 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNV 1855 (2568)
Q Consensus 1776 ~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nGiL~V 1855 (2568)
.|.++|+|||+||+++++.|++..|+|+.+.|.|||||+.++.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|
T Consensus 409 ~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v 488 (554)
T 1yuw_A 409 VMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 488 (554)
T ss_dssp EEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTCCEEE
T ss_pred eEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEEEEEEccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7639 1856 TAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL 1920 (2568)
Q Consensus 1856 ~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l 1920 (2568)
++.+..||++++++|+++.++||++||++|++++++++.+|++++++.++||+||+++|+++++|
T Consensus 489 ~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 489 SAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp EEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred EEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888999999999999999999999999999999999999999987654
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-78 Score=805.18 Aligned_cols=461 Identities=54% Similarity=0.866 Sum_probs=434.5
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 2065 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~ 2065 (2568)
+++++|..|+.+..+|| ++++++||+||++|. + . .+| ..|+|++|++++|++
T Consensus 45 ~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~--------------~---------~--~~g--~~~~~~ei~a~~L~~ 96 (509)
T 2v7y_A 45 GERLVGEVAKRQAITNP-NTIISIKRHMGTDYK--------------V---------E--IEG--KQYTPQEISAIILQY 96 (509)
T ss_dssp SSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC--------------E---------E--ETT--EEECHHHHHHHHHHH
T ss_pred CcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE--------------E---------E--ECC--EEEcHHHHHHHHHHH
Confidence 56899999999999999 999999999998542 1 1 133 468999999999999
Q ss_pred HHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeE
Q psy7639 2066 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 2145 (2568)
Q Consensus 2066 lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~d 2145 (2568)
|++.|++++|.++.++|||||+||++.||++|++||++|||++++||+||+|||++||+++. .+.++||||+||||||
T Consensus 97 l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vlV~D~GgGT~D 174 (509)
T 2v7y_A 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE--EDQTILVYDLGGGTFD 174 (509)
T ss_dssp HHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTGGGS--CSEEEEEEEECSSCEE
T ss_pred HHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHhhccC--CCCEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999764 5689999999999999
Q ss_pred EEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEEe
Q psy7639 2146 VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 2225 (2568)
Q Consensus 2146 vsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i~ 2225 (2568)
+|++++.+| .++|+++.||.+|||+|||+.|++||.++|+++++.++..+++++++|+.+||++|+.||...++.++++
T Consensus 175 vsv~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~ 253 (509)
T 2v7y_A 175 VSILELGDG-VFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLP 253 (509)
T ss_dssp EEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEEEEEcCC-eEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 999999888 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC---C-cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCC
Q psy7639 2226 ALYD---G-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL 2301 (2568)
Q Consensus 2226 ~~~~---~-~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~ 2301 (2568)
++++ | .++..+|||++|+++++++++++.++|+++|+++++++.+|+.|+||||+||||.|++.|+++| ++++..
T Consensus 254 ~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~ 332 (509)
T 2v7y_A 254 FISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHK 332 (509)
T ss_dssp EEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHH-SSCCBC
T ss_pred ccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHh-CCCcCc
Confidence 8875 2 5788899999999999999999999999999999999999999999999999999999999999 577889
Q ss_pred CCCcchhHHhhHHHHHHHhhCCCCccccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEE
Q psy7639 2302 SINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQ 2381 (2568)
Q Consensus 2302 ~~npdeava~GAa~~aa~ls~~~~~~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~ 2381 (2568)
..|||||||+|||++|+.|+++ ++++.+.|++|+|+|+++.+|.|.++||||++||++++++|+|..|+|+.+.|+
T Consensus 333 ~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~ 408 (509)
T 2v7y_A 333 GVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIH 408 (509)
T ss_dssp CSCTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCSSEEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEE
T ss_pred CCCchhhhHhhHHHHHHHhcCC----ccCceEEEeeccccceeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEE
Confidence 9999999999999999999983 678999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcccccCCCceeEEEecCCCCCCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHH
Q psy7639 2382 VFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMIND 2461 (2568)
Q Consensus 2382 v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~ 2461 (2568)
|||||+.++.+|..||+|.|+|+||+|+|.++|+|+|++|.||+|+|++.++.||++.+++|+.. ++||++||++|+++
T Consensus 409 v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~~g~~~~~~i~~~-~~l~~~~i~~~~~~ 487 (509)
T 2v7y_A 409 VLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSS-SGLSEEEIQRMIKE 487 (509)
T ss_dssp EEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECSS-CSCCSHHHHHHHHH
T ss_pred EEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEEEEEcCCCcEEEEEEEec-CCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 78999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHhHH
Q psy7639 2462 AERYKDEDERQKERISARNNLE 2483 (2568)
Q Consensus 2462 ~~~~~~~D~~~re~~eakN~lE 2483 (2568)
+++|+++|++++++.++||+||
T Consensus 488 ~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 488 AEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp HHHSCGGGGGGGGCCCC-----
T ss_pred HHHhhhccHHHHHHHHHHhhcC
Confidence 9999999999999999999987
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-76 Score=780.59 Aligned_cols=493 Identities=52% Similarity=0.814 Sum_probs=456.9
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH 1455 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k~ 1455 (2568)
.||||||+++|+.++.+.+ |..|++.|||+|+|.+. +|++|+++...|| ++++++||+||+.+.
T Consensus 8 DlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---------- 76 (509)
T 2v7y_A 8 DLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---------- 76 (509)
T ss_dssp EECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----------
T ss_pred EcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE----------
Confidence 5899999999999887766 89999999999999543 6999999999999 999999999998441
Q ss_pred cccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCce
Q psy7639 1456 WPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 1535 (2568)
Q Consensus 1456 ~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v 1535 (2568)
+.+ .++.|+|++|++++|++|++.++.+++.++.++|||||+||++.||++|++|++.|||++
T Consensus 77 ---------------~~~--~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AGl~~ 139 (509)
T 2v7y_A 77 ---------------VEI--EGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEV 139 (509)
T ss_dssp ---------------EEE--TTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred ---------------EEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCe
Confidence 122 235789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhh
Q psy7639 1536 MRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRK 1615 (2568)
Q Consensus 1536 ~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~ 1615 (2568)
+++++||+|||++|+.+.. .+.++||||+||||||+|++++.+| .++++++.|+..+||.+||+.|++|+.++|+++
T Consensus 140 ~~li~Ep~AAAlay~~~~~--~~~~vlV~D~GgGT~Dvsv~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~ 216 (509)
T 2v7y_A 140 ERIINEPTAAALAYGLDKE--EDQTILVYDLGGGTFDVSILELGDG-VFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQE 216 (509)
T ss_dssp EEEEEHHHHHHHHTTGGGS--CSEEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHhhccC--CCCEEEEEECCCCeEEEEEEEEcCC-eEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998653 5678999999999999999999777 889999999999999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC---C-cceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHc
Q psy7639 1616 YKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD---G-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDA 1691 (2568)
Q Consensus 1616 ~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a 1691 (2568)
++.++..++..+.+|+.+||++|+.||...++.+.++.+.+ | .++.++|||++|+++|+|+++++..+|+++|+++
T Consensus 217 ~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a 296 (509)
T 2v7y_A 217 HGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDA 296 (509)
T ss_dssp HSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99888888999999999999999999998888898886553 3 4577899999999999999999999999999999
Q ss_pred CCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhCCCCccccceEEEeeccccccee
Q psy7639 1692 KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 1771 (2568)
Q Consensus 1692 ~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~~~~~~~~~~~l~dv~p~slGie 1771 (2568)
++.+.+|+.|+||||+|++|+|+++|++.| +..+..+.||++|||+|||++|+.+++. .+++++.|++|+|||++
T Consensus 297 ~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~slgi~ 371 (509)
T 2v7y_A 297 GLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIE 371 (509)
T ss_dssp TCCGGGCSEEEEESGGGGCHHHHHHHHHHH-SSCCBCCSCTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCSSEEEEE
T ss_pred CCChhHCcEEEEECCcccChHHHHHHHHHh-CCCcCcCCCchhhhHhhHHHHHHHhcCC----ccCceEEEeecccccee
Confidence 999999999999999999999999999999 5667889999999999999999999885 35788999999999999
Q ss_pred ecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCceEEEEEEEcCCe
Q psy7639 1772 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANG 1851 (2568)
Q Consensus 1772 ~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~i~v~f~id~nG 1851 (2568)
+.+|.|.++|+|||+||+++++.|++..|+|+.+.|.|||||+.++.+|..||+|.|.++||.|+|.++|+|+|++|.||
T Consensus 372 ~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~g 451 (509)
T 2v7y_A 372 TMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANG 451 (509)
T ss_dssp ETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTS
T ss_pred ecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy7639 1852 ILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 1910 (2568)
Q Consensus 1852 iL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le 1910 (2568)
+|+|++.+..||++.+++|+++ ++||++||++|++++++|+.+|++++++.++||+||
T Consensus 452 il~v~a~~~~~g~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 452 IVHVRAKDLGTNKEQSITIKSS-SGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp CEEEEEEETTTCCEEEEEECSS-CSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred eEEEEEEEcCCCcEEEEEEEec-CCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 9999999999999999999987 789999999999999999999999999999999876
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=564.63 Aligned_cols=336 Identities=79% Similarity=1.155 Sum_probs=324.6
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 2065 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~ 2065 (2568)
+.+++|..|+.+..++|.++++++||+||++++|+.++...+.|||.++..+|.+.+.+.+.++...|+|++|++++|++
T Consensus 66 ~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~ 145 (404)
T 3i33_A 66 TERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTK 145 (404)
T ss_dssp SCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHH
T ss_pred CCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999899999999998888899999999999999
Q ss_pred HHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcC--CcceEEEEeeCCee
Q psy7639 2066 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK--GERNVLIFDLGGGT 2143 (2568)
Q Consensus 2066 lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~--~~~~vlv~DlGggt 2143 (2568)
|++.|+.++|.++.++|||||+||++.||+++++||+.|||+++++|+||+|||++|++..... .+.+++|||+||||
T Consensus 146 l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT 225 (404)
T 3i33_A 146 MKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGT 225 (404)
T ss_dssp HHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSC
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999876533 56889999999999
Q ss_pred eEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEE
Q psy7639 2144 FDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE 2223 (2568)
Q Consensus 2144 ~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~ 2223 (2568)
||+|++++.++ .++|+++.||.++||++||+.|++|+.++|+++++.++..+++++.+|+.+||++|+.||...++.+.
T Consensus 226 ~dvsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~ 304 (404)
T 3i33_A 226 FDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIE 304 (404)
T ss_dssp EEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred EEEEEEEEeCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEE
Confidence 99999999988 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCCCC
Q psy7639 2224 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI 2303 (2568)
Q Consensus 2224 i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~ 2303 (2568)
++++++|.++...|||++|+++++++++++.++++++|+++++...+|+.|+||||+||+|.|++.|+++|++.++....
T Consensus 305 ~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~ 384 (404)
T 3i33_A 305 IDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSI 384 (404)
T ss_dssp EEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSS
T ss_pred EeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred CcchhHHhhHHHHHHHhhC
Q psy7639 2304 NPDEAVAYGAAVQAAILSG 2322 (2568)
Q Consensus 2304 npdeava~GAa~~aa~ls~ 2322 (2568)
||++|||+|||++|++|+|
T Consensus 385 ~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 385 NPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp CTTTHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999987
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-53 Score=551.53 Aligned_cols=369 Identities=73% Similarity=1.058 Sum_probs=348.1
Q ss_pred HHhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1380 ERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1380 ~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
..||||||++||+.++.+.+ |..|++.|||+|+|... +|..|+.++..+|.++++++||+||+.++|+.++..++
T Consensus 28 ID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~~~~~~~ 107 (404)
T 3i33_A 28 IDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMK 107 (404)
T ss_dssp EEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHHHHHHHT
T ss_pred EEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcHHHHHHHh
Confidence 35999999999999988777 88999999999999654 69999999999999999999999999999999999999
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
.|||.++...+++.+.|.+.+....++|+++++++|++|++.++.+++.++.+||||||++|++.||++|++|++.|||+
T Consensus 108 ~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~ 187 (404)
T 3i33_A 108 HWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLN 187 (404)
T ss_dssp TCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHHHTCE
T ss_pred hCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 99999998777888888887767899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhcccccc--CcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHH
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLK--GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~--~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~ 1612 (2568)
++++++||+|||++|+...... .+.++||||+||||+|++++++.++ .++++++.|+..+||.+||+.|++++.++|
T Consensus 188 ~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 266 (404)
T 3i33_A 188 VLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSHLAEEF 266 (404)
T ss_dssp EEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998876432 6788999999999999999999777 889999999999999999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q psy7639 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAK 1692 (2568)
Q Consensus 1613 ~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~ 1692 (2568)
.++++.+...+++.+.+|+.+||++|+.||......+.++.+.++.++...|+|++|+++++|+++++.++|.++|++++
T Consensus 267 ~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~ 346 (404)
T 3i33_A 267 KRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAK 346 (404)
T ss_dssp HHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHT
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999889999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHhC
Q psy7639 1693 LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 1749 (2568)
Q Consensus 1693 ~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~ 1749 (2568)
+...+|+.|+||||+|++|+|++.|++.|++..+..+.||++|||+|||++|++++|
T Consensus 347 ~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 347 LDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp CCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred CCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998788888999999999999999999876
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=544.52 Aligned_cols=335 Identities=33% Similarity=0.519 Sum_probs=309.5
Q ss_pred CCCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEc----CceeeeChhhhHH
Q psy7639 1985 GDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK----GERKTFAPEEISS 2060 (2568)
Q Consensus 1985 ~~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~----~~~~~~~peei~a 2060 (2568)
++.+++|..|+.+..++|.++++.+||+||++++++.++.. .+++.+++.+|.+.+.+... ++...++|+||++
T Consensus 55 ~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~ 132 (409)
T 4gni_A 55 DGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIAT 132 (409)
T ss_dssp TTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCCGGG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHH
T ss_pred CCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhhhhh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHH
Confidence 35678999999999999999999999999999999877654 45666677788888887654 3567899999999
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhccccc-CcCCcceEEEEee
Q psy7639 2061 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK-NLKGERNVLIFDL 2139 (2568)
Q Consensus 2061 ~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~-~~~~~~~vlv~Dl 2139 (2568)
++|++|++.|+.++|.++.++|||||+||++.||+++++||+.|||++++||+||+|||++|+... ....+.+++|||+
T Consensus 133 ~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~ 212 (409)
T 4gni_A 133 RYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADL 212 (409)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999865 2235688999999
Q ss_pred CCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHHHhhccCCc
Q psy7639 2140 GGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK--KDMSVNPRALRRLRTAAERAKRTLSSS 2217 (2568)
Q Consensus 2140 Gggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~--~d~~~~~~~~~~L~~~~e~~K~~LS~~ 2217 (2568)
||||||+|++++.+| .++|+++.||.++||++||+.|++||.++|.++++ .+...+++++.+|+.+||++|+.||.+
T Consensus 213 GgGT~dvsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~ 291 (409)
T 4gni_A 213 GGSRSDVTVLASRSG-MYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRS 291 (409)
T ss_dssp CSSCEEEEEEEEETT-EEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEEEeCC-eEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 89999999999999999999999999999999999 888899999999999999999999999
Q ss_pred ceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCC
Q psy7639 2218 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK 2297 (2568)
Q Consensus 2218 ~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~ 2297 (2568)
.++.+.+++++++.++..+|||++||++++++++++.++|+++|++++++..+|+.|+||||+||||.|++.|+++|+..
T Consensus 292 ~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~ 371 (409)
T 4gni_A 292 TNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPES 371 (409)
T ss_dssp SEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTT
T ss_pred CceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred -CC------CCCCCcchhHHhhHHHHHHHhhC
Q psy7639 2298 -SL------NLSINPDEAVAYGAAVQAAILSG 2322 (2568)
Q Consensus 2298 -~~------~~~~npdeava~GAa~~aa~ls~ 2322 (2568)
.+ ...+|||||||+|||++|+....
T Consensus 372 ~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 372 TRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp SEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred cccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 23 68899999999999999998764
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=528.65 Aligned_cols=368 Identities=31% Similarity=0.480 Sum_probs=327.6
Q ss_pred HHhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1380 ERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1380 ~~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
..||||||++||+.++...+ |..|++.+||+|+|.+. +|..|+.++..+|.++++++||++|+.++++.++..
T Consensus 18 IDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~~~~-- 95 (409)
T 4gni_A 18 ITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHN-- 95 (409)
T ss_dssp EEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCCGGG--
T ss_pred EEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhhhhh--
Confidence 35999999999998777776 89999999999999655 599999999999999999999999999988766554
Q ss_pred ccccEEeeCCCCCceeEEec----CCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHH
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFK----GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 1530 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~----~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~ 1530 (2568)
.+++.+....+.+.+.+... +.++.++|+||++++|++|++.++.+++.++.++|||||++|++.||++|++|++.
T Consensus 96 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~ 175 (409)
T 4gni_A 96 HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAA 175 (409)
T ss_dssp TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 34444444444444444333 24578999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEechhHHHHHhhccc-cccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHH
Q psy7639 1531 AGLNVMRIVNEPTAAALAYGLDK-NLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 1609 (2568)
Q Consensus 1531 AGL~v~~li~EPtAAal~y~~~~-~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~ 1609 (2568)
|||+++++++||+|||++|+... ....+..+||||+||||+|+|++++.++ .++++++.++..+||.+||+.|++++.
T Consensus 176 AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~i~~~l~ 254 (409)
T 4gni_A 176 ADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSG-MYTILATVHDYEYHGIALDKVLIDHFS 254 (409)
T ss_dssp TTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCC-eEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999998764 2356788999999999999999999877 889999999999999999999999999
Q ss_pred HHHHhhhc--CCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHH
Q psy7639 1610 EEFKRKYK--KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKA 1687 (2568)
Q Consensus 1610 ~~~~~~~~--~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~ 1687 (2568)
.+|..+++ .+...+++.+.+|+.+||++|+.||....+.+.++.+.++.++..+|||++|+++++|+++++..+|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~ 334 (409)
T 4gni_A 255 KEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESA 334 (409)
T ss_dssp HHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 7777889999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCC-cc------cccCCchhhhhccHHHHHHHHhCC
Q psy7639 1688 LQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK-SL------NLSINPDEAVAYGAAVQAAILSGD 1750 (2568)
Q Consensus 1688 L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~-~v------~~~~nP~eAVA~GAai~a~~l~~~ 1750 (2568)
|+++++...+|+.|+||||+|++|+|++.|++.|+.. .+ ....||++|||+|||++|+.....
T Consensus 335 l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~ 404 (409)
T 4gni_A 335 VKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQEH 404 (409)
T ss_dssp HHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred HHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999655 34 578899999999999999988754
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=521.50 Aligned_cols=329 Identities=54% Similarity=0.839 Sum_probs=305.9
Q ss_pred CCCChhHHHHhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEE-ecCCCceEEEEEcCceeeeChhhhHHHHHH
Q psy7639 1986 DMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV-NDCSKPKIQVEFKGERKTFAPEEISSMVLT 2064 (2568)
Q Consensus 1986 ~~~~~G~~A~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~peei~a~iL~ 2064 (2568)
+++++|..|+.+..++|+++++++||+||++|+|+.++...+.+||.++ ..+|.+.+.+ .+ +.++|++|++++|+
T Consensus 46 ~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~ 121 (383)
T 1dkg_D 46 GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLK 121 (383)
T ss_dssp SCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHH
T ss_pred CCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEE--CC--EEEcHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999987 4566666665 44 58999999999999
Q ss_pred HHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeee
Q psy7639 2065 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 2144 (2568)
Q Consensus 2065 ~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~ 2144 (2568)
+|++.|+.++|.++.++|||||+||++.||+++++|++.|||+++++++||+|||++|++... ..+.++||||+|||||
T Consensus 122 ~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lVvD~Gggtt 200 (383)
T 1dkg_D 122 KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTF 200 (383)
T ss_dssp HHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC--CCEEEEEEEEECSSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHHHhccC-CCCcEEEEEEcCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999998753 2467899999999999
Q ss_pred EEEEEEEc----CCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCccee
Q psy7639 2145 DVSILSID----EGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEA 2220 (2568)
Q Consensus 2145 dvsil~~~----~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~ 2220 (2568)
|+|++++. +| .++|+++.|+.++||++||+.|++|+.++|.++++.++..+++++.+|+.+||++|+.||...++
T Consensus 201 dvsv~~~~~~~~~~-~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~ 279 (383)
T 1dkg_D 201 DISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT 279 (383)
T ss_dssp EEEEEEEEC----C-CCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred EEEEEEEEecCCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce
Confidence 99999997 67 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccC---C-cceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCC
Q psy7639 2221 SIEIDALYD---G-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG 2296 (2568)
Q Consensus 2221 ~~~i~~~~~---~-~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~ 2296 (2568)
.+.++.+++ | .++..+|||++|+++++++++++.++++++|+++++.+.+|+.|+|+||+||+|.|++.|++.| +
T Consensus 280 ~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~-~ 358 (383)
T 1dkg_D 280 DVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-G 358 (383)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH-S
T ss_pred EEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHh-C
Confidence 999987765 3 5678899999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCCCCCCcchhHHhhHHHHHHHhh
Q psy7639 2297 KSLNLSINPDEAVAYGAAVQAAILS 2321 (2568)
Q Consensus 2297 ~~~~~~~npdeava~GAa~~aa~ls 2321 (2568)
.++....||++|||+|||++|++||
T Consensus 359 ~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 359 KEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp SCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred CCCCCCcChHHHHHHHHHHHHHhhC
Confidence 6788899999999999999999875
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-49 Score=509.77 Aligned_cols=361 Identities=50% Similarity=0.761 Sum_probs=324.9
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||+++++.++.+.+ |..|++.+||+|+|..+ +|..|+++...+|.++++++||+||+.++|+.++.+.+
T Consensus 8 DlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~ 87 (383)
T 1dkg_D 8 DLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVS 87 (383)
T ss_dssp ECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTT
T ss_pred EcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHHHHHhh
Confidence 5999999999999887666 88999999999999532 59999999999999999999999999999999999999
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
.+||.++.... ....+.+ .++.++|++|++++|++|++.++.+++.++.++|||||++|++.||++|++|++.|||+
T Consensus 88 ~~p~~~~~~~~-~~~~~~~--~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aGl~ 164 (383)
T 1dkg_D 88 IMPFKIIAADN-GDAWVEV--KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLE 164 (383)
T ss_dssp TCSSEEEECSS-SBEEEEE--TTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCE
T ss_pred cCCeEEEEcCC-CcEEEEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 99999875432 2333444 34689999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEec----CCcEEEEEEecCCCCCChhHHHHHHHHHHHH
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID----EGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 1610 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~----~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~ 1610 (2568)
++.+++||+|||++|+.+.. ..+.++||||+||||+|+++++.. ++ .++++++.|+..+||.+||+.|++++.+
T Consensus 165 ~~~li~Ep~Aaa~~~~~~~~-~~~~~~lVvD~Gggttdvsv~~~~~~~~~~-~~~v~~~~~~~~lGG~~id~~l~~~l~~ 242 (383)
T 1dkg_D 165 VKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVE 242 (383)
T ss_dssp ESCCCBHHHHHHHHHTCCC--CCEEEEEEEEECSSCEEEEEEEEEC----C-CCEEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHhccC-CCCcEEEEEEcCCCeEEEEEEEEEecCCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987653 256789999999999999999986 45 6789999998899999999999999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccC---C-cceeeecCHHHHHHHHhHHHHHHHHHHHH
Q psy7639 1611 EFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD---G-IDFYTKISRARFEELCSDLFRSTLQPVEK 1686 (2568)
Q Consensus 1611 ~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~fe~l~~pli~~i~~~i~~ 1686 (2568)
+|..+++.++..++..+.+|+..||++|+.||...+..+.++.+.+ | .++.++|||++|+++++|+++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~ 322 (383)
T 1dkg_D 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKV 322 (383)
T ss_dssp HHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888999999999999999999998888888876543 3 45677999999999999999999999999
Q ss_pred HHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHH
Q psy7639 1687 ALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1747 (2568)
Q Consensus 1687 ~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l 1747 (2568)
+|+++++.+.+|+.|+|+||+|++|+|+++|++.| +..+..+.||++|||+|||++|+++
T Consensus 323 ~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~l 382 (383)
T 1dkg_D 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382 (383)
T ss_dssp HHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTT
T ss_pred HHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHh-CCCCCCCcChHHHHHHHHHHHHHhh
Confidence 99999998899999999999999999999999999 4567788999999999999999765
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=380.58 Aligned_cols=216 Identities=47% Similarity=0.726 Sum_probs=208.1
Q ss_pred eEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCC
Q psy7639 2331 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410 (2568)
Q Consensus 2331 ~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g 2410 (2568)
++++||+|+||||++.||.|.+||||||+||++++++|+|..|||+.+.|+|||||+.++.+|.+||+|.|+||||+|+|
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G 80 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTT
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHH
Q psy7639 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVK 2490 (2568)
Q Consensus 2411 ~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r 2490 (2568)
.|+|+|+|++|.||+|+|+|.++.||++..++|++. ++||++||++|++++++|+++|++.|++++++|+||+|+|++|
T Consensus 81 ~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~-~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~ 159 (219)
T 4e81_A 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTR 159 (219)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT-CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCCCEeeeeeccccCccceEeeecc-ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986 5799999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7639 2491 QALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 2550 (2568)
Q Consensus 2491 ~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi~~r~~e 2550 (2568)
++|++.++++++++|++|+++|+++++||+++ ++++|++++++|+++|.||..|+|+
T Consensus 160 ~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 160 KQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998778999999999999999999999986 6999999999999999999999886
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=365.43 Aligned_cols=216 Identities=47% Similarity=0.726 Sum_probs=208.0
Q ss_pred eEEEeecccccceeecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCC
Q psy7639 1758 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1837 (2568)
Q Consensus 1758 ~~l~dv~p~slGie~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g 1837 (2568)
++|+||+|+||||++.+|.|.+||||||+||++++++|+|..|||+.+.|.|||||+.++.+|.+||+|.|.|+||+|+|
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G 80 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTT
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEcCCeeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7639 1838 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVK 1917 (2568)
Q Consensus 1838 ~~~i~v~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~ 1917 (2568)
.++|+|+|+||.||+|+|+|.|..||++.+++|+++ +.||++||++|++++++|+.+|++.++++++||++|+++|+++
T Consensus 81 ~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~-~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~ 159 (219)
T 4e81_A 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTR 159 (219)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT-CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCCCEeeeeeccccCccceEeeecc-ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986 5699999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1918 QALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1918 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
+.|++.++++++++++.+...|+++++||+.+ +.++|+.++++|+++|+||++++|+
T Consensus 160 ~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 160 KQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998899999999999999999999999876 7899999999999999999999987
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=355.57 Aligned_cols=214 Identities=32% Similarity=0.524 Sum_probs=206.3
Q ss_pred eeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCCCcc
Q psy7639 2334 VDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 2413 (2568)
Q Consensus 2334 ~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~ 2413 (2568)
+||+|+||||++.||.|.+||||||+||++++++|+|..|+|+.|.|+|||||+.++.+|..||+|.|+|+||+|+|.|+
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHh
Q psy7639 2414 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL 2493 (2568)
Q Consensus 2414 i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L 2493 (2568)
|+|+|++|.||+|+|++.++.||++..++|... ++||+++|++|++++++|+.+|++++++++++|+||+|+|++|++|
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~-~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l 159 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL 159 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCC-SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEec-cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 5699999999999999999999999999999999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7639 2494 DNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGG 2551 (2568)
Q Consensus 2494 ~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi~~r~~e~ 2551 (2568)
.+..+++++++|++|.++|+++++||+++ ++++|++++++|++++.||..|+|..
T Consensus 160 ~~~~~~~~~~~k~~i~~~l~~~~~wl~~~---d~~~~~~~~~~L~~~~~~i~~r~~~~ 214 (227)
T 1u00_A 160 AADAALLSAAERQVIDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQ 214 (227)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88778999999999999999999999954 58999999999999999999998753
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=334.92 Aligned_cols=213 Identities=32% Similarity=0.528 Sum_probs=205.6
Q ss_pred EeecccccceeecCcEEEEEEecCCccccccEEEEEeecCCCceEEEEEEecccccccCCceeeeeEecCCCCCCCCCce
Q psy7639 1761 VDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1840 (2568)
Q Consensus 1761 ~dv~p~slGie~~~g~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~vyeGe~~~~~~n~~lg~~~l~~ipp~~~g~~~ 1840 (2568)
+||+|++|||++.+|.|.+||||||+||++++++|+|..|+|+.+.|.|||||+.++.+|..||+|.|.|+||+|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEcCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7639 1841 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQAL 1920 (2568)
Q Consensus 1841 i~v~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l 1920 (2568)
|+|+|+||.||+|+|++.+..||++..++|+++ +.||++||++|++++++|+.+|+++++++++||+||+|+|++++.|
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~-~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l 159 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL 159 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCC-SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEec-cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 5699999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccC
Q psy7639 1921 DNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1921 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
++.++++++++++.+...|+++++||+.+ +.++|++++++|++.+.||..++|.
T Consensus 160 ~~~~~~~~~~~k~~i~~~l~~~~~wl~~~---d~~~~~~~~~~L~~~~~~i~~r~~~ 213 (227)
T 1u00_A 160 AADAALLSAAERQVIDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMD 213 (227)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999843 6899999999999999999998874
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=356.20 Aligned_cols=311 Identities=23% Similarity=0.301 Sum_probs=242.6
Q ss_pred cccccccCcccccchhhhccCCCCceeeecccccccccccCC-Cc-eeecHHHHHhHhhCCCchHHhhhhhcCCCCCChh
Q psy7639 2 KESYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSLTNP-LS-YFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPK 79 (2568)
Q Consensus 2 ~~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~~~~-~~-~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 79 (2568)
..+||||||+++++|.. .++ +..+..+++.++.. ++ ++||++|+++..++|.++...
T Consensus 4 ~~igIDlGT~~s~v~~~----~~~----~~~~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~------------- 62 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLR----GKG----IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI------------- 62 (344)
T ss_dssp CEEEEEECSSEEEEEET----TTE----EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE-------------
T ss_pred ceEEEEcCcCcEEEEEC----CCC----EEEeeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE-------------
Confidence 46899999999999863 222 33467888888765 44 489999999988888876421
Q ss_pred HHhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q psy7639 80 IQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (2568)
Q Consensus 80 v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa 159 (2568)
+|+. ++ . +. ....++++++++|++++.. ..++ ...+|||||++|++.||+++++|+
T Consensus 63 -------~p~~----~g---~---i~---~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~ 118 (344)
T 1jce_A 63 -------RPMR----DG---V---IA---DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAG 118 (344)
T ss_dssp -------CCEE----TT---E---ES---SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHH
T ss_pred -------ecCC----CC---e---eC---ChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHH
Confidence 2321 00 0 00 1124677777777776543 1233 478999999999999999999999
Q ss_pred HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHH
Q psy7639 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (2568)
Q Consensus 160 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l 239 (2568)
+.||++++.+++||+|||++|+... ..+..++|||+||||||+++++.. ..+ ..++..+||.+||+.|.+++
T Consensus 119 ~~aG~~~~~li~ep~Aaa~~~~~~~--~~~~~~lVvDiGggttdvsv~~~~--~~~----~~~~~~lGG~~id~~l~~~l 190 (344)
T 1jce_A 119 LEAGASKVFLIEEPMAAAIGSNLNV--EEPSGNMVVDIGGGTTEVAVISLG--SIV----TWESIRIAGDEMDEAIVQYV 190 (344)
T ss_dssp HHTTCSEEEEEEHHHHHHHHTTCCT--TSSSCEEEEEECSSCEEEEEEETT--EEE----EEEEESCSHHHHHHHHHHHH
T ss_pred HHcCCCeEeccCCHHHHHHhcCCCC--CCCceEEEEEeCCCeEEEEEEEcC--CEE----eeCCCCccChhHHHHHHHHH
Confidence 9999999999999999999998763 356789999999999999999873 222 23568899999999999998
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCc------eEEEEe--eeccCcceEEeecHHHHHHHHhhhhhhh
Q psy7639 240 AEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE------ASIEID--ALYDGIDFYTKISRARFEELCSDLFRST 311 (2568)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~------~~i~i~--~l~~~~d~~~~itR~efe~l~~~l~~~i 311 (2568)
.+++ +.++. +..||++|+.|+.... ..+.++ .+.+|.+..++|+|++|+++++|+++++
T Consensus 191 ~~~~----~~~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i 257 (344)
T 1jce_A 191 RETY----RVAIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAI 257 (344)
T ss_dssp HHHH----CEECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHH
T ss_pred HHHh----CcccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHH
Confidence 7664 33221 4679999999997642 244443 3456777889999999999999999999
Q ss_pred HHHHHHHHHHcCCC--CCCC-CeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHc
Q psy7639 312 LQPVEKALQDAKLD--KSAI-HDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379 (2568)
Q Consensus 312 ~~~i~~~l~~a~~~--~~~i-~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls 379 (2568)
.+.|+++|+.++.. ...+ +.|+|+||+|++|+++++|++.| +.++..+.||++|||+||+++|+.++
T Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 258 VESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHH-CCCccccCChHHHHHHHHHHHHhChH
Confidence 99999999987632 1224 68999999999999999999999 56777788999999999999997554
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=306.45 Aligned_cols=150 Identities=68% Similarity=1.113 Sum_probs=142.3
Q ss_pred EeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCCCCCC
Q psy7639 1239 LVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 1318 (2568)
Q Consensus 1239 ~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~~ 1318 (2568)
+.||+|+||||++.+|.|.+||++|+++|+++++.|+|++|||++|.|+||+||+.++++|.+||+|.|.||||+|+|+|
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCccccEEEeecCCCCCHHHHHHHHHHHHhhhhhhHHHHHHhcccccE
Q psy7639 1319 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNL 1388 (2568)
Q Consensus 1319 ~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lGttns~ 1388 (2568)
+|+|+|++|+||+|+|+|+|+.||+++.|+|.+.+++||++||++|+++|++|+.+|++++......|++
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~l 151 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQL 151 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEE
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=353.50 Aligned_cols=302 Identities=22% Similarity=0.280 Sum_probs=234.5
Q ss_pred HhcccccEEEEEEcccccccccCCcccccccccchh------hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE------ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~n~~g~~~tPS~v~~~~~------~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.|||+||++++..++ +.++ +||+|+|.+. +|++|+++...+|.++....
T Consensus 9 DlGT~~s~v~~~~~~-~~~~------~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~------------------ 63 (344)
T 1jce_A 9 DLGTANTLVFLRGKG-IVVN------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIR------------------ 63 (344)
T ss_dssp EECSSEEEEEETTTE-EEEE------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEEC------------------
T ss_pred EcCcCcEEEEECCCC-EEEe------eCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEEe------------------
Confidence 589999999875433 2223 8999999543 59999999888888865321
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
|+. +.. +. ....++++.+++|++++.. .+++ ...+|||||++|++.||+++++|++.||++
T Consensus 64 --p~~------~g~----i~---~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~aG~~ 124 (344)
T 1jce_A 64 --PMR------DGV----IA---DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGLEAGAS 124 (344)
T ss_dssp --CEE------TTE----ES---SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHHHTTCS
T ss_pred --cCC------CCe----eC---ChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 110 000 00 1123677777777776653 1344 489999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
++.+++||+|||++|+.+. ..+.++||||+||||+|+++++. +..+ ..++..+||.+||+.|++++.+++
T Consensus 125 ~~~li~ep~Aaa~~~~~~~--~~~~~~lVvDiGggttdvsv~~~--~~~~----~~~~~~lGG~~id~~l~~~l~~~~-- 194 (344)
T 1jce_A 125 KVFLIEEPMAAAIGSNLNV--EEPSGNMVVDIGGGTTEVAVISL--GSIV----TWESIRIAGDEMDEAIVQYVRETY-- 194 (344)
T ss_dssp EEEEEEHHHHHHHHTTCCT--TSSSCEEEEEECSSCEEEEEEET--TEEE----EEEEESCSHHHHHHHHHHHHHHHH--
T ss_pred eEeccCCHHHHHHhcCCCC--CCCceEEEEEeCCCeEEEEEEEc--CCEE----eeCCCCccChhHHHHHHHHHHHHh--
Confidence 9999999999999998754 34678999999999999999985 4222 245678999999999999987654
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCe------eEEEEc--cccCCcceeeecCHHHHHHHHhHHHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTE------ASIEID--ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEK 1686 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~------~~i~i~--~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~ 1686 (2568)
+.+.. ...||++|+.++.... ..+.++ .+.+|.++.++|+|++|+++++|+++++.++|.+
T Consensus 195 --~~~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~ 263 (344)
T 1jce_A 195 --RVAIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRT 263 (344)
T ss_dssp --CEECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHH
T ss_pred --CcccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 4689999999986542 345554 2346667788999999999999999999999999
Q ss_pred HHHHcCCC--Cccc-cEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHh
Q psy7639 1687 ALQDAKLD--KSAI-HDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748 (2568)
Q Consensus 1687 ~L~~a~~~--~~~I-d~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~ 1748 (2568)
+|++++.. .+.+ +.|+|+||+|++|.|+++|++.|+ .++....||++|||+||++++..++
T Consensus 264 ~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~-~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 264 TLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG-ISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHS-SCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHC-CCccccCChHHHHHHHHHHHHhChH
Confidence 99987532 2234 689999999999999999999994 5677788999999999999986543
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=313.01 Aligned_cols=164 Identities=55% Similarity=0.889 Sum_probs=155.3
Q ss_pred cceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCC
Q psy7639 2329 QDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 2408 (2568)
Q Consensus 2329 ~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~ 2408 (2568)
..+.++||+|+||||++.+|.|.+||||||+||++++++|+|..|||+.+.|+|||||+.++.+|..||+|.|+|+||+|
T Consensus 18 ~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~p 97 (182)
T 3n8e_A 18 LYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAP 97 (182)
T ss_dssp ------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCC
T ss_pred CCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHH
Q psy7639 2409 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFN 2488 (2568)
Q Consensus 2409 ~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~ 2488 (2568)
+|.|+|+|+|++|.||+|+|+|.++.||++..++|.+. ++||++||++|++++++|+++|+++|+++++||+||+|+|+
T Consensus 98 ~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~ 176 (182)
T 3n8e_A 98 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHD 176 (182)
T ss_dssp TTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy7639 2489 VKQAL 2493 (2568)
Q Consensus 2489 ~r~~L 2493 (2568)
+|++|
T Consensus 177 ~~~~l 181 (182)
T 3n8e_A 177 TETKM 181 (182)
T ss_dssp CSCCC
T ss_pred HHHhh
Confidence 98765
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=302.14 Aligned_cols=150 Identities=64% Similarity=1.034 Sum_probs=146.4
Q ss_pred EeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCCCCCC
Q psy7639 1239 LVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 1318 (2568)
Q Consensus 1239 ~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~~ 1318 (2568)
+.||+|+||||++.+|.|.+||++|++||+++++.|+|++|||++|.|+||+||+.++++|.+||+|.|.||||+|+|+|
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCccccEEEeecCCCCCHHHHHHHHHHHHhhhhhhHHHHHHhcccccE
Q psy7639 1319 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNL 1388 (2568)
Q Consensus 1319 ~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lGttns~ 1388 (2568)
+|+|+|++|+||+|+|+|.|+.||+++.|+|.+.+++||++||++|+++|++|+.+|++++......|++
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~l 151 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKL 151 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998889999999999999999999999999999988875
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=301.70 Aligned_cols=149 Identities=57% Similarity=0.930 Sum_probs=143.6
Q ss_pred EeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCCCCCC
Q psy7639 1239 LVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 1318 (2568)
Q Consensus 1239 ~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~~ 1318 (2568)
+.||+|+||||++.+|.|.+||+||+++|+++++.|+|++|||++|.|+||+||+.++++|.+||+|.|.||||+|+|+|
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCccccEEEeecCCCCCHHHHHHHHHHHHhhhhhhHHHHHHhcccccE
Q psy7639 1319 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNL 1388 (2568)
Q Consensus 1319 ~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lGttns~ 1388 (2568)
+|+|+|++|+||+|+|+|+|+.||+++.|+|.+. ++||++||++|+++|++|+.+|++++......|++
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~ 150 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQA 150 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999987 77999999999999999999999999988888764
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=308.04 Aligned_cols=160 Identities=56% Similarity=0.913 Sum_probs=151.8
Q ss_pred eeEeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCCCC
Q psy7639 1237 VLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1316 (2568)
Q Consensus 1237 ~~~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g 1316 (2568)
..++||+|+||||++.+|.|.+||+||++||+++++.|+|+.|||++|.|+||+||+.++++|.+||+|.|.||||+|+|
T Consensus 20 f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~p~G 99 (182)
T 3n8e_A 20 FQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRG 99 (182)
T ss_dssp ----CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTT
T ss_pred EEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEecCCCceEEEEeeCCCCccccEEEeecCCCCCHHHHHHHHHHHHhhhhhhHHHHHHhcccccEEEEEEccc
Q psy7639 1317 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVK 1396 (2568)
Q Consensus 1317 ~~~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lGttns~~a~~~~~~ 1396 (2568)
+|+|+|||++|+||+|+|+|.|+.||+++.|+|.+. ++||++||++|+++|++++.+|++++.+....|++.+|+++.+
T Consensus 100 ~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~~~ 178 (182)
T 3n8e_A 100 VPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTE 178 (182)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 7799999999999999999999999999999999988887655
Q ss_pred c
Q psy7639 1397 Q 1397 (2568)
Q Consensus 1397 ~ 1397 (2568)
.
T Consensus 179 ~ 179 (182)
T 3n8e_A 179 T 179 (182)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=291.29 Aligned_cols=151 Identities=69% Similarity=1.115 Sum_probs=143.1
Q ss_pred EeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCCCc
Q psy7639 2333 LVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 2412 (2568)
Q Consensus 2333 ~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 2412 (2568)
+.||+|+||||++.||.|.+||||||+||++++++|+|..|||+.+.|+|||||+.++.+|.+||+|.|+|+||+|+|.|
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Q psy7639 2413 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 2483 (2568)
Q Consensus 2413 ~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE 2483 (2568)
+|+|+|++|.||+|+|+|.++.||++..++|.++.++||++||++|++++++|+++|++.|+++++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999987789999999999999999999999999999999886
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=289.38 Aligned_cols=151 Identities=65% Similarity=1.037 Sum_probs=147.4
Q ss_pred EeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCCCc
Q psy7639 2333 LVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 2412 (2568)
Q Consensus 2333 ~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 2412 (2568)
+.||+|+||||++.||.|.+||||||+||++++++|+|..|||+.+.|+|||||+.++.+|.+||+|.|+|+||+|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Q psy7639 2413 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 2483 (2568)
Q Consensus 2413 ~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE 2483 (2568)
+|+|+|++|.||+|+|+|.++.||++..++|.+..++||++||++|++++++|+++|++.|+++++||+||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999987899999999999999999999999999999999986
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=289.04 Aligned_cols=150 Identities=58% Similarity=0.934 Sum_probs=145.5
Q ss_pred EeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCCCc
Q psy7639 2333 LVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 2412 (2568)
Q Consensus 2333 ~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 2412 (2568)
+.||+|+||||++.||.|.+||||||+||++++++|+|..|||+.+.|+|||||+.++.+|.+||+|.|+|+||+|+|.|
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Q psy7639 2413 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 2483 (2568)
Q Consensus 2413 ~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE 2483 (2568)
+|+|+|++|.||+|+|+|.++.||++..++|.+. ++||++||++|++++++|+++|++.|+++++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999987 899999999999999999999999999999999875
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=277.19 Aligned_cols=150 Identities=59% Similarity=0.985 Sum_probs=145.9
Q ss_pred EeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCCCCCC
Q psy7639 1239 LVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 1318 (2568)
Q Consensus 1239 ~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~~ 1318 (2568)
++|++|+||||++.+|.|.+|+++|+++|+++++.|+|.+|||++|.|+||+||+.++++|.+||+|.|.||||+|+|+|
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCccccEEEeecCCCCCHHHHHHHHHHHHhhhhhhHHHHHHhcccccE
Q psy7639 1319 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNL 1388 (2568)
Q Consensus 1319 ~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lGttns~ 1388 (2568)
+|+|+|++|+||+|+|+|.|+.||+++.|+|....++||++|+++|++++++++.+|++.+......|.+
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~ 151 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNEL 151 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEE
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988788999999999999999999999999999988875
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=269.57 Aligned_cols=151 Identities=60% Similarity=0.988 Sum_probs=146.5
Q ss_pred EeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCCCc
Q psy7639 2333 LVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 2412 (2568)
Q Consensus 2333 ~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 2412 (2568)
++||+|+||||++.+|.|.+|||||++||++++++|+|..|||+.+.|+|||||+.++.+|..||+|.|.|+||+|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Q psy7639 2413 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 2483 (2568)
Q Consensus 2413 ~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE 2483 (2568)
+|+|+|++|.||+|+|++.++.||++..++|....++||+++|++|++++++|+.+|++.+++.++||+||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999876789999999999999999999999999999999886
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-25 Score=242.37 Aligned_cols=120 Identities=62% Similarity=0.964 Sum_probs=111.9
Q ss_pred cceeEeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCC
Q psy7639 1235 QDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1314 (2568)
Q Consensus 1235 ~~~~~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 1314 (2568)
+++.++|++|+||||++.+|.|.+|+++|+++|+++++.|+|+.|||++|+|+||+||+.++++|++||+|.|.||||+|
T Consensus 15 ~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~p 94 (135)
T 1q5l_A 15 RGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAP 94 (135)
T ss_dssp ------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSCC
T ss_pred CcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEecCCCceEEEEeeCCCCccccEEEeecCC
Q psy7639 1315 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1354 (2568)
Q Consensus 1315 ~g~~~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~ 1354 (2568)
+|+|+|+|+|++|+||+|+|+|+|+.||++++|+|++.++
T Consensus 95 ~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~ 134 (135)
T 1q5l_A 95 RGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 134 (135)
T ss_dssp SSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCC
T ss_pred CceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCC
Confidence 9999999999999999999999999999999999998653
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-24 Score=270.37 Aligned_cols=229 Identities=16% Similarity=0.174 Sum_probs=177.6
Q ss_pred eeeChhhhHHHHHHHHHHHHHHHhCCCcccEE--EEccCCCCHHHHHHHHHHHHHc--------C------CceeEEech
Q psy7639 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAV--ITVPAYFNDAQRQATKDAGAIA--------G------LNVMRIVNE 2114 (2568)
Q Consensus 2051 ~~~~peei~a~iL~~lk~~ae~~~g~~v~~aV--ItVPa~f~~~qR~a~~~Aa~~A--------G------l~vl~linE 2114 (2568)
..+++++..+|++..|++.++.+.+.+ .++| |+||++|++.||+|+++|+.-+ | ++.+++++|
T Consensus 93 ~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~E 171 (346)
T 2fsj_A 93 GRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQ 171 (346)
T ss_dssp TCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEET
T ss_pred CcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEcc
Confidence 346779999999999998875444545 4699 9999999999999999997665 4 345889999
Q ss_pred hhHHHhhcccccCc--CCcceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCC-
Q psy7639 2115 PTAAALAYGLDKNL--KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKK- 2191 (2568)
Q Consensus 2115 ptAaalaYg~~~~~--~~~~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~- 2191 (2568)
|+|||++| ++... ....+++|||+||||||++++++.+| . .|.++.++..+||++||+.|+ ++|+++|+.
T Consensus 172 p~AAa~~~-l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g-~-~v~~~s~~~~lGg~~i~~~I~----~~i~~~~g~~ 244 (346)
T 2fsj_A 172 GVGAALYL-LNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDM-E-PVVELSFSLQIGVGDAISALS----RKIAKETGFV 244 (346)
T ss_dssp THHHHHHH-HHHTSSCCCSSEEEEEEECSSCEEEEEEETTTT-E-ECGGGCEEESCCHHHHHHHHH----HHHHHHHCCC
T ss_pred HHHHHHHh-hccccccccCCcEEEEECCCCcEEEEEEEecCC-E-EEeecCCCcchhHHHHHHHHH----HHHHHHhCCC
Confidence 99999998 33211 13478999999999999999999888 5 788878999999999888665 456777876
Q ss_pred -CCCCCHHHHHHHHHHHHHHhhccCCcceeEEEEecccCCcceEEeeCHHHH-HHHhHHHHHHhhHHHHHHHHHcCCCcc
Q psy7639 2192 -DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARF-EELCSDLFRSTLQPVEKALQDAKLDKS 2269 (2568)
Q Consensus 2192 -d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i~~~~~~~d~~~~itr~~f-e~l~~~l~~~~~~~~~~~l~~a~~~~~ 2269 (2568)
++. .+ .+| . +..+.+ .|. .++++++ +++++++++++.++++++|+++ .+
T Consensus 245 ~~i~-----~~----~~e-------~--~~~~~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~ 295 (346)
T 2fsj_A 245 VPFD-----LA----QEA-------L--SHPVMF----RQK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VD 295 (346)
T ss_dssp CCHH-----HH----HHH-------T--TSCEEE----TTE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GG
T ss_pred cCCC-----HH----HHh-------c--CCeEeE----CCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hh
Confidence 332 11 122 0 112333 233 3559999 9999999999999999999887 67
Q ss_pred CcceEEEecCccChHHHHHHHHHhcCCCCC-CCCCCcchhHHhhHHHHHH
Q psy7639 2270 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSL-NLSINPDEAVAYGAAVQAA 2318 (2568)
Q Consensus 2270 ~i~~vilvGGstriP~v~~~l~~~f~~~~~-~~~~npdeava~GAa~~aa 2318 (2568)
+++.|+|+||++++ +++.|++.|+...+ ....||++|+|+|+...+.
T Consensus 296 ~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 296 RVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp GEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred cccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 89999999999999 99999999963222 1256999999999987653
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-23 Score=220.96 Aligned_cols=120 Identities=62% Similarity=0.941 Sum_probs=110.3
Q ss_pred cccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCC
Q psy7639 2327 AIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406 (2568)
Q Consensus 2327 ~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~ 2406 (2568)
-++++.+.||+|+||||++.+|.|.+|||||++||++++++|+|..|||+.+.|+|||||+.++.+|..||+|.|.|+||
T Consensus 13 ~~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp 92 (135)
T 1q5l_A 13 VPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINP 92 (135)
T ss_dssp --------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCS
T ss_pred EeCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecC
Q psy7639 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKND 2446 (2568)
Q Consensus 2407 ~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~ 2446 (2568)
+|+|.++|+|+|++|.||+|+|+|.|+.||++..++|.+.
T Consensus 93 ~p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~ 132 (135)
T 1q5l_A 93 APRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 132 (135)
T ss_dssp CCSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS
T ss_pred CCCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecC
Confidence 9999999999999999999999999999999999999876
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-23 Score=262.73 Aligned_cols=272 Identities=20% Similarity=0.215 Sum_probs=184.7
Q ss_pred HhhhhcCCcchHhhhHhhcCCCCCChhhhhhccCCCcEEEecCCCceEEEEEcCceeeeChhhhHHHHHHHHHHHHHHHh
Q psy7639 1995 KNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYL 2074 (2568)
Q Consensus 1995 ~~~~~~~p~~t~~~~KrliG~~~~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~lk~~ae~~~ 2074 (2568)
+...+.||++++..+||++++. ....+.. .+.-.|...+..... ...++++|+..++ +..|+.++
T Consensus 51 ~~g~i~d~~~~~~~ik~~~~~~------~~~~~~v---~~~i~~~~~~~~~~~--~~~v~~~el~~~i----~~ea~~~~ 115 (377)
T 2ych_A 51 MEGMVAEPAALAQEIKELLLEA------RTRKRYV---VTALSNLAVILRPIQ--VPKMPLKEMEEAV----RWEAERYI 115 (377)
T ss_dssp ETTEESCHHHHHHHHHHHHHHH------TCCCCEE---EEEECGGGCEEEEEE--EECCCHHHHHHHH----HHHHGGGC
T ss_pred cCCCcCCHHHHHHHHHHHHHHc------CCCcceE---EEEecCCcEEEEEEE--CCCCCHHHHHHHH----HHHHhhcC
Confidence 4556789999999999999851 0001111 111122111111111 1357888887653 45788999
Q ss_pred CCCcccEEEEccCCCCHHH--------------------HHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceE
Q psy7639 2075 GHSVRDAVITVPAYFNDAQ--------------------RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV 2134 (2568)
Q Consensus 2075 g~~v~~aVItVPa~f~~~q--------------------R~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~v 2134 (2568)
+.++.++||++| +.+.| .+++++|++.|||++.++++||+|||++|++......+..+
T Consensus 116 ~~~~~~~vid~~--~~~~~~~~~~~~~~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~ 193 (377)
T 2ych_A 116 PFPIDEVVLDFA--PLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVF 193 (377)
T ss_dssp SSCC-CEEEEEE--ESSCGGGSCTTSEEEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEE
T ss_pred CCChhHceEEEE--EeCCCCCCCCcceeEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeE
Confidence 999999999998 55555 28999999999999999999999999999864322235679
Q ss_pred EEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhcc
Q psy7639 2135 LIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTL 2214 (2568)
Q Consensus 2135 lv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~L 2214 (2568)
+|||+||||||++++. +| .+ . ..++..+||++||+.|++ .++.+ ..+||++|+.+
T Consensus 194 ~vvDiGggttdi~i~~--~g-~~--~-~~~~~~~GG~~i~~~i~~--------~~~~~-----------~~~aE~~K~~~ 248 (377)
T 2ych_A 194 LVLDIGAESTSLVLLR--GD-KP--L-AVRVLTLSGKDFTEAIAR--------SFNLD-----------LLAAEEVKRTY 248 (377)
T ss_dssp EEEEECSSCEEEEEEE--TT-EE--E-EEEEESCSHHHHHHHHHH--------HTTCC-----------HHHHHHHHHHT
T ss_pred EEEEECCCcEEEEEEE--CC-EE--E-EEEeeechHHHHHHHHHH--------HhCCC-----------HHHHHHHHhhc
Confidence 9999999999999987 45 22 1 347789999999998876 23433 46899999999
Q ss_pred CCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHH--cCCCccCcceEEEecCccChHHHHHHHHH
Q psy7639 2215 SSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGGSTRIPKVQSLLQN 2292 (2568)
Q Consensus 2215 S~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~--a~~~~~~i~~vilvGGstriP~v~~~l~~ 2292 (2568)
+.........+..++-.+....++|++|+++++++++++...++++|+. +++...+++.|+|+||+|++|.+++.|++
T Consensus 249 ~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~ 328 (377)
T 2ych_A 249 GMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTD 328 (377)
T ss_dssp C-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHH
T ss_pred ccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHH
Confidence 8654322211111111124568999999999999999999999999995 46777899999999999999999999999
Q ss_pred hcCCCCCCCCCCcchhHH
Q psy7639 2293 FFCGKSLNLSINPDEAVA 2310 (2568)
Q Consensus 2293 ~f~~~~~~~~~npdeava 2310 (2568)
.|+ .++.. .||+++|+
T Consensus 329 ~l~-~~v~~-~~P~~~v~ 344 (377)
T 2ych_A 329 TLG-VNLEP-VNPWEAVA 344 (377)
T ss_dssp HHT-SEEEE-CCGGGGSB
T ss_pred HhC-CCeEe-cCchhhcc
Confidence 994 44433 37766544
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-23 Score=261.85 Aligned_cols=230 Identities=17% Similarity=0.162 Sum_probs=170.5
Q ss_pred eecHHHHHHHHHHHHHHHHHHHhCCCCCeEE--EEecCCCCHHHHHHHHHHHHHc--------C------CcEEEEecch
Q psy7639 110 TFAPEEISSMVLTKMKETAEAYLGHSVRDAV--ITVPAYFNDAQRQATKDAGAIA--------G------LNVMRIVNEP 173 (2568)
Q Consensus 110 ~~speel~a~~L~~l~~~ae~~l~~~~~~~V--ITVPa~f~~~qr~al~~Aa~~A--------G------l~~~~li~Ep 173 (2568)
.++++...+|++..|+..++...+.+ .++| |+||++|++.||+++++|+..+ | ++.+++++||
T Consensus 94 ~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep 172 (346)
T 2fsj_A 94 RLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQG 172 (346)
T ss_dssp CTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETT
T ss_pred cccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccH
Confidence 45668888888888887653223333 5799 9999999999999999997776 4 3568899999
Q ss_pred hHHHHhhccccc-cC-CCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccC
Q psy7639 174 TAAALAYGLDKN-LK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 251 (2568)
Q Consensus 174 ~AAAl~y~~~~~-~~-~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~ 251 (2568)
+|||++| .+.. .. ....++|||+||||||++++++.++ . .+.+..++..+||.+|++.|.+++.++ |+...
T Consensus 173 ~AAa~~~-l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g-~-~v~~~s~~~~lGg~~i~~~I~~~i~~~----~g~~~ 245 (346)
T 2fsj_A 173 VGAALYL-LNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDM-E-PVVELSFSLQIGVGDAISALSRKIAKE----TGFVV 245 (346)
T ss_dssp HHHHHHH-HHHTSSCCCSSEEEEEEECSSCEEEEEEETTTT-E-ECGGGCEEESCCHHHHHHHHHHHHHHH----HCCCC
T ss_pred HHHHHHh-hccccccccCCcEEEEECCCCcEEEEEEEecCC-E-EEeecCCCcchhHHHHHHHHHHHHHHH----hCCCc
Confidence 9999998 3221 22 3467999999999999999998766 3 455556778999999999888776554 44310
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCcceEEeecHHHH-HHHHhhhhhhhHHHHHHHHHHcCCCCCCCC
Q psy7639 252 SVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARF-EELCSDLFRSTLQPVEKALQDAKLDKSAIH 330 (2568)
Q Consensus 252 ~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~l~~~~d~~~~itR~ef-e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~ 330 (2568)
... ...+| . ...+.+ .+. .++++++ +++++++++++.+.+++.|+++ .+.++
T Consensus 246 --~i~-----~~~~e-------~--~~~~~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~ 298 (346)
T 2fsj_A 246 --PFD-----LAQEA-------L--SHPVMF----RQK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVT 298 (346)
T ss_dssp --CHH-----HHHHH-------T--TSCEEE----TTE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEE
T ss_pred --CCC-----HHHHh-------c--CCeEeE----CCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhccc
Confidence 110 11122 1 112332 333 3569999 9999999999999999999876 45689
Q ss_pred eEEEcCCccchHHHHHHHHHHhCCCcc-cccCCchhHHHhhHHHHHH
Q psy7639 331 DVVLVGGSTRIPKVQSLLQNFFCGKSL-NLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 331 ~ViLvGG~sriP~v~~~l~~~f~~~~v-~~~~npdeaVA~GAa~~aa 376 (2568)
.|+|+||++++ +++.|++.|+...+ ....||++|+|+|+..++.
T Consensus 299 ~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 299 SLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp EEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred EEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 99999999999 99999999953222 1167999999999998764
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=258.52 Aligned_cols=306 Identities=19% Similarity=0.170 Sum_probs=208.1
Q ss_pred HHHhcccccEEEEEEcccccccccCCcccccccccchhhhhHHHHhhhcCCCccccccccccccccCChhhhhccccccc
Q psy7639 1379 KERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF 1458 (2568)
Q Consensus 1379 ~~~lGttns~~a~~~~~~~~~n~~g~~~tPS~v~~~~~~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k~~~~ 1458 (2568)
...|||++++++++.++...++..|...+||.... .....||..++..+|+++++.- . ..++..
T Consensus 17 giDiGt~~i~~~~~~~~~~~i~~~g~~~~ps~~~~---------~g~i~d~~~~~~~ik~~~~~~~--~----~~~~v~- 80 (377)
T 2ych_A 17 GLEIGASALKLVEVSGNPPALKALASRPTPPGLLM---------EGMVAEPAALAQEIKELLLEAR--T----RKRYVV- 80 (377)
T ss_dssp EEEECSSEEEEEEEETTTTEEEEEEEEECCTTSEE---------TTEESCHHHHHHHHHHHHHHHT--C----CCCEEE-
T ss_pred EEEeCCCeEEEEEEeCCceEEEEEEeEECCCCccc---------CCCcCCHHHHHHHHHHHHHHcC--C----CcceEE-
Confidence 34599999999999877666788999999997542 2345678888889999988621 0 111111
Q ss_pred EEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHH------------------
Q psy7639 1459 TVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ------------------ 1520 (2568)
Q Consensus 1459 ~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~q------------------ 1520 (2568)
+.-.++......+. .+.++++++... ++..++.+++.++.++||++| +.+.+
T Consensus 81 --~~i~~~~~~~~~~~--~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~--~~~~~~~~~~~~~~~v~~va~~~ 150 (377)
T 2ych_A 81 --TALSNLAVILRPIQ--VPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFA--PLTPLSEVQEGEQVQVMVAAARQ 150 (377)
T ss_dssp --EEECGGGCEEEEEE--EECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEE--ESSCGGGSCTTSEEEEEEEEEEH
T ss_pred --EEecCCcEEEEEEE--CCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEE--EeCCCCCCCCcceeEEEEEEecH
Confidence 11111111111121 146888887754 456888999999999999998 44443
Q ss_pred --HHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChh
Q psy7639 1521 --RQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598 (2568)
Q Consensus 1521 --R~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~ 1598 (2568)
.+.+++|++.|||++..+++||+|||++|+.......+..++|+|+||||+|+++++ +|.. . ..++..+||.
T Consensus 151 ~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~--~g~~---~-~~~~~~~GG~ 224 (377)
T 2ych_A 151 EAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR--GDKP---L-AVRVLTLSGK 224 (377)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEE--TTEE---E-EEEEESCSHH
T ss_pred HHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEE--CCEE---E-EEEeeechHH
Confidence 388999999999999999999999999997543333456799999999999999998 5632 2 2456679999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHH
Q psy7639 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFR 1678 (2568)
Q Consensus 1599 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~ 1678 (2568)
+||+.|++. ++.+ ...||++|+.++.............+.......+++++|+++++|+++
T Consensus 225 ~i~~~i~~~--------~~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~i~~~~~ 285 (377)
T 2ych_A 225 DFTEAIARS--------FNLD-----------LLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLV 285 (377)
T ss_dssp HHHHHHHHH--------TTCC-----------HHHHHHHHHHTC-------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHH--------hCCC-----------HHHHHHHHhhcccccccccccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999874 2222 458899999887533211100000011113347899999999999999
Q ss_pred HHHHHHHHHHHHc--CCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhh
Q psy7639 1679 STLQPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVA 1737 (2568)
Q Consensus 1679 ~i~~~i~~~L~~a--~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA 1737 (2568)
++...|++.|+.. +.....++.|+|+||+|++|.+++.+++.|+ .++... ||+++|+
T Consensus 286 ~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~-~~v~~~-~P~~~v~ 344 (377)
T 2ych_A 286 ELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG-VNLEPV-NPWEAVA 344 (377)
T ss_dssp HHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT-SEEEEC-CGGGGSB
T ss_pred HHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC-CCeEec-Cchhhcc
Confidence 9999999999863 5666789999999999999999999999994 444443 5555443
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-22 Score=241.49 Aligned_cols=203 Identities=22% Similarity=0.348 Sum_probs=177.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcceEE
Q psy7639 2056 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 2135 (2568)
Q Consensus 2056 eei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~~vl 2135 (2568)
.+....+|+++++.++.+.+.++..+|+|||++|+..||++++.+++.+|+++..++.||+|+|++|+.. ..+
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~-------~~~ 142 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN-------DGI 142 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-------SEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-------CEE
Confidence 4677899999999999999999999999999999999999999999999999999999999999999863 259
Q ss_pred EEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccC
Q psy7639 2136 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 2215 (2568)
Q Consensus 2136 v~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS 2215 (2568)
|+|+||||++++++. +| . ++ ..++..+||.+||+.|.+++. .+ ..+||++|+.++
T Consensus 143 viDiGggst~~~~~~--~g-~--~~-~~~~~~~Gg~~~~~~l~~~l~--------~~-----------~~~ae~~k~~~~ 197 (272)
T 3h1q_A 143 VVDIGGGTTGIAVIE--KG-K--IT-ATFDEPTGGTHLSLVLAGSYK--------IP-----------FEEAETIKKDFS 197 (272)
T ss_dssp EEEECSSCEEEEEEE--TT-E--EE-EECCBSCCHHHHHHHHHHHHT--------CC-----------HHHHHHHHHSST
T ss_pred EEEECCCcEEEEEEE--CC-E--EE-EEecCCCcHHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcC
Confidence 999999999999876 56 2 22 357889999999999888763 11 357899999886
Q ss_pred CcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcC
Q psy7639 2216 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 2295 (2568)
Q Consensus 2216 ~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~ 2295 (2568)
++++|++++.++++++.+.+.+.|+..+ +++.|+|+||++++|.+++.|++.|
T Consensus 198 ----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l- 250 (272)
T 3h1q_A 198 ----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL- 250 (272)
T ss_dssp ----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH-
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh-
Confidence 6899999999999999999999998764 5889999999999999999999999
Q ss_pred CCCCCCCCCcchhHHhhHHHHH
Q psy7639 2296 GKSLNLSINPDEAVAYGAAVQA 2317 (2568)
Q Consensus 2296 ~~~~~~~~npdeava~GAa~~a 2317 (2568)
+.++....||++++|+|||++|
T Consensus 251 ~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 251 GKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp SSCCBCCSSGGGHHHHHHHTTC
T ss_pred CCCccccCChHHHHHHHHHhcC
Confidence 5677778999999999999864
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=229.47 Aligned_cols=203 Identities=22% Similarity=0.352 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEE
Q psy7639 1483 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 1562 (2568)
Q Consensus 1483 ~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vl 1562 (2568)
.+....+|+++++.++.+.+.....+++|||++|...+|++++++++.+|+++..++.||+|++++|+.. ..+
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~-------~~~ 142 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN-------DGI 142 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-------SEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-------CEE
Confidence 4677899999999999999999999999999999999999999999999999999999999999998753 259
Q ss_pred EEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccC
Q psy7639 1563 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 1642 (2568)
Q Consensus 1563 V~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls 1642 (2568)
|+|+||||+|++++. +|. +.. .....+||.+||+.+++++. . + .+.+|++|+.++
T Consensus 143 viDiGggst~~~~~~--~g~---~~~-~~~~~~Gg~~~~~~l~~~l~--------~----~-------~~~ae~~k~~~~ 197 (272)
T 3h1q_A 143 VVDIGGGTTGIAVIE--KGK---ITA-TFDEPTGGTHLSLVLAGSYK--------I----P-------FEEAETIKKDFS 197 (272)
T ss_dssp EEEECSSCEEEEEEE--TTE---EEE-ECCBSCCHHHHHHHHHHHHT--------C----C-------HHHHHHHHHSST
T ss_pred EEEECCCcEEEEEEE--CCE---EEE-EecCCCcHHHHHHHHHHHhC--------C----C-------HHHHHHHHHhcC
Confidence 999999999999998 563 333 35567999999999988852 1 1 357888898875
Q ss_pred CCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhc
Q psy7639 1643 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 1722 (2568)
Q Consensus 1643 ~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~ 1722 (2568)
+++++++++.++++++...+.+.|+..+ +++.|+|+||++++|.+++++++.|
T Consensus 198 ----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l- 250 (272)
T 3h1q_A 198 ----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL- 250 (272)
T ss_dssp ----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH-
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh-
Confidence 6899999999999999999999998764 3678999999999999999999999
Q ss_pred CCcccccCCchhhhhccHHHHH
Q psy7639 1723 GKSLNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1723 ~~~v~~~~nP~eAVA~GAai~a 1744 (2568)
+.++..+.+|++++|+|||++|
T Consensus 251 ~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 251 GKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp SSCCBCCSSGGGHHHHHHHTTC
T ss_pred CCCccccCChHHHHHHHHHhcC
Confidence 5677788999999999999864
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=236.66 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=187.9
Q ss_pred eeChhhhHHHHHHHHHHHHHHHhCCCccc-EEEEccCC------------CC----------------------------
Q psy7639 2052 TFAPEEISSMVLTKMKETAEAYLGHSVRD-AVITVPAY------------FN---------------------------- 2090 (2568)
Q Consensus 2052 ~~~peei~a~iL~~lk~~ae~~~g~~v~~-aVItVPa~------------f~---------------------------- 2090 (2568)
....+.+ +..++++++.||..+|.++++ +++++|+. .+
T Consensus 50 I~di~~~-~~~I~~av~~ae~~~g~~i~~~v~v~i~g~~~~i~s~~~~~~i~~~~~~i~~~di~~~i~~a~~~~~p~d~~ 128 (419)
T 4a2a_A 50 IKDAIAF-KESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKT 128 (419)
T ss_dssp ESBHHHH-HHHHHHHHHHHHHHHTSCCCSEEEEEECCTTCEEEEEEEEEECCSSCEECCHHHHHHHHHHHHHHHSCTTEE
T ss_pred EEcHHHH-HHHHHHHHHHHHHHcCCCcCceEEEEEcCCcCeEEEEEeEEEEeCCCCEECHHHHHHHHHHhhhhcCCCCCE
Confidence 3445544 688889999999999999999 99999998 21
Q ss_pred -----------HH---------------------------HHHHHHHHHHHcCCceeEEechhhHHHhhcccccCcCCcc
Q psy7639 2091 -----------DA---------------------------QRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGER 2132 (2568)
Q Consensus 2091 -----------~~---------------------------qR~a~~~Aa~~AGl~vl~linEptAaalaYg~~~~~~~~~ 2132 (2568)
|. --+.+.+|++.|||+|.+|++||+|||++|..... .+.
T Consensus 129 ~l~~~p~~f~vDg~~~i~~P~Gm~g~~l~~~v~~v~~~~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~--~~~ 206 (419)
T 4a2a_A 129 PLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPE--KDR 206 (419)
T ss_dssp EEEEEEEEEEETTTEEESCCTTCEESEEEEEEEEEEEEHHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHH--HHH
T ss_pred EEEEEeeEEEECCccCcCCCCCCcccEEEEEEEEEEEeHHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcccc--ccC
Confidence 00 12468899999999999999999999999975432 356
Q ss_pred eEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q psy7639 2133 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR 2212 (2568)
Q Consensus 2133 ~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~ 2212 (2568)
.++|||+||||||+||+. +| .+.. .++..+||++||+.|..++ ++ ...+||++|+
T Consensus 207 gv~vvDiGggttdisi~~--~g-~~~~---~~~i~~GG~~it~dIa~~l--------~~-----------~~~~AE~iK~ 261 (419)
T 4a2a_A 207 GVVVVNLGYNFTGLIAYK--NG-VPIK---ISYVPVGMKHVIKDVSAVL--------DT-----------SFEESERLII 261 (419)
T ss_dssp CEEEEEECSSSEEEEEEE--TT-EEEE---EEEESCCHHHHHHHHHHHH--------TC-----------CHHHHHHHHH
T ss_pred CEEEEEECCCcEEEEEEE--CC-EEEE---EEecccHHHHHHHHHHHHH--------CC-----------CHHHHHHHHH
Confidence 799999999999999987 56 3332 4578999999999988653 22 2568999999
Q ss_pred ccCCc-----ceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCC------ccCcceEEEecCcc
Q psy7639 2213 TLSSS-----TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLD------KSAIHDVVLVGGST 2281 (2568)
Q Consensus 2213 ~LS~~-----~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~------~~~i~~vilvGGst 2281 (2568)
.++.. .+..+.++.+.+ +...+++|++|++++++.++++.+.++++|+.++++ ...++.|+|+||+|
T Consensus 262 ~~g~a~~~~~~~~~i~v~~~~~--~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s 339 (419)
T 4a2a_A 262 THGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGA 339 (419)
T ss_dssp HHCCSCCTTCCCCEEEEECTTS--CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGG
T ss_pred HhccCcccCCCCceEEEeecCC--ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchh
Confidence 98752 456788877643 467899999999999999999999999999999984 56799999999999
Q ss_pred ChHHHHHHHHHhcCCCCCCC-----------------CCCcchhHHhhHHHHHHHh
Q psy7639 2282 RIPKVQSLLQNFFCGKSLNL-----------------SINPDEAVAYGAAVQAAIL 2320 (2568)
Q Consensus 2282 riP~v~~~l~~~f~~~~~~~-----------------~~npdeava~GAa~~aa~l 2320 (2568)
+||.+++.+++.|+ .+... --+|.-+.|+|.+++++..
T Consensus 340 ~lpgl~e~~~~~~g-~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 340 KIPRINELATEVFK-SPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp GSTTHHHHHHHHHT-SCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC----
T ss_pred chhhHHHHHHHHHC-CCeEEEecCCCCchhccCcccccCCchHHHHHHHHHHHhhc
Confidence 99999999999995 33211 1378889999988877544
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=236.56 Aligned_cols=227 Identities=17% Similarity=0.138 Sum_probs=167.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHh-hccccccCCCceEEEEEeCCcceEEEEeeecCCc
Q psy7639 136 VRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALA-YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA 213 (2568)
Q Consensus 136 ~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~-y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 213 (2568)
...+|||+|++|+..+|++|.+++ +.+|++.+.+++||+|||++ |........+.+.||+|+||||||++++. .|.
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~--~G~ 184 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA--EGY 184 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEE--TTE
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeE--CCE
Confidence 357999999999999999999999 88999999999999999987 52211111123679999999999999985 452
Q ss_pred EEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCCC-----------------
Q psy7639 214 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----------------- 276 (2568)
Q Consensus 214 ~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------- 276 (2568)
.+....++..+||++||+.|.++|.+++. ...... -...+|++|+.++...
T Consensus 185 --~~~~~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~ 252 (418)
T 1k8k_A 185 --VIGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNKYDTDGSKW 252 (418)
T ss_dssp --ECGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGT
T ss_pred --EcccceEEEeCcHHHHHHHHHHHHHhcCC---CCCCHH-------HHHHHHHHHHhhchhcccHHHHHHhhccccccc
Confidence 23333466789999999999998865431 111111 1245677887775421
Q ss_pred ceEEEEeeeccCcceEEeecHHHH---HHHHhhhh------hhhHHHHHHHHHHcCC--CCCCCCeEEEcCCccchHHHH
Q psy7639 277 EASIEIDALYDGIDFYTKISRARF---EELCSDLF------RSTLQPVEKALQDAKL--DKSAIHDVVLVGGSTRIPKVQ 345 (2568)
Q Consensus 277 ~~~i~i~~l~~~~d~~~~itR~ef---e~l~~~l~------~~i~~~i~~~l~~a~~--~~~~i~~ViLvGG~sriP~v~ 345 (2568)
...+.++....+.+..+.+++++| |.+|.|.+ ..+.+.|.++|..+.. ....++.|+|+||+|++|.++
T Consensus 253 ~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~ 332 (418)
T 1k8k_A 253 IKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFG 332 (418)
T ss_dssp CEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHH
T ss_pred ceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHH
Confidence 134555544445566889999999 67776653 5789999999998763 344578999999999999999
Q ss_pred HHHHHHhCCC-----------------------cccccCCchhHHHhhHHHHHH
Q psy7639 346 SLLQNFFCGK-----------------------SLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 346 ~~l~~~f~~~-----------------------~v~~~~npdeaVA~GAa~~aa 376 (2568)
++|++.++.. .+..+.+|..++..||+++|.
T Consensus 333 ~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 333 RRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 9998766321 123345778999999999886
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=231.06 Aligned_cols=221 Identities=20% Similarity=0.245 Sum_probs=157.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEE
Q psy7639 137 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 215 (2568)
Q Consensus 137 ~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~ 215 (2568)
..+|||+|++++..+|+++.+++ +.+|++.+.+++||+|||++++. .+.||+|+||||||++.+. +| +
T Consensus 101 ~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-------~~~lVvDiG~gtt~v~~v~--~G--~ 169 (375)
T 2fxu_A 101 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVTHNVPIY--EG--Y 169 (375)
T ss_dssp SCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-------SSEEEEEECSSCEEEEEEE--TT--E
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC-------CeEEEEEcCCCceEEeEeE--CC--E
Confidence 45999999999999999998765 88899999999999999999975 3689999999999998774 45 2
Q ss_pred EEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHH---------HHHHHhcCCCCceEEEEeeec
Q psy7639 216 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAA---------ERAKRTLSSSTEASIEIDALY 286 (2568)
Q Consensus 216 ~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~a---------E~aK~~LS~~~~~~i~i~~l~ 286 (2568)
.+....+...+||++||+.|.++|..+. +......+.....+|...+ +..|..++......+.+ .
T Consensus 170 ~~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~l---p 243 (375)
T 2fxu_A 170 ALPHAIMRLDLAGRDLTDYLMKILTERG---YSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL---P 243 (375)
T ss_dssp ECGGGCEEESCCHHHHHHHHHHHHHHHT---CCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEEC---T
T ss_pred EeccceEEeccCHHHHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEEC---C
Confidence 3333345678999999999999987651 1111001112222232221 22222333333334443 2
Q ss_pred cCcceEEeecHHHH---HHHHhhh-----hhhhHHHHHHHHHHcCC--CCCCCCeEEEcCCccchHHHHHHHHHHhCC--
Q psy7639 287 DGIDFYTKISRARF---EELCSDL-----FRSTLQPVEKALQDAKL--DKSAIHDVVLVGGSTRIPKVQSLLQNFFCG-- 354 (2568)
Q Consensus 287 ~~~d~~~~itR~ef---e~l~~~l-----~~~i~~~i~~~l~~a~~--~~~~i~~ViLvGG~sriP~v~~~l~~~f~~-- 354 (2568)
++. .+.|++++| |.++.|. ...+.+.|.++|..+.. ....++.|+|+||+|++|.++++|++.++.
T Consensus 244 dg~--~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~ 321 (375)
T 2fxu_A 244 DGQ--VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA 321 (375)
T ss_dssp TSC--EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred CCC--EEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhC
Confidence 333 467888888 5556664 36788899999987642 233468899999999999999999998841
Q ss_pred -----CcccccCCchhHHHhhHHHHHH
Q psy7639 355 -----KSLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 355 -----~~v~~~~npdeaVA~GAa~~aa 376 (2568)
.++..+.||+.+|+.||+++|.
T Consensus 322 p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 322 PSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp CTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred CCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 2344567999999999999997
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=230.24 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccce-EEEEecCC------------CCH-------------------------------
Q psy7639 1483 EEISSMVLTKMKETAEAYLGHSVRD-AVITVPAY------------FND------------------------------- 1518 (2568)
Q Consensus 1483 ~ev~a~iL~~lk~~ae~~l~~~~~~-~ViTVPa~------------f~~------------------------------- 1518 (2568)
.+-.+..++.+++.+|...|.++.+ ++++||.. ++.
T Consensus 53 i~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g~~~~i~s~~~~~~i~~~~~~i~~~di~~~i~~a~~~~~p~d~~~l~~ 132 (419)
T 4a2a_A 53 AIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHI 132 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECCTTCEEEEEEEEEECCSSCEECCHHHHHHHHHHHHHHHSCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcCCcCeEEEEEeEEEEeCCCCEECHHHHHHHHHHhhhhcCCCCCEEEEE
Confidence 3444789999999999999999999 99999988 210
Q ss_pred -----------------------------------HHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEE
Q psy7639 1519 -----------------------------------AQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLI 1563 (2568)
Q Consensus 1519 -----------------------------------~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV 1563 (2568)
..-+.+.+|++.|||++..+++||+|||++|..+. ..+..++|
T Consensus 133 ~p~~f~vDg~~~i~~P~Gm~g~~l~~~v~~v~~~~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~--~~~~gv~v 210 (419)
T 4a2a_A 133 FSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTP--EKDRGVVV 210 (419)
T ss_dssp EEEEEEETTTEEESCCTTCEESEEEEEEEEEEEEHHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHH--HHHHCEEE
T ss_pred EeeEEEECCccCcCCCCCCcccEEEEEEEEEEEeHHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccc--cccCCEEE
Confidence 12356899999999999999999999999986543 23557999
Q ss_pred EEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCC
Q psy7639 1564 FDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 1643 (2568)
Q Consensus 1564 ~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~ 1643 (2568)
||+||||||++++. +|.. .. .++..+||.+||+.|+..+. . ....||++|+.++.
T Consensus 211 vDiGggttdisi~~--~g~~---~~-~~~i~~GG~~it~dIa~~l~--------~-----------~~~~AE~iK~~~g~ 265 (419)
T 4a2a_A 211 VNLGYNFTGLIAYK--NGVP---IK-ISYVPVGMKHVIKDVSAVLD--------T-----------SFEESERLIITHGN 265 (419)
T ss_dssp EEECSSSEEEEEEE--TTEE---EE-EEEESCCHHHHHHHHHHHHT--------C-----------CHHHHHHHHHHHCC
T ss_pred EEECCCcEEEEEEE--CCEE---EE-EEecccHHHHHHHHHHHHHC--------C-----------CHHHHHHHHHHhcc
Confidence 99999999999998 6732 22 34567999999999987632 1 24689999988864
Q ss_pred C-----CeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCC------CCccccEEEEecCccCChh
Q psy7639 1644 S-----TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKL------DKSAIHDVVLVGGSTRIPK 1712 (2568)
Q Consensus 1644 ~-----~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~------~~~~Id~ViLVGGssr~P~ 1712 (2568)
. .+..+.++... ......++|++|.++++|+++++++.+++.|++++. ....++.|+|+||+|++|.
T Consensus 266 a~~~~~~~~~i~v~~~~--~~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpg 343 (419)
T 4a2a_A 266 AVYNDLKEEEIQYRGLD--GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPR 343 (419)
T ss_dssp SCCTTCCCCEEEEECTT--SCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTT
T ss_pred CcccCCCCceEEEeecC--CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhh
Confidence 2 34567776543 235568999999999999999999999999999987 3556899999999999999
Q ss_pred HHHHHHhhhcCCccccc-----------------CCchhhhhccHHHHHHH
Q psy7639 1713 VQSLLQNFFCGKSLNLS-----------------INPDEAVAYGAAVQAAI 1746 (2568)
Q Consensus 1713 V~~~I~~~f~~~~v~~~-----------------~nP~eAVA~GAai~a~~ 1746 (2568)
+++++++.|+ .+++.. .+|..++|+|.++++..
T Consensus 344 l~e~~~~~~g-~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 344 INELATEVFK-SPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp HHHHHHHHHT-SCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC---
T ss_pred HHHHHHHHHC-CCeEEEecCCCCchhccCcccccCCchHHHHHHHHHHHhh
Confidence 9999999995 333322 37899999999988744
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=229.76 Aligned_cols=218 Identities=20% Similarity=0.260 Sum_probs=163.4
Q ss_pred ccEEEEccCCCCHHHHHHHHHHH-HHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeEEEEEEEcCCcEE
Q psy7639 2079 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 2157 (2568)
Q Consensus 2079 ~~aVItVPa~f~~~qR~a~~~Aa-~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~~~~g~~~ 2157 (2568)
..+|||+|++|+..||+++.+++ +.+|++.+.+++||+|||++||. .+.+|+|+|||||||+.+ .+| +
T Consensus 101 ~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-------~~~lVvDiG~gtt~v~~v--~~G--~ 169 (375)
T 2fxu_A 101 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVTHNVPI--YEG--Y 169 (375)
T ss_dssp SCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-------SSEEEEEECSSCEEEEEE--ETT--E
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC-------CeEEEEEcCCCceEEeEe--ECC--E
Confidence 45999999999999999888764 89999999999999999999995 358999999999998665 467 3
Q ss_pred EEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHH---------HHHhhccCCcceeEEEEec
Q psy7639 2158 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMS--VNPRALRRLRTAA---------ERAKRTLSSSTEASIEIDA 2226 (2568)
Q Consensus 2158 ~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~--~~~~~~~~L~~~~---------e~~K~~LS~~~~~~~~i~~ 2226 (2568)
.+..+.++..+||++||+.|.++|..+ +.++. .+.....+|+..+ |..|..++......+.++
T Consensus 170 ~~~~~~~~~~~GG~~lt~~l~~~l~~~-----~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp- 243 (375)
T 2fxu_A 170 ALPHAIMRLDLAGRDLTDYLMKILTER-----GYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP- 243 (375)
T ss_dssp ECGGGCEEESCCHHHHHHHHHHHHHHH-----TCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT-
T ss_pred EeccceEEeccCHHHHHHHHHHHHHhc-----CCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC-
Confidence 444445788999999999999988764 22332 1334555555543 333444555555566654
Q ss_pred ccCCcceEEeeCHHHHHHHhHHHH---------HHhhHHHHHHHHHcC--CCccCcceEEEecCccChHHHHHHHHHhcC
Q psy7639 2227 LYDGIDFYTKISRARFEELCSDLF---------RSTLQPVEKALQDAK--LDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 2295 (2568)
Q Consensus 2227 ~~~~~d~~~~itr~~fe~l~~~l~---------~~~~~~~~~~l~~a~--~~~~~i~~vilvGGstriP~v~~~l~~~f~ 2295 (2568)
+|. .++|++++|+ +.+.|| ..+.+.+.++|..+. +.+..++.|+|+||+|++|.+++.|++.++
T Consensus 244 --dg~--~i~i~~erf~-~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~ 318 (375)
T 2fxu_A 244 --DGQ--VITIGNERFR-CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEIT 318 (375)
T ss_dssp --TSC--EEEESTHHHH-HHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHH
T ss_pred --CCC--EEEEChhhee-chHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHH
Confidence 333 4678999885 444454 347788888888653 445677999999999999999999988874
Q ss_pred C-------CCCCCCCCcchhHHhhHHHHHH
Q psy7639 2296 G-------KSLNLSINPDEAVAYGAAVQAA 2318 (2568)
Q Consensus 2296 ~-------~~~~~~~npdeava~GAa~~aa 2318 (2568)
. ..+....||+.+|++||+++|.
T Consensus 319 ~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp HHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred HhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 2 1222456899999999999997
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-19 Score=233.35 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=166.9
Q ss_pred cccEEEEccCCCCHHHHHHHHHHH-HHcCCceeEEechhhHHHhh-c---ccccCcCCcceEEEEeeCCeeeEEEEEEEc
Q psy7639 2078 VRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALA-Y---GLDKNLKGERNVLIFDLGGGTFDVSILSID 2152 (2568)
Q Consensus 2078 v~~aVItVPa~f~~~qR~a~~~Aa-~~AGl~vl~linEptAaala-Y---g~~~~~~~~~~vlv~DlGggt~dvsil~~~ 2152 (2568)
...+|||+|++|++.||+++.+++ +.+|++.+.+++||+|||++ | ++... .. +.+|+|+|||||||+++.
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~--~~-~glVvDiG~gtt~v~~v~-- 181 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER--TL-TGTVIDSGDGVTHVIPVA-- 181 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC--CC-CEEEEEESSSCEEEEEEE--
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC--CC-eEEEEEcCCCceEEEEeE--
Confidence 457999999999999999999999 99999999999999999998 6 33221 23 789999999999999985
Q ss_pred CCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcc--------------
Q psy7639 2153 EGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST-------------- 2218 (2568)
Q Consensus 2153 ~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~-------------- 2218 (2568)
+| +.+..+.++..+||++||+.|.++|.+++ +..+...+. ..||++|+.++...
T Consensus 182 ~G--~~~~~~~~~~~lGG~~lt~~l~~~l~~~~---~~~~~~~~~-------~~~e~iK~~~~~v~~~~~~e~~~~~~~~ 249 (418)
T 1k8k_A 182 EG--YVIGSCIKHIPIAGRDITYFIQQLLRDRE---VGIPPEQSL-------ETAKAVKERYSYVCPDLVKEFNKYDTDG 249 (418)
T ss_dssp TT--EECGGGCEEESCSHHHHHHHHHHHHHTTC---CCCCGGGHH-------HHHHHHHHHHCCCCSCHHHHHHHHHHSG
T ss_pred CC--EEcccceEEEeCcHHHHHHHHHHHHHhcC---CCCCCHHHH-------HHHHHHHHhhchhcccHHHHHHhhcccc
Confidence 57 24555558889999999999999887542 111111122 34566666654321
Q ss_pred ---eeEEEEecccCCcceEEeeCHHHH---HHHhHHH------HHHhhHHHHHHHHHcC--CCccCcceEEEecCccChH
Q psy7639 2219 ---EASIEIDALYDGIDFYTKISRARF---EELCSDL------FRSTLQPVEKALQDAK--LDKSAIHDVVLVGGSTRIP 2284 (2568)
Q Consensus 2219 ---~~~~~i~~~~~~~d~~~~itr~~f---e~l~~~l------~~~~~~~~~~~l~~a~--~~~~~i~~vilvGGstriP 2284 (2568)
...+.++....+....+++++++| |.|..|. +..+.+.|.++|..+. +.+..++.|+|+||+|++|
T Consensus 250 ~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~p 329 (418)
T 1k8k_A 250 SKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFR 329 (418)
T ss_dssp GGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCST
T ss_pred cccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccc
Confidence 246777776667778899999999 4443332 2467888999998764 5567889999999999999
Q ss_pred HHHHHHHHhcCCC-----------------C----C--CCCCCcchhHHhhHHHHHH
Q psy7639 2285 KVQSLLQNFFCGK-----------------S----L--NLSINPDEAVAYGAAVQAA 2318 (2568)
Q Consensus 2285 ~v~~~l~~~f~~~-----------------~----~--~~~~npdeava~GAa~~aa 2318 (2568)
.+++.|++.|+.. + + ...-+|..++.+||++.|.
T Consensus 330 g~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 330 DFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 9999988766321 0 1 1122566899999999886
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-18 Score=210.60 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=151.1
Q ss_pred eeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CCHH--HH--HHHHH--------H----HHHcCCcEEEEec
Q psy7639 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAY-FNDA--QR--QATKD--------A----GAIAGLNVMRIVN 171 (2568)
Q Consensus 109 ~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~-f~~~--qr--~al~~--------A----a~~AGl~~~~li~ 171 (2568)
..++++.+++.+ ..|+. +.. .+.+ .++|+++|.. |... || +++.+ + ++.++++.+.+++
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 468888888764 55543 211 1222 4699999987 6541 21 11211 1 2345667899999
Q ss_pred chhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccC
Q psy7639 172 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 251 (2568)
Q Consensus 172 Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~ 251 (2568)
||.|||++|... ...+..++|+|+||||||+++++ .+ ...+.+..++..+||.+||+.|.+++.++ +.++
T Consensus 148 e~~aa~~~~~~~--~~~~~~~~vvDiGggttd~~v~~--~g-~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i 217 (320)
T 2zgy_A 148 ESIPAGYEVLQE--LDELDSLLIIDLGGTTLDISQVM--GK-LSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKG 217 (320)
T ss_dssp SSHHHHHHHHHH--SCTTCEEEEEEECSSCEEEEEEE--GG-GCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGG
T ss_pred CcHHHHHhhhcc--ccCCCCEEEEEcCCCeEEEEEEe--CC-eeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCC
Confidence 999999988632 34567899999999999999997 33 33456667778999999999999887542 2222
Q ss_pred CCCHHHHHHHHHHHHHH-HHhcCCCCceEEEEeeeccCcceEEeecHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCC
Q psy7639 252 SVNPRALRRLRTAAERA-KRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIH 330 (2568)
Q Consensus 252 ~~~~~~~~~L~~~aE~a-K~~LS~~~~~~i~i~~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~ 330 (2568)
+. ..+|++ |.. . .. .+....+...-+++++.+++++.++++.+.|.+.+++. .+++
T Consensus 218 --~~-------~~ae~~lk~~-~--~~-------~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~ 274 (320)
T 2zgy_A 218 --SS-------YLADDIIIHR-K--DN-------NYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYT 274 (320)
T ss_dssp --GH-------HHHHHHHHTT-T--CH-------HHHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCC
T ss_pred --CH-------HHHHHHHHHh-h--hh-------hcccceecCchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCC
Confidence 11 123444 322 0 00 00000000111345666677777777777776666552 4689
Q ss_pred eEEEcCCccchHHHHHHHHHHhCCC--cccccCCchhHHHhhHHHHH
Q psy7639 331 DVVLVGGSTRIPKVQSLLQNFFCGK--SLNLSINPDEAVAYGAAVQA 375 (2568)
Q Consensus 331 ~ViLvGG~sriP~v~~~l~~~f~~~--~v~~~~npdeaVA~GAa~~a 375 (2568)
.|+|+||+|++ +++.|++.|+.. ++....||++|+|+||+++|
T Consensus 275 ~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 275 HVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp EEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred eEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 99999999998 999999999543 56778899999999999875
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-18 Score=210.70 Aligned_cols=228 Identities=17% Similarity=0.201 Sum_probs=154.7
Q ss_pred eeeChhhhHHHHHHHHHHHHHHHhCCCcccEEEEccCC-CCHH--HH--HHHHH--------H----HHHcCCceeEEec
Q psy7639 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAY-FNDA--QR--QATKD--------A----GAIAGLNVMRIVN 2113 (2568)
Q Consensus 2051 ~~~~peei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~-f~~~--qR--~a~~~--------A----a~~AGl~vl~lin 2113 (2568)
..++++.+++.. ..|++ +.. .+.++ ++|+++|.. |.+. || +++++ + ++.++++..+++.
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~~-~~~~~-~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SGL-PVSEV-DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HSC-CSCEE-EEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cCC-CCceE-EEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 468888887753 55553 221 23345 699999987 7642 32 21211 1 4566778899999
Q ss_pred hhhHHHhhcccccCcCCcceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCC
Q psy7639 2114 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 2193 (2568)
Q Consensus 2114 EptAaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~ 2193 (2568)
||+|||++|+... ..+..++|+|+||||+|+++++ +| .+.|.++.++.++||++||+.|++++.+ + +.++
T Consensus 148 e~~aa~~~~~~~~--~~~~~~~vvDiGggttd~~v~~--~g-~~~v~~~~~~~~lGg~~~~~~I~~~l~~----~-~~~i 217 (320)
T 2zgy_A 148 ESIPAGYEVLQEL--DELDSLLIIDLGGTTLDISQVM--GK-LSGISKIYGDSSLGVSLVTSAVKDALSL----A-RTKG 217 (320)
T ss_dssp SSHHHHHHHHHHS--CTTCEEEEEEECSSCEEEEEEE--GG-GCCEEEEEEECSCCTHHHHHHHHHHTTC----C-SBGG
T ss_pred CcHHHHHhhhccc--cCCCCEEEEEcCCCeEEEEEEe--CC-eeEEeeecCCccccHHHHHHHHHHHHHH----c-CCCC
Confidence 9999999997422 2457899999999999999998 56 5678888999999999999999888864 2 3333
Q ss_pred CCCHHHHHHHHHHHHHH-hhccCCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcc
Q psy7639 2194 SVNPRALRRLRTAAERA-KRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIH 2272 (2568)
Q Consensus 2194 ~~~~~~~~~L~~~~e~~-K~~LS~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~ 2272 (2568)
. . ..||++ |.. .. . .+....+..+-+++.+.+++++.++.+.+.+.+.+++ ..+++
T Consensus 218 ~--~-------~~ae~~lk~~-~~--------~-~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~i~~~i~~----~~~~~ 274 (320)
T 2zgy_A 218 S--S-------YLADDIIIHR-KD--------N-NYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNE----FSGYT 274 (320)
T ss_dssp G--H-------HHHHHHHHTT-TC--------H-HHHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCC
T ss_pred C--H-------HHHHHHHHHh-hh--------h-hcccceecCchhhHHHHHHHHHHHHHHHHHHHHHHHh----hcCCC
Confidence 2 1 123444 322 00 0 0000000011234555666666666666666666654 26899
Q ss_pred eEEEecCccChHHHHHHHHHhcCCC--CCCCCCCcchhHHhhHHHHH
Q psy7639 2273 DVVLVGGSTRIPKVQSLLQNFFCGK--SLNLSINPDEAVAYGAAVQA 2317 (2568)
Q Consensus 2273 ~vilvGGstriP~v~~~l~~~f~~~--~~~~~~npdeava~GAa~~a 2317 (2568)
.|+|+||++++ +++.|++.|+.. ++....||++|+|+||++++
T Consensus 275 ~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 275 HVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp EEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred eEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 99999999998 999999999643 46667899999999999865
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-17 Score=203.05 Aligned_cols=238 Identities=15% Similarity=0.143 Sum_probs=158.7
Q ss_pred EEecCCCceEEEEEcCceeeeChhhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHHHHHHHHHHHHcCCceeEEe
Q psy7639 2033 VVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 2112 (2568)
Q Consensus 2033 ~~~~~~~~~~~v~~~~~~~~~~peei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~qR~a~~~Aa~~AGl~vl~li 2112 (2568)
++++++++...... ....|.|+++++|+++++.|.. ++++.++.++..+..+|+..+++.|
T Consensus 17 v~d~~~~il~~~~~----~~g~~~e~a~~vl~~~~~~a~~---------------~~~~~~~~a~t~~~~~a~~~~~~~V 77 (276)
T 4ehu_A 17 ILKNGEDIVASETI----SSGTGTTGPSRVLEKLYGKTGL---------------AREDIKKVVVTGYGRMNYSDADKQI 77 (276)
T ss_dssp EEETTTEEEEEEEE----SCCTTSSHHHHHHHHHHHHHCC---------------CGGGEEEEEEESTTGGGCCSCSEEC
T ss_pred EEECCCeEEEEEEe----cCCCCHHHHHHHHHHHHHHCCC---------------cchhccccccCchHHHHhhCCCccc
Confidence 34555544333321 3477899999999999887632 2222222233334457899999999
Q ss_pred chhhHHHhhcccccCcCCcceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCC
Q psy7639 2113 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKD 2192 (2568)
Q Consensus 2113 nEptAaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d 2192 (2568)
|||+|+|+++.+... ....|+|+|||+++++++. .+| .+++..++++..+||.+|+..+..+|--.|.....
T Consensus 78 ne~~aha~a~~~~~~----~~~~vl~lgG~~~~~~~~~-~~g-~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~~-- 149 (276)
T 4ehu_A 78 SELSCHARGVNFIIP----ETRTIIDIGGQDAKVLKLD-NNG-RLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGS-- 149 (276)
T ss_dssp CHHHHHHHHHHHHST----TCCEEEEECSSCEEEEEEC-TTS-CEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHHH--
T ss_pred chHHHHHHHHHHhCC----CCCeEEEEcCCCceEEEEE-ecC-ceEEEEeCCCcCcchhhHHHHHHHHhccChhhhHH--
Confidence 999999999876543 3357899999999999985 567 78999999999999999999998887544332110
Q ss_pred CCCCHHHHHHHHHHHHHHhh--ccCCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccC
Q psy7639 2193 MSVNPRALRRLRTAAERAKR--TLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 2270 (2568)
Q Consensus 2193 ~~~~~~~~~~L~~~~e~~K~--~LS~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~ 2270 (2568)
+ +.+++. .+|+...+ +....-....-.....++++..+.+.+.+.+...... ..+
T Consensus 150 ----------~---~~~a~~~~~i~~~~~~------f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l~~~~~~----~~~ 206 (276)
T 4ehu_A 150 ----------I---SMNSQNEVSISSTCTV------FAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKR----IGV 206 (276)
T ss_dssp ----------H---HTTCSSCCCCCCCSHH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH----HCC
T ss_pred ----------H---HhcCCCCCCcCCccch------hhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHh----ccc
Confidence 0 111111 11110000 0000000000111224566666666666555544433 467
Q ss_pred cceEEEecCccChHHHHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHHhh
Q psy7639 2271 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321 (2568)
Q Consensus 2271 i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~ls 2321 (2568)
++.|+|+||++|+|.|++.++++| ++++....||++++|+|||++|....
T Consensus 207 ~~~vvl~GGva~n~~lr~~l~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 207 QRNVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHH-TSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred CCeEEEecCccchHHHHHHHHHHH-CCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 899999999999999999999999 67888889999999999999997654
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-14 Score=147.13 Aligned_cols=98 Identities=41% Similarity=0.807 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhh--ccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHH
Q psy7639 2471 RQKERISARNNLEAYVFNVKQALDN--AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKM 2548 (2568)
Q Consensus 2471 ~~re~~eakN~lE~~iy~~r~~L~~--~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi~~r~ 2548 (2568)
++|+++++||+||+|||++|+.|.+ +.+++++++|++|+++|+++.+||++++.++.++|++++++|+++|.||+.|+
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987 66899999999999999999999998877899999999999999999999999
Q ss_pred hcCCC-C--CCCC--------CCCCCcCCCC
Q psy7639 2549 HGGAS-A--GDMP--------RGGPTVEEVD 2568 (2568)
Q Consensus 2549 ~e~~g-~--~~~~--------g~g~~~~e~d 2568 (2568)
|+++| + +++| +.|||+||||
T Consensus 83 y~~~~~~~~~~~~~~~~~~~~~~gp~~eevd 113 (113)
T 3lof_A 83 YQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113 (113)
T ss_dssp HHC----------------------------
T ss_pred HHhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 97532 1 1111 2589999998
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-14 Score=185.21 Aligned_cols=215 Identities=21% Similarity=0.232 Sum_probs=92.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEE
Q psy7639 137 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 215 (2568)
Q Consensus 137 ~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~ 215 (2568)
..++||+|++++..+|+++.+++ +.+|++.+.+++||.|||++++. .+.+|+|+|+|||+++.+. +|.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-------~~~lVVDiG~g~T~v~pv~--~G~-- 173 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-------LTGVVVDSGDGVTHICPVY--EGF-- 173 (394)
T ss_dssp --------------------------------------------------------CCEEEECSSCEEEECEE--TTE--
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-------ceEEEEEcCCCceEeeeeE--CCE--
Confidence 35999999999999999999865 77899999999999999998875 2579999999999998774 352
Q ss_pred EEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCC----------------CceE
Q psy7639 216 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS----------------TEAS 279 (2568)
Q Consensus 216 ~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~----------------~~~~ 279 (2568)
-+........+||+++|+.|.++|..+ .+......+.. .+|+.|+.+..- ....
T Consensus 174 ~~~~~~~~~~~GG~~lt~~l~~~l~~~---~~~~~~~~~~~-------~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~ 243 (394)
T 1k8k_B 174 SLPHLTRRLDIAGRDITRYLIKLLLLR---GYAFNHSADFE-------TVRMIKEKLCYVGYNIEQEQKLALETTVLVES 243 (394)
T ss_dssp ECSTTCEEESCCHHHHHHHHHHHHHHT---TCCCCTTTTHH-------HHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEE
T ss_pred EcccceEEeeccHHHHHHHHHHHHHhc---CCCCCcHHHHH-------HHHHHHHhheeEecCHHHHHHhhccCCcCceE
Confidence 122222346799999999999988654 12211112222 344455444321 1122
Q ss_pred EEEeeeccCcceEEeecHHHH---HHHHhhh-----hhhhHHHHHHHHHHcCCC--CCCCCeEEEcCCccchHHHHHHHH
Q psy7639 280 IEIDALYDGIDFYTKISRARF---EELCSDL-----FRSTLQPVEKALQDAKLD--KSAIHDVVLVGGSTRIPKVQSLLQ 349 (2568)
Q Consensus 280 i~i~~l~~~~d~~~~itR~ef---e~l~~~l-----~~~i~~~i~~~l~~a~~~--~~~i~~ViLvGG~sriP~v~~~l~ 349 (2568)
+. +.++. .+.|++++| |.++.|. ...+.+.|.+.|..+... ..-.+.|+|+||+|.+|.+.++|+
T Consensus 244 ~~---lpdg~--~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~ 318 (394)
T 1k8k_B 244 YT---LPDGR--IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLE 318 (394)
T ss_dssp EE---CTTSC--EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHH
T ss_pred EE---CCCCC--EEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHH
Confidence 22 23333 467788887 3444442 356788899999988543 223678999999999999999999
Q ss_pred HHhCC--------------C--cc--cccCCchhHHHhhHHHHHHH
Q psy7639 350 NFFCG--------------K--SL--NLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 350 ~~f~~--------------~--~v--~~~~npdeaVA~GAa~~aa~ 377 (2568)
+.+.. . ++ ..+.+|..++..|++++|..
T Consensus 319 ~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 319 RELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp HHHHHHHHHHTCSSCCCTTCCCCC----------------------
T ss_pred HHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 87732 0 22 22557789999999998873
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=176.64 Aligned_cols=220 Identities=20% Similarity=0.232 Sum_probs=93.9
Q ss_pred ccEEEEccCCCCHHHHHHHHHHH-HHcCCceeEEechhhHHHhhcccccCcCCcceEEEEeeCCeeeEEEEEEEcCCcEE
Q psy7639 2079 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 2157 (2568)
Q Consensus 2079 ~~aVItVPa~f~~~qR~a~~~Aa-~~AGl~vl~linEptAaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~~~~g~~~ 2157 (2568)
..+|||+|++++..+|+++.+.+ +.+|+..+.+++||+|||++||. .+.+|+|+|+|+++|+.+. +| .
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-------~~~lVVDiG~g~T~v~pv~--~G-~- 173 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-------LTGVVVDSGDGVTHICPVY--EG-F- 173 (394)
T ss_dssp --------------------------------------------------------CCEEEECSSCEEEECEE--TT-E-
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-------ceEEEEEcCCCceEeeeeE--CC-E-
Confidence 35999999999999999999865 88899999999999999999985 3569999999999997664 57 2
Q ss_pred EEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh----cc-----CCcceeEEEEeccc
Q psy7639 2158 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR----TL-----SSSTEASIEIDALY 2228 (2568)
Q Consensus 2158 ~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~----~L-----S~~~~~~~~i~~~~ 2228 (2568)
-+..+.....+||+++|+.|.++|..+ .+......+.....+|++.+..+.. .+ +......+.++
T Consensus 174 ~~~~~~~~~~~GG~~lt~~l~~~l~~~---~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lp--- 247 (394)
T 1k8k_B 174 SLPHLTRRLDIAGRDITRYLIKLLLLR---GYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLP--- 247 (394)
T ss_dssp ECSTTCEEESCCHHHHHHHHHHHHHHT---TCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---
T ss_pred EcccceEEeeccHHHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECC---
Confidence 232233567899999999988887653 1222212344555555543311110 00 11112233333
Q ss_pred CCcceEEeeCHHHHHHHhHHHHH---------HhhHHHHHHHHHcC--CCccCcceEEEecCccChHHHHHHHHHhcCCC
Q psy7639 2229 DGIDFYTKISRARFEELCSDLFR---------STLQPVEKALQDAK--LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK 2297 (2568)
Q Consensus 2229 ~~~d~~~~itr~~fe~l~~~l~~---------~~~~~~~~~l~~a~--~~~~~i~~vilvGGstriP~v~~~l~~~f~~~ 2297 (2568)
+|. .++|++++|+ ..+-||+ .+.+.+.++|..+. +.+.-++.|+|+||+|++|.+.+.|++.+...
T Consensus 248 dg~--~i~i~~erf~-~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~ 324 (394)
T 1k8k_B 248 DGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQL 324 (394)
T ss_dssp TSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHH
T ss_pred CCC--EEEECchhhc-ChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHH
Confidence 333 4677888885 4455543 36677888888774 33456788999999999998888887776320
Q ss_pred ----------------CC--CCCCCcchhHHhhHHHHHH
Q psy7639 2298 ----------------SL--NLSINPDEAVAYGAAVQAA 2318 (2568)
Q Consensus 2298 ----------------~~--~~~~npdeava~GAa~~aa 2318 (2568)
++ ...-+|..++.+||++.|.
T Consensus 325 ~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 325 YLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp HHHHTCSSCCCTTCCCCC---------------------
T ss_pred HhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 11 1123556899999998876
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=169.56 Aligned_cols=223 Identities=16% Similarity=0.154 Sum_probs=145.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcc
Q psy7639 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGER 1559 (2568)
Q Consensus 1480 ~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~ 1559 (2568)
..|.|+++.+|+.+++.+..++.. -..+++..+ ...++...++.||||+|+++++..... .
T Consensus 33 g~~~e~a~~vl~~~~~~a~~~~~~---~~~~a~t~~------------~~~a~~~~~~~Vne~~aha~a~~~~~~----~ 93 (276)
T 4ehu_A 33 GTGTTGPSRVLEKLYGKTGLARED---IKKVVVTGY------------GRMNYSDADKQISELSCHARGVNFIIP----E 93 (276)
T ss_dssp CTTSSHHHHHHHHHHHHHCCCGGG---EEEEEEEST------------TGGGCCSCSEECCHHHHHHHHHHHHST----T
T ss_pred CCCHHHHHHHHHHHHHHCCCcchh---ccccccCch------------HHHHhhCCCcccchHHHHHHHHHHhCC----C
Confidence 446678889999999888443321 112222222 235778889999999999998765442 2
Q ss_pred eEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhc
Q psy7639 1560 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR 1639 (2568)
Q Consensus 1560 ~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~ 1639 (2568)
...|+|+|||+++++++. .+| .+++....++..+|+.+|++.++++|...+... .. .+..++.
T Consensus 94 ~~~vl~lgG~~~~~~~~~-~~g-~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~------------~~---~~~~a~~ 156 (276)
T 4ehu_A 94 TRTIIDIGGQDAKVLKLD-NNG-RLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSEL------------GS---ISMNSQN 156 (276)
T ss_dssp CCEEEEECSSCEEEEEEC-TTS-CEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGH------------HH---HHTTCSS
T ss_pred CCeEEEEcCCCceEEEEE-ecC-ceEEEEeCCCcCcchhhHHHHHHHHhccChhhh------------HH---HHhcCCC
Confidence 358999999999999996 355 678888889999999999999999864322211 00 1111111
Q ss_pred --ccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHH
Q psy7639 1640 --TLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 1717 (2568)
Q Consensus 1640 --~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I 1717 (2568)
.+++.... +....-....-.....++++..+.+.+.+.+....... ..++.|+|+||.+++|.||+.+
T Consensus 157 ~~~i~~~~~~------f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l 226 (276)
T 4ehu_A 157 EVSISSTCTV------FAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAM 226 (276)
T ss_dssp CCCCCCCSHH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHH
T ss_pred CCCcCCccch------hhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHH
Confidence 11110000 00000000001112235666666666666655554443 3467799999999999999999
Q ss_pred HhhhcCCcccccCCchhhhhccHHHHHHHHhC
Q psy7639 1718 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 1749 (2568)
Q Consensus 1718 ~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~~ 1749 (2568)
++.| +.++.++.||++++|+|||++|.-...
T Consensus 227 ~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~~ 257 (276)
T 4ehu_A 227 AREI-NTEIIVPDIPQLTGALGAALYAFDEAK 257 (276)
T ss_dssp HHHH-TSCEECCSSGGGHHHHHHHHHHHHHHH
T ss_pred HHHH-CCCeeeCCCcchHHHHHHHHHHHHHHh
Confidence 9999 677889999999999999999965543
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-13 Score=140.96 Aligned_cols=97 Identities=35% Similarity=0.642 Sum_probs=74.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhh--ccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7639 2472 QKERISARNNLEAYVFNVKQALDN--AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 2549 (2568)
Q Consensus 2472 ~re~~eakN~lE~~iy~~r~~L~~--~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi~~r~~ 2549 (2568)
+|+++++||.||+|||++++.|.+ +.+++++++|++|+.+|+++.+||++++++++++|+.++++|++++.||..|+|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999987 668999999999999999999999876668899999999999999999999998
Q ss_pred cCCCCCC---------CCCCCCCcCCCC
Q psy7639 2550 GGASAGD---------MPRGGPTVEEVD 2568 (2568)
Q Consensus 2550 e~~g~~~---------~~g~g~~~~e~d 2568 (2568)
+.+|++| ++|+||||||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~ee~d 120 (120)
T 2p32_A 93 QSAGGAPPGAAPGGAAGGAGGPTIEEVD 120 (120)
T ss_dssp CC--------------------------
T ss_pred HhccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 6432211 122589999998
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-12 Score=160.19 Aligned_cols=205 Identities=15% Similarity=0.217 Sum_probs=142.1
Q ss_pred CeEEEEEcCCCCHHHH-HHHHHHHHHcCC------------CeeeecchhHHHHHHhccccCCC----CCceEEEEEeCC
Q psy7639 710 RDAVITVPAYFNDAQR-QATKDAGAIAGL------------NVMRIVNEPTAAALAYGLDKNLK----GERNVLIFDLGG 772 (2568)
Q Consensus 710 ~~~VITVPa~f~~~qr-~al~~Aa~~AGl------------~~l~li~Ep~AAAl~y~~~~~~~----~~~~vlV~D~Gg 772 (2568)
..+|+++|..+...+| +++++++..++- ..+.+++||.||+++++.+.... .+..++|+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3789999999988887 589999876543 56789999999999997653111 467899999999
Q ss_pred ceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCcce
Q psy7639 773 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEAS 852 (2568)
Q Consensus 773 GT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~~ 852 (2568)
||+|++++. ++ . -+...++...+||..+++.+.+++.+++. +..+ +.. ..++.+.
T Consensus 194 gTtd~~v~~--~~-~-~~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l--~~~-------~i~~g~~--------- 248 (355)
T 3js6_A 194 GTTIIDTYQ--NM-K-RVEEESFVINKGTIDFYKRIASHVSKKSE---GASI--TPR-------MIEKGLE--------- 248 (355)
T ss_dssp SCEEEEEEE--TT-E-ECGGGCEEESCCHHHHHHHHHHHTC-------------CHH-------HHHSCCC---------
T ss_pred CcEEEEEEc--CC-E-EccccccCcchHHHHHHHHHHHHHHHhcC---CCcC--CHH-------HHhcCCc---------
Confidence 999999983 44 2 12223444679999999999999887642 1111 111 1111110
Q ss_pred eeeccccCCcc--eEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHH--HHHHHHHHhCCc
Q psy7639 853 IEIDALYDGID--FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK--VQSLLQNFFCGK 928 (2568)
Q Consensus 853 i~i~~l~~~~d--~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~--v~~~l~~~f~~~ 928 (2568)
+.. .+.+ -.+.+ .+.+++.++++++++.+.|++.+.+ ++.++.|+|+||++.++. |++.|++.|+..
T Consensus 249 ~~~----~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~ 319 (355)
T 3js6_A 249 YKQ----CKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA 319 (355)
T ss_dssp -----------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC
T ss_pred ccc----ccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC
Confidence 000 0000 01122 2356777888888888888888764 466899999999999998 999999988432
Q ss_pred cccccCCchhHHHhhHHHHHHHHcC
Q psy7639 929 SLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 929 ~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.||..|+|+|+..++..+.+
T Consensus 320 -----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 320 -----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp -----SSGGGHHHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHh
Confidence 79999999999999988764
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-12 Score=157.44 Aligned_cols=228 Identities=15% Similarity=0.208 Sum_probs=153.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcc-cEEEEccCCCCHHHH-HHHHHHHHHcCC------------ceeEEechhhHHHhh
Q psy7639 2056 EEISSMVLTKMKETAEAYLGHSVR-DAVITVPAYFNDAQR-QATKDAGAIAGL------------NVMRIVNEPTAAALA 2121 (2568)
Q Consensus 2056 eei~a~iL~~lk~~ae~~~g~~v~-~aVItVPa~f~~~qR-~a~~~Aa~~AGl------------~vl~linEptAaala 2121 (2568)
++--.++|.-|...+..+-+..+. ..|+.+|.-+...|| ++++++..-++- +-..++.||.||+++
T Consensus 90 ~~~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~ 169 (355)
T 3js6_A 90 KSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLD 169 (355)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHH
Confidence 344445555555544432122232 789999999888887 589999885543 456899999999999
Q ss_pred cccccCcC----CcceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCH
Q psy7639 2122 YGLDKNLK----GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNP 2197 (2568)
Q Consensus 2122 Yg~~~~~~----~~~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~ 2197 (2568)
|+++.... .+.+++|+|+||||+|++++ .+| . -+....+...+||..+++.|.+++.+++. +.++. .
T Consensus 170 ~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~--~~~-~-~~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~ 240 (355)
T 3js6_A 170 LNMENGKVFKAFTEGKYSVLDFGSGTTIIDTY--QNM-K-RVEEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P 240 (355)
T ss_dssp TTEETTEECHHHHTCEEEEEEECSSCEEEEEE--ETT-E-ECGGGCEEESCCHHHHHHHHHHHTC-----------C--H
T ss_pred HHHccCccccccccCcEEEEEeCCCcEEEEEE--cCC-E-EccccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H
Confidence 98754211 36789999999999999998 356 2 22223445679999999999998877532 23332 2
Q ss_pred HHHHHHHHHHHHHhhccCCcceeEEEEecccCCcce--EEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEE
Q psy7639 2198 RALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDF--YTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 2275 (2568)
Q Consensus 2198 ~~~~~L~~~~e~~K~~LS~~~~~~~~i~~~~~~~d~--~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vi 2275 (2568)
.+ .++-+. .. ..+.+. ...+ .+.+++.++++++++.+.++++|.+ ++.++.|+
T Consensus 241 ~~-------i~~g~~---------~~----~~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Iv 295 (355)
T 3js6_A 241 RM-------IEKGLE---------YK----QCKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRII 295 (355)
T ss_dssp HH-------HHSCCC--------------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEE
T ss_pred HH-------HhcCCc---------cc----cccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEE
Confidence 11 111111 00 001100 1112 3456777888888888888888864 57789999
Q ss_pred EecCccChHH--HHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHHhhC
Q psy7639 2276 LVGGSTRIPK--VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 2322 (2568)
Q Consensus 2276 lvGGstriP~--v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~ls~ 2322 (2568)
|+||++.++. +++.|++.|+.. -||..|+|.|+..++..+.+
T Consensus 296 l~GGGa~l~~~~l~~~i~~~~~~~-----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 296 VTGGGANIHFDSLSHYYSDVFEKA-----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp EESTTHHHHHHHHHHHSSSCEECC-----SSGGGHHHHHHHHHHHHHHH
T ss_pred EECcchhcchhhHHHHHHHHCCCC-----CCcHHHHHHHHHHHHHHHHh
Confidence 9999999998 999999998432 89999999999999988764
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-12 Score=134.06 Aligned_cols=94 Identities=34% Similarity=0.704 Sum_probs=70.4
Q ss_pred HHHHHHhHHHHHHHHHHHhh--hccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7639 2475 RISARNNLEAYVFNVKQALD--NAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 2552 (2568)
Q Consensus 2475 ~~eakN~lE~~iy~~r~~L~--~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi~~r~~e~~ 2552 (2568)
++++||+||+|||++|+.|. ++.+++++++|++|+.+|+++.+||+++++++.++|++++++|++++.||..|+|+.+
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~~ 81 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSA 81 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999998 5668999999999999999999999865556789999999999999999999999643
Q ss_pred CCCC--CC--------------CCCCCcCCCC
Q psy7639 2553 SAGD--MP--------------RGGPTVEEVD 2568 (2568)
Q Consensus 2553 g~~~--~~--------------g~g~~~~e~d 2568 (2568)
|++| || ++||||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~d 113 (113)
T 1ud0_A 82 GGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113 (113)
T ss_dssp CCCCCC--------------------------
T ss_pred cCCCCCCCCCCCCcccCCCCCCCCCCCcccCC
Confidence 2211 11 2479999997
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=145.39 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=144.3
Q ss_pred cceEEEEecCCCCH--HHHHHHHHHHHHc--------C------CceEEEEechhHHHHHhhccccccCcceEEEEEeCC
Q psy7639 1505 VRDAVITVPAYFND--AQRQATKDAGAIA--------G------LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 1568 (2568)
Q Consensus 1505 ~~~~ViTVPa~f~~--~qR~~~~~Aa~~A--------G------L~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GG 1568 (2568)
...+|+.+|..+.. .+|+.+++....- | ++.+.++.||.+|.+.+. ....+.+++|+|+||
T Consensus 105 ~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~---~~~~~~~v~vvDiGg 181 (329)
T 4apw_A 105 KVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ---ENFKNKNVAVIDFGG 181 (329)
T ss_dssp EEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC---CCCTTCEEEEEEECS
T ss_pred eEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc---hhhccCCEEEEEeCC
Confidence 45799999987764 3687777766521 2 134667888877776542 123567899999999
Q ss_pred cceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeE
Q psy7639 1569 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEAS 1648 (2568)
Q Consensus 1569 GT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~ 1648 (2568)
||+|++++. +|.. +...++...+||.++++.|++++.. .+|+..+.. ..+|++|+.-+ .
T Consensus 182 gTtd~~v~~--~g~~--~~~~~~~~~~G~~~~~~~i~~~l~~---~~~g~~i~~---------~~~e~i~~~g~----~- 240 (329)
T 4apw_A 182 LNMGFSLYR--NCVV--NPSERFIEEHGVKDLIIRVGDALTD---LNNGNLITN---------EQAESALNNGY----M- 240 (329)
T ss_dssp SCEEEEEEE--TTEE--CGGGCEEESCCHHHHHHHHHTSSSS---CSSCSCTTS---------BTTTTCSSSCS----S-
T ss_pred CcEEEEEEE--CCEE--eeccccchhhHHHHHHHHHHHHHHh---hccCCCCCH---------HHHHHHHhcCC----c-
Confidence 999999998 5621 3233455669999999999988543 045444321 13444554311 0
Q ss_pred EEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccc
Q psy7639 1649 IEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL 1728 (2568)
Q Consensus 1649 i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~ 1728 (2568)
..+.+. ..++.+.+++.++++++.+.+.+++. +.+++.++.|+|+||++.+ +.+++++.|+ ..+..
T Consensus 241 ------~~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~-~~v~v 306 (329)
T 4apw_A 241 ------KKGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYP-NNSII 306 (329)
T ss_dssp ------CEECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHST-TCEEC
T ss_pred ------ccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcC-CCCEe
Confidence 001111 13567888888888888888877766 2456668999999999998 6799999994 35667
Q ss_pred cCCchhhhhccHHHHHHHHhC
Q psy7639 1729 SINPDEAVAYGAAVQAAILSG 1749 (2568)
Q Consensus 1729 ~~nP~eAVA~GAai~a~~l~~ 1749 (2568)
..||..|+|.|+..++...++
T Consensus 307 ~~~P~~a~a~G~~~~~~~k~~ 327 (329)
T 4apw_A 307 TNNSQWTTCEGLYKVAVAKYC 327 (329)
T ss_dssp CSSGGGHHHHHHHHHHHHHHC
T ss_pred cCCChhhHHHHHHHHHhhhhc
Confidence 889999999999999887765
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.7e-10 Score=115.42 Aligned_cols=82 Identities=39% Similarity=0.795 Sum_probs=75.8
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhhh--ccCCCCHhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy7639 1102 RQKERISARNNLEAYVFNVKQALDN--AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKM 1179 (2568)
Q Consensus 1102 ~~~~~~~~~N~lE~~iy~~r~~l~~--~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~ 1179 (2568)
++|+++++||+||+|||.+++.|.+ ...+++++++++|.+.|+++.+||+++.++++++|+.++++|++++.||..|+
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999976 44789999999999999999999998888999999999999999999999999
Q ss_pred hcCC
Q psy7639 1180 HGGA 1183 (2568)
Q Consensus 1180 ~~~~ 1183 (2568)
++..
T Consensus 83 y~~~ 86 (113)
T 3lof_A 83 YQGA 86 (113)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 9764
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=137.90 Aligned_cols=241 Identities=19% Similarity=0.161 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCC--CeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCC-Cce
Q psy7639 116 ISSMVLTKMKETAEAYLGHSV--RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKG-ERN 191 (2568)
Q Consensus 116 l~a~~L~~l~~~ae~~l~~~~--~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~-~~~ 191 (2568)
....+++|+.. +.++..+ ..+++|.|+..+...|++|.+.+ +..|+..+.++.+|.+|+++.+....... ..+
T Consensus 104 ~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~t 180 (427)
T 3dwl_A 104 HMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180 (427)
T ss_dssp HHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCC
T ss_pred HHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCce
Confidence 34455555442 2344332 46999999999999999999988 78899999999999999998875422111 356
Q ss_pred EEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHh
Q psy7639 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT 271 (2568)
Q Consensus 192 vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~ 271 (2568)
-||+|+|+|+|+++.+. +|.. +........+||+++|+.|.++|.++... ... ...+|.+|+.
T Consensus 181 glVVDiG~g~T~v~PV~--~G~~--l~~~~~rl~~gG~~lt~~L~~lL~~~~~~------~~~-------~~~~~~IKe~ 243 (427)
T 3dwl_A 181 GTVVDSGDGVTHIIPVA--EGYV--IGSSIKTMPLAGRDVTYFVQSLLRDRNEP------DSS-------LKTAERIKEE 243 (427)
T ss_dssp EEEEEESSSCEEEEEEE--TTEE--CGGGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHHH
T ss_pred EEEEECCCCceEEEEEE--CCEE--ehhhheeccccHHHHHHHHHHHHHHcCCC------chh-------HHHHHHHHHh
Confidence 89999999999999983 3521 11111225789999999998887654321 000 1234555555
Q ss_pred cCCCCc-----------eEEEEe--ee--ccCcceEEeecHHHH---HHHHhhh------hhhhHHHHHHHHHHcCCCC-
Q psy7639 272 LSSSTE-----------ASIEID--AL--YDGIDFYTKISRARF---EELCSDL------FRSTLQPVEKALQDAKLDK- 326 (2568)
Q Consensus 272 LS~~~~-----------~~i~i~--~l--~~~~d~~~~itR~ef---e~l~~~l------~~~i~~~i~~~l~~a~~~~- 326 (2568)
+..-.. ....+. .+ .+|....+.|..++| |-++.|- ...+.+.|.+.|..+....
T Consensus 244 ~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr 323 (427)
T 3dwl_A 244 CCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVR 323 (427)
T ss_dssp HCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHH
T ss_pred cCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHH
Confidence 432110 000010 01 234445677888887 4566662 3467888889888775321
Q ss_pred -CCCCeEEEcCCccchHHHHHHHHHHhC-------------------C--CcccccCCchhHHHhhHHHHHH
Q psy7639 327 -SAIHDVVLVGGSTRIPKVQSLLQNFFC-------------------G--KSLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 327 -~~i~~ViLvGG~sriP~v~~~l~~~f~-------------------~--~~v~~~~npdeaVA~GAa~~aa 376 (2568)
.-...|+|+||+|.+|.+.++|++.+. . .++..+.++..++=+|++++|.
T Consensus 324 ~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 324 KGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp HHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred HHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 114679999999999999998887651 1 1223345778899999999986
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=136.52 Aligned_cols=205 Identities=14% Similarity=0.150 Sum_probs=141.7
Q ss_pred CeEEEEEcCCCCH--HHHHHHHHHHHHc--------C------CCeeeecchhHHHHHHhccccCCCCCceEEEEEeCCc
Q psy7639 710 RDAVITVPAYFND--AQRQATKDAGAIA--------G------LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGG 773 (2568)
Q Consensus 710 ~~~VITVPa~f~~--~qr~al~~Aa~~A--------G------l~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgG 773 (2568)
.++|++.|..+-. .+|+.+++....- | +..+.+++||.+|.+.+. ....+..++|+|+|||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~---~~~~~~~v~vvDiGgg 182 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ---ENFKNKNVAVIDFGGL 182 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC---CCCTTCEEEEEEECSS
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc---hhhccCCEEEEEeCCC
Confidence 4789999998764 3677787776521 2 134778999998887752 2235688999999999
Q ss_pred eeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCCCCccee
Q psy7639 774 TFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASI 853 (2568)
Q Consensus 774 T~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~~i 853 (2568)
|+|++++. .+ .+ +....+...+||.++++.|.+++.. .+++..+... .+|++|+.- ..
T Consensus 183 Ttd~~v~~--~g-~~-~~~~~~~~~~G~~~~~~~i~~~l~~---~~~g~~i~~~---------~~e~i~~~g----~~-- 240 (329)
T 4apw_A 183 NMGFSLYR--NC-VV-NPSERFIEEHGVKDLIIRVGDALTD---LNNGNLITNE---------QAESALNNG----YM-- 240 (329)
T ss_dssp CEEEEEEE--TT-EE-CGGGCEEESCCHHHHHHHHHTSSSS---CSSCSCTTSB---------TTTTCSSSC----SS--
T ss_pred cEEEEEEE--CC-EE-eeccccchhhHHHHHHHHHHHHHHh---hccCCCCCHH---------HHHHHHhcC----Cc--
Confidence 99999998 34 22 3333455779999999999887764 0333322211 233333320 01
Q ss_pred eeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCcccccc
Q psy7639 854 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 933 (2568)
Q Consensus 854 ~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~ 933 (2568)
..+.+. ..++.+++++.++++++++.+.+++. +..++.++.|+|+||++.+ +.+.|++.|+ .++...
T Consensus 241 -----~~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~-~~v~v~ 307 (329)
T 4apw_A 241 -----KKGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYP-NNSIIT 307 (329)
T ss_dssp -----CEECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHST-TCEECC
T ss_pred -----ccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcC-CCCEec
Confidence 001111 14567788888888888888777766 3455568999999999998 5699999995 346667
Q ss_pred CCchhHHHhhHHHHHHHHc
Q psy7639 934 INPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 934 ~npdeaVA~GAAl~aa~ls 952 (2568)
.||..|+|+|+..++....
T Consensus 308 ~~P~~a~a~G~~~~~~~k~ 326 (329)
T 4apw_A 308 NNSQWTTCEGLYKVAVAKY 326 (329)
T ss_dssp SSGGGHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhhh
Confidence 8999999999999887644
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=135.94 Aligned_cols=204 Identities=22% Similarity=0.212 Sum_probs=131.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHc-CC--ceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEE
Q psy7639 1508 AVITVPAYFNDAQRQATKDAGAIA-GL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 1584 (2568)
Q Consensus 1508 ~ViTVPa~f~~~qR~~~~~Aa~~A-GL--~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ 1584 (2568)
.++|....+ -+.+.+|.+.+ || ++-. -||.||++++..+. ..+..++++|+||||+|+|++. +|...
T Consensus 361 hmVt~~~~~----m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeD--E~eLGvaiIDmGGGTTd~sVf~--~G~lv 430 (610)
T 2d0o_A 361 SMVKSDRLQ----MAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTP--GTTRPLAILDLGAGSTDASIIN--PKGDI 430 (610)
T ss_dssp EEEECSCCC----HHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTST--TCCSSEEEEEECSSEEEEEEEC--TTCCE
T ss_pred heeecCHHH----HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCC--CCcCCeEEEEeCCCcceEEEEc--CCcEE
Confidence 778887766 46688888999 99 7777 99999999987654 3456789999999999999998 55332
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCC---------CCeeEEEE--cc
Q psy7639 1585 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS---------STEASIEI--DA 1653 (2568)
Q Consensus 1585 ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~---------~~~~~i~i--~~ 1653 (2568)
.... -..||+.++..|+.-|. .. | +..||+.|+--+. ..+..+.+ +.
T Consensus 431 ~a~~----ip~gG~~VT~DIA~~Lg--------t~---d-------~~~AErIK~YG~A~ve~lf~~~dede~Iev~~~~ 488 (610)
T 2d0o_A 431 IATH----LAGAGDMVTMIIARELG--------LE---D-------RYLAEEIKKYPLAKVESLFHLRHEDGSVQFFSTP 488 (610)
T ss_dssp EEEE----EECSHHHHHHHHHHHHT--------CC---C-------HHHHHHHHHSCEEEECSSSEEEETTSCEEECSSC
T ss_pred EEEE----eccchHHHHHHHHHHhC--------CC---C-------HHHHHHhcccCceeecccccccCCCCeEEEecCC
Confidence 2211 23699999999987742 11 0 2467888872111 12223444 22
Q ss_pred ccCC---c------ceeeecCHHH--HHHHHhHHHHHHHHH--HHHHHHHcCC-----CCccccEEEEecCccCChhHHH
Q psy7639 1654 LYDG---I------DFYTKISRAR--FEELCSDLFRSTLQP--VEKALQDAKL-----DKSAIHDVVLVGGSTRIPKVQS 1715 (2568)
Q Consensus 1654 ~~~~---~------~~~~~itr~~--fe~l~~pli~~i~~~--i~~~L~~a~~-----~~~~Id~ViLVGGssr~P~V~~ 1715 (2568)
.... . +.-..| +.. +|+ ++-+-+++.+. +.++|+..+. +..+|..|+|+||+|+++.+.+
T Consensus 489 lgp~~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~E 566 (610)
T 2d0o_A 489 LPPAVFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQ 566 (610)
T ss_dssp CCGGGTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHH
T ss_pred CCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHH
Confidence 1100 0 001123 344 444 44333333322 2233554422 3467899999999999999999
Q ss_pred HHHhhhcCCcccc-------cCCchhhhhccHHHHHH
Q psy7639 1716 LLQNFFCGKSLNL-------SINPDEAVAYGAAVQAA 1745 (2568)
Q Consensus 1716 ~I~~~f~~~~v~~-------~~nP~eAVA~GAai~a~ 1745 (2568)
+..+.|+.-.++. ..+|..|+|.|.+++..
T Consensus 567 lA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 567 LVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp HHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred HHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 9999996512222 35899999999988753
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-09 Score=134.96 Aligned_cols=203 Identities=19% Similarity=0.166 Sum_probs=131.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHc-CC--ceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEE
Q psy7639 1508 AVITVPAYFNDAQRQATKDAGAIA-GL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 1584 (2568)
Q Consensus 1508 ~ViTVPa~f~~~qR~~~~~Aa~~A-GL--~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ 1584 (2568)
.++|....+= +.+.+|.+.+ || ++-. -||.||++++..+. ..+..++++|+||||+|+|++. +|...
T Consensus 363 hmVt~~~~~m----~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTed--E~elGvaiIDmGgGTTd~sVf~--~g~lv 432 (607)
T 1nbw_A 363 AMVKADRLQM----QVIARELSARLQTEVVVGG--VEANMAIAGALTTP--GCAAPLAILDLGAGSTDAAIVN--AEGQI 432 (607)
T ss_dssp EEEECCCCCS----CCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTST--TCCSSEEEEEECSSEEEEEEEC--SSSCE
T ss_pred heeecCHHHH----HHHHHHHHhccCCcceecc--ccHHHhhhhhcCCC--CCcCCeEEEEeCCCcceEEEEc--CCcEE
Confidence 7788877664 4478888888 99 6666 99999999987654 3456789999999999999998 55332
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCC---------CCeeEEEE--cc
Q psy7639 1585 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS---------STEASIEI--DA 1653 (2568)
Q Consensus 1585 ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~---------~~~~~i~i--~~ 1653 (2568)
.... -..||+.++..|+.-|. .. | +..||+.|+--+. ..+..+.+ +.
T Consensus 433 ~a~~----ip~gG~~VT~DIA~~Lg--------~~---d-------~~~AErIK~YG~A~~e~lf~~~dede~Iev~~~~ 490 (607)
T 1nbw_A 433 TAVH----LAGAGNMVSLLIKTELG--------LE---D-------LSLAEAIKKYPLAKVESLFSIRHENGAVEFFREA 490 (607)
T ss_dssp EEEE----EECCHHHHHHHHHHHHT--------CS---C-------HHHHHHHHHSCEEEECSSSEEEETTSCEEECSSC
T ss_pred EEEE----eccchHHHHHHHHHHhC--------CC---C-------HHHHHHhcccCceeecccccccCCCCeEEEecCC
Confidence 2211 23699999999987742 11 0 2467888872111 11223344 21
Q ss_pred ccCC---c------ceeeecCHHH--HHHHHhHHHHHHHHH--HHHHHHHcCC-----CCccccEEEEecCccCChhHHH
Q psy7639 1654 LYDG---I------DFYTKISRAR--FEELCSDLFRSTLQP--VEKALQDAKL-----DKSAIHDVVLVGGSTRIPKVQS 1715 (2568)
Q Consensus 1654 ~~~~---~------~~~~~itr~~--fe~l~~pli~~i~~~--i~~~L~~a~~-----~~~~Id~ViLVGGssr~P~V~~ 1715 (2568)
.... . +.-..| +.. +|+ ++-+-+++.+. +.++|+..+. +..+|..|+|+||+|++|.+.+
T Consensus 491 lgp~~~~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~e 568 (607)
T 1nbw_A 491 LSPAVFAKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQ 568 (607)
T ss_dssp CCGGGTTCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHH
T ss_pred CCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHH
Confidence 1100 0 001123 333 444 43333333322 3444776654 2357799999999999999999
Q ss_pred HHHhhhcCCcccc-------cCCchhhhhccHHHHH
Q psy7639 1716 LLQNFFCGKSLNL-------SINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1716 ~I~~~f~~~~v~~-------~~nP~eAVA~GAai~a 1744 (2568)
+..+.|+.-.++. ..+|..|+|.|.++|.
T Consensus 569 lA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 569 LITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp HHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHH
T ss_pred HHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhh
Confidence 9999996512222 3589999999998774
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-08 Score=130.28 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--CC-eEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCc
Q psy7639 115 EISSMVLTKMKETAEAYLGHS--VR-DAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGER 190 (2568)
Q Consensus 115 el~a~~L~~l~~~ae~~l~~~--~~-~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~ 190 (2568)
+....+++|+... .++.. -. .++||.|+......|++|.+.+ +..|+..+.++.+|.||+++++..
T Consensus 93 d~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~------- 162 (498)
T 3qb0_A 93 DTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP------- 162 (498)
T ss_dssp HHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS-------
T ss_pred HHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCC-------
Confidence 3445566665532 23322 22 5899999999999999999975 788999999999999999888752
Q ss_pred eEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHH
Q psy7639 191 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (2568)
Q Consensus 191 ~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~ 241 (2568)
+-||+|+|+|+|+++.+- .|. -+........+||+++|+.|.++|.+
T Consensus 163 tglVVDiG~g~T~vvPI~--~G~--~l~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 163 NCLVVDIGHDTCSVSPIV--DGM--TLSKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp SEEEEEECSSCEEEEEEE--TTE--ECGGGCEEESCSHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCcEEEEEEe--CCE--EccccceeccccHHHHHHHHHHHHHh
Confidence 359999999999999884 452 12111122579999999999998864
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=130.32 Aligned_cols=242 Identities=19% Similarity=0.142 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHhCCC--CCeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCC-CCce
Q psy7639 689 ISSMVLTKMKETAEAYLGHS--VRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLK-GERN 764 (2568)
Q Consensus 689 v~a~iL~~L~~~ae~~~~~~--~~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~-~~~~ 764 (2568)
....+++|+.. ..++.. -..+++|.|...+..+|+.|.+.+ +.+|++.+.++.+|.+|+++.+...... ...+
T Consensus 104 ~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~t 180 (427)
T 3dwl_A 104 HMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180 (427)
T ss_dssp HHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCC
T ss_pred HHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCce
Confidence 44445554432 234433 247999999999999999999988 7899999999999999999887532111 1356
Q ss_pred EEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHh
Q psy7639 765 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT 844 (2568)
Q Consensus 765 vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~ 844 (2568)
-||+|+|+|+|+++.+. +|. -+........+||+++|+.|.++|..+... .. =...+|.+|+.
T Consensus 181 glVVDiG~g~T~v~PV~--~G~--~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~------~~-------~~~~~~~IKe~ 243 (427)
T 3dwl_A 181 GTVVDSGDGVTHIIPVA--EGY--VIGSSIKTMPLAGRDVTYFVQSLLRDRNEP------DS-------SLKTAERIKEE 243 (427)
T ss_dssp EEEEEESSSCEEEEEEE--TTE--ECGGGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHHH
T ss_pred EEEEECCCCceEEEEEE--CCE--EehhhheeccccHHHHHHHHHHHHHHcCCC------ch-------hHHHHHHHHHh
Confidence 89999999999999884 452 222212235799999999998887654321 00 01234555555
Q ss_pred cCCCCcc-------------eeeeccc--cCCcceEEecchHhH---HHHHHHH------HHhHHHHHHHHHHHccCC--
Q psy7639 845 LSSSTEA-------------SIEIDAL--YDGIDFYTKISRARF---EELCSDL------FRSTLQPVEKALQDAKLD-- 898 (2568)
Q Consensus 845 LS~~~~~-------------~i~i~~l--~~~~d~~~~itr~ef---e~l~~~l------~~~i~~~i~~~L~~a~~~-- 898 (2568)
+..-... .+.--.+ .+|....++|..++| |-|++|- ...+.+.|.+.|.++..+
T Consensus 244 ~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr 323 (427)
T 3dwl_A 244 CCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVR 323 (427)
T ss_dssp HCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHH
T ss_pred cCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHH
Confidence 4432100 0000012 234444667777776 3455552 234677778888765432
Q ss_pred ccCcCeEEEEcCCCCcHHHHHHHHHHhCC---------------------ccccccCCchhHHHhhHHHHHHH
Q psy7639 899 KSAIHDVVLVGGSTRIPKVQSLLQNFFCG---------------------KSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 899 ~~~I~~ViLvGGssriP~v~~~l~~~f~~---------------------~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
+.-...|+|+||+|.+|.+.++|++.+.. .++..+.++..++=+|++++|..
T Consensus 324 ~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 324 KGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp HHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHS
T ss_pred HHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccc
Confidence 12246799999999999999999875511 12233456778999999999863
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-09 Score=111.21 Aligned_cols=82 Identities=33% Similarity=0.637 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhccccccc
Q psy7639 1899 QKERISARNNLEAYVFNVKQALDN--AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 1976 (2568)
Q Consensus 1899 ~~~~~~~rn~le~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y 1976 (2568)
+|+++++||++|+|+|+++.+|.+ +++++++++++.|...|+++++||+.+..++.++|+.++++|++++.||++++|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999987 888999999999999999999999876667999999999999999999999999
Q ss_pred CCCC
Q psy7639 1977 GGAG 1980 (2568)
Q Consensus 1977 ~~~~ 1980 (2568)
++++
T Consensus 93 ~~~~ 96 (120)
T 2p32_A 93 QSAG 96 (120)
T ss_dssp CC--
T ss_pred Hhcc
Confidence 6543
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-08 Score=124.88 Aligned_cols=204 Identities=23% Similarity=0.224 Sum_probs=133.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHc-CC--CeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcEE
Q psy7639 712 AVITVPAYFNDAQRQATKDAGAIA-GL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 788 (2568)
Q Consensus 712 ~VITVPa~f~~~qr~al~~Aa~~A-Gl--~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~ 788 (2568)
.+||.... +-+.+.+|.+.+ || ++-. -||.||+++..... +.+..++++||||||||+|++. +|...
T Consensus 361 hmVt~~~~----~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeD--E~eLGvaiIDmGGGTTd~sVf~--~G~lv 430 (610)
T 2d0o_A 361 SMVKSDRL----QMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTP--GTTRPLAILDLGAGSTDASIIN--PKGDI 430 (610)
T ss_dssp EEEECSCC----CHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTST--TCCSSEEEEEECSSEEEEEEEC--TTCCE
T ss_pred heeecCHH----HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCC--CCcCCeEEEEeCCCcceEEEEc--CCcEE
Confidence 56666554 356778888888 99 6666 99999999886553 4556799999999999999986 34322
Q ss_pred EEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCC-C---------Ccceeee--c
Q psy7639 789 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-S---------TEASIEI--D 856 (2568)
Q Consensus 789 ~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~-~---------~~~~i~i--~ 856 (2568)
.... ...||+.++..|..-|.-. + +..||+.|+ ... . ..-.+.+ +
T Consensus 431 ~a~~----ip~gG~~VT~DIA~~Lgt~-----------d-------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~ 487 (610)
T 2d0o_A 431 IATH----LAGAGDMVTMIIARELGLE-----------D-------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFST 487 (610)
T ss_dssp EEEE----EECSHHHHHHHHHHHHTCC-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSS
T ss_pred EEEE----eccchHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecC
Confidence 2222 3479999988776554321 0 236888888 422 1 1223444 2
Q ss_pred ccc----CC-----cceEEecchHh--HHHHHHHHHHhHHHH--HHHHHHHccC-----CccCcCeEEEEcCCCCcHHHH
Q psy7639 857 ALY----DG-----IDFYTKISRAR--FEELCSDLFRSTLQP--VEKALQDAKL-----DKSAIHDVVLVGGSTRIPKVQ 918 (2568)
Q Consensus 857 ~l~----~~-----~d~~~~itr~e--fe~l~~~l~~~i~~~--i~~~L~~a~~-----~~~~I~~ViLvGGssriP~v~ 918 (2568)
.+. .. .+.-..| +.+ +|+ ++-+-+++.+. +..+|+..+. +..+|..|+|+||+|.+|.+.
T Consensus 488 ~lgp~~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ 565 (610)
T 2d0o_A 488 PLPPAVFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVP 565 (610)
T ss_dssp CCCGGGTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHH
T ss_pred CCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHH
Confidence 221 11 0112255 566 777 65555554443 3444655443 345679999999999999999
Q ss_pred HHHHHHhCCccc-------cccCCchhHHHhhHHHHHHH
Q psy7639 919 SLLQNFFCGKSL-------NLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 919 ~~l~~~f~~~~v-------~~~~npdeaVA~GAAl~aa~ 950 (2568)
++.++.|+.-.+ ...-.|..|+|.|.+++.+.
T Consensus 566 ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~~ 604 (610)
T 2d0o_A 566 QLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWHK 604 (610)
T ss_dssp HHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHhh
Confidence 999999965122 22458999999999887653
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-08 Score=124.09 Aligned_cols=203 Identities=20% Similarity=0.163 Sum_probs=131.8
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHc-CC--CeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcEE
Q psy7639 712 AVITVPAYFNDAQRQATKDAGAIA-GL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 788 (2568)
Q Consensus 712 ~VITVPa~f~~~qr~al~~Aa~~A-Gl--~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~ 788 (2568)
.+||....+ -+.+.+|.+.+ || ++-. -||.||+++..... +.+..++++||||||||+|++. +|...
T Consensus 363 hmVt~~~~~----m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTed--E~elGvaiIDmGgGTTd~sVf~--~g~lv 432 (607)
T 1nbw_A 363 AMVKADRLQ----MQVIARELSARLQTEVVVGG--VEANMAIAGALTTP--GCAAPLAILDLGAGSTDAAIVN--AEGQI 432 (607)
T ss_dssp EEEECCCCC----SCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTST--TCCSSEEEEEECSSEEEEEEEC--SSSCE
T ss_pred heeecCHHH----HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCC--CCcCCeEEEEeCCCcceEEEEc--CCcEE
Confidence 566665554 34566777777 88 5555 99999999886553 4556799999999999999986 34322
Q ss_pred EEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHhcCC-C---------Ccceeee--c
Q psy7639 789 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-S---------TEASIEI--D 856 (2568)
Q Consensus 789 ~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~LS~-~---------~~~~i~i--~ 856 (2568)
.... ...||+.++..|..-|.-. + +..||+.|+ ... . ..-.+.+ +
T Consensus 433 ~a~~----ip~gG~~VT~DIA~~Lg~~-----------d-------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~ 489 (607)
T 1nbw_A 433 TAVH----LAGAGNMVSLLIKTELGLE-----------D-------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFRE 489 (607)
T ss_dssp EEEE----EECCHHHHHHHHHHHHTCS-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSS
T ss_pred EEEE----eccchHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecC
Confidence 2222 3479999988776554322 0 236888888 422 1 1223344 2
Q ss_pred ccc----CC-----cceEEecchHh--HHHHHHHHHHhHHHH--HHHHHHHccCC-----ccCcCeEEEEcCCCCcHHHH
Q psy7639 857 ALY----DG-----IDFYTKISRAR--FEELCSDLFRSTLQP--VEKALQDAKLD-----KSAIHDVVLVGGSTRIPKVQ 918 (2568)
Q Consensus 857 ~l~----~~-----~d~~~~itr~e--fe~l~~~l~~~i~~~--i~~~L~~a~~~-----~~~I~~ViLvGGssriP~v~ 918 (2568)
.+. .. .+.-..| +.+ +|+ ++-+-+++.+. +..+|+..+.. ..+|..|+|+||+|.+|.+.
T Consensus 490 ~lgp~~~~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~ 567 (607)
T 1nbw_A 490 ALSPAVFAKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIP 567 (607)
T ss_dssp CCCGGGTTCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHH
T ss_pred CCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHH
Confidence 221 11 0111245 556 777 55555554443 45557776653 34579999999999999999
Q ss_pred HHHHHHhCCccc-------cccCCchhHHHhhHHHHHH
Q psy7639 919 SLLQNFFCGKSL-------NLSINPDEAVAYGAAVQAA 949 (2568)
Q Consensus 919 ~~l~~~f~~~~v-------~~~~npdeaVA~GAAl~aa 949 (2568)
++.++.|+.-.+ ...-.|..|+|.|.+++.+
T Consensus 568 elA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 568 QLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHHH
T ss_pred HHHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhhh
Confidence 999999965122 2245899999999988653
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.4e-08 Score=103.49 Aligned_cols=79 Identities=30% Similarity=0.680 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhcccccccCCC
Q psy7639 1902 RISARNNLEAYVFNVKQALD--NAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 1979 (2568)
Q Consensus 1902 ~~~~rn~le~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~ 1979 (2568)
++++||++|+|+|+++.+|. ++++++++++++.|...|+++++||+.+..++.++|+.++++|++++.||++++|+++
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~~ 81 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSA 81 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999997 6888999999999999999999999865556889999999999999999999999654
Q ss_pred C
Q psy7639 1980 G 1980 (2568)
Q Consensus 1980 ~ 1980 (2568)
+
T Consensus 82 ~ 82 (113)
T 1ud0_A 82 G 82 (113)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=114.71 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC--CC-eEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCC
Q psy7639 687 EEISSMVLTKMKETAEAYLGHS--VR-DAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGE 762 (2568)
Q Consensus 687 eev~a~iL~~L~~~ae~~~~~~--~~-~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~ 762 (2568)
=+....+++|+... .++.. -. .++||.|.......|++|.+.+ +.+|+..+.++.+|.||+++++..
T Consensus 92 wd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~------ 162 (498)
T 3qb0_A 92 WDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP------ 162 (498)
T ss_dssp HHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS------
T ss_pred HHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCC------
Confidence 34555666665532 23322 22 5899999999999999999875 789999999999999999988752
Q ss_pred ceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHH
Q psy7639 763 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 814 (2568)
Q Consensus 763 ~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~ 814 (2568)
+-||+|+|+|+++++.+. +|. -+........+||+++|+.|.++|..
T Consensus 163 -tglVVDiG~g~T~vvPI~--~G~--~l~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 163 -NCLVVDIGHDTCSVSPIV--DGM--TLSKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp -SEEEEEECSSCEEEEEEE--TTE--ECGGGCEEESCSHHHHHHHHHHHTTT
T ss_pred -eEEEEEcCCCcEEEEEEe--CCE--EccccceeccccHHHHHHHHHHHHHh
Confidence 359999999999999885 452 22212223579999999999988864
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=4e-05 Score=104.31 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHhCCCCCe-----EEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccC
Q psy7639 686 PEEISSMVLTKMKETA-EAYLGHSVRD-----AVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKN 758 (2568)
Q Consensus 686 peev~a~iL~~L~~~a-e~~~~~~~~~-----~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~ 758 (2568)
..+....+ ..|.+++ ...|+....+ +++|.|..|+...|+.|.+.+ +.-|+..+.++.++.+|++++|..
T Consensus 170 ~~~~wdd~-e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~-- 246 (593)
T 4fo0_A 170 LTAVLADI-EVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS-- 246 (593)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS--
T ss_pred hhcCHHHH-HHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC--
Confidence 34444443 3344443 4567765544 999999999999999887765 677999999999999999988753
Q ss_pred CCCCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHH
Q psy7639 759 LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 814 (2568)
Q Consensus 759 ~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~ 814 (2568)
+-+|+|+|+++|.|+-+. +|.. +....-...+||.++++.|.+.|..
T Consensus 247 -----tglVVDiG~~~T~v~PV~--dG~~--l~~~~~rl~~GG~~lt~~L~~lL~~ 293 (593)
T 4fo0_A 247 -----STCIVDVGDQKTSVCCVE--DGVS--HRNTRLCLAYGGSDVSRCFYWLMQR 293 (593)
T ss_dssp -----EEEEEEECSSCEEEEEEE--SSCB--CGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred -----ceEEEEeCCCceeeeeeE--CCEE--ehhheEEecccHHHHHHHHHHHHHh
Confidence 579999999999887664 5521 2222233579999999988877754
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=99.73 Aligned_cols=118 Identities=18% Similarity=0.275 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHhCCCCCe-----EEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccc
Q psy7639 113 PEEISSMVLTKMKETA-EAYLGHSVRD-----AVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKN 185 (2568)
Q Consensus 113 peel~a~~L~~l~~~a-e~~l~~~~~~-----~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~ 185 (2568)
..+.... +..|++++ ...|+....+ +++|.|..|+...|+.|.+-+ +.-|+..+.++.++.+|++++|..
T Consensus 170 ~~~~wdd-~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~-- 246 (593)
T 4fo0_A 170 LTAVLAD-IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS-- 246 (593)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS--
T ss_pred hhcCHHH-HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC--
Confidence 3444333 33444444 3467765544 999999999999999998765 566999999999999999988754
Q ss_pred cCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHH
Q psy7639 186 LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (2568)
Q Consensus 186 ~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~ 242 (2568)
+-+|+|+|+++|.++-|. +|.. +....-...+||.++++.|.++|..+
T Consensus 247 -----tglVVDiG~~~T~v~PV~--dG~~--l~~~~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 247 -----STCIVDVGDQKTSVCCVE--DGVS--HRNTRLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp -----EEEEEEECSSCEEEEEEE--SSCB--CGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred -----ceEEEEeCCCceeeeeeE--CCEE--ehhheEEecccHHHHHHHHHHHHHhc
Confidence 569999999999998774 3421 11112225689999999888877543
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0012 Score=80.09 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=98.3
Q ss_pred eEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKR 1614 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~ 1614 (2568)
...+++|++|.+.+...-.+ ... .|+|+||+++-+..++ +|.+.+.. .......|+-.|-+.+++.|
T Consensus 76 ~~~~v~Ei~ah~~ga~~~~~--~~~--~vidiGGqd~k~i~~~--~g~v~~~~-mn~~ca~GtG~~le~~a~~l------ 142 (270)
T 1hux_A 76 ADKQMSELSCHAMGASFIWP--NVH--TVIDIGGQDVKVIHVE--NGTMTNFQ-MNDKCAAGTGRFLDVMANIL------ 142 (270)
T ss_dssp CSEEECHHHHHHHHHHHHCT--TCC--EEEEEETTEEEEEEEE--TTEEEEEE-EESSCCTTSHHHHHHHHHHH------
T ss_pred CCCCcccHHHHHHHHHHhCC--CCC--EEEEECCCceEEEEEe--CCceeeec-cccccchhhHHHHHHHHHHh------
Confidence 34579999998855322221 112 5899999999888885 78554443 22223334433444444432
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcceeeecCHHHH----------HHHHhHHHHHHHHHH
Q psy7639 1615 KYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARF----------EELCSDLFRSTLQPV 1684 (2568)
Q Consensus 1615 ~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~f----------e~l~~pli~~i~~~i 1684 (2568)
+.+.. .+ -+.+.+++.. ...... ...+.+.++ ++++..+++.+...+
T Consensus 143 --g~~~~----el---~~la~~~~~p------------~~~~~~--c~vfa~s~v~~l~~~g~~~~di~~av~e~Va~~i 199 (270)
T 1hux_A 143 --EVKVS----DL---AELGAKSTKR------------VAISST--CTVFAESEVISQLSKGTDKIDIIAGIHRSVASRV 199 (270)
T ss_dssp --TCCTT----TH---HHHHTTCCSC------------CCCCCC--SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCCHH----HH---HHHHhhCCCC------------CCcccc--cchhHhHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 33321 11 1111111111 010000 001122222 444444555555444
Q ss_pred HHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHHh
Q psy7639 1685 EKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748 (2568)
Q Consensus 1685 ~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l~ 1748 (2568)
.+.++..++ .+.|+++||.+++|.+++.+.+.+ +.++..+.+|..+.|+|||++|....
T Consensus 200 ~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~~ 258 (270)
T 1hux_A 200 IGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKKA 258 (270)
T ss_dssp HHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHhh
Confidence 455554322 256999999999999999999999 56677777788899999999997643
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=87.09 Aligned_cols=127 Identities=17% Similarity=0.316 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCCHHHHHHHHHHH-HHcCCCeeeecchhHHHHHHhccccCCCCCceEEEEEeCCceeEEEEEEEcCCcEE
Q psy7639 710 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 788 (2568)
Q Consensus 710 ~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~l~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~ 788 (2568)
..+++|.|..++...|+.|.+.+ +..|+..+.++.+|.||+++++. ..+-||+|+|+|+++++.+. +| +
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl------~ttGLVVDiG~g~T~VvPV~--eG--~ 291 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI------STSTCVVNIGAAETRIACVD--EG--T 291 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC------SSCEEEEEECSSCEEEEEEE--TT--E
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC------CCceEEEcCCCceEEEEEEe--CC--E
Confidence 46999999999999999999887 56999999999999999998874 24579999999999999874 45 1
Q ss_pred EEEeeccCCCCccchHHHHHHHHHHHHHHhhhc-cCCCCCHHHHHHHHHHHHHHHHhcCCCCcce
Q psy7639 789 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEAS 852 (2568)
Q Consensus 789 ~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~-~~~~~~~~~~~~L~~~~E~aK~~LS~~~~~~ 852 (2568)
-+........+||+++++.|.++|... .+. .+...+... =+..++.+|+.+..-....
T Consensus 292 vl~~ai~rL~iGG~dLT~yL~kLL~~r---gypy~~~~f~t~~---e~eiVrdIKEk~CyVs~~D 350 (655)
T 4am6_A 292 VLEHSAITLDYGGDDITRLFALFLLQS---DFPLQDWKIDSKH---GWLLAERLKKNFTTFQDAD 350 (655)
T ss_dssp ECGGGCEEESCCHHHHHHHHHHHHHHT---TCSCCSCCTTSHH---HHHHHHHHHHHHCCCCGGG
T ss_pred EEhhheeeecchHHHHHHHHHHHHHHc---CCCccccCCCCcc---hHHHHHHHHHheEEEcccc
Confidence 222222235799999999998887653 110 011111111 1345778888887664333
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.001 Score=87.16 Aligned_cols=123 Identities=16% Similarity=0.305 Sum_probs=88.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEE
Q psy7639 137 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 215 (2568)
Q Consensus 137 ~~~VITVPa~f~~~qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~ 215 (2568)
..++||.|+.++...|+.|.+.+ +..|+..+.++.+|.||+++++. ..+-||+|+|+|+|+++.+- .|.
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl------~ttGLVVDiG~g~T~VvPV~--eG~-- 291 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI------STSTCVVNIGAAETRIACVD--EGT-- 291 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC------SSCEEEEEECSSCEEEEEEE--TTE--
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC------CCceEEEcCCCceEEEEEEe--CCE--
Confidence 36999999999999999999988 56899999999999999988864 23579999999999999884 351
Q ss_pred EEEeecccccccccchHHHHHHHHHHHHHhhhc-ccCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy7639 216 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSS 275 (2568)
Q Consensus 216 ~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~-~~~~~~~~~~~~L~~~aE~aK~~LS~~ 275 (2568)
-+........+||.++|+.|.++|.++- |. .+...+... =+..++.+|+.+..-
T Consensus 292 vl~~ai~rL~iGG~dLT~yL~kLL~~rg---ypy~~~~f~t~~---e~eiVrdIKEk~CyV 346 (655)
T 4am6_A 292 VLEHSAITLDYGGDDITRLFALFLLQSD---FPLQDWKIDSKH---GWLLAERLKKNFTTF 346 (655)
T ss_dssp ECGGGCEEESCCHHHHHHHHHHHHHHTT---CSCCSCCTTSHH---HHHHHHHHHHHHCCC
T ss_pred EEhhheeeecchHHHHHHHHHHHHHHcC---CCccccCCCCcc---hHHHHHHHHHheEEE
Confidence 1212112257999999999988876541 10 011111111 124577888887665
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0036 Score=75.89 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=54.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHH
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~l 951 (2568)
++++..+++.+...+.+.++..++ .+.|+++||.++.|.+++.+.+.+ +.++..+.+++.+.|+|||++|...
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHh
Confidence 444555555555555455543321 377999999999999999999999 5667777788889999999999764
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.037 Score=68.64 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=50.9
Q ss_pred HHHHhHHHHHHHHHHHHHH----HHcCCCCccccEEEEecC-ccCChhHHHHHHhhhc-----CCcccccCCchhhhhcc
Q psy7639 1670 EELCSDLFRSTLQPVEKAL----QDAKLDKSAIHDVVLVGG-STRIPKVQSLLQNFFC-----GKSLNLSINPDEAVAYG 1739 (2568)
Q Consensus 1670 e~l~~pli~~i~~~i~~~L----~~a~~~~~~Id~ViLVGG-ssr~P~V~~~I~~~f~-----~~~v~~~~nP~eAVA~G 1739 (2568)
|+++.-++.-+..-|.... +..++ +.|+++|| .+..|.+++.|++.++ +.++.++.+|..+-|+|
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~A~~~~i-----~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNENI-----DRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 4555555555544443332 33343 34999999 9999999999999973 45777888999999999
Q ss_pred HHHHH
Q psy7639 1740 AAVQA 1744 (2568)
Q Consensus 1740 Aai~a 1744 (2568)
||+.+
T Consensus 354 AaL~~ 358 (360)
T 2i7n_A 354 ALLEL 358 (360)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.073 Score=64.34 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=52.1
Q ss_pred cCHHHHH-HHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecC-ccCChhHHHHHHhhh--cCCcccccCCchhhhhcc
Q psy7639 1664 ISRARFE-ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGG-STRIPKVQSLLQNFF--CGKSLNLSINPDEAVAYG 1739 (2568)
Q Consensus 1664 itr~~fe-~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGG-ssr~P~V~~~I~~~f--~~~~v~~~~nP~eAVA~G 1739 (2568)
.+++++- .++.-+.+++..+.....+..+ ++.|+++|| .+..|.+++.+.+.+ .+.++.++.+|..+.|+|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 3444433 3333344444333333333433 445999999 899999999999985 467788899999999999
Q ss_pred HHHHH
Q psy7639 1740 AAVQA 1744 (2568)
Q Consensus 1740 Aai~a 1744 (2568)
||+++
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99863
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.29 Score=59.08 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=41.5
Q ss_pred cCeEEEEcC-CCCcHHHHHHHHHHh--CCccccccCCchhHHHhhHHHHH
Q psy7639 902 IHDVVLVGG-STRIPKVQSLLQNFF--CGKSLNLSINPDEAVAYGAAVQA 948 (2568)
Q Consensus 902 I~~ViLvGG-ssriP~v~~~l~~~f--~~~~v~~~~npdeaVA~GAAl~a 948 (2568)
++.|+++|| .+..|.+++.+++.+ .+.++..+.+|..+.|.|||+.+
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 557999999 899999999999974 56778888999999999999864
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.2 Score=62.12 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=51.7
Q ss_pred HHHHHHHHHhHHHHHHHHH----HHccCCccCcCeEEEEcC-CCCcHHHHHHHHHHh-----CCccccccCCchhHHHhh
Q psy7639 874 EELCSDLFRSTLQPVEKAL----QDAKLDKSAIHDVVLVGG-STRIPKVQSLLQNFF-----CGKSLNLSINPDEAVAYG 943 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L----~~a~~~~~~I~~ViLvGG-ssriP~v~~~l~~~f-----~~~~v~~~~npdeaVA~G 943 (2568)
|+++.-++.-+.+-|-... +..+ ++.|+++|| .+..|.+++.|++.+ ++.++..+.+|..+-|+|
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 4555555555554444332 2333 456999999 899999999999986 356777788999999999
Q ss_pred HHHHH
Q psy7639 944 AAVQA 948 (2568)
Q Consensus 944 AAl~a 948 (2568)
||+.+
T Consensus 354 AaL~~ 358 (360)
T 2i7n_A 354 ALLEL 358 (360)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99975
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.22 Score=66.61 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=63.9
Q ss_pred eecHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHH
Q psy7639 294 KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 373 (2568)
Q Consensus 294 ~itR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~ 373 (2568)
.-+|.++-.+++-+++.+.-.++..++...-....++.|.++||++++|.+.+.+.+.| +.++..+ ...|+.|+|||+
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~ 485 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAM 485 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHH
Confidence 34788875555666666655555544432212235889999999999999999999999 6777654 567899999999
Q ss_pred HHHHHcCCC
Q psy7639 374 QAAILSGDQ 382 (2568)
Q Consensus 374 ~aa~ls~~~ 382 (2568)
.|+.-.|.+
T Consensus 486 lA~~a~G~~ 494 (554)
T 3l0q_A 486 MGTVAAGVF 494 (554)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHcCCc
Confidence 999876654
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.43 Score=58.77 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeC
Q psy7639 1488 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLG 1567 (2568)
Q Consensus 1488 ~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~G 1567 (2568)
..|+.+++.++. ++.+...+|-|--.---..+..++..+-+..|+++..|--|.+|...+.+...........+|+|+|
T Consensus 68 ~~L~~f~~~~~~-~~v~~i~~vATsA~R~A~N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIG 146 (315)
T 1t6c_A 68 QVLKEYKKLIDE-FKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQG 146 (315)
T ss_dssp HHHHHHHHHHHH-TTCSEEEEEECHHHHTSTTHHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEE
T ss_pred HHHHHHHHHHHH-CCCCeEEEEEcHHHHcCcCHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeC
Confidence 455556666644 3433223332221111234556777777789999987777888876655543322234579999999
Q ss_pred CcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHH
Q psy7639 1568 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRL 1604 (2568)
Q Consensus 1568 GGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l 1604 (2568)
||++.+++.+ ++. +..... -.+|+..+.+.+
T Consensus 147 GGStEl~~~~--~~~---~~~~~S-l~~G~v~l~e~~ 177 (315)
T 1t6c_A 147 GGSTEYVFGK--GYK---VREVIS-LPIGIVNLTETF 177 (315)
T ss_dssp TTEEEEEEEE--TTE---EEEEEE-ECCCHHHHHHHH
T ss_pred CCcEEEEEEe--CCc---eeeEEE-EeccHHHHHHHh
Confidence 9999999987 552 222222 348988877665
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.27 Score=65.82 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=62.7
Q ss_pred ecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHH
Q psy7639 867 KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 946 (2568)
Q Consensus 867 ~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl 946 (2568)
.-+|.++-.++.-+++.+.-.++.+++...-....++.|.++||.++.|.+.+++.+.| +.++..+ ...|+.|+|||+
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~ 485 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAM 485 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHH
Confidence 34677775545566666655555555433222335889999999999999999999999 5666554 457899999999
Q ss_pred HHHHHcCC
Q psy7639 947 QAAILSGD 954 (2568)
Q Consensus 947 ~aa~ls~~ 954 (2568)
.|+.-.|.
T Consensus 486 lA~~a~G~ 493 (554)
T 3l0q_A 486 MGTVAAGV 493 (554)
T ss_dssp HHHHHTTS
T ss_pred HHHHHcCC
Confidence 99986653
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=91.63 E-value=6.2 Score=48.47 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=52.0
Q ss_pred eecHHHHHHHHHHHHHHHHHHHhCCCCCeEE-EEecCCCC-HHHHHHHHHHHHHcCCcEEEEecchhHHHHhhccccccC
Q psy7639 110 TFAPEEISSMVLTKMKETAEAYLGHSVRDAV-ITVPAYFN-DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK 187 (2568)
Q Consensus 110 ~~speel~a~~L~~l~~~ae~~l~~~~~~~V-ITVPa~f~-~~qr~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~ 187 (2568)
.++++- +...+..|+...+..-...+.++. ++.-|.=. .+....+..+-+..|+++-.+=.|-+|.-.+.+....+.
T Consensus 49 ~ls~ea-i~r~~~~L~~f~~~~~~~~v~~v~~vATsA~R~A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~ 127 (315)
T 3mdq_A 49 FITEEA-MDRALDTLKKFRVILDEHAVVHVIATGTSAVRSGSNKQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVP 127 (315)
T ss_dssp CCCHHH-HHHHHHHHHHHHHHHHHTTCCEEEEEECHHHHHCTTHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSC
T ss_pred CcCHHH-HHHHHHHHHHHHHHHHHcCCCEEEEEeeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCC
Confidence 345443 344455554444433233344432 22222111 122333444455679987444455565544445443332
Q ss_pred -CCceEEEEEeCCcceEEEEee
Q psy7639 188 -GERNVLIFDLGGGTFDVSILS 208 (2568)
Q Consensus 188 -~~~~vlV~D~GggT~Dvsv~~ 208 (2568)
.+...+|+|+|||+|.+++++
T Consensus 128 ~~~~~~lviDIGGGStEl~~~~ 149 (315)
T 3mdq_A 128 MEDHISLAMDIGGGSVEFIIGN 149 (315)
T ss_dssp CTTCCEEEEEECSSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCceEEEEEE
Confidence 245799999999999999986
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.26 Score=65.62 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=60.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcC
Q psy7639 301 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 380 (2568)
Q Consensus 301 e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~ 380 (2568)
..+++-+++.+.-.++..++..+.....++.|.++||++++|.+.+.+.+.| +.++.. ..+.|+.|+|||+.|+.-.|
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYV-IDTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEE-CCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEe-cCCCCchHHHHHHHHHHHhC
Confidence 4455556666666666677766554455789999999999999999999999 677765 46688999999999987544
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=91.41 E-value=0.2 Score=65.94 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=56.7
Q ss_pred cHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHH
Q psy7639 296 SRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 375 (2568)
Q Consensus 296 tR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~a 375 (2568)
+|.++ ++-+++.+.-.++..++........++.|.++||+++.+.+.+.+.+.+ +.++..+..++.+.|+|||+.|
T Consensus 357 ~~~~~---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA 432 (484)
T 2itm_A 357 GPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHH
Confidence 45554 4444444444444444332212234788999999999999999999999 7888776555556999999999
Q ss_pred HHHcCC
Q psy7639 376 AILSGD 381 (2568)
Q Consensus 376 a~ls~~ 381 (2568)
+.-.|.
T Consensus 433 ~~~~g~ 438 (484)
T 2itm_A 433 QIAANP 438 (484)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 876654
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.3 Score=64.45 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 303 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381 (2568)
Q Consensus 303 l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~ 381 (2568)
+++-+++.+.-.++..++...... .++.|.++||+++.+.+.+.+.+.+ +.++..+ .+.|+.|+|||+.|+.-.|.
T Consensus 369 l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g~ 444 (497)
T 2zf5_O 369 LARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVDY 444 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhCc
Confidence 344555555555566665544333 5789999999999999999999999 6777654 45669999999999877664
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=91.22 E-value=0.26 Score=64.81 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=55.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
++++-+++.+.-.++.+++........++.|.++||.++.|.+.+++.+.| +.++..+..++.+.|+|||+.|+.-.|
T Consensus 360 ~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA~~~~g 437 (484)
T 2itm_A 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHHHHHcC
Confidence 344455555544444444433222235788999999999999999999999 577776655555699999999987665
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.33 Score=64.24 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=59.3
Q ss_pred cHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcc-cccCCchhHHHhhHHHH
Q psy7639 296 SRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL-NLSINPDEAVAYGAAVQ 374 (2568)
Q Consensus 296 tR~efe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v-~~~~npdeaVA~GAa~~ 374 (2568)
+|.+| ++-+++.+.-.++..++.... .. ++.|.++||+++.|.+.+.+.+.+ +.++ .. ..+.|+.|+|||+.
T Consensus 375 ~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~~e~~alGaA~l 447 (511)
T 3hz6_A 375 TRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVK-PDAHLHPLRGLAAL 447 (511)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEEC-CCGGGHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEe-cCCCCchHHHHHHH
Confidence 45554 444555555555555544332 33 789999999999999999999999 6777 54 46899999999999
Q ss_pred HHHHcCCC
Q psy7639 375 AAILSGDQ 382 (2568)
Q Consensus 375 aa~ls~~~ 382 (2568)
|+.-.|.+
T Consensus 448 A~~a~G~~ 455 (511)
T 3hz6_A 448 AAVELEWS 455 (511)
T ss_dssp HHHHTTSC
T ss_pred HHHHhCCc
Confidence 99877654
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.36 Score=64.31 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=60.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
..+++-+++.+.-.++..++..+.....++.|.++||.++.|.+.+++.+.| +.++.. ..+.|+.|+|||+.|+.-.|
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYV-IDTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEE-CCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEe-cCCCCchHHHHHHHHHHHhC
Confidence 5566666666666666777765554456789999999999999999999999 566654 35688999999999987544
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=90.57 E-value=0.41 Score=63.28 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccc-cccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL-NLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v-~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.+++-+++.+.-.++.+++...- .. ++.|.++||.++.|.+.+++.+.| +.++ .. ..+.|+.|+|||+.|+.-.|
T Consensus 378 ~l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~~e~~alGaA~lA~~a~G 453 (511)
T 3hz6_A 378 QILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVK-PDAHLHPLRGLAALAAVELE 453 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEEC-CCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEe-cCCCCchHHHHHHHHHHHhC
Confidence 34555555555555555554433 33 889999999999999999999999 5666 44 46899999999999988666
Q ss_pred C
Q psy7639 954 D 954 (2568)
Q Consensus 954 ~ 954 (2568)
.
T Consensus 454 ~ 454 (511)
T 3hz6_A 454 W 454 (511)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=0.41 Score=63.24 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=57.1
Q ss_pred cHHHHHHHHhhhhhhhHHHHHH---HHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHH
Q psy7639 296 SRARFEELCSDLFRSTLQPVEK---ALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 372 (2568)
Q Consensus 296 tR~efe~l~~~l~~~i~~~i~~---~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa 372 (2568)
+|.+| ++-+++.+.-.++. .|++.+ ..++.|.++||+++.|.+.+.+.+.| +.++.. ..+.|+.|+|||
T Consensus 364 ~~~~l---~RAvlEgia~~~r~~~~~l~~~g---~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~-~~~~e~~alGaA 435 (504)
T 3ll3_A 364 QKPEM---ARAVIEGIIFNLYDAASNLIKNT---KKPVAINATGGFLKSDFVRQLCANIF-NVPIVT-MKEQQSGTLAAM 435 (504)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTS---CCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEE-ESCSCHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEe-cCCCCchhHHHH
Confidence 45554 34444444444343 344443 25889999999999999999999999 677765 356789999999
Q ss_pred HHHHHHcCCC
Q psy7639 373 VQAAILSGDQ 382 (2568)
Q Consensus 373 ~~aa~ls~~~ 382 (2568)
+.|+.-.|.+
T Consensus 436 ~lA~~a~G~~ 445 (504)
T 3ll3_A 436 FLARQALGLN 445 (504)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHcCcc
Confidence 9999876653
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.41 Score=63.19 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=57.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 874 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 874 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.++++-+++.+.-.++.+++...-.. .++.|.++||.++.|.+.+++.+.| +.++..+ .+.|+.|+|||+.|+.-.|
T Consensus 367 ~~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 367 EHLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 34455556666555666665544333 6789999999999999999999999 5666654 4566999999999987665
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.34 Score=64.12 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=53.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.+++-+++.+.-.++.+++...-....++.|.++||.++.|.+.+++.+.| +.++... .+.|+.|+|||+.|+.-.+
T Consensus 398 ~l~RAvlEgia~~~r~~l~~l~~~g~~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 474 (515)
T 3i8b_A 398 NLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAARQAAWVLS 474 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHHHHHHHHcC
Confidence 344444554444444433322112234789999999999999999999999 5666543 5677999999999987555
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.6 Score=57.50 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=50.1
Q ss_pred HHHHHHHHH-HHcCCcEEEEecchhHHHHhhccccccCCCceEEEEEeCCcceEEEEeeecCCcEEEEEeeccccccccc
Q psy7639 151 QRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 229 (2568)
Q Consensus 151 qr~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~ 229 (2568)
.++.+.+.+ +..|+++-.+=.|.+|...+.+....+......+|+|+|||||.+++++ ++.+.. ..+..+|+.
T Consensus 98 N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~~~~~----~~Sl~~G~v 171 (315)
T 1t6c_A 98 NAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GYKVRE----VISLPIGIV 171 (315)
T ss_dssp THHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TTEEEE----EEEECCCHH
T ss_pred CHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CCceee----EEEEeccHH
Confidence 334444444 4679997666667777655555544333345799999999999999985 342211 122568887
Q ss_pred chHHHH
Q psy7639 230 DFDNRL 235 (2568)
Q Consensus 230 ~~D~~l 235 (2568)
.+.+.+
T Consensus 172 ~l~e~~ 177 (315)
T 1t6c_A 172 NLTETF 177 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=90.01 E-value=0.33 Score=64.23 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=55.7
Q ss_pred cHHHHHHHHhhhhhhhHHHHH---HHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHH
Q psy7639 296 SRARFEELCSDLFRSTLQPVE---KALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 372 (2568)
Q Consensus 296 tR~efe~l~~~l~~~i~~~i~---~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa 372 (2568)
+|.++ ++-+++.+.-.++ +.|++.+. .++.|.++||+++.|.+.+.+.+.| +.++.. ..+.|+.|+|||
T Consensus 395 ~~~~l---~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~-~~~~e~~alGAA 466 (515)
T 3i8b_A 395 TRENL---ARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSIL-GMDVTR-PATDEYVAIGAA 466 (515)
T ss_dssp SHHHH---HHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEE-ECCCCHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHh-CCceEe-cCCcccHHHHHH
Confidence 55554 3334444433333 34445443 4789999999999999999999999 677765 356789999999
Q ss_pred HHHHHHcCC
Q psy7639 373 VQAAILSGD 381 (2568)
Q Consensus 373 ~~aa~ls~~ 381 (2568)
+.|+.-.+.
T Consensus 467 ~lA~~a~G~ 475 (515)
T 3i8b_A 467 RQAAWVLSG 475 (515)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHcCC
Confidence 999876554
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=0.54 Score=62.07 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=54.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.+++-+++.+.-.++.+++...-....++.|.++||.++.|.+.+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 367 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 443 (504)
T 3ll3_A 367 EMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAMFLARQALG 443 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHHHHHHHHcC
Confidence 334445555544444444432211235889999999999999999999999 5666553 5677999999999987665
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=0.44 Score=62.89 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||+++.+.+.+.+.+.| +.++.. ..+.|+.|+|||+.|+.-.|.+
T Consensus 404 ~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~-~~~~e~~alGaA~la~~a~G~~ 456 (501)
T 3g25_A 404 DVQSLRVDGGAVKNNFIMQFQADIV-NTSVER-PEIQETTALGAAFLAGLAVGFW 456 (501)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEE-ESCCCHHHHHHHHHHHHHTTSS
T ss_pred CCcEEEEecchhcCHHHHHHHHHHh-CCceEe-cCCCcchHHHHHHHHHHHhCcc
Confidence 4789999999999999999999999 677755 4577899999999999877654
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=88.95 E-value=0.42 Score=63.44 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=46.2
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||+++.|.+.+.+.+.| +.++..+ ...|+.|+|||+.|+.-.|.+
T Consensus 402 ~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~lA~~a~G~~ 454 (526)
T 3ezw_A 402 RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLAVGFW 454 (526)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999999 7787654 567899999999999887764
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.79 E-value=0.62 Score=61.40 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred cHHHHHHHHhhhhhhhHHHHHHHHHHcC-CCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHH
Q psy7639 296 SRARFEELCSDLFRSTLQPVEKALQDAK-LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQ 374 (2568)
Q Consensus 296 tR~efe~l~~~l~~~i~~~i~~~l~~a~-~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~ 374 (2568)
+|.++ ++-+++.+.-.++..++... .....++.|.++||+++.+.+.+.+.+.+ +.++..+ .+.|+.|+|||+.
T Consensus 368 ~~~~~---~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~l 442 (495)
T 2dpn_A 368 SRAHL---ARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALM 442 (495)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHH
Confidence 45543 33444444444444444321 11234678999999999999999999999 6777654 5667999999999
Q ss_pred HHHHcCC
Q psy7639 375 AAILSGD 381 (2568)
Q Consensus 375 aa~ls~~ 381 (2568)
|+.-.|.
T Consensus 443 a~~a~G~ 449 (495)
T 2dpn_A 443 AGVGAGA 449 (495)
T ss_dssp HHHHHTS
T ss_pred HHhhcCc
Confidence 9876553
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=88.71 E-value=0.38 Score=63.54 Aligned_cols=61 Identities=26% Similarity=0.259 Sum_probs=48.4
Q ss_pred HHHHHcCCCCCCCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 317 KALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 317 ~~l~~a~~~~~~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
+.|++.+. .++.|.++||+++.|.+.+.+.+.| +.++..+. ..|+.|+|||+.|+.-.|.+
T Consensus 392 ~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~a~G~~ 452 (508)
T 3ifr_A 392 AVLDDIGH---APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLA-NPLGSAVGAAWVAAIGGGDD 452 (508)
T ss_dssp HHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEE-CCSTHHHHHHHHHHHHTCSS
T ss_pred HHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecC-CCCchHHHHHHHHHHHhCCC
Confidence 34444453 4789999999999999999999999 67776654 35688999999999876653
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=88.58 E-value=0.46 Score=62.75 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||+++.+.+.+.+.+.+ +.++.. ..+.|+.|+|||+.|+.-.|.+
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~a~G~~ 455 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQR-AANLETTALGAAYLAGLAVGFW 455 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEE-CSSSCHHHHHHHHHHHHHTTSS
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEe-cCCCcchhHHHHHHHHHHhCcc
Confidence 4789999999999999999999999 677765 4677899999999999877654
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=88.30 E-value=0.6 Score=61.63 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHccC-CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
++++-+++.+.-.++.+++...- ....++.|.++||.++.|.+.+++.+.| +.++.. ..+.|+.|+|||+.|+.-.|
T Consensus 377 ~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~-~~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 377 HFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIV-NTSVER-PEIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHH-TSEEEE-ESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHh-CCceEe-cCCCcchHHHHHHHHHHHhC
Confidence 34444555554444444433211 1224789999999999999999999999 566654 35778999999999997666
Q ss_pred C
Q psy7639 954 D 954 (2568)
Q Consensus 954 ~ 954 (2568)
.
T Consensus 455 ~ 455 (501)
T 3g25_A 455 F 455 (501)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=88.03 E-value=0.51 Score=62.36 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=43.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.++.|.++||.++.|.+.+++.+.| +.++.... ..|+.|+|||+.|+.-.|
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLA-NPLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEE-CCSTHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecC-CCCchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 56666553 356889999999987665
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.47 Score=62.89 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=43.2
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 954 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~~ 954 (2568)
.++.|.++||.++.|.+.+++.+.| +.++..+ .+.|+.|+|||+.|+.-.|.
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G~ 476 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAGV 476 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcCC
Confidence 5788999999999999999999999 5666543 56789999999999987664
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=88.02 E-value=0.53 Score=62.49 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=44.7
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 954 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~~ 954 (2568)
.++.|.++||+++.|.+.+++.+.| +.++..+ ...|+.|+|||+.|+.-.|.
T Consensus 402 ~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~lA~~a~G~ 453 (526)
T 3ezw_A 402 RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLAVGF 453 (526)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999 5677554 56689999999999987664
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.45 Score=63.02 Aligned_cols=53 Identities=17% Similarity=0.046 Sum_probs=44.5
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQ 382 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~~ 382 (2568)
.++.|.++||++++|.+.+.+.+.+ +.++.. ..+.|+.|+|||+.|+.-.|.+
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~-~~~~e~~alGAA~lA~~a~G~~ 477 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDR-PVILETTALGVAWLAGSRAGVW 477 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEE-ESCCCHHHHHHHHHHHHHHTSS
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEe-cCCCccHHHHHHHHHHHHcCCc
Confidence 4788999999999999999999999 677765 3567899999999999877654
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.83 E-value=0.73 Score=60.70 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=54.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHccC-CccCcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 875 ELCSDLFRSTLQPVEKALQDAKL-DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 875 ~l~~~l~~~i~~~i~~~L~~a~~-~~~~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
++++-+++.+.-.++.+++...- ....++.|.++||.++.+.+.+++.+.+ +.++... .+.|+.|+|||+.|+.-.|
T Consensus 371 ~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 371 HLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhcC
Confidence 33444455554444444443321 1234678999999999999999999999 5666544 5567999999999987655
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=87.44 E-value=0.64 Score=61.41 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=44.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 954 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~~ 954 (2568)
.++.|.++||.++.|.+.+++.+.| +.++.. ..+.|+.|+|||+.|+.-.|.
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~a~G~ 454 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQR-AANLETTALGAAYLAGLAVGF 454 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEE-CSSSCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEe-cCCCcchhHHHHHHHHHHhCc
Confidence 4789999999999999999999999 566654 457789999999999976653
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=86.55 E-value=54 Score=40.37 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhc--CCcccccCC---chhhhhccHHHHHHHHhC
Q psy7639 1676 LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC--GKSLNLSIN---PDEAVAYGAAVQAAILSG 1749 (2568)
Q Consensus 1676 li~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~--~~~v~~~~n---P~eAVA~GAai~a~~l~~ 1749 (2568)
+.+.+.+.+.++.+..+ ++.|+|+||......+++.+.+.+. +-++..+.. -|.++++|+|.+.....+
T Consensus 228 l~~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~~ 301 (330)
T 2ivn_A 228 AFAALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAG 301 (330)
T ss_dssp HHHHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHhcC
Confidence 44555566666666544 4569999999999999999998873 234444432 277889998876554433
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=86.39 E-value=0.76 Score=60.69 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=43.9
Q ss_pred C-CeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 329 I-HDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381 (2568)
Q Consensus 329 i-~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~ 381 (2568)
+ +.|.++||+++.+.+.+.+.+.+ +.++..+ .+.|+.|+|||+.|+.-.|.
T Consensus 407 ~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G~ 458 (503)
T 2w40_A 407 MLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVKI 458 (503)
T ss_dssp CCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTTC
T ss_pred ccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhCc
Confidence 5 78999999999999999999999 6777653 56679999999999887664
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=86.02 E-value=0.72 Score=60.89 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=44.6
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 381 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~ls~~ 381 (2568)
.++.|.++||+++.+.+.+.+.+.+ +.++..+ .+.|+.|+|||+.|+.-.|.
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G~ 454 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVGF 454 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcCc
Confidence 3678999999999999999999999 6777653 56789999999999876664
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=42 Score=41.32 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHHHHHHhC--CccccccC---CchhHHHhhHHHHHHHHc
Q psy7639 882 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC--GKSLNLSI---NPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 882 ~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~l~~~f~--~~~v~~~~---npdeaVA~GAAl~aa~ls 952 (2568)
+.+.+.+.++.+.. .++.|+|+||.+....+++.|.+.+. +.++..+. -.|.++++|+|.+.....
T Consensus 230 ~~l~~~~~~~~~~~-----~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~ 300 (330)
T 2ivn_A 230 AALVEVTERAVAHT-----EKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKA 300 (330)
T ss_dssp HHHHHHHHHHHHHH-----CCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHhc
Confidence 33344444444443 36789999999999999999998762 23444433 347889999987665443
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=85.41 E-value=0.97 Score=59.67 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=42.7
Q ss_pred c-CeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 902 I-HDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 902 I-~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
+ +.|.++||.++.|.+.+++.+.+ +.++... .+.|+.|+|||+.|+.-.|
T Consensus 407 ~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 407 MLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp CCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred ccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 6 78999999999999999999999 5666544 5567999999999987665
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=85.37 E-value=0.99 Score=59.57 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=43.6
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 953 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~ 953 (2568)
.++.|.++||.++.+.+.+++.+.| +.++..+ .+.|+.|+|||+.|+.-.|
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcC
Confidence 3688999999999999999999999 5666544 5577999999999987665
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=85.34 E-value=22 Score=43.85 Aligned_cols=211 Identities=17% Similarity=0.261 Sum_probs=106.3
Q ss_pred CCcccEEEEc-cCCCCHHHHHHHHHHHHH---cCCceeEEechhhHHH-hhcccccCcCCcceEEEEeeCCeeeEEEEEE
Q psy7639 2076 HSVRDAVITV-PAYFNDAQRQATKDAGAI---AGLNVMRIVNEPTAAA-LAYGLDKNLKGERNVLIFDLGGGTFDVSILS 2150 (2568)
Q Consensus 2076 ~~v~~aVItV-Pa~f~~~qR~a~~~Aa~~---AGl~vl~linEptAaa-laYg~~~~~~~~~~vlv~DlGggt~dvsil~ 2150 (2568)
.++..+++|. |..|+.- |-.+.-|-.+ .+..+..+ |--.|=| .+|-.. ....+ -+|++| ||.+. ++.
T Consensus 72 ~did~Iav~~gPG~~t~l-rvg~~~ak~La~~~~~Pl~~v-~hl~aHa~sa~~~s-~~~~p-l~L~vs--Gg~t~--l~~ 143 (334)
T 3eno_A 72 HDIDLIGFSMGPGLAPSL-RVTATAARTISVLTGKPIIGV-NHPLGHIEIGRRVT-GAIDP-VMLYVS--GGNTQ--VIA 143 (334)
T ss_dssp GGCCEEEEECSSSCHHHH-HHHHHHHHHHHHHHTCCCEEE-CHHHHHHHHHHHHH-TCSSC-EEEEES--SSCEE--EEE
T ss_pred HHCCEEEEEcCCCCcchH-HHHHHHHHHHhhccCCCeEEe-ccHHHHHHHHHhcC-CCCCC-EEEEEE--CCCcE--EEE
Confidence 3566777776 8888743 4443333222 35655543 3222211 122111 11223 556666 44443 445
Q ss_pred EcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccCCcceeEEEEecccCC
Q psy7639 2151 IDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230 (2568)
Q Consensus 2151 ~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~~K~~LS~~~~~~~~i~~~~~~ 2230 (2568)
+.++ .++++++..|..+| +-||. +.+--|.... .-.+|...|...+. .+.++....+
T Consensus 144 ~~~~-~~~~lg~t~d~S~G-~~fD~---------vA~~LGl~y~----g~~~le~lA~~g~~--------~~~~~~~~~~ 200 (334)
T 3eno_A 144 HVNG-RYRVLGETLDIGIG-NMIDK---------FAREAGIPFP----GGPEIEKLAMKGTK--------LLDLPYSVKG 200 (334)
T ss_dssp ECSS-BEEEEEEBSSCCHH-HHHHH---------HHTTTTCCSC----HHHHHHTTGGGCCS--------CCCCCCCEET
T ss_pred EeCC-EEEEeccCCCccHH-HHHHH---------HHHHcCCCCC----CHHHHHHHHhcCCC--------CCCCceeccC
Confidence 6666 79999998887765 54554 3333333321 11123222222111 0111111112
Q ss_pred cceEEe-eC---------HHHHHHHhHH----HHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcC-
Q psy7639 2231 IDFYTK-IS---------RARFEELCSD----LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC- 2295 (2568)
Q Consensus 2231 ~d~~~~-it---------r~~fe~l~~~----l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~- 2295 (2568)
.+|+++ +. ....++++.. +.+.+.+.++++++..+ ++.|+|.||...=..+++.|.+.+.
T Consensus 201 ~~~sfsgl~~~v~~~l~~g~~~~diAasfq~~l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~ 275 (334)
T 3eno_A 201 MDTAFSGILTAALQYLKTGQAIEDISYSIQETAFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMARE 275 (334)
T ss_dssp TEECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHH
T ss_pred ceEchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHH
Confidence 233211 00 0112344433 33444445555555544 5789999999999999999988762
Q ss_pred -CCCC---CCCCCcchhHHhhHHHHHHHhhC
Q psy7639 2296 -GKSL---NLSINPDEAVAYGAAVQAAILSG 2322 (2568)
Q Consensus 2296 -~~~~---~~~~npdeava~GAa~~aa~ls~ 2322 (2568)
+.++ .....-|.++++|+|.......|
T Consensus 276 ~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 276 AGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred cCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 2222 22346789999999976655555
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=0.93 Score=59.65 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=40.0
Q ss_pred CCCeEEEcCCccchHHHHHHHHHHhCCCcccccCCchhHHHhhHHHHHHHH
Q psy7639 328 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378 (2568)
Q Consensus 328 ~i~~ViLvGG~sriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAa~~aa~l 378 (2568)
.++.|.++||+++++.+.+.+.+.+ +.++... . .|+.|.|||+.|..-
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~-~e~~alGaa~~A~~a 440 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMT 440 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-C-TTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecC-C-ccHhHHHHHHHHHHH
Confidence 3688999999999999999999999 6777644 3 699999997766543
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=83.43 E-value=1.3 Score=58.39 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=38.8
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHH
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
.++.|.++||.++.+.+.+++.+.| +.++... . .|+.|+|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~-~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-C-TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecC-C-ccHhHHHHHHHHHH
Confidence 4788999999999999999999999 5666543 2 68999999666654
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=83.40 E-value=23 Score=43.58 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=55.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHH----------------HHHHHHHHHHcCCceeEEechhhH
Q psy7639 2054 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----------------RQATKDAGAIAGLNVMRIVNEPTA 2117 (2568)
Q Consensus 2054 ~peei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~q----------------R~a~~~Aa~~AGl~vl~linEptA 2117 (2568)
+|+++...+...+++..+.. + .+..+.|++|...+... ++.+.+ ..|+.| .+.|+-.|
T Consensus 59 ~~~~~~~~i~~~i~~~~~~~-~-~~~gigi~~pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~---~~~~pV-~v~NDa~a 132 (327)
T 4db3_A 59 DYPLLLETIAGLVAKYDQEF-A-CEGKIGLGLPGMEDADDATVLTVNVPAAKGKPLRADLEA---KIGRSV-KIENDANC 132 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-T-SCCEEEEEESEEECTTTCCEEESSSGGGTTSCHHHHHHH---HHSSCC-EEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc-C-CccEEEEEeeccEeCCCCEEEcCCCccccCCCHHHHHHH---HHCCCE-EEecchhH
Confidence 57777777766666554433 2 35677888887665221 333333 348875 89999999
Q ss_pred HHhhcccccCcCCcceEEEEeeCCeeeEEEEE
Q psy7639 2118 AALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 2149 (2568)
Q Consensus 2118 aalaYg~~~~~~~~~~vlv~DlGggt~dvsil 2149 (2568)
||++-.........++++++-+|.| .=.+++
T Consensus 133 aalgE~~~g~~~~~~~~~~l~~GtG-iG~gii 163 (327)
T 4db3_A 133 FALSEAWDEELQDAPSVMGLILGTG-FGGGLI 163 (327)
T ss_dssp HHHHHHTSTTTTTCSEEEEEEESSS-EEEEEE
T ss_pred HHHHHHHhCCCCCCCcEEEEEeCcc-ceEEEE
Confidence 9997644322224567888888877 444444
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=83.06 E-value=15 Score=45.15 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=57.4
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCcccEEEEccCCCCHHH----------------HHHHHHHHHHcCCceeEEechhh
Q psy7639 2053 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----------------RQATKDAGAIAGLNVMRIVNEPT 2116 (2568)
Q Consensus 2053 ~~peei~a~iL~~lk~~ae~~~g~~v~~aVItVPa~f~~~q----------------R~a~~~Aa~~AGl~vl~linEpt 2116 (2568)
.+|+++...+...+++..+. .++..+.|++|...+... ++.+.+ ..|+.| .+.|+-.
T Consensus 35 ~~~~~~~~~i~~~i~~~~~~---~~i~gigi~~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~---~~~~pv-~v~NDa~ 107 (321)
T 3vgl_A 35 PTAEGIVDAICAAVAGASEG---HDVEAVGIGAAGYVDDKRATVLFAPNIDWRHEPLKDKVEQ---RVGLPV-VVENDAN 107 (321)
T ss_dssp SSHHHHHHHHHHHHHHHHTT---CCEEEEEEEESSEECTTSSCEEECSSSCCEEECHHHHHHH---HHCSCE-EEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh---cCceEEEEeccccEeCCCCEEEeCCCCCCcCCCHHHHHhh---hhCCCE-EEEehhh
Confidence 45777776666655554332 478888999998776431 233333 348875 7999999
Q ss_pred HHHhhcccccCcCCcceEEEEeeCCeeeEEEEEE
Q psy7639 2117 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILS 2150 (2568)
Q Consensus 2117 AaalaYg~~~~~~~~~~vlv~DlGggt~dvsil~ 2150 (2568)
|||++.-........++++++-+|.| .=..++.
T Consensus 108 aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 108 AAAWGEYRFGAGQGHDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred hHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEE
Confidence 99998533221123567888889887 4445443
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=82.03 E-value=38 Score=44.83 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=97.8
Q ss_pred ccceEEEEe-cCCCCHHHHHH--HHHHHHHcCCceEEEEechhHHHHHhhccccccCcceEEEEEeCCcceEEEEEEecC
Q psy7639 1504 SVRDAVITV-PAYFNDAQRQA--TKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDE 1580 (2568)
Q Consensus 1504 ~~~~~ViTV-Pa~f~~~qR~~--~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~ 1580 (2568)
++.-+++|. |.+|..-.--. -+--|...|++++. |+--.|-+++.......... +++-+.||++.+-.+. .
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p---~~l~vsGg~t~~~~~~--~ 145 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP---LTLYVSGGNTQVIAYV--S 145 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC---EEEEECSSCEEEEEEE--T
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC---cEEEEcCCCcEEEEEe--C
Confidence 466677777 87765432111 12233445666654 55555544433333322222 6777778888765554 5
Q ss_pred CcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhcccCCCCeeEEEEccccCCcce
Q psy7639 1581 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDF 1660 (2568)
Q Consensus 1581 g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~~Ls~~~~~~i~i~~~~~~~~~ 1660 (2568)
| .++++...-|. .-|+-||..- .. .|......+ . |-..|...... +.+|....+.+|
T Consensus 146 ~-~~~~lg~t~d~-s~G~~~D~~a-~~--------lgl~~~gg~-~---ie~lA~~g~~~--------~~~p~~~~~~~~ 202 (540)
T 3en9_A 146 K-KYRVFGETLDI-AVGNCLDQFA-RY--------VNLPHPGGP-Y---IEELARKGKKL--------VDLPYTVKGMDI 202 (540)
T ss_dssp T-EEEEEEEBSSS-CHHHHHHHHH-HH--------TTCCSSCHH-H---HHHHHHTCCCC--------CCCCCCEETTEE
T ss_pred C-ceEEEeeccch-HhHHHHHHHH-HH--------cCCCCCCHH-H---HHHHHHcCCcc--------CcCCCCCCCcce
Confidence 5 67888877654 4577777432 22 233322212 2 22223222211 112222223333
Q ss_pred eee-------------cCHHHHHHHHh-HHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhc
Q psy7639 1661 YTK-------------ISRARFEELCS-DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 1722 (2568)
Q Consensus 1661 ~~~-------------itr~~fe~l~~-pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~ 1722 (2568)
+++ .+.+++-.-++ -+++.+.+.+.++++..+ ++.|+|+||-+....+++.+.+...
T Consensus 203 sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~~ 273 (540)
T 3en9_A 203 AFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMCE 273 (540)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHHH
Confidence 221 11222222222 245556666777777766 4569999999999999999999874
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=82.01 E-value=2.1 Score=52.67 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCceEEEEechhHHHHHhhcccccc-CcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCCh
Q psy7639 1519 AQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597 (2568)
Q Consensus 1519 ~qR~~~~~Aa~~AGL~v~~li~EPtAAal~y~~~~~~~-~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG 1597 (2568)
.+..++..+-+..|+++..|=-|-+|...+.+...... .+...+|+|+|||++.+++.+ ++.. ..... -.+|.
T Consensus 90 N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~---~~~~S-l~lG~ 163 (315)
T 3mdq_A 90 NKQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN--KNEI---LWKQS-FEIGG 163 (315)
T ss_dssp THHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC--SSCE---EEEEE-ESCCH
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE--CCeE---eeeEE-Eechh
Confidence 44566777778899999766666777655444332221 235699999999999999997 5532 22222 23676
Q ss_pred hHHHHH
Q psy7639 1598 EDFDNR 1603 (2568)
Q Consensus 1598 ~d~D~~ 1603 (2568)
..+.+.
T Consensus 164 vrl~e~ 169 (315)
T 3mdq_A 164 QRLIDR 169 (315)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 666554
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=81.75 E-value=39 Score=41.37 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHH--------------HHHHHHHHHHc-CCceEEEEechhHH
Q psy7639 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ--------------RQATKDAGAIA-GLNVMRIVNEPTAA 1545 (2568)
Q Consensus 1481 ~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~q--------------R~~~~~Aa~~A-GL~v~~li~EPtAA 1545 (2568)
+++++...+.+.+.+..+ -..++..+.|++|...+... ...-....+.. |+++ .+.|+..||
T Consensus 55 ~~~~~~~~i~~~i~~~~~--~~~~i~gigi~~pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~~pV-~v~NDa~aa 131 (321)
T 3r8e_A 55 NGIGFVESMKLEIGNFLK--QYPIVKGVGIGWPGLVSLDRTKVILLPNIPSVVNVPIVEILRSEFPHIHF-KIENDAKCA 131 (321)
T ss_dssp TTTCHHHHHHHHHHHHHH--HCTTCCEEEEEESSEECTTSCCEEEBTTBCCCCSCCHHHHHHHHCTTSEE-EEEEHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh--ccCCeeEEEEEecccEECCCCEEEeCCCCccccCCCHHHHHHHHcCCCCE-EEEchHHHH
Confidence 455555555555544433 24567788888887543110 11111222345 7764 699999999
Q ss_pred HHHhhccccccCcceEEEEEeCCcceEEEEEEecCC
Q psy7639 1546 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEG 1581 (2568)
Q Consensus 1546 al~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g 1581 (2568)
|++-.+.......++++++-+|.| +-..++. +|
T Consensus 132 alaE~~~g~~~~~~~~v~l~~GtG-iG~gii~--~G 164 (321)
T 3r8e_A 132 ALGEYYFGENKRMQTFILLALGTG-VGSGVMM--NG 164 (321)
T ss_dssp HHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE--TT
T ss_pred HHHHHHhCCCCCCCcEEEEEECCc-eEEEEEE--CC
Confidence 997544333334567889999988 6666665 66
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=80.82 E-value=48 Score=40.56 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=60.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHH----------------HHHHHHHHHHHcCCceEEEEechh
Q psy7639 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDA----------------QRQATKDAGAIAGLNVMRIVNEPT 1543 (2568)
Q Consensus 1480 ~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~----------------qR~~~~~Aa~~AGL~v~~li~EPt 1543 (2568)
.+|+++...+.+.+.+..+. .++..+.|++|...+.. -++.+.+ ..|++ +.+.|+..
T Consensus 35 ~~~~~~~~~i~~~i~~~~~~---~~i~gigi~~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~---~~~~p-v~v~NDa~ 107 (321)
T 3vgl_A 35 PTAEGIVDAICAAVAGASEG---HDVEAVGIGAAGYVDDKRATVLFAPNIDWRHEPLKDKVEQ---RVGLP-VVVENDAN 107 (321)
T ss_dssp SSHHHHHHHHHHHHHHHHTT---CCEEEEEEEESSEECTTSSCEEECSSSCCEEECHHHHHHH---HHCSC-EEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh---cCceEEEEeccccEeCCCCEEEeCCCCCCcCCCHHHHHhh---hhCCC-EEEEehhh
Confidence 45777766666666554422 36778899999866532 1334443 35886 56999999
Q ss_pred HHHHHhhccccccCcceEEEEEeCCcceEEEEEEecCC
Q psy7639 1544 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEG 1581 (2568)
Q Consensus 1544 AAal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g 1581 (2568)
|||++..+.......++++++-+|.| +-..++. +|
T Consensus 108 aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~--~G 142 (321)
T 3vgl_A 108 AAAWGEYRFGAGQGHDDVICITLGTG-LGGGIII--GN 142 (321)
T ss_dssp HHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE--TT
T ss_pred hHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEE--CC
Confidence 99998544333334567899999988 6666665 66
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=80.59 E-value=99 Score=37.83 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHH----------------HHHHHHHHHHHcCCceEEEEechhH
Q psy7639 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDA----------------QRQATKDAGAIAGLNVMRIVNEPTA 1544 (2568)
Q Consensus 1481 ~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~----------------qR~~~~~Aa~~AGL~v~~li~EPtA 1544 (2568)
+++++...+.+.+.+..... + .+..+.|++|...+.. -++.+.+ ..|++ +.+.|+-.|
T Consensus 59 ~~~~~~~~i~~~i~~~~~~~-~-~~~gigi~~pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~---~~~~p-V~v~NDa~a 132 (327)
T 4db3_A 59 DYPLLLETIAGLVAKYDQEF-A-CEGKIGLGLPGMEDADDATVLTVNVPAAKGKPLRADLEA---KIGRS-VKIENDANC 132 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-T-SCCEEEEEESEEECTTTCCEEESSSGGGTTSCHHHHHHH---HHSSC-CEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc-C-CccEEEEEeeccEeCCCCEEEcCCCccccCCCHHHHHHH---HHCCC-EEEecchhH
Confidence 67777776666665544332 2 3567888888765421 1334443 35787 579999999
Q ss_pred HHHHhhccccccCcceEEEEEeCCcceEEEEEEecCC
Q psy7639 1545 AALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEG 1581 (2568)
Q Consensus 1545 Aal~y~~~~~~~~~~~vlV~D~GGGT~Dvsi~~~~~g 1581 (2568)
||++-.+.......++++++-+|.| +-..++- +|
T Consensus 133 aalgE~~~g~~~~~~~~~~l~~GtG-iG~gii~--~G 166 (327)
T 4db3_A 133 FALSEAWDEELQDAPSVMGLILGTG-FGGGLIY--EG 166 (327)
T ss_dssp HHHHHHTSTTTTTCSEEEEEEESSS-EEEEEEE--TT
T ss_pred HHHHHHHhCCCCCCCcEEEEEeCcc-ceEEEEE--CC
Confidence 9997544333334567888889888 5666664 66
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=80.50 E-value=1.2e+02 Score=37.33 Aligned_cols=82 Identities=5% Similarity=-0.021 Sum_probs=54.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHh--CC-CcccEEEEccCCCCHHHHHHHHHHHHH-cC---CceeEEechhhHHHhhccccc
Q psy7639 2054 APEEISSMVLTKMKETAEAYL--GH-SVRDAVITVPAYFNDAQRQATKDAGAI-AG---LNVMRIVNEPTAAALAYGLDK 2126 (2568)
Q Consensus 2054 ~peei~a~iL~~lk~~ae~~~--g~-~v~~aVItVPa~f~~~qR~a~~~Aa~~-AG---l~vl~linEptAaalaYg~~~ 2126 (2568)
.|+++...+...+++..++.- .. ++..+.|++|...+..+...+++.-+- -| +. +.+.|+-.|||+++ ..
T Consensus 44 ~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~p-v~v~NDa~aaa~a~-~~- 120 (347)
T 2ch5_A 44 GTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSES-YLITTDAAGSIATA-TP- 120 (347)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSC-EEEEEHHHHHHHHH-CS-
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCce-EEEECcHHHHHHhh-CC-
Confidence 567777777776666555432 12 588899999999987765556555443 33 55 47999999999984 31
Q ss_pred CcCCcceEEEEeeCCee
Q psy7639 2127 NLKGERNVLIFDLGGGT 2143 (2568)
Q Consensus 2127 ~~~~~~~vlv~DlGggt 2143 (2568)
.+.+++=+|.|.
T Consensus 121 -----~~~v~v~~GTGi 132 (347)
T 2ch5_A 121 -----DGGVVLISGTGS 132 (347)
T ss_dssp -----SCEEEEEESSSE
T ss_pred -----CCcEEEEEcCCc
Confidence 334555556654
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=80.36 E-value=8.6 Score=47.31 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHH-------------HHHHHHH-HHHc-CCCeeeecchhHHH
Q psy7639 685 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ-------------RQATKDA-GAIA-GLNVMRIVNEPTAA 749 (2568)
Q Consensus 685 speev~a~iL~~L~~~ae~~~~~~~~~~VITVPa~f~~~q-------------r~al~~A-a~~A-Gl~~l~li~Ep~AA 749 (2568)
+|+++...+.+.+.+..+ ....+..+.|++|...+... ...+.+. .+.. |++ +.+.|+..||
T Consensus 55 ~~~~~~~~i~~~i~~~~~--~~~~i~gigi~~pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~~p-V~v~NDa~aa 131 (321)
T 3r8e_A 55 NGIGFVESMKLEIGNFLK--QYPIVKGVGIGWPGLVSLDRTKVILLPNIPSVVNVPIVEILRSEFPHIH-FKIENDAKCA 131 (321)
T ss_dssp TTTCHHHHHHHHHHHHHH--HCTTCCEEEEEESSEECTTSCCEEEBTTBCCCCSCCHHHHHHHHCTTSE-EEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh--ccCCeeEEEEEecccEECCCCEEEeCCCCccccCCCHHHHHHHHcCCCC-EEEEchHHHH
Confidence 345566655555554443 24567788888887543111 0112221 2334 665 6899999999
Q ss_pred HHHhccccCCCCCceEEEEEeCCceeEEEEEE
Q psy7639 750 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILS 781 (2568)
Q Consensus 750 Al~y~~~~~~~~~~~vlV~D~GgGT~Dvsv~~ 781 (2568)
|++-.........++++++-+|.| .-.+++.
T Consensus 132 alaE~~~g~~~~~~~~v~l~~GtG-iG~gii~ 162 (321)
T 3r8e_A 132 ALGEYYFGENKRMQTFILLALGTG-VGSGVMM 162 (321)
T ss_dssp HHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred HHHHHHhCCCCCCCcEEEEEECCc-eEEEEEE
Confidence 997543332334567888999988 5555553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2568 | ||||
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 5e-80 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 5e-80 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 5e-80 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 5e-80 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 7e-09 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 9e-79 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 9e-79 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 9e-79 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 9e-79 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 2e-07 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 1e-71 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 1e-71 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 1e-71 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 4e-71 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 4e-71 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 8e-60 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 8e-60 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 8e-60 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 9e-59 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 2e-57 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 2e-57 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 2e-57 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 1e-56 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 2e-56 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 2e-56 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 2e-56 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 8e-56 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 8e-56 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 3e-48 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 3e-48 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 3e-48 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 1e-47 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 1e-47 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 9e-30 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 9e-30 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 9e-30 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 9e-30 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 0.003 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 3e-24 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 3e-24 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 3e-24 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 3e-24 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 1e-23 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 1e-23 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 1e-23 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 2e-22 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 3e-04 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 9e-23 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 9e-23 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 9e-23 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 9e-23 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 3e-15 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 6e-21 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 6e-21 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 6e-21 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 6e-21 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 7e-20 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 7e-20 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 7e-20 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 7e-20 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 1e-18 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 2e-18 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 2e-18 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 2e-18 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 1e-11 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 0.001 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 0.001 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 0.001 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 0.001 |
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 259 bits (664), Expect = 5e-80
Identities = 156/192 (81%), Positives = 175/192 (91%), Gaps = 1/192 (0%)
Query: 188 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 247
ERNVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHLGGEDFDNR+V+H EFKRK+
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKH 61
Query: 248 KKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDL 307
KKD+S N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+GIDFYT I+RARFEEL +DL
Sbjct: 62 KKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADL 121
Query: 308 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 367
FR TL PVEKAL+DAKLDKS IHD+VLVGGSTRIPK+Q LLQ+FF GK LN SINPDEAV
Sbjct: 122 FRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 181
Query: 368 AYGAAVQAAILS 379
AYGAAVQAAILS
Sbjct: 182 AYGAAVQAAILS 193
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 259 bits (664), Expect = 5e-80
Identities = 156/192 (81%), Positives = 175/192 (91%), Gaps = 1/192 (0%)
Query: 761 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 820
ERNVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHLGGEDFDNR+V+H EFKRK+
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKH 61
Query: 821 KKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDL 880
KKD+S N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+GIDFYT I+RARFEEL +DL
Sbjct: 62 KKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADL 121
Query: 881 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 940
FR TL PVEKAL+DAKLDKS IHD+VLVGGSTRIPK+Q LLQ+FF GK LN SINPDEAV
Sbjct: 122 FRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 181
Query: 941 AYGAAVQAAILS 952
AYGAAVQAAILS
Sbjct: 182 AYGAAVQAAILS 193
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 259 bits (664), Expect = 5e-80
Identities = 156/192 (81%), Positives = 175/192 (91%), Gaps = 1/192 (0%)
Query: 1557 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 1616
ERNVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHLGGEDFDNR+V+H EFKRK+
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKH 61
Query: 1617 KKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDL 1676
KKD+S N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+GIDFYT I+RARFEEL +DL
Sbjct: 62 KKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADL 121
Query: 1677 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 1736
FR TL PVEKAL+DAKLDKS IHD+VLVGGSTRIPK+Q LLQ+FF GK LN SINPDEAV
Sbjct: 122 FRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 181
Query: 1737 AYGAAVQAAILS 1748
AYGAAVQAAILS
Sbjct: 182 AYGAAVQAAILS 193
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 259 bits (664), Expect = 5e-80
Identities = 156/192 (81%), Positives = 175/192 (91%), Gaps = 1/192 (0%)
Query: 2130 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 2189
ERNVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHLGGEDFDNR+V+H EFKRK+
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKH 61
Query: 2190 KKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDL 2249
KKD+S N RA+RRLRTA ERAKRTLSSST+ASIEID+LY+GIDFYT I+RARFEEL +DL
Sbjct: 62 KKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADL 121
Query: 2250 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 2309
FR TL PVEKAL+DAKLDKS IHD+VLVGGSTRIPK+Q LLQ+FF GK LN SINPDEAV
Sbjct: 122 FRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 181
Query: 2310 AYGAAVQAAILS 2321
AYGAAVQAAILS
Sbjct: 182 AYGAAVQAAILS 193
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.8 bits (134), Expect = 7e-09
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 26/156 (16%)
Query: 1086 IDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDA 1145
++ I + +R +D + +R R ++ A + A K T S ++ E D+
Sbjct: 50 VNHFIAEFKRKHKKDISENKRAVRR---------LRTACERA--KRTLSSSTQASIEIDS 98
Query: 1146 TLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPR----GGPT---- 1197
+ +D T + +++ L + + + K A + GG T
Sbjct: 99 LYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAK-LDKSQIHDIVLVGGSTRIPK 157
Query: 1198 ------NFFCGKSLNLSINPDEAVAYGAAVQAAILS 1227
+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 158 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 256 bits (655), Expect = 9e-79
Identities = 93/199 (46%), Positives = 129/199 (64%), Gaps = 8/199 (4%)
Query: 188 GERNVLIFDLGGGTFDVSILSIDE---GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 244
G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHLGGEDFD+RL+++L EEFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 245 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI----DFYTKISRARF 300
+ D+ +P A++RL+ AAE+AK LSS+ + + + + K++RA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 301 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 360
E L DL +++ ++ ALQDA L S I DV+LVGG TR+P VQ + FF GK
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 361 INPDEAVAYGAAVQAAILS 379
+NPDEAVA GAAVQ +L+
Sbjct: 180 VNPDEAVAIGAAVQGGVLT 198
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 256 bits (655), Expect = 9e-79
Identities = 93/199 (46%), Positives = 129/199 (64%), Gaps = 8/199 (4%)
Query: 761 GERNVLIFDLGGGTFDVSILSIDE---GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 817
G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHLGGEDFD+RL+++L EEFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 818 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI----DFYTKISRARF 873
+ D+ +P A++RL+ AAE+AK LSS+ + + + + K++RA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 874 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 933
E L DL +++ ++ ALQDA L S I DV+LVGG TR+P VQ + FF GK
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 934 INPDEAVAYGAAVQAAILS 952
+NPDEAVA GAAVQ +L+
Sbjct: 180 VNPDEAVAIGAAVQGGVLT 198
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 256 bits (655), Expect = 9e-79
Identities = 93/199 (46%), Positives = 129/199 (64%), Gaps = 8/199 (4%)
Query: 1557 GERNVLIFDLGGGTFDVSILSIDE---GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 1613
G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHLGGEDFD+RL+++L EEFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 1614 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI----DFYTKISRARF 1669
+ D+ +P A++RL+ AAE+AK LSS+ + + + + K++RA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 1670 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 1729
E L DL +++ ++ ALQDA L S I DV+LVGG TR+P VQ + FF GK
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 1730 INPDEAVAYGAAVQAAILS 1748
+NPDEAVA GAAVQ +L+
Sbjct: 180 VNPDEAVAIGAAVQGGVLT 198
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 256 bits (655), Expect = 9e-79
Identities = 93/199 (46%), Positives = 129/199 (64%), Gaps = 8/199 (4%)
Query: 2130 GERNVLIFDLGGGTFDVSILSIDE---GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 2186
G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHLGGEDFD+RL+++L EEFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 2187 RKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI----DFYTKISRARF 2242
+ D+ +P A++RL+ AAE+AK LSS+ + + + + K++RA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 2243 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 2302
E L DL +++ ++ ALQDA L S I DV+LVGG TR+P VQ + FF GK
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 2303 INPDEAVAYGAAVQAAILS 2321
+NPDEAVA GAAVQ +L+
Sbjct: 180 VNPDEAVAIGAAVQGGVLT 198
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 51.8 bits (124), Expect = 2e-07
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILS 1227
F GK +NPDEAVA GAAVQ +L+
Sbjct: 171 FFGKEPRKDVNPDEAVAIGAAVQGGVLT 198
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 234 bits (598), Expect = 1e-71
Identities = 118/159 (74%), Positives = 143/159 (89%)
Query: 956 SSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 1015
S +QD+LL+DVTPLSLGIETAGGVMT LI+RNT IP KQTQTFTTY+DNQP V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 1016 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIK 1075
GERAMTKDNNLLG F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 1076 NDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 1114
NDKGRLSKE+I+RM+ +AE+YK EDE+Q++++S++N+LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 234 bits (598), Expect = 1e-71
Identities = 118/159 (74%), Positives = 143/159 (89%)
Query: 1752 SSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 1811
S +QD+LL+DVTPLSLGIETAGGVMT LI+RNT IP KQTQTFTTY+DNQP V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 1812 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIK 1871
GERAMTKDNNLLG F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 1872 NDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 1910
NDKGRLSKE+I+RM+ +AE+YK EDE+Q++++S++N+LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 234 bits (598), Expect = 1e-71
Identities = 118/159 (74%), Positives = 143/159 (89%)
Query: 2325 SSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 2384
S +QD+LL+DVTPLSLGIETAGGVMT LI+RNT IP KQTQTFTTY+DNQP V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 2385 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIK 2444
GERAMTKDNNLLG F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 2445 NDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 2483
NDKGRLSKE+I+RM+ +AE+YK EDE+Q++++S++N+LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 232 bits (594), Expect = 4e-71
Identities = 117/159 (73%), Positives = 143/159 (89%)
Query: 383 SSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 442
S +QD+LL+DVTPLSLGIETAGGVM+ LI+RNT IP KQTQTFTTY+DNQP V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 443 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIK 502
GERAMTKDNNLLG F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 503 NDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 541
NDKGRLSKE+I+RM+ +AE+YK EDE+Q++++S++N+LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 232 bits (594), Expect = 4e-71
Identities = 117/159 (73%), Positives = 143/159 (89%)
Query: 1231 SSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 1290
S +QD+LL+DVTPLSLGIETAGGVM+ LI+RNT IP KQTQTFTTY+DNQP V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 1291 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIK 1350
GERAMTKDNNLLG F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 1351 NDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 1389
NDKGRLSKE+I+RM+ +AE+YK EDE+Q++++S++N+LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 201 bits (512), Expect = 8e-60
Identities = 109/136 (80%), Positives = 123/136 (90%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
GDAAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE
Sbjct: 49 GDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGET 108
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K+F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLR 168
Query: 169 IVNEPTAAALAYGLDK 184
I+NEPTAAA+AYGLDK
Sbjct: 169 IINEPTAAAIAYGLDK 184
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 201 bits (512), Expect = 8e-60
Identities = 109/136 (80%), Positives = 123/136 (90%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE
Sbjct: 49 GDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGET 108
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K+F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLR 168
Query: 742 IVNEPTAAALAYGLDK 757
I+NEPTAAA+AYGLDK
Sbjct: 169 IINEPTAAAIAYGLDK 184
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 201 bits (512), Expect = 8e-60
Identities = 109/136 (80%), Positives = 123/136 (90%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE
Sbjct: 49 GDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGET 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K+F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 109 KSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLR 168
Query: 2111 IVNEPTAAALAYGLDK 2126
I+NEPTAAA+AYGLDK
Sbjct: 169 IINEPTAAAIAYGLDK 184
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 199 bits (506), Expect = 9e-59
Identities = 107/134 (79%), Positives = 121/134 (90%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKT 1479
AAKNQVAMNP NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE K+
Sbjct: 51 AAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKS 110
Query: 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 1539
F PEE+SSMVLTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+RI+
Sbjct: 111 FYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRII 170
Query: 1540 NEPTAAALAYGLDK 1553
NEPTAAA+AYGLDK
Sbjct: 171 NEPTAAAIAYGLDK 184
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 195 bits (496), Expect = 2e-57
Identities = 83/137 (60%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 49 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 105
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 106 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 165
Query: 169 IVNEPTAAALAYGLDKN 185
I+NEPTAAALAYGLDK
Sbjct: 166 IINEPTAAALAYGLDKG 182
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 195 bits (496), Expect = 2e-57
Identities = 83/137 (60%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 49 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 105
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 106 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 165
Query: 742 IVNEPTAAALAYGLDKN 758
I+NEPTAAALAYGLDK
Sbjct: 166 IINEPTAAALAYGLDKG 182
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 195 bits (496), Expect = 2e-57
Identities = 83/137 (60%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG
Sbjct: 49 GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG-- 105
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
+ AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V R
Sbjct: 106 QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKR 165
Query: 2111 IVNEPTAAALAYGLDKN 2127
I+NEPTAAALAYGLDK
Sbjct: 166 IINEPTAAALAYGLDKG 182
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 192 bits (490), Expect = 1e-56
Identities = 82/136 (60%), Positives = 97/136 (71%), Gaps = 3/136 (2%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT+F KRLIGR+F D ++Q+D+ PF ++ VE KG +
Sbjct: 50 QPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--Q 106
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
AP +IS+ VL KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V RI
Sbjct: 107 KMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRI 166
Query: 1539 VNEPTAAALAYGLDKN 1554
+NEPTAAALAYGLDK
Sbjct: 167 INEPTAAALAYGLDKG 182
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 188 bits (480), Expect = 2e-56
Identities = 76/118 (64%), Positives = 91/118 (77%)
Query: 962 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 1021
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 1022 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1079
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 188 bits (480), Expect = 2e-56
Identities = 76/118 (64%), Positives = 91/118 (77%)
Query: 1758 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 1817
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 1818 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1875
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 188 bits (480), Expect = 2e-56
Identities = 76/118 (64%), Positives = 91/118 (77%)
Query: 2331 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 2390
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 2391 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 2448
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 187 bits (476), Expect = 8e-56
Identities = 75/118 (63%), Positives = 91/118 (77%)
Query: 389 VLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 448
VLL+DVTPLSLGIET GGVM+ LI +NT IP K +Q F+T DNQ AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 449 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 506
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 187 bits (476), Expect = 8e-56
Identities = 75/118 (63%), Positives = 91/118 (77%)
Query: 1237 VLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 1296
VLL+DVTPLSLGIET GGVM+ LI +NT IP K +Q F+T DNQ AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 1297 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1354
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 165 bits (420), Expect = 3e-48
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 966 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1025
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 1026 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1079
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 165 bits (420), Expect = 3e-48
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 1762 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1821
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 1822 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1875
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 165 bits (420), Expect = 3e-48
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 2335 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 2394
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 2395 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 2448
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 164 bits (416), Expect = 1e-47
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 393 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 452
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 453 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 506
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 164 bits (416), Expect = 1e-47
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 1241 DVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 1300
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 1301 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1354
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (291), Expect = 9e-30
Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 189 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 248
++ D+GGGT +V+++S+ T + G++ D +V ++ E ++
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIV------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 249 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 308
+ + + ++ + E ++ L G+ + E +
Sbjct: 60 ERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVV 114
Query: 309 RSTLQPVEKALQDAKLDKSA---IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDE 365
+ ++ V L+ + + + L GG + + + +LLQ G S+ S P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLT 173
Query: 366 AVAYGAAVQA 375
AVA GA +
Sbjct: 174 AVAKGAGMVL 183
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (291), Expect = 9e-30
Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 762 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 821
++ D+GGGT +V+++S+ T + G++ D +V ++ E ++
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIV------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 822 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 881
+ + + ++ + E ++ L G+ + E +
Sbjct: 60 ERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVV 114
Query: 882 RSTLQPVEKALQDAKLDKSA---IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDE 938
+ ++ V L+ + + + L GG + + + +LLQ G S+ S P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLT 173
Query: 939 AVAYGAAVQA 948
AVA GA +
Sbjct: 174 AVAKGAGMVL 183
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (291), Expect = 9e-30
Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 1558 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 1617
++ D+GGGT +V+++S+ T + G++ D +V ++ E ++
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIV------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 1618 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 1677
+ + + ++ + E ++ L G+ + E +
Sbjct: 60 ERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVV 114
Query: 1678 RSTLQPVEKALQDAKLDKSA---IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDE 1734
+ ++ V L+ + + + L GG + + + +LLQ G S+ S P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLT 173
Query: 1735 AVAYGAAVQA 1744
AVA GA +
Sbjct: 174 AVAKGAGMVL 183
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (291), Expect = 9e-30
Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 2131 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 2190
++ D+GGGT +V+++S+ T + G++ D +V ++ E ++
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIV------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 2191 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 2250
+ + + ++ + E ++ L G+ + E +
Sbjct: 60 ERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVV 114
Query: 2251 RSTLQPVEKALQDAKLDKSA---IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDE 2307
+ ++ V L+ + + + L GG + + + +LLQ G S+ S P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLT 173
Query: 2308 AVAYGAAVQA 2317
AVA GA +
Sbjct: 174 AVAKGAGMVL 183
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 39.1 bits (90), Expect = 0.003
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 15/152 (9%)
Query: 1087 DRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAT 1146
I A DE Q R + R + + E+++
Sbjct: 32 WESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDL 91
Query: 1147 LKWLDNNTLADKEEYQDKLQQLQKSCMPLMSK------MHGGAGGASAGDMPRGGPTNF- 1199
L E ++ L+ + + + + + G GG +
Sbjct: 92 STGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLR 151
Query: 1200 --------FCGKSLNLSINPDEAVAYGAAVQA 1223
G S+ S P AVA GA +
Sbjct: 152 GLDTLLQKETGISVIRSEEPLTAVAKGAGMVL 183
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (246), Expect = 3e-24
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 34/194 (17%)
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
+ L ++LI DLGG T D+S + G L + GD+ LG + + L+
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 244 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 303
SS A I D +I+ +
Sbjct: 58 T---------------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISI 90
Query: 304 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-- 361
++ L+ +E+ + + + S V+++GG + + ++ +
Sbjct: 91 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 148
Query: 362 NPDEAVAYGAAVQA 375
N + G +
Sbjct: 149 NSQYDLVNGMYLIG 162
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (246), Expect = 3e-24
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 34/194 (17%)
Query: 757 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 816
+ L ++LI DLGG T D+S + G L + GD+ LG + + L+
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 817 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 876
SS A I D +I+ +
Sbjct: 58 T---------------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISI 90
Query: 877 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-- 934
++ L+ +E+ + + + S V+++GG + + ++ +
Sbjct: 91 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 148
Query: 935 NPDEAVAYGAAVQA 948
N + G +
Sbjct: 149 NSQYDLVNGMYLIG 162
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (246), Expect = 3e-24
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 34/194 (17%)
Query: 1553 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612
+ L ++LI DLGG T D+S + G L + GD+ LG + + L+
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 1672
SS A I D +I+ +
Sbjct: 58 T---------------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISI 90
Query: 1673 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-- 1730
++ L+ +E+ + + + S V+++GG + + ++ +
Sbjct: 91 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 148
Query: 1731 NPDEAVAYGAAVQA 1744
N + G +
Sbjct: 149 NSQYDLVNGMYLIG 162
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (246), Expect = 3e-24
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 34/194 (17%)
Query: 2126 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 2185
+ L ++LI DLGG T D+S + G L + GD+ LG + + L+
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 2186 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 2245
SS A I D +I+ +
Sbjct: 58 T---------------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISI 90
Query: 2246 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-- 2303
++ L+ +E+ + + + S V+++GG + + ++ +
Sbjct: 91 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 148
Query: 2304 NPDEAVAYGAAVQA 2317
N + G +
Sbjct: 149 NSQYDLVNGMYLIG 162
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 94.5 bits (235), Expect = 1e-23
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 536 ARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 593
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++ + +
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 594 QLQKSCMPLMSKMHGGAGGASAG 616
+L+K C P+++K++ AGG G
Sbjct: 62 ELEKVCNPIITKLYQSAGGMPGG 84
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 94.5 bits (235), Expect = 1e-23
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 1109 ARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 1166
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++ + +
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 1167 QLQKSCMPLMSKMHGGAGGASAG 1189
+L+K C P+++K++ AGG G
Sbjct: 62 ELEKVCNPIITKLYQSAGGMPGG 84
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 94.5 bits (235), Expect = 1e-23
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 1905 ARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 1962
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++ + +
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 1963 QLQKSCMPLMSKMHGGAGGASAG 1985
+L+K C P+++K++ AGG G
Sbjct: 62 ELEKVCNPIITKLYQSAGGMPGG 84
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 91.0 bits (226), Expect = 2e-22
Identities = 28/85 (32%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 2478 ARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 2535
+ LE+Y FN+K +++ K+ + +K + ++C+ + WLD N A+KEE++ + +
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 2536 QLQKSCMPLMSKMHGGASAGDMPRG 2560
+L+K C P+++K++ SAG MP G
Sbjct: 62 ELEKVCNPIITKLYQ--SAGGMPGG 84
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.4 bits (92), Expect = 3e-04
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1384 ARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDAAKNQVAMNPKNT--VFDAKR 1438
+ LE+Y FN+K +++ K+ + +K + ++C+ + + N F+ ++
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQ 60
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 92.5 bits (230), Expect = 9e-23
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 508 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 567
L+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 568 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLM 603
A L DK + K+Q+L + LM
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLM 93
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 92.5 bits (230), Expect = 9e-23
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 1081 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1140
L+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 1141 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLM 1176
A L DK + K+Q+L + LM
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLM 93
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 92.5 bits (230), Expect = 9e-23
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 1877 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1936
L+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 1937 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLM 1972
A L DK + K+Q+L + LM
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLM 93
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 92.5 bits (230), Expect = 9e-23
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 2450 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 2509
L+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 2510 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLM 2545
A L DK + K+Q+L + LM
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLM 93
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 71.3 bits (175), Expect = 3e-15
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 1356 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1415
L+++EI +M+ DAE + D + +E + RN + + + ++ ++ AG+KL +K+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 1416 EECDAAKN 1423
A +
Sbjct: 61 SALTALET 68
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 89.0 bits (220), Expect = 6e-21
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 4/128 (3%)
Query: 56 VAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEE 115
V + K V + +I +I + + I+ A
Sbjct: 14 VFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTP--ATIKAIRPMRDGVIADYT 71
Query: 116 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 175
++ ++L A+ + VI VP D +R+A DAG AG + + ++ EP A
Sbjct: 72 VALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMA 131
Query: 176 AALAYGLD 183
AA+ G +
Sbjct: 132 AAI--GSN 137
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 89.0 bits (220), Expect = 6e-21
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 4/128 (3%)
Query: 629 VAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEE 688
V + K V + +I +I + + I+ A
Sbjct: 14 VFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTP--ATIKAIRPMRDGVIADYT 71
Query: 689 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 748
++ ++L A+ + VI VP D +R+A DAG AG + + ++ EP A
Sbjct: 72 VALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMA 131
Query: 749 AALAYGLD 756
AA+ G +
Sbjct: 132 AAI--GSN 137
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 89.0 bits (220), Expect = 6e-21
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 4/128 (3%)
Query: 1425 VAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEE 1484
V + K V + +I +I + + I+ A
Sbjct: 14 VFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTP--ATIKAIRPMRDGVIADYT 71
Query: 1485 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 1544
++ ++L A+ + VI VP D +R+A DAG AG + + ++ EP A
Sbjct: 72 VALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMA 131
Query: 1545 AALAYGLD 1552
AA+ G +
Sbjct: 132 AAI--GSN 137
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 89.0 bits (220), Expect = 6e-21
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 4/128 (3%)
Query: 1998 VAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEE 2057
V + K V + +I +I + + I+ A
Sbjct: 14 VFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTP--ATIKAIRPMRDGVIADYT 71
Query: 2058 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 2117
++ ++L A+ + VI VP D +R+A DAG AG + + ++ EP A
Sbjct: 72 VALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMA 131
Query: 2118 AALAYGLD 2125
AA+ G +
Sbjct: 132 AAI--GSN 137
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.7 bits (214), Expect = 7e-20
Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 35/183 (19%)
Query: 189 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 248
++ D+G T DV +++ + V + +G D + L +A+E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINL--MDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVP 62
Query: 249 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 308
D+ A+ A + + ++S E+L + +
Sbjct: 63 FDL-------------AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRII 99
Query: 309 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAV 367
+ + + + ++ VGG + + + + G + + + A
Sbjct: 100 ENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 150
Query: 368 AYG 370
A G
Sbjct: 151 ALG 153
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.7 bits (214), Expect = 7e-20
Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 35/183 (19%)
Query: 762 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 821
++ D+G T DV +++ + V + +G D + L +A+E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINL--MDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVP 62
Query: 822 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 881
D+ A+ A + + ++S E+L + +
Sbjct: 63 FDL-------------AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRII 99
Query: 882 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAV 940
+ + + + ++ VGG + + + + G + + + A
Sbjct: 100 ENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 150
Query: 941 AYG 943
A G
Sbjct: 151 ALG 153
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.7 bits (214), Expect = 7e-20
Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 35/183 (19%)
Query: 1558 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 1617
++ D+G T DV +++ + V + +G D + L +A+E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINL--MDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVP 62
Query: 1618 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 1677
D+ A+ A + + ++S E+L + +
Sbjct: 63 FDL-------------AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRII 99
Query: 1678 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAV 1736
+ + + + ++ VGG + + + + G + + + A
Sbjct: 100 ENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 150
Query: 1737 AYG 1739
A G
Sbjct: 151 ALG 153
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.7 bits (214), Expect = 7e-20
Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 35/183 (19%)
Query: 2131 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 2190
++ D+G T DV +++ + V + +G D + L +A+E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINL--MDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVP 62
Query: 2191 KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLF 2250
D+ A+ A + + ++S E+L + +
Sbjct: 63 FDL-------------AQEALSHPVMFRQKQVGG----------PEVSGPILEDLANRII 99
Query: 2251 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI-NPDEAV 2309
+ + + + ++ VGG + + + + G + + + A
Sbjct: 100 ENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 150
Query: 2310 AYG 2312
A G
Sbjct: 151 ALG 153
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 81.5 bits (201), Expect = 1e-18
Identities = 17/117 (14%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 2450 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 2509
L+ EI MI D+ Y ++D + + + + ++ AL L+ +E+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 2510 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPTVEE 2566
+ + + D + + ++ + K ++ + + G +V+E
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRAL--KGHSVDE 112
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 2e-18
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 508 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 567
L+ EI MI D+ Y ++D + + + + ++ AL L+ +E+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 568 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 610
+ + + D + + ++ + K ++ +
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 2e-18
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 1081 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1140
L+ EI MI D+ Y ++D + + + + ++ AL L+ +E+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 1141 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 1183
+ + + D + + ++ + K ++ +
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 2e-18
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 1877 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1936
L+ EI MI D+ Y ++D + + + + ++ AL L+ +E+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 1937 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 1979
+ + + D + + ++ + K ++ +
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 61.8 bits (150), Expect = 1e-11
Identities = 12/68 (17%), Positives = 26/68 (38%)
Query: 1356 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1415
L+ EI MI D+ Y ++D + + + + ++ AL L+ +E+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 1416 EECDAAKN 1423
+
Sbjct: 61 DAAAHLSE 68
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 39.9 bits (92), Expect = 0.001
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 187 KGERN--VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF--DNRLVSHLAEE 242
E++ V++ +LG + G ++ +G + D V + E
Sbjct: 2 TPEKDRGVVVVNLGYNFTGLIAYK--NGVPIKISY----VPVGMKHVIKDVSAVLDTSFE 55
Query: 243 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEE 302
+ A+ E R L +T + L I AR E
Sbjct: 56 ESERLIITHGN---AVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVII-------HARLRE 105
Query: 303 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 352
+ S + + VE + + VVL GG +IP++ L F
Sbjct: 106 IMSKSKK-FFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVF 153
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 39.9 bits (92), Expect = 0.001
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 760 KGERN--VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF--DNRLVSHLAEE 815
E++ V++ +LG + G ++ +G + D V + E
Sbjct: 2 TPEKDRGVVVVNLGYNFTGLIAYK--NGVPIKISY----VPVGMKHVIKDVSAVLDTSFE 55
Query: 816 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEE 875
+ A+ E R L +T + L I AR E
Sbjct: 56 ESERLIITHGN---AVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVII-------HARLRE 105
Query: 876 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 925
+ S + + VE + + VVL GG +IP++ L F
Sbjct: 106 IMSKSKK-FFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVF 153
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 39.9 bits (92), Expect = 0.001
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 1556 KGERN--VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF--DNRLVSHLAEE 1611
E++ V++ +LG + G ++ +G + D V + E
Sbjct: 2 TPEKDRGVVVVNLGYNFTGLIAYK--NGVPIKISY----VPVGMKHVIKDVSAVLDTSFE 55
Query: 1612 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEE 1671
+ A+ E R L +T + L I AR E
Sbjct: 56 ESERLIITHGN---AVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVII-------HARLRE 105
Query: 1672 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 1721
+ S + + VE + + VVL GG +IP++ L F
Sbjct: 106 IMSKSKK-FFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVF 153
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 39.9 bits (92), Expect = 0.001
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 2129 KGERN--VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF--DNRLVSHLAEE 2184
E++ V++ +LG + G ++ +G + D V + E
Sbjct: 2 TPEKDRGVVVVNLGYNFTGLIAYK--NGVPIKISY----VPVGMKHVIKDVSAVLDTSFE 55
Query: 2185 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEE 2244
+ A+ E R L +T + L I AR E
Sbjct: 56 ESERLIITHGN---AVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVII-------HARLRE 105
Query: 2245 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 2294
+ S + + VE + + VVL GG +IP++ L F
Sbjct: 106 IMSKSKK-FFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVF 153
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2568 | |||
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.98 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.97 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.95 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.95 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.95 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.94 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.94 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.91 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.79 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.7 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.65 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.57 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.35 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.23 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.2 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.2 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.18 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.16 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.06 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.04 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.02 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 98.85 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 98.76 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.18 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.09 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.06 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.02 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 96.95 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 96.81 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 96.78 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 96.75 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 96.74 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 96.54 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 96.41 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 96.21 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 91.89 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 90.11 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 89.83 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 89.17 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 88.97 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 88.7 |
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-37 Score=358.14 Aligned_cols=191 Identities=82% Similarity=1.194 Sum_probs=186.8
Q ss_pred CcceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy7639 2130 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAER 2209 (2568)
Q Consensus 2130 ~~~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~ 2209 (2568)
.+++|||||+||||||+||+++.++ .++|++++||..|||++||++|++|+.++|.++++.|++.+++++.||+.+||+
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~-~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 81 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACER 81 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCC-EEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 4688999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHH
Q psy7639 2210 AKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 2289 (2568)
Q Consensus 2210 ~K~~LS~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~ 2289 (2568)
+|+.||.+.++.++++.++.+.++..+|||++||++++|+++++.++++++|+++++.+.+|+.|+||||+||+|.||+.
T Consensus 82 ~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~ 161 (193)
T d1bupa2 82 AKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL 161 (193)
T ss_dssp HHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred HhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcchhHHhhHHHHHHHhh
Q psy7639 2290 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321 (2568)
Q Consensus 2290 l~~~f~~~~~~~~~npdeava~GAa~~aa~ls 2321 (2568)
|+++|+++++..++|||||||+|||++||+||
T Consensus 162 i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 162 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 99999888999999999999999999999986
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.7e-37 Score=358.07 Aligned_cols=189 Identities=49% Similarity=0.782 Sum_probs=179.9
Q ss_pred cceEEEEeeCCeeeEEEEEEEc----CCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy7639 2131 ERNVLIFDLGGGTFDVSILSID----EGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTA 2206 (2568)
Q Consensus 2131 ~~~vlv~DlGggt~dvsil~~~----~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~ 2206 (2568)
+++||||||||||||+||+++. ++ .++|++++||.+|||++||++|++|+.++|.++++.|++.++++++||+++
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~-~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ 80 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 80 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----C-CCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCc-EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 5789999999999999999996 34 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCcceeEEEEecccCCc----ceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccC
Q psy7639 2207 AERAKRTLSSSTEASIEIDALYDGI----DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 2282 (2568)
Q Consensus 2207 ~e~~K~~LS~~~~~~~~i~~~~~~~----d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstr 2282 (2568)
||++|+.||.+.++.++++.++++. ++.++|||++|+++++|+++++.++++++|++|++++.+||.|+||||+||
T Consensus 81 ~e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr 160 (198)
T d1dkgd2 81 AEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTR 160 (198)
T ss_dssp HHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGG
T ss_pred HHHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccC
Confidence 9999999999999999999877654 689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHHhh
Q psy7639 2283 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321 (2568)
Q Consensus 2283 iP~v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~ls 2321 (2568)
+|.|++.|+++| ++++..++|||||||+|||++||+||
T Consensus 161 ~p~l~~~i~~~f-~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 161 MPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp SHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHH-CCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 999999999999 46788999999999999999999986
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.1e-35 Score=321.55 Aligned_cols=156 Identities=74% Similarity=1.157 Sum_probs=151.9
Q ss_pred cccceeEeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCC
Q psy7639 1233 AIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1312 (2568)
Q Consensus 1233 ~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~ 1312 (2568)
.-+++.|+||+|+||||++.+|.|.+||+||++||+++++.|||++|||++|.|+|||||+..++||.+||+|.|+||||
T Consensus 3 ~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~ 82 (159)
T d1yuwa1 3 NVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPP 82 (159)
T ss_dssp CTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCC
T ss_pred ccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEecCCCceEEEEeeCCCCccccEEEeecCCCCCHHHHHHHHHHHHhhhhhhHHHHHHhcccccE
Q psy7639 1313 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNL 1388 (2568)
Q Consensus 1313 ~~~g~~~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lGttns~ 1388 (2568)
+|+|.|+|+|||++|+||+|+|+|+|+.||++++|+|....++||++|+++|+++|++++.+|++.+.++-..|.+
T Consensus 83 ~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~l 158 (159)
T d1yuwa1 83 APRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSL 158 (159)
T ss_dssp CSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEEC
T ss_pred CCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998889999999999999999999999999999888764
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.2e-33 Score=317.89 Aligned_cols=191 Identities=82% Similarity=1.194 Sum_probs=184.4
Q ss_pred CCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q psy7639 761 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAER 840 (2568)
Q Consensus 761 ~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~ 840 (2568)
.+++|||||+||||||+|++++.++ .++++++.|+..+||.+||++|++|+.++|.++++.++..+++++.+|+.+||+
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~-~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 81 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACER 81 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCC-EEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 4688999999999999999999877 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcceeeeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHH
Q psy7639 841 AKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 920 (2568)
Q Consensus 841 aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~ 920 (2568)
+|+.||.+.++.+.++.++.+.++..+|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+||+|+|++.
T Consensus 82 ~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~ 161 (193)
T d1bupa2 82 AKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL 161 (193)
T ss_dssp HHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred HhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCccccccCCchhHHHhhHHHHHHHHc
Q psy7639 921 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 921 l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
|+++|++.++..++||++|||+|||++||+||
T Consensus 162 i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 162 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 99999888888899999999999999999986
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=3.6e-33 Score=303.77 Aligned_cols=157 Identities=75% Similarity=1.159 Sum_probs=153.9
Q ss_pred cccceEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCC
Q psy7639 2327 AIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406 (2568)
Q Consensus 2327 ~~~~~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~ 2406 (2568)
.+++++|+||+|+||||++.||.|.++|||||+||++++++|+|..|||+.+.|+|||||+..+.+|.+||+|.|+|+||
T Consensus 3 ~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~ 82 (159)
T d1yuwa1 3 NVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPP 82 (159)
T ss_dssp CTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCC
T ss_pred ccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Q psy7639 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLE 2483 (2568)
Q Consensus 2407 ~~~g~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE 2483 (2568)
+|+|.++|+|+|++|.||+|+|+|.++.||++..++|....+.||++||++|++++++|+.+|++.|+++++||.||
T Consensus 83 ~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 83 APRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred CCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999887889999999999999999999999999999999986
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.97 E-value=3.5e-32 Score=313.34 Aligned_cols=190 Identities=48% Similarity=0.760 Sum_probs=176.6
Q ss_pred CceEEEEEeCCceeEEEEEEEcC---CcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHH
Q psy7639 762 ERNVLIFDLGGGTFDVSILSIDE---GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAA 838 (2568)
Q Consensus 762 ~~~vlV~D~GgGT~Dvsv~~~~~---~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 838 (2568)
+++|||||+||||||+|++++.. +..++++++.++..+||++||++|++|+.++|.++++.++..+++++.+|+.+|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 46899999999999999999963 235899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcceeeeccccCC----cceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCc
Q psy7639 839 ERAKRTLSSSTEASIEIDALYDG----IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914 (2568)
Q Consensus 839 E~aK~~LS~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssri 914 (2568)
|++|+.||.+.+++++++.+..+ .+++++|||++|+++++|+++++.++|+++|+++++++.+|+.|+|+||+||+
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 99999999999999998865544 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHc
Q psy7639 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952 (2568)
Q Consensus 915 P~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls 952 (2568)
|+|+++|+++|+ .++..++||++|||+|||++|++||
T Consensus 162 p~l~~~i~~~f~-~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFFG-KEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHHS-SCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHC-CCCCCCCChHHHHHHHHHHHHHhcC
Confidence 999999999995 5688899999999999999999886
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4e-29 Score=257.56 Aligned_cols=118 Identities=64% Similarity=1.001 Sum_probs=114.9
Q ss_pred eeEeeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCCCC
Q psy7639 1237 VLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1316 (2568)
Q Consensus 1237 ~~~~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g 1316 (2568)
+.|+||+|+||||++.+|.|.+||+||+.+|+++++.|+|++|||+++.|+|||||+..+++|.+||.|.|.||||+|+|
T Consensus 1 i~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G 80 (118)
T d1dkza2 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (118)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTT
T ss_pred CEEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEecCCCceEEEEeeCCCCccccEEEeecCC
Q psy7639 1317 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1354 (2568)
Q Consensus 1317 ~~~i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~ 1354 (2568)
.|+|+|||++|.||+|+|+|+|+.||+++.++|...+|
T Consensus 81 ~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~G 118 (118)
T d1dkza2 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118 (118)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCS
T ss_pred CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCCC
Confidence 99999999999999999999999999999999987654
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6.2e-29 Score=255.31 Aligned_cols=115 Identities=48% Similarity=0.800 Sum_probs=112.8
Q ss_pred eeccccccceeecCCeeeEecccCccccccceeeeeeecCCCceEEEEEEeccccccccCceeeeeEeCCCCCCCCCCCe
Q psy7639 1240 VDVTPLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319 (2568)
Q Consensus 1240 ~~~~~~~~gi~~~~g~~~~~~~~~~~~p~~~~~~~~t~~~~q~~v~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~~~ 1319 (2568)
+||+|+||||++.+|.|.+||+||+++|+++++.|+|++|||++|.|+|||||+..+++|.+||.|.|.||||+|+|.|+
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceEEEEeeCCCCccccEEEeecCC
Q psy7639 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 1354 (2568)
Q Consensus 1320 i~~~~~~d~~~~l~~~~~d~~~~~~~~~~~~~~~~ 1354 (2568)
|+|||++|+||+|+|+|+|++||++++|+|...+|
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~g 115 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCCC
Confidence 99999999999999999999999999999998765
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=3e-28 Score=277.65 Aligned_cols=173 Identities=65% Similarity=0.964 Sum_probs=163.8
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh---hhhHHHHhhhcCCCccccccccccccccCChhhhhcccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH 1455 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k~ 1455 (2568)
.||||||.+|++.+++..+ |..|++.+||+|+|.+. +|..|+.+...+|.++++++|||||+.++|+..+...+.
T Consensus 7 DfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~~~~~~~ 86 (185)
T d1bupa1 7 DLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKH 86 (185)
T ss_dssp EECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHHHHHHTT
T ss_pred EcChhcEEEEEEECCEEEEEECCCCCccceeEEEECCCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHHHHHhhc
Confidence 5999999999999998877 99999999999999644 599999999999999999999999999999999999999
Q ss_pred cccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCce
Q psy7639 1456 WPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 1535 (2568)
Q Consensus 1456 ~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~v 1535 (2568)
+|+..+...++....+.+.+..+.|+|+||++++|++|++.++.+++.++.++|||||++|++.||++|++||++|||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~~AGl~~ 166 (185)
T d1bupa1 87 WPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNV 166 (185)
T ss_dssp CSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHHHcCCCe
Confidence 99999988777788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhHHHHHhhccc
Q psy7639 1536 MRIVNEPTAAALAYGLDK 1553 (2568)
Q Consensus 1536 ~~li~EPtAAal~y~~~~ 1553 (2568)
++||+||+|||++|++++
T Consensus 167 ~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 167 LRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp EEEEEHHHHHHHHTTTTS
T ss_pred EEEEcCHHHHHHHhcccC
Confidence 999999999999998765
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=5.5e-28 Score=275.53 Aligned_cols=177 Identities=66% Similarity=0.951 Sum_probs=160.3
Q ss_pred cccccccCcccccchhhhccCCCCceeeecccc------cccccccCCCceeecHHHHHhHhhCCCchHHhhhhhcCCCC
Q psy7639 2 KESYIAEGPCAISPAQRRVMRDPGRVVERAALE------LRVKSLTNPLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKF 75 (2568)
Q Consensus 2 ~~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~------~~v~~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~ 75 (2568)
..+||||||+|+++|... +|+ .+++.++ .+++.+. +.++++|..|+.++.++|+++++++|||||+++
T Consensus 2 ~vvGIDfGTt~s~va~~~----~g~-~~ii~~~~~~r~~Ps~i~~~-~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~ 75 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQ----HGK-VEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRF 75 (185)
T ss_dssp CCEEEEECSSEEEEEEEE----TTE-EEECCCTTSCSSEECCEEEC-SSCEEETHHHHTTTTTCGGGEECCHHHHTTCCT
T ss_pred CEEEEEcChhcEEEEEEE----CCE-EEEEECCCCCccceeEEEEC-CCcEEEeechHHHhhcCcccchhHHHHHhCCCC
Confidence 358999999999999752 443 4566553 4555665 468899999999999999999999999999999
Q ss_pred CChhHHhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHH
Q psy7639 76 DDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT 155 (2568)
Q Consensus 76 ~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al 155 (2568)
+|+.++...+.+|+.+..+.++....+.+.++...++|++|++++|++|++.++..++.++.++|||||++|++.||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~ 155 (185)
T d1bupa1 76 DDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQAT 155 (185)
T ss_dssp TCHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHH
T ss_pred ccHHHHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHH
Confidence 99999999999999999888888888889998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEecchhHHHHhhcccc
Q psy7639 156 KDAGAIAGLNVMRIVNEPTAAALAYGLDK 184 (2568)
Q Consensus 156 ~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~ 184 (2568)
++||++|||++++||+||+|||++|++++
T Consensus 156 ~~Aa~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 156 KDAGTIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHHHHHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHHHHHcCCCeEEEEcCHHHHHHHhcccC
Confidence 99999999999999999999999999875
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.94 E-value=6.6e-28 Score=274.36 Aligned_cols=176 Identities=51% Similarity=0.691 Sum_probs=152.4
Q ss_pred cccccccCcccccchhhhccCCCCceeeecccc------cccccccCCCceeecHHHHHhHhhCCCchHHhhhhhcCCCC
Q psy7639 2 KESYIAEGPCAISPAQRRVMRDPGRVVERAALE------LRVKSLTNPLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKF 75 (2568)
Q Consensus 2 ~~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~------~~v~~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~ 75 (2568)
+.+||||||+|+.+|+.. +.+.+++.++ .+.+.+...+++++|..|++++.++|+++++++|||||+++
T Consensus 1 ~VvGIDfGTt~s~va~~~-----~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~ 75 (183)
T d1dkgd1 1 KIIGIDLGTTNSCVAIMD-----GTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRF 75 (183)
T ss_dssp CCCEEECCSSEEEEEEEE-----TTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBS
T ss_pred CEEEEEcChhcEEEEEEE-----CCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCC
Confidence 468999999999999752 2234555442 44555666678999999999999999999999999999999
Q ss_pred CChhHHhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHH
Q psy7639 76 DDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT 155 (2568)
Q Consensus 76 ~d~~v~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al 155 (2568)
.|+.++...+.+||.++..++ ....+...+ +.++|++|++++|++|++.|+.+++.++.++|||||++|++.||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l 152 (183)
T d1dkgd1 76 QDEEVQRDVSIMPFKIIAADN-GDAWVEVKG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQAT 152 (183)
T ss_dssp CSHHHHHHTTTCSSEEEECSS-SBEEEEETT--EEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHH
T ss_pred CcHHHHhhhhcCCEEEEEcCC-CcEEEEECC--EEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 999999999999999987543 344455544 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEecchhHHHHhhccccc
Q psy7639 156 KDAGAIAGLNVMRIVNEPTAAALAYGLDKN 185 (2568)
Q Consensus 156 ~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~ 185 (2568)
++||+.|||++++||+||+|||++|++++.
T Consensus 153 ~~Aa~~AG~~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 153 KDAGRIAGLEVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp HHHHHHTTCEESCCCBHHHHHHHHHTCCC-
T ss_pred HHHHHHcCCCEEEEecCHHHHHHHhcccCC
Confidence 999999999999999999999999998753
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.94 E-value=2.2e-27 Score=270.06 Aligned_cols=170 Identities=50% Similarity=0.726 Sum_probs=156.4
Q ss_pred HhcccccEEEEEEcccccc--cccCCcccccccccchh----hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCRE----ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~--n~~g~~~tPS~v~~~~~----~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++|++.++.+.+ |..|++.+||+++|..+ +|..|+.+...+|.++++++|||||+.+.|+.++...+
T Consensus 6 DfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~~~~~ 85 (183)
T d1dkgd1 6 DLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVS 85 (183)
T ss_dssp ECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTT
T ss_pred EcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHHhhhh
Confidence 5999999999999988877 99999999999999543 59999999999999999999999999999999999999
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
.+||.++.... ....+.+ .++.++|++|++++|++|++.++.++|.++.++|||||++|++.||++|++||++|||+
T Consensus 86 ~~~~~~~~~~~-~~~~~~~--~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~~ 162 (183)
T d1dkgd1 86 IMPFKIIAADN-GDAWVEV--KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLE 162 (183)
T ss_dssp TCSSEEEECSS-SBEEEEE--TTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCE
T ss_pred cCCEEEEEcCC-CcEEEEE--CCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 99999988653 3333344 56789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHhhccc
Q psy7639 1535 VMRIVNEPTAAALAYGLDK 1553 (2568)
Q Consensus 1535 v~~li~EPtAAal~y~~~~ 1553 (2568)
+++|++||+|||++|++++
T Consensus 163 ~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 163 VKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp ESCCCBHHHHHHHHHTCCC
T ss_pred EEEEecCHHHHHHHhcccC
Confidence 9999999999999999865
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=5.7e-25 Score=226.40 Aligned_cols=117 Identities=64% Similarity=0.993 Sum_probs=113.3
Q ss_pred eEEeeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCC
Q psy7639 2331 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410 (2568)
Q Consensus 2331 ~~~~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g 2410 (2568)
+.|+||+|+||||++.+|.|.+|||||++||+++++.|+|..|||+.+.|+|||||+..+++|.+||+|.|+|+||+|+|
T Consensus 1 i~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G 80 (118)
T d1dkza2 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (118)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTT
T ss_pred CEEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeCCCeeEEEEeeeccCCCcceeEEecCC
Q psy7639 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDK 2447 (2568)
Q Consensus 2411 ~~~i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~ 2447 (2568)
.++|+|+|++|.||+|+|+|.|+.||++..++|....
T Consensus 81 ~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 9999999999999999999999999999999998753
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.1e-24 Score=223.55 Aligned_cols=114 Identities=47% Similarity=0.786 Sum_probs=111.4
Q ss_pred eeeccCceeEEecCCeeeEeeecCCCCCccceeeEEeccCCCCcEEEEEeecCcccccCCCceeEEEecCCCCCCCCCcc
Q psy7639 2334 VDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 2413 (2568)
Q Consensus 2334 ~d~~p~~~gi~~~~~~~~~li~r~~~iP~~~~~~f~t~~d~q~~~~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~ 2413 (2568)
+||+|+||||++.+|.|.+|||||++||+++++.|+|..|+|+.+.|+|||||+..+++|..||+|.|+|+||+|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCeeEEEEeeeccCCCcceeEEecCC
Q psy7639 2414 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDK 2447 (2568)
Q Consensus 2414 i~v~f~id~~Gil~v~a~~~~t~~~~~i~i~~~~ 2447 (2568)
|+|+|++|.||+|+|+|+|+.||++..++|+.+.
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~ 114 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCS
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCC
Confidence 9999999999999999999999999999998763
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=2.1e-20 Score=214.93 Aligned_cols=179 Identities=20% Similarity=0.288 Sum_probs=139.8
Q ss_pred CcceEEEEeeCCeeeEEEEEEEcCCcEEEEEEeccCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy7639 2130 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAER 2209 (2568)
Q Consensus 2130 ~~~~vlv~DlGggt~dvsil~~~~g~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~f~~~~~~d~~~~~~~~~~L~~~~e~ 2209 (2568)
++..+||||||||||||||++..+. .+.+....||.+++..+..++...+....+ .......+.....
T Consensus 5 ~~~gvlV~DiGGGT~Dvsi~~~g~~------~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 72 (196)
T d1jcea2 5 EPSGNMVVDIGGGTTEVAVISLGSI------VTWESIRIAGDEMDEAIVQYVRETYRVAIG------ERTAERVKIEIGN 72 (196)
T ss_dssp SSSCEEEEEECSSCEEEEEEETTEE------EEEEEESCSHHHHHHHHHHHHHHHHCEECC------HHHHHHHHHHHCB
T ss_pred CCCceEEEEcCCCcEEEEEEEcCCE------eEEeeecCCCcccccchhhhhhhhhccccc------chhHHHHHHHHhh
Confidence 5678999999999999999986432 334566889999999999998887643322 2222222222222
Q ss_pred Hhhc-cCCcceeEEEEecccCCcceEEeeCHHHHHHHhHHHHHHhhHHHHHHHHHcCCCcc---CcceEEEecCccChHH
Q psy7639 2210 AKRT-LSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKS---AIHDVVLVGGSTRIPK 2285 (2568)
Q Consensus 2210 ~K~~-LS~~~~~~~~i~~~~~~~d~~~~itr~~fe~l~~~l~~~~~~~~~~~l~~a~~~~~---~i~~vilvGGstriP~ 2285 (2568)
++.. .+......+....+.++......++|.+|++++.+++.++...++++|+.++.... .++.|+||||+||||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~ 152 (196)
T d1jcea2 73 VFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRG 152 (196)
T ss_dssp CSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBT
T ss_pred hhhhhhccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchh
Confidence 2111 12244556777778888889999999999999999999999999999998887653 3567999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHHhh
Q psy7639 2286 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321 (2568)
Q Consensus 2286 v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~ls 2321 (2568)
|+++|+++| ++++..+.||++|||+|||+.+..+.
T Consensus 153 v~~~l~~~f-g~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 153 LDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp HHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHH-CcCCccCCChHHHHHHHHHHHHHCHH
Confidence 999999999 58899999999999999999876554
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=4.7e-18 Score=195.02 Aligned_cols=179 Identities=20% Similarity=0.317 Sum_probs=130.3
Q ss_pred cCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q psy7639 1556 KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAE 1635 (2568)
Q Consensus 1556 ~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E 1635 (2568)
.++..+|||||||||||||+++. |.. . ..+....||.+++..+..++...+.... .............
T Consensus 4 ~~~~gvlV~DiGGGT~Dvsi~~~--g~~---~-~~~~~~~gg~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 71 (196)
T d1jcea2 4 EEPSGNMVVDIGGGTTEVAVISL--GSI---V-TWESIRIAGDEMDEAIVQYVRETYRVAI------GERTAERVKIEIG 71 (196)
T ss_dssp TSSSCEEEEEECSSCEEEEEEET--TEE---E-EEEEESCSHHHHHHHHHHHHHHHHCEEC------CHHHHHHHHHHHC
T ss_pred CCCCceEEEEcCCCcEEEEEEEc--CCE---e-EEeeecCCCcccccchhhhhhhhhcccc------cchhHHHHHHHHh
Confidence 45678999999999999999985 321 1 2344568999999999999776554221 1221222222211
Q ss_pred HhhcccC-CCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCc---cccEEEEecCccCCh
Q psy7639 1636 RAKRTLS-SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKS---AIHDVVLVGGSTRIP 1711 (2568)
Q Consensus 1636 ~aK~~Ls-~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~---~Id~ViLVGGssr~P 1711 (2568)
.++.... ......+......++......+++..+++++.++++++...+.++|+.+..... .++.|+||||+|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip 151 (196)
T d1jcea2 72 NVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLR 151 (196)
T ss_dssp BCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSB
T ss_pred hhhhhhhccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcch
Confidence 1111111 122344555556677777788999999999999999999999999998754432 356799999999999
Q ss_pred hHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHH
Q psy7639 1712 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1747 (2568)
Q Consensus 1712 ~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l 1747 (2568)
.|++++++.| +.++....||++|||+|||+++..+
T Consensus 152 ~v~~~l~~~f-g~~v~~~~~P~~aVA~GAai~~~~~ 186 (196)
T d1jcea2 152 GLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKV 186 (196)
T ss_dssp THHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCH
T ss_pred hHHHHHHHHH-CcCCccCCChHHHHHHHHHHHHHCH
Confidence 9999999999 5788889999999999999986443
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=7.3e-17 Score=173.52 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=101.2
Q ss_pred ccccccCcccccchhhhccCCCCceeeecccccccccc-cCC-CceeecHHHHHhHhhCCCchHHhhhhhcCCCCCChhH
Q psy7639 3 ESYIAEGPCAISPAQRRVMRDPGRVVERAALELRVKSL-TNP-LSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKI 80 (2568)
Q Consensus 3 ~~~~~~g~~~~~~a~~~~~~~~~~~~e~~~~~~~v~~~-~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 80 (2568)
-+||||||++|++|.. ..+ ++.++.++.++ ... ..+++|++|+.....+|.++. ..|++.
T Consensus 2 ~iGIDlGTtns~va~~----~~~----~v~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~~k~~~--------- 63 (137)
T d1jcea1 2 DIGIDLGTANTLVFLR----GKG----IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK-AIRPMR--------- 63 (137)
T ss_dssp EEEEEECSSEEEEEET----TTE----EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEE-EECCEE---------
T ss_pred eEEEEcChhhEEEEEe----CCC----EEeecCCcceEecCCCeEEEEehHHhhhhhhccccce-eEEecc---------
Confidence 4799999999998852 222 22333344443 222 344577887777666555532 122111
Q ss_pred HhhcccCCeEEEecCCCCcEEEEEcCcceeecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCHHHHHHHHHHHH
Q psy7639 81 QQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (2568)
Q Consensus 81 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~speel~a~~L~~l~~~ae~~l~~~~~~~VITVPa~f~~~qr~al~~Aa~ 160 (2568)
...+.+.++.++++.+++..++...+..+.++|||||++|++.||+++++||+
T Consensus 64 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~ 116 (137)
T d1jcea1 64 ---------------------------DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGL 116 (137)
T ss_dssp ---------------------------TTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ---------------------------CCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHH
Confidence 13567888999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEecchhHHHHhh
Q psy7639 161 IAGLNVMRIVNEPTAAALAY 180 (2568)
Q Consensus 161 ~AGl~~~~li~Ep~AAAl~y 180 (2568)
.|||++++||+||+|||+..
T Consensus 117 ~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 117 EAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp HTTCSEEEEEEHHHHHHHHT
T ss_pred HcCCCEEEEeCCHHHHHhCC
Confidence 99999999999999999854
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=1.8e-15 Score=162.53 Aligned_cols=125 Identities=22% Similarity=0.197 Sum_probs=95.6
Q ss_pred HhcccccEEEEEEcccccccccCCcccccccccch---h---hhhHHHHhhhcCCCccccccccccccccCChhhhhccc
Q psy7639 1381 RISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR---E---ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK 1454 (2568)
Q Consensus 1381 ~lGttns~~a~~~~~~~~~n~~g~~~tPS~v~~~~---~---~G~~A~~~~~~~p~~tv~~~k~~ig~~~~d~~~~~~~k 1454 (2568)
.||||||++++..++.. ++ .|+.+++.. . +|++|+.....+|.++. ..|++.
T Consensus 6 DlGTtns~va~~~~~~v-~~------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~~k~~~-------------- 63 (137)
T d1jcea1 6 DLGTANTLVFLRGKGIV-VN------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK-AIRPMR-------------- 63 (137)
T ss_dssp EECSSEEEEEETTTEEE-EE------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE-EECCEE--------------
T ss_pred EcChhhEEEEEeCCCEE-ee------cCCcceEecCCCeEEEEehHHhhhhhhccccce-eEEecc--------------
Confidence 59999999987544322 23 255555532 2 36777666655554432 222222
Q ss_pred ccccEEeeCCCCCceeEEecCCccccCHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHHcCCc
Q psy7639 1455 HWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 1534 (2568)
Q Consensus 1455 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~ev~a~iL~~lk~~ae~~l~~~~~~~ViTVPa~f~~~qR~~~~~Aa~~AGL~ 1534 (2568)
+..+++.++.+.++++++..++.+++..+.++||||||+|++.||++|++||++|||+
T Consensus 64 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~ 121 (137)
T d1jcea1 64 ----------------------DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGAS 121 (137)
T ss_dssp ----------------------TTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCS
T ss_pred ----------------------CCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCC
Confidence 2245678889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEechhHHHHHh
Q psy7639 1535 VMRIVNEPTAAALAY 1549 (2568)
Q Consensus 1535 v~~li~EPtAAal~y 1549 (2568)
+++||+||+|||+..
T Consensus 122 vv~li~EPtAAAiGa 136 (137)
T d1jcea1 122 KVFLIEEPMAAAIGS 136 (137)
T ss_dssp EEEEEEHHHHHHHHT
T ss_pred EEEEeCCHHHHHhCC
Confidence 999999999999853
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=4.1e-13 Score=129.42 Aligned_cols=79 Identities=29% Similarity=0.670 Sum_probs=71.9
Q ss_pred HHHhHHHHHHHHHHHhhhc--cCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy7639 2478 ARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGASAG 2555 (2568)
Q Consensus 2478 akN~lE~~iy~~r~~L~~~--~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee~~~k~~~L~~~~~pi~~r~~e~~g~~ 2555 (2568)
++|+||+|||++|+.|.+. ..++++++++.|.++|+++.+||++|+++++++|++|+++|+.+|.||+.|+|+.+|++
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g~~ 81 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGM 81 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 5799999999999999864 38899999999999999999999988789999999999999999999999999866554
Q ss_pred C
Q psy7639 2556 D 2556 (2568)
Q Consensus 2556 ~ 2556 (2568)
|
T Consensus 82 P 82 (84)
T d1ud0a_ 82 P 82 (84)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.7e-12 Score=141.87 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=101.8
Q ss_pred cCcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q psy7639 1556 KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAE 1635 (2568)
Q Consensus 1556 ~~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E 1635 (2568)
....++||+|+||||+|+++++ .+ ...+....|+..+||.+|++.+++++...+... .......+
T Consensus 4 ~e~~~ilViDiGggTtDi~v~~--~~-~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~-------~~~~~~~~----- 68 (163)
T d2zgya2 4 DELDSLLIIDLGGTTLDISQVM--GK-LSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-------SSYLADDI----- 68 (163)
T ss_dssp CTTCEEEEEEECSSCEEEEEEE--GG-GCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG-------GHHHHHHH-----
T ss_pred CCCCCEEEEECCCCcEEEEEEc--CC-eEEEEEeeccccccchHHHHHHHHhhHHhhchh-------hhhhHHHH-----
Confidence 3456899999999999999987 33 445666777788999999999998854321111 11111111
Q ss_pred HhhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHH
Q psy7639 1636 RAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715 (2568)
Q Consensus 1636 ~aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~ 1715 (2568)
++.... . .+..........++.+++++.+.++.+.+.+.+.+. ...+++.|+|+||+|+ ++++
T Consensus 69 -~~~~~~---~-------~~~~~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~GGGs~--ll~~ 131 (163)
T d2zgya2 69 -IIHRKD---N-------NYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVIGGGAE--LICD 131 (163)
T ss_dssp -HHTTTC---H-------HHHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEESTTHH--HHHH
T ss_pred -HHhhcc---c-------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEECchHH--HHHH
Confidence 110000 0 000000111245556666666666666655555554 4567999999999985 5999
Q ss_pred HHHhhhcCC--cccccCCchhhhhccHHHHH
Q psy7639 1716 LLQNFFCGK--SLNLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1716 ~I~~~f~~~--~v~~~~nP~eAVA~GAai~a 1744 (2568)
.|++.|+.. ++....||..|+|.|+.++|
T Consensus 132 ~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 132 AVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 999999643 56778899999999998876
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=3.8e-11 Score=119.06 Aligned_cols=95 Identities=26% Similarity=0.428 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHH
Q psy7639 2450 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529 (2568)
Q Consensus 2450 ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee 2529 (2568)
||++||++|+++++.|+.+|+++|++++++|.+|+|||++++.|.+.+.++++++++.|+..|+++..||.++ +.+.
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~~---d~~~ 77 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAA 77 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTSS---CHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHH
Confidence 7999999999999999999999999999999999999999999999889999999999999999999999865 5889
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7639 2530 YQDKLQQLQKSCMPLMSK 2547 (2568)
Q Consensus 2530 ~~~k~~~L~~~~~pi~~r 2547 (2568)
++.++++|+..+.|+...
T Consensus 78 i~~~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 78 IEAKMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998754
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.8e-11 Score=121.52 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHH
Q psy7639 2450 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 2529 (2568)
Q Consensus 2450 ls~eei~~~~~~~~~~~~~D~~~re~~eakN~lE~~iy~~r~~L~~~~~~l~~~ek~~i~~~l~e~~~WL~~~~~a~~ee 2529 (2568)
||++||++|++++..|+.+|+++|++++++|++|++||+++++|.+.+..++++++..|+..+.++..||.++ +.+.
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~---d~~~ 77 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGD---DVDA 77 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCC---CHHH
Confidence 7999999999999999999999999999999999999999999999889999999999999999999999875 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy7639 2530 YQDKLQQLQKSCMPLMSKMHGG 2551 (2568)
Q Consensus 2530 ~~~k~~~L~~~~~pi~~r~~e~ 2551 (2568)
++..++.|+..|.||..+++..
T Consensus 78 I~~~~~~L~~~~~~~a~~~m~~ 99 (112)
T d1u00a1 78 IEQAIKNVDKQTQDFAARRMDQ 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2.6e-12 Score=141.90 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=99.8
Q ss_pred CCCCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHH
Q psy7639 759 LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAA 838 (2568)
Q Consensus 759 ~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 838 (2568)
.....++||+|+||||||+++++- + ...+....++..+||.+|++.+.+++...+... .......+
T Consensus 3 l~e~~~ilViDiGggTtDi~v~~~--~-~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~-------~~~~~~~~---- 68 (163)
T d2zgya2 3 LDELDSLLIIDLGGTTLDISQVMG--K-LSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-------SSYLADDI---- 68 (163)
T ss_dssp SCTTCEEEEEEECSSCEEEEEEEG--G-GCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG-------GHHHHHHH----
T ss_pred CCCCCCEEEEECCCCcEEEEEEcC--C-eEEEEEeeccccccchHHHHHHHHhhHHhhchh-------hhhhHHHH----
Confidence 345678999999999999999862 2 345666677889999999999987765332210 00000000
Q ss_pred HHHHHhcCCCCcceeeeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHH
Q psy7639 839 ERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 918 (2568)
Q Consensus 839 E~aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~ 918 (2568)
++. ......+. ........++++++++.+.+..+.+.+.+. .....+++.|+|+||+|+ .++
T Consensus 69 --~~~---~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~----~~~~~~~~~iil~GGGs~--ll~ 130 (163)
T d2zgya2 69 --IIH---RKDNNYLK-------QRINDENKISIVTEAMNEALRKLEQRVLNT----LNEFSGYTHVMVIGGGAE--LIC 130 (163)
T ss_dssp --HHT---TTCHHHHH-------HHSSSSCTHHHHHHHHHHHHHHHHHHHHHH----HTTCCCCCEEEEESTTHH--HHH
T ss_pred --HHh---hccccccc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHh----hccccccceEEEECchHH--HHH
Confidence 000 00000000 001112334455555555555554444444 445567999999999996 599
Q ss_pred HHHHHHhCCc--cccccCCchhHHHhhHHHHH
Q psy7639 919 SLLQNFFCGK--SLNLSINPDEAVAYGAAVQA 948 (2568)
Q Consensus 919 ~~l~~~f~~~--~v~~~~npdeaVA~GAAl~a 948 (2568)
+.|++.|+.. .+....||..|+|+|+.++|
T Consensus 131 ~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 131 DAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 9999999643 56778899999999999886
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=6.4e-11 Score=117.40 Aligned_cols=95 Identities=26% Similarity=0.428 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHH
Q psy7639 1877 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 1956 (2568)
Q Consensus 1877 ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1956 (2568)
||++||++|+++|+.|+.+|+++|+++++||.++++||+++.+|.+.+.++++++++.+...++.+..||+.+ +.+.
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~~---d~~~ 77 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAA 77 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTSS---CHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999754 7899
Q ss_pred HHHHHHHHHHhhhccccc
Q psy7639 1957 YQDKLQQLQKSCMPLMSK 1974 (2568)
Q Consensus 1957 ~~~~~~~l~~~~~~~~~~ 1974 (2568)
|+.++.+|++++.|++..
T Consensus 78 i~~~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 78 IEAKMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998653
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.3e-11 Score=118.91 Aligned_cols=76 Identities=32% Similarity=0.739 Sum_probs=70.0
Q ss_pred HhcchHHHHHHHHHHhhhcc--CCCCHhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy7639 1109 ARNNLEAYVFNVKQALDNAG--NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 1184 (2568)
Q Consensus 1109 ~~N~lE~~iy~~r~~l~~~~--~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~~~~~ 1184 (2568)
++|+||+|||.+|+.|++.. .++++++++.|.+.|+++++||++|.++++++|++|+++|+.++.||+.|+++..+
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g 79 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAG 79 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 57999999999999997543 78999999999999999999999888899999999999999999999999887655
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=3.1e-10 Score=115.38 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcCCccCHHH
Q psy7639 1877 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 1956 (2568)
Q Consensus 1877 ls~eei~~~~~~~~~~~~~d~~~~~~~~~rn~le~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1956 (2568)
||++||++|+++++.|+.+|+.+|+.+++||.+++++|+++.+|.+.+++++++++..+...++++.+||+.+ +.+.
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~---d~~~ 77 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGD---DVDA 77 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCC---CHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999864 7899
Q ss_pred HHHHHHHHHHhhhcccccccC
Q psy7639 1957 YQDKLQQLQKSCMPLMSKMHG 1977 (2568)
Q Consensus 1957 ~~~~~~~l~~~~~~~~~~~y~ 1977 (2568)
|+..+++|+.+|.|+.+++|.
T Consensus 78 I~~~~~~L~~~~~~~a~~~m~ 98 (112)
T d1u00a1 78 IEQAIKNVDKQTQDFAARRMD 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888874
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=2.7e-10 Score=128.51 Aligned_cols=157 Identities=17% Similarity=0.263 Sum_probs=109.0
Q ss_pred cceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHh
Q psy7639 1558 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERA 1637 (2568)
Q Consensus 1558 ~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~a 1637 (2568)
+..++|+|+|+||+|++++. +|..... .- -.+||.+||+.|++.+. + -..+||+.
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~--~G~l~~~---~~-i~~GG~~iT~~Ia~~l~--------i-----------~~~~AE~i 60 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYK--NGVPIKI---SY-VPVGMKHVIKDVSAVLD--------T-----------SFEESERL 60 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEE--TTEEEEE---EE-ESCCHHHHHHHHHHHHT--------C-----------CHHHHHHH
T ss_pred hCCEEEEEeCCCcEEEEEEE--CCeEEEE---EE-EeeChHHHHHHHHHHhc--------c-----------cHHHHHHH
Confidence 45689999999999999998 7743222 22 23799999999987642 1 13478888
Q ss_pred hcccCC-----CCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCC------CCccccEEEEecC
Q psy7639 1638 KRTLSS-----STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKL------DKSAIHDVVLVGG 1706 (2568)
Q Consensus 1638 K~~Ls~-----~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~------~~~~Id~ViLVGG 1706 (2568)
|+.... .....+.+.. .+......+++..+.+++++.+++++..+.+.++.... ...-+..|+|+||
T Consensus 61 K~~~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGG 138 (191)
T d1e4ft2 61 IITHGNAVYNDLKEEEIQYRG--LDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGG 138 (191)
T ss_dssp HHHHCCSCCTTCCCCEEEEEC--TTSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESG
T ss_pred Hhhccccccccccchhccccc--ccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecc
Confidence 886542 2222333322 22233446889999999999999999998888875411 1122456999999
Q ss_pred ccCChhHHHHHHhhhcCCcccc-----------------cCCchhhhhccHHH
Q psy7639 1707 STRIPKVQSLLQNFFCGKSLNL-----------------SINPDEAVAYGAAV 1742 (2568)
Q Consensus 1707 ssr~P~V~~~I~~~f~~~~v~~-----------------~~nP~eAVA~GAai 1742 (2568)
+|++|.+.+++++.|+ .+++. ..+|..++|+|.++
T Consensus 139 gs~l~gl~~~l~~~l~-~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 139 GAKIPRINELATEVFK-SPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GGGSTTHHHHHHHHHC-SCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHC-CCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 9999999999999995 33321 12567778887764
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=6.9e-10 Score=125.14 Aligned_cols=159 Identities=17% Similarity=0.235 Sum_probs=110.6
Q ss_pred CceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q psy7639 762 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERA 841 (2568)
Q Consensus 762 ~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~a 841 (2568)
+..++|+|+|+||+|++++. +|...... ...+||++|++.|...+.-. ..+||+.
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~--~G~l~~~~----~i~~GG~~iT~~Ia~~l~i~-------------------~~~AE~i 60 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYK--NGVPIKIS----YVPVGMKHVIKDVSAVLDTS-------------------FEESERL 60 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEE--TTEEEEEE----EESCCHHHHHHHHHHHHTCC-------------------HHHHHHH
T ss_pred hCCEEEEEeCCCcEEEEEEE--CCeEEEEE----EEeeChHHHHHHHHHHhccc-------------------HHHHHHH
Confidence 45699999999999999976 45322222 24689999999988765311 3478999
Q ss_pred HHhcCCCC---cceeeeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCc------cCcCeEEEEcCCC
Q psy7639 842 KRTLSSST---EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDK------SAIHDVVLVGGST 912 (2568)
Q Consensus 842 K~~LS~~~---~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~------~~I~~ViLvGGss 912 (2568)
|+.+.... .....++....+......+++..+.+++.+.++++...+++.++...... ..+..|+|+||+|
T Consensus 61 K~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs 140 (191)
T d1e4ft2 61 IITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGA 140 (191)
T ss_dssp HHHHCCSCCTTCCCCEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGG
T ss_pred HhhccccccccccchhcccccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchh
Confidence 99765321 11112222222233445789999999999999999999888887543221 1245699999999
Q ss_pred CcHHHHHHHHHHhCCccccc-----------------cCCchhHHHhhHHH
Q psy7639 913 RIPKVQSLLQNFFCGKSLNL-----------------SINPDEAVAYGAAV 946 (2568)
Q Consensus 913 riP~v~~~l~~~f~~~~v~~-----------------~~npdeaVA~GAAl 946 (2568)
++|.+.+.+++.|+ .++.. ..+|..++|.|.++
T Consensus 141 ~l~gl~~~l~~~l~-~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 141 KIPRINELATEVFK-SPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GSTTHHHHHHHHHC-SCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred hhhhHHHHHHHHHC-CCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 99999999999995 33311 12577888888875
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.85 E-value=2.6e-09 Score=117.08 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=101.1
Q ss_pred CcceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH
Q psy7639 1557 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAER 1636 (2568)
Q Consensus 1557 ~~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~ 1636 (2568)
++.++||+|+||||+|++++...+. .+ +...++....|+.+++..+++++..++ +.... .. ..+.
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~-~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~----~~~~~--~~-------~~~~ 68 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDM-EP-VVELSFSLQIGVGDAISALSRKIAKET----GFVVP--FD-------LAQE 68 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTT-EE-CGGGCEEESCCHHHHHHHHHHHHHHHH----CCCCC--HH-------HHHH
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCe-EE-EEEEeccHhHHHHHHHHHHHHHHHHHH----Hhhhh--HH-------HHHH
Confidence 4567999999999999999984333 22 333344456899999999988866544 43331 11 1111
Q ss_pred hhcccCCCCeeEEEEccccCCcceeeecCHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHH
Q psy7639 1637 AKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716 (2568)
Q Consensus 1637 aK~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~fe~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~ 1716 (2568)
.... ...+ .+... --++.+.+.++++++.+...+.+.+... ...++.|+|+||+|.+ +++.
T Consensus 69 ~~~~-------~~~~----~g~~~---~~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga~l--l~~~ 129 (161)
T d2fsja1 69 ALSH-------PVMF----RQKQV---GGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IGDR 129 (161)
T ss_dssp HTTS-------CEEE----TTEEE---CSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HGGG
T ss_pred HHhc-------cccc----ccccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHHHH--HHHH
Confidence 1110 0111 12111 1245677777778888877777777542 3568999999999987 7899
Q ss_pred HHhhhcCCcc-cccCCchhhhhccHHHHH
Q psy7639 1717 LQNFFCGKSL-NLSINPDEAVAYGAAVQA 1744 (2568)
Q Consensus 1717 I~~~f~~~~v-~~~~nP~eAVA~GAai~a 1744 (2568)
+++.|+...+ ..+.||..|+|.|--..|
T Consensus 130 l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 130 FEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp GGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 9999965433 345699999999976555
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.76 E-value=3.2e-09 Score=116.34 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=99.8
Q ss_pred CCceEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q psy7639 761 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAER 840 (2568)
Q Consensus 761 ~~~~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~ 840 (2568)
++.++||+|+||||||++++...+. . -+....+....|+.+++..|.+++..++. .... ... .+.
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~-~-~~~~~~~~~~~g~~~i~~~i~~~i~~~~~----~~~~--~~~-------~~~ 68 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDM-E-PVVELSFSLQIGVGDAISALSRKIAKETG----FVVP--FDL-------AQE 68 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTT-E-ECGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCC--HHH-------HHH
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCe-E-EEEEEeccHhHHHHHHHHHHHHHHHHHHH----hhhh--HHH-------HHH
Confidence 4678999999999999999975433 1 23333344678999999988877766553 3221 111 111
Q ss_pred HHHhcCCCCcceeeeccccCCcceEEecchHhHHHHHHHHHHhHHHHHHHHHHHccCCccCcCeEEEEcCCCCcHHHHHH
Q psy7639 841 AKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 920 (2568)
Q Consensus 841 aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGGssriP~v~~~ 920 (2568)
+. .. . ... .+.. .. .++.+.+.++++++.+...+...+.. ..+.++.|+|+||+|.+ +++.
T Consensus 69 ~~---~~--~--~~~----~g~~--~~-~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~GGga~l--l~~~ 129 (161)
T d2fsja1 69 AL---SH--P--VMF----RQKQ--VG-GPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDR 129 (161)
T ss_dssp HT---TS--C--EEE----TTEE--EC-SHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEESTTHHH--HGGG
T ss_pred HH---hc--c--ccc----cccc--ch-HHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEECCHHHH--HHHH
Confidence 11 11 1 111 1111 11 24556666777777777777666643 34568999999999987 7899
Q ss_pred HHHHhCCccc-cccCCchhHHHhhHHHHH
Q psy7639 921 LQNFFCGKSL-NLSINPDEAVAYGAAVQA 948 (2568)
Q Consensus 921 l~~~f~~~~v-~~~~npdeaVA~GAAl~a 948 (2568)
+++.|+...+ ..+.||..|+|+|--..|
T Consensus 130 l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 130 FEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp GGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 9999976544 345799999999987665
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.18 E-value=0.0014 Score=67.17 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=92.5
Q ss_pred cceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHh
Q psy7639 1558 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERA 1637 (2568)
Q Consensus 1558 ~~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~a 1637 (2568)
+..+.|+|+|||++|.|++.- +|.+ .+..- ...|+-++..+...| +.+ . +.-+|..
T Consensus 3 ~~PlAIlDlGaGStDAsii~~-~g~v---~a~Hl--AGAG~mVTmlI~seL--------Gl~----d------~~lAE~I 58 (203)
T d2d0oa3 3 TRPLAILDLGAGSTDASIINP-KGDI---IATHL--AGAGDMVTMIIAREL--------GLE----D------RYLAEEI 58 (203)
T ss_dssp CSSEEEEEECSSEEEEEEECT-TCCE---EEEEE--ECSHHHHHHHHHHHH--------TCC----C------HHHHHHH
T ss_pred CCceEEEEcCCCcccHHHhCC-CCcE---EEEEe--cCcchHhHHHHHHhh--------CCC----c------HHHHHHH
Confidence 345899999999999999985 5633 33221 124777777765543 222 1 1245666
Q ss_pred hcccCCCCee--EEEE-----cccc----------------CC-cceeeecCHHHHHHHHhHHHHHHH-HHHHHHHHHc-
Q psy7639 1638 KRTLSSSTEA--SIEI-----DALY----------------DG-IDFYTKISRARFEELCSDLFRSTL-QPVEKALQDA- 1691 (2568)
Q Consensus 1638 K~~Ls~~~~~--~i~i-----~~~~----------------~~-~~~~~~itr~~fe~l~~pli~~i~-~~i~~~L~~a- 1691 (2568)
|+.--.+-+. .+.- .++. ++ ..+.-.++-++...+=+..-++.. ..+-++|+.-
T Consensus 59 KkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~vs 138 (203)
T d2d0oa3 59 KKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVS 138 (203)
T ss_dssp HHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhcchhhhccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence 6432110000 0000 0000 00 111223555555554444434332 3445666654
Q ss_pred -CCCCccccEEEEecCccCChhHHHHHHhhhcCC-------cccccCCchhhhhccHHHH
Q psy7639 1692 -KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQ 1743 (2568)
Q Consensus 1692 -~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~-------~v~~~~nP~eAVA~GAai~ 1743 (2568)
.-+..+|..|+|||||+.=--+-+++.+.+..- .++-.--|..|||.|.++.
T Consensus 139 P~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 139 PTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp SSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred CCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 334568999999999999888889998887432 3344557999999998754
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.09 E-value=0.0016 Score=66.96 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=92.3
Q ss_pred ceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhh
Q psy7639 1559 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAK 1638 (2568)
Q Consensus 1559 ~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK 1638 (2568)
..+.|+|+||||+|.|++.- +|.+.-+. -.| .|+-++..+...| +.+. +.-+|..|
T Consensus 4 ~plaIlDlG~GStDasii~~-~g~v~avh-lAG----AG~mVTmlI~~eL--------Gl~d----------~~lAE~IK 59 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNA-EGQITAVH-LAG----AGNMVSLLIKTEL--------GLED----------LSLAEAIK 59 (202)
T ss_dssp SSEEEEEECSSEEEEEEECS-SSCEEEEE-EEC----CHHHHHHHHHHHH--------TCSC----------HHHHHHHH
T ss_pred CceEEEEcCCCccchhhccC-CCcEEEEE-ecC----CchhhHHHHHHHh--------CCCc----------HHHHHHHh
Confidence 45799999999999999985 56332221 122 4777777776553 2221 12456666
Q ss_pred cccCCCCeeE--EEE-----cccc---------------C-C-cceeeecCHHHHHHHHhHHHHHHH-HHHHHHHHHcC-
Q psy7639 1639 RTLSSSTEAS--IEI-----DALY---------------D-G-IDFYTKISRARFEELCSDLFRSTL-QPVEKALQDAK- 1692 (2568)
Q Consensus 1639 ~~Ls~~~~~~--i~i-----~~~~---------------~-~-~~~~~~itr~~fe~l~~pli~~i~-~~i~~~L~~a~- 1692 (2568)
+.--.+-+.- +.- .++. . + ..+.-.++-++...+=...-++.. ..+.++|+.-.
T Consensus 60 kyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp 139 (202)
T d1nbwa3 60 KYPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSP 139 (202)
T ss_dssp HSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSST
T ss_pred hcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCC
Confidence 4321110000 000 0000 0 0 112223566666555544444433 34556666542
Q ss_pred -CCCccccEEEEecCccCChhHHHHHHhhhcC-------CcccccCCchhhhhccHHHH
Q psy7639 1693 -LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSINPDEAVAYGAAVQ 1743 (2568)
Q Consensus 1693 -~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~-------~~v~~~~nP~eAVA~GAai~ 1743 (2568)
-+..+|..|+|||||+.=--+-+++.+.+.. ..++-..-|..|||.|.++-
T Consensus 140 ~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 140 GGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp TCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 2346899999999999988888888887732 23444557999999998753
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.06 E-value=0.0011 Score=77.06 Aligned_cols=176 Identities=17% Similarity=0.177 Sum_probs=99.9
Q ss_pred eEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCC--CHHHHHHHHH-----
Q psy7639 191 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRT----- 263 (2568)
Q Consensus 191 ~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~--~~~~~~~L~~----- 263 (2568)
+=+|+|+|++.|+++-+- +|. .+........+||.+++..|.++|.++ +.+... +......+..
T Consensus 4 TGlVVDiG~~~T~v~PV~--eG~--~l~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~~~~~~~~ke~~~~v 74 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVA--EGY--VIGSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQSLETAKAVKERYSYV 74 (258)
T ss_dssp CEEEEEESSSCEEEEEEE--TTE--ECGGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGHHHHHHHHHHHHCCC
T ss_pred EEEEEEcCCCcEEEEEEE--CCE--EchhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHHHHHHHhHHhhhccc
Confidence 359999999999998763 341 222222235789999999888776432 111111 1111111111
Q ss_pred ------HHHHHHHhcCCCCceEEEEeeeccCcceEEeecHHHH---HHHHhhh------hhhhHHHHHHHHHHcCCCCCC
Q psy7639 264 ------AAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARF---EELCSDL------FRSTLQPVEKALQDAKLDKSA 328 (2568)
Q Consensus 264 ------~aE~aK~~LS~~~~~~i~i~~l~~~~d~~~~itR~ef---e~l~~~l------~~~i~~~i~~~l~~a~~~~~~ 328 (2568)
..++.+..-+. .......+.........+.+..+.| |-++.|- ...+.+.|.+++..+......
T Consensus 75 ~~d~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~ 153 (258)
T d1k8ka2 75 CPDLVKEFNKYDTDGSK-WIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRR 153 (258)
T ss_dssp CSCHHHHHHHHHHSGGG-TCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTT
T ss_pred ccchHHHHHhhcccccc-cccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhH
Confidence 11111111111 1122333322333445567777776 3333332 234678888888887654333
Q ss_pred --CCeEEEcCCccchHHHHHHHHHHhCC-----------------------CcccccCCchhHHHhhHHHHHH
Q psy7639 329 --IHDVVLVGGSTRIPKVQSLLQNFFCG-----------------------KSLNLSINPDEAVAYGAAVQAA 376 (2568)
Q Consensus 329 --i~~ViLvGG~sriP~v~~~l~~~f~~-----------------------~~v~~~~npdeaVA~GAa~~aa 376 (2568)
...|+|+||+|.+|.+.++|...+.. ..+..+.++..++=.||+++|.
T Consensus 154 ~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 154 PLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp HHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 67899999999999999988766510 1223344667788889988875
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.02 E-value=0.0011 Score=75.46 Aligned_cols=173 Identities=23% Similarity=0.281 Sum_probs=100.3
Q ss_pred eEEEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCH--HHHHHHHH-----
Q psy7639 191 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNP--RALRRLRT----- 263 (2568)
Q Consensus 191 ~vlV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~--~~~~~L~~----- 263 (2568)
+=||+|+|++.+.++-+- +|. .+........+||.++++.|.++|..+- .+..... .....+..
T Consensus 3 TglVVDiG~~~t~v~PV~--eG~--~l~~~~~~~~~GG~~lt~~l~~~L~~~~-----~~~~~~~~~~~~~~~ke~~~~~ 73 (225)
T d2fxua2 3 TGIVLDSGDGVTHNVPIY--EGY--ALPHAIMRLDLAGRDLTDYLMKILTERG-----YSFVTTAEREIVRDIKEKLCYV 73 (225)
T ss_dssp SEEEEEECSSCEEEEEEE--TTE--ECGGGCEEESCCHHHHHHHHHHHHHHHT-----CCCCSHHHHHHHHHHHHHHCCC
T ss_pred EEEEEEcCCCcEEEEEEE--CCE--EchhceEEEECcHHHHHHHHHHHHhhcc-----CCcCCHHHHHHHHHHHHHHhhc
Confidence 358999999999888763 341 2222223357999999998888775432 1111111 11111111
Q ss_pred ----HHHHHHHhcCCCCceEEEEeeeccCcceEEeecHHHH---HHHHhhh-----hhhhHHHHHHHHHHcCCC--CCCC
Q psy7639 264 ----AAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARF---EELCSDL-----FRSTLQPVEKALQDAKLD--KSAI 329 (2568)
Q Consensus 264 ----~aE~aK~~LS~~~~~~i~i~~l~~~~d~~~~itR~ef---e~l~~~l-----~~~i~~~i~~~l~~a~~~--~~~i 329 (2568)
..|..+...+........ +.++. .+.+..+.| |-++.|. ...+.+.|.+++..+..+ +.-.
T Consensus 74 ~~d~~~e~~~~~~~~~~~~~~~---lpdg~--~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~ 148 (225)
T d2fxua2 74 ALDFENEMATAASSSSLEKSYE---LPDGQ--VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLY 148 (225)
T ss_dssp CSSHHHHHHHHHHCSTTCEEEE---CTTSC--EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHH
T ss_pred ccchhHHHhhcccCcccceeEE---CCCCC--EEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhh
Confidence 122223222332233332 23443 345665555 3344442 124667777777765432 1125
Q ss_pred CeEEEcCCccchHHHHHHHHHHhC-------CCcccccCCchhHHHhhHHHHHHH
Q psy7639 330 HDVVLVGGSTRIPKVQSLLQNFFC-------GKSLNLSINPDEAVAYGAAVQAAI 377 (2568)
Q Consensus 330 ~~ViLvGG~sriP~v~~~l~~~f~-------~~~v~~~~npdeaVA~GAa~~aa~ 377 (2568)
..|+|+||+|.+|.+.++|+..+. ...+..+.++..++=.||+++|..
T Consensus 149 ~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 149 ANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp TCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred cCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 799999999999999999997661 123344557778999999998863
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.95 E-value=0.0013 Score=74.84 Aligned_cols=171 Identities=23% Similarity=0.311 Sum_probs=94.7
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHH---HHHHHHH----
Q psy7639 764 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPR---ALRRLRT---- 836 (2568)
Q Consensus 764 ~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~---~~~~L~~---- 836 (2568)
+-||+|+|++.+.|+-+- +| +-+........+||.++++.|.+.|...- .... ... ....+..
T Consensus 3 TglVVDiG~~~t~v~PV~--eG--~~l~~~~~~~~~GG~~lt~~l~~~L~~~~-----~~~~-~~~~~~~~~~~ke~~~~ 72 (225)
T d2fxua2 3 TGIVLDSGDGVTHNVPIY--EG--YALPHAIMRLDLAGRDLTDYLMKILTERG-----YSFV-TTAEREIVRDIKEKLCY 72 (225)
T ss_dssp SEEEEEECSSCEEEEEEE--TT--EECGGGCEEESCCHHHHHHHHHHHHHHHT-----CCCC-SHHHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCcEEEEEEE--CC--EEchhceEEEECcHHHHHHHHHHHHhhcc-----CCcC-CHHHHHHHHHHHHHHhh
Confidence 359999999999887664 56 22333333457999999998888775421 1111 111 1111111
Q ss_pred -----HHHHHHHhcCCCCcceeeeccccCCcceEEecchHhHHHHHHHHHH---------hHHHHHHHHHHHccCC--cc
Q psy7639 837 -----AAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFR---------STLQPVEKALQDAKLD--KS 900 (2568)
Q Consensus 837 -----~~E~aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~---------~i~~~i~~~L~~a~~~--~~ 900 (2568)
..|..+...+........ +.++. .+.+..+.|. ..+.+|+ .+.+.|.+++..+..+ +.
T Consensus 73 ~~~d~~~e~~~~~~~~~~~~~~~---lpdg~--~i~i~~er~~-~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~ 146 (225)
T d2fxua2 73 VALDFENEMATAASSSSLEKSYE---LPDGQ--VITIGNERFR-CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKD 146 (225)
T ss_dssp CCSSHHHHHHHHHHCSTTCEEEE---CTTSC--EEEESTHHHH-HHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHH
T ss_pred cccchhHHHhhcccCcccceeEE---CCCCC--EEEEchHhcc-ccHhhcCccccCCccCChhHHHHHHhhcCCcchhhh
Confidence 112222222222222222 23333 3344544432 2222332 2455566666544322 11
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhC-------CccccccCCchhHHHhhHHHHHHH
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFC-------GKSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~-------~~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
-...|+|+||+|.+|.+.++|...+. ...+..+.++..++=+||+++|..
T Consensus 147 l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 147 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred hhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 25689999999999999999987541 123344557778889999999864
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.81 E-value=0.0019 Score=75.05 Aligned_cols=173 Identities=18% Similarity=0.191 Sum_probs=95.6
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q psy7639 764 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR 843 (2568)
Q Consensus 764 ~vlV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK~ 843 (2568)
+=+|+|+|++.++|+-+- +| +-+.....-..+||.+++..|.++|.+. +........ ...++..|.
T Consensus 4 TGlVVDiG~~~T~v~PV~--eG--~~l~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~-----~~~~~~~ke 69 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVA--EG--YVIGSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQS-----LETAKAVKE 69 (258)
T ss_dssp CEEEEEESSSCEEEEEEE--TT--EECGGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGH-----HHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEE--CC--EEchhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHH-----HHHHHhHHh
Confidence 459999999999888764 45 2222223336799999999888776531 111111000 011222222
Q ss_pred hcCC----------------C-CcceeeeccccCCcceEEecchHhHH---HHHHHH------HHhHHHHHHHHHHHccC
Q psy7639 844 TLSS----------------S-TEASIEIDALYDGIDFYTKISRARFE---ELCSDL------FRSTLQPVEKALQDAKL 897 (2568)
Q Consensus 844 ~LS~----------------~-~~~~i~i~~l~~~~d~~~~itr~efe---~l~~~l------~~~i~~~i~~~L~~a~~ 897 (2568)
.+.. . .......+.........+.+..+.|. -++.|- ...+.+.|.+++..+..
T Consensus 70 ~~~~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~ 149 (258)
T d1k8ka2 70 RYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPI 149 (258)
T ss_dssp HHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCG
T ss_pred hhcccccchHHHHHhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccH
Confidence 2211 0 01112222222233445666666652 122221 12356677777776654
Q ss_pred CccC--cCeEEEEcCCCCcHHHHHHHHHHhCC-----------------------ccccccCCchhHHHhhHHHHHHH
Q psy7639 898 DKSA--IHDVVLVGGSTRIPKVQSLLQNFFCG-----------------------KSLNLSINPDEAVAYGAAVQAAI 950 (2568)
Q Consensus 898 ~~~~--I~~ViLvGGssriP~v~~~l~~~f~~-----------------------~~v~~~~npdeaVA~GAAl~aa~ 950 (2568)
+... ...|+|+||+|.+|.+.++|.+.+.. ..+..+.++..++=+||+++|..
T Consensus 150 d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~l 227 (258)
T d1k8ka2 150 DVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 227 (258)
T ss_dssp GGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHcC
Confidence 3322 57799999999999999988655511 12223345667888899888753
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.78 E-value=0.003 Score=72.83 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=54.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHHHHHHH
Q psy7639 1671 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1747 (2568)
Q Consensus 1671 ~l~~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai~a~~l 1747 (2568)
+++...++.+...+...+... .+.+.|+++||.++.|.+++.+++.+ +.++..+.+|+.+.|+|||++|.-.
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l-~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 185 DIIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHH-CCCEEcCCCccHHHHHHHHHHHHHH
Confidence 344444455555554555433 23456999999999999999999999 6778888899999999999999643
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.75 E-value=0.018 Score=66.02 Aligned_cols=72 Identities=24% Similarity=0.235 Sum_probs=54.7
Q ss_pred HHhHHHHHHhhHHHHHHHHHcCCCccCcceEEEecCccChHHHHHHHHHhcCCCCCCCCCCcchhHHhhHHHHHHHh
Q psy7639 2244 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 2320 (2568)
Q Consensus 2244 ~l~~~l~~~~~~~~~~~l~~a~~~~~~i~~vilvGGstriP~v~~~l~~~f~~~~~~~~~npdeava~GAa~~aa~l 2320 (2568)
+++..++......+...+.. ..+.+.|++.||.++.|.+++.+++.+ +.++...-+|+++.|+|||++|..-
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~----~~~~~~Iv~gGGv~~~~~~~~~l~~~l-~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 185 DIIAGIHRSVASRVIGLANR----VGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TCCCSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccCCCcEEEEccccccHHHHHHHHHHH-CCCEEcCCCccHHHHHHHHHHHHHH
Confidence 44444555444444444432 245677999999999999999999999 6778788899999999999998743
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.74 E-value=0.0053 Score=63.02 Aligned_cols=60 Identities=27% Similarity=0.293 Sum_probs=43.8
Q ss_pred HHHHHHHccCC--ccCcCeEEEEcCCCCcHHHHHHHHHHhCC-------ccccccCCchhHHHhhHHHH
Q psy7639 888 VEKALQDAKLD--KSAIHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSINPDEAVAYGAAVQ 947 (2568)
Q Consensus 888 i~~~L~~a~~~--~~~I~~ViLvGGssriP~v~~~l~~~f~~-------~~v~~~~npdeaVA~GAAl~ 947 (2568)
+.++|++.... ..+|..|+|||||+.=--|-+++.+.+.. ..+.-..-|..|||.|.++.
T Consensus 130 a~RaL~~vsp~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 130 CLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp HHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred HHHHHhhcCCCCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 45566554433 35799999999999988888888877732 24455667999999998763
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=96.54 E-value=0.0094 Score=60.99 Aligned_cols=60 Identities=30% Similarity=0.300 Sum_probs=45.0
Q ss_pred HHHHHHHcc--CCccCcCeEEEEcCCCCcHHHHHHHHHHhCCc-------cccccCCchhHHHhhHHHH
Q psy7639 888 VEKALQDAK--LDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQ 947 (2568)
Q Consensus 888 i~~~L~~a~--~~~~~I~~ViLvGGssriP~v~~~l~~~f~~~-------~v~~~~npdeaVA~GAAl~ 947 (2568)
+.++|+... -+..+|..|+|||||+.=--|-+++.+.+..- .+.-..-|..|||.|.++.
T Consensus 130 a~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 130 ALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp HHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 445565543 23457999999999999988999999888433 3444567899999998764
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.41 E-value=0.0041 Score=68.47 Aligned_cols=147 Identities=24% Similarity=0.330 Sum_probs=84.5
Q ss_pred EEEEeCCcceEEEEeeecCCcEEEEEeecccccccccchHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHH---------
Q psy7639 193 LIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRT--------- 263 (2568)
Q Consensus 193 lV~D~GggT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~--------- 263 (2568)
||+|+|++.|.++-+- +|. .+........+||.++++.|.+.+.+.- +.............+..
T Consensus 2 lVVDiG~~~T~v~PV~--dG~--~l~~a~~~~~igG~~lt~~l~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~v~~~~ 74 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGF--SLPHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSADFETVRMIKEKLCYVGYNI 74 (190)
T ss_dssp CEEEECSSCEEEECEE--TTE--ECSTTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTTHHHHHHHHHHHCCCCSSH
T ss_pred EEEEcCCCcEEEEEeE--CCE--EcccceEEEeccHHHHHHHHHHHHHhcC---CcccchHHHHHHHHHHhhhhhhcccH
Confidence 6999999999887652 341 2222222356899999998877764321 11111111112222211
Q ss_pred HHHHHHHhcCCCCceEEEEeeeccCcceEEeecHHHHHHHHhhhhh---------hhHHHHHHHHHHcCCCCCC--CCeE
Q psy7639 264 AAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFR---------STLQPVEKALQDAKLDKSA--IHDV 332 (2568)
Q Consensus 264 ~aE~aK~~LS~~~~~~i~i~~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i~~~l~~a~~~~~~--i~~V 332 (2568)
..+..+...+........ +.++. .+.+..+.|. ..+.+|+ .+...|.+++..+..+... ...|
T Consensus 75 ~~e~~~~~~~~~~~~~~~---lpdg~--~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NI 148 (190)
T d1k8kb1 75 EQEQKLALETTVLVESYT---LPDGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 148 (190)
T ss_dssp HHHHHHHHHCSTTCEEEE---CTTSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTC
T ss_pred HHHHHhhhcccceeeeee---cCCCc--EEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCE
Confidence 112222222332323332 23443 3566776664 2233333 3778889999888654322 7899
Q ss_pred EEcCCccchHHHHHHHHHHh
Q psy7639 333 VLVGGSTRIPKVQSLLQNFF 352 (2568)
Q Consensus 333 iLvGG~sriP~v~~~l~~~f 352 (2568)
+|+||+|.+|.+.++|+..+
T Consensus 149 vl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 149 VLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp EEESGGGCSTTHHHHHHHHH
T ss_pred EEECcccCCCCHHHHHHHHH
Confidence 99999999999999998876
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.21 E-value=0.0053 Score=67.55 Aligned_cols=147 Identities=24% Similarity=0.359 Sum_probs=79.5
Q ss_pred EEEEeCCceeEEEEEEEcCCcEEEEEeeccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHH--------
Q psy7639 766 LIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTA-------- 837 (2568)
Q Consensus 766 lV~D~GgGT~Dvsv~~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~-------- 837 (2568)
||+|+|++.+.|+-+- +| +.+........+||.++++.|.+.+.+. .+......+......+...
T Consensus 2 lVVDiG~~~T~v~PV~--dG--~~l~~a~~~~~igG~~lt~~l~~~l~~~---~~~~~~~~~~~~~~~i~~~~~~v~~~~ 74 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EG--FSLPHLTRRLDIAGRDITRYLIKLLLLR---GYAFNHSADFETVRMIKEKLCYVGYNI 74 (190)
T ss_dssp CEEEECSSCEEEECEE--TT--EECSTTCEEESCCHHHHHHHHHHHHHHT---TCCCCTTTTHHHHHHHHHHHCCCCSSH
T ss_pred EEEEcCCCcEEEEEeE--CC--EEcccceEEEeccHHHHHHHHHHHHHhc---CCcccchHHHHHHHHHHhhhhhhcccH
Confidence 6999999999877553 45 2222223335799999999887766431 1111111111111111111
Q ss_pred -HHHHHHhcCCCCcceeeeccccCCcceEEecchHhHHHHHHHHHH---------hHHHHHHHHHHHccCCccC--cCeE
Q psy7639 838 -AERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFR---------STLQPVEKALQDAKLDKSA--IHDV 905 (2568)
Q Consensus 838 -~E~aK~~LS~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~l~~---------~i~~~i~~~L~~a~~~~~~--I~~V 905 (2568)
.+..+...+........ +.++. .+.+..+.|. ..+.+|+ .+.+.|.+++..+..+... ...|
T Consensus 75 ~~e~~~~~~~~~~~~~~~---lpdg~--~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NI 148 (190)
T d1k8kb1 75 EQEQKLALETTVLVESYT---LPDGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 148 (190)
T ss_dssp HHHHHHHHHCSTTCEEEE---CTTSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTC
T ss_pred HHHHHhhhcccceeeeee---cCCCc--EEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCE
Confidence 11112222222222222 22333 3455555543 2233333 2566777777766543222 6789
Q ss_pred EEEcCCCCcHHHHHHHHHHh
Q psy7639 906 VLVGGSTRIPKVQSLLQNFF 925 (2568)
Q Consensus 906 iLvGGssriP~v~~~l~~~f 925 (2568)
+|+||+|.+|.+.++|+..+
T Consensus 149 vl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 149 VLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp EEESGGGCSTTHHHHHHHHH
T ss_pred EEECcccCCCCHHHHHHHHH
Confidence 99999999999999998765
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.57 Score=51.38 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=81.5
Q ss_pred ceEEEEEeCCcceEEEEEEecCCcEEEEEEecCCCCCChhHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhh
Q psy7639 1559 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAK 1638 (2568)
Q Consensus 1559 ~~vlV~D~GGGT~Dvsi~~~~~g~~~ev~~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~aK 1638 (2568)
--+|++-+|+|| |++.+++...++.+...+ .||..||... +.|.. ..+...+ .+.|++-.
T Consensus 27 fP~llv~iGsGt---sii~v~~~~~~~~iggT~---~gGgtf~gla-~lLlg----------~~~~~eI---~klA~~G~ 86 (212)
T d2i7na2 27 YPMLLVNMGSGV---SILAVYSKDNYKRVTGTS---LGGGTFLGLC-CLLTG----------CETFEEA---LEMAAKGD 86 (212)
T ss_dssp CSEEEEEESSSE---EEEEEEETTEEEEEEEES---CSHHHHHHHH-HHHHC----------CCSHHHH---HHHHHHCC
T ss_pred CCEEEEECCCCe---EEEEEecCCceEEecCCc---ccHHHHHHHH-HHhcC----------CCCHHHH---HHHHhcCC
Confidence 458999999996 566665433667776665 8999999654 33221 1122222 22222221
Q ss_pred cccCCCCeeEEEEccccCC------cc---------------eeeecCHHHHHHHHhHHHH----HHHHHHHHHHHHcCC
Q psy7639 1639 RTLSSSTEASIEIDALYDG------ID---------------FYTKISRARFEELCSDLFR----STLQPVEKALQDAKL 1693 (2568)
Q Consensus 1639 ~~Ls~~~~~~i~i~~~~~~------~~---------------~~~~itr~~fe~l~~pli~----~i~~~i~~~L~~a~~ 1693 (2568)
.. ..++.++..+++ .. ..-.++++ +++..+.+ -+...+..+.+..+
T Consensus 87 ~~-----~~dl~~~di~~~~~s~sgL~t~~~a~~fgk~~~~~~~~~~~~~---DiaaS~q~~v~~~l~~~a~~aa~~~~- 157 (212)
T d2i7na2 87 ST-----NVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKE---DLARATLVTITNNIGSIARMCALNEN- 157 (212)
T ss_dssp GG-----GTSEEHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHHTTCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cc-----ccCccCCCcCCCCCCcccCCHHHHHHHhhhhhhccccccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 11 111112111110 00 00113333 44444443 33344444444444
Q ss_pred CCccccEEEEecCccCChhHHHHHHh----hhc--CCcccccCCchhhhhccHHHH
Q psy7639 1694 DKSAIHDVVLVGGSTRIPKVQSLLQN----FFC--GKSLNLSINPDEAVAYGAAVQ 1743 (2568)
Q Consensus 1694 ~~~~Id~ViLVGGssr~P~V~~~I~~----~f~--~~~v~~~~nP~eAVA~GAai~ 1743 (2568)
++.|+++||.+..-.+++.+.+ ++. +-++.++.+...+-|+||.+.
T Consensus 158 ----~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~ 209 (212)
T d2i7na2 158 ----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLE 209 (212)
T ss_dssp ----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHH
T ss_pred ----CCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHH
Confidence 5569999997777767666543 342 335666778889999999875
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=89.83 E-value=0.19 Score=56.44 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=43.9
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHhCCccccccCCchhHHHhhHHHHHHHHcCC
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 954 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~~f~~~~v~~~~npdeaVA~GAAl~aa~ls~~ 954 (2568)
.++.+.+.||.++.|.+.+.+.+.+ +.++....++ ++.++|||+.|+.-.|.
T Consensus 147 ~~~~i~~~GG~s~s~~~~Qi~Advl-g~~v~~~~~~-e~~alGaA~la~~~~G~ 198 (235)
T d1r59o2 147 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRAANL-ETTALGAAYLAGLAVGF 198 (235)
T ss_dssp CCSEEEEEESTTSCHHHHHHHHHHH-SSEEEEESCC-CTTTHHHHHHHHHHHTS
T ss_pred CCcEEEecCcchhCHHHHhhhhhcc-ceeeeecccc-chHHHHHHHHHHHHcCC
Confidence 4788999999999999999999999 5666665444 68999999999987664
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=88.97 E-value=0.37 Score=54.00 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=56.5
Q ss_pred cCHHHHHHHH-hHHHHHHHHHHHHHHHHcCCCCccccEEEEecCccCChhHHHHHHhhhcCCcccccCCchhhhhccHHH
Q psy7639 1664 ISRARFEELC-SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 1742 (2568)
Q Consensus 1664 itr~~fe~l~-~pli~~i~~~i~~~L~~a~~~~~~Id~ViLVGGssr~P~V~~~I~~~f~~~~v~~~~nP~eAVA~GAai 1742 (2568)
-+|.++-... +-+.=.+...++..-+..+.. ++.|.+.||.++.|.+.+.+.+.+ +.++.+..+ .++.|+|||+
T Consensus 116 ~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~---~~~i~~~GG~s~s~~~~Qi~Advl-g~~v~~~~~-~e~~alGaA~ 190 (235)
T d1r59o2 116 TTKEDFVRATLQAVAYQSKDVIDTMKKDSGID---IPLLKVDGGAAKNDLLMQFQADIL-DIDVQRAAN-LETTALGAAY 190 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CSEEEEEESTTSCHHHHHHHHHHH-SSEEEEESC-CCTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEecCcchhCHHHHhhhhhcc-ceeeeeccc-cchHHHHHHH
Confidence 4666654333 233333333333333344543 567999999999999999999999 566766544 4689999999
Q ss_pred HHHHHhCC
Q psy7639 1743 QAAILSGD 1750 (2568)
Q Consensus 1743 ~a~~l~~~ 1750 (2568)
.|+.-.|.
T Consensus 191 la~~~~G~ 198 (235)
T d1r59o2 191 LAGLAVGF 198 (235)
T ss_dssp HHHHHHTS
T ss_pred HHHHHcCC
Confidence 99987764
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=0.76 Score=50.30 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=36.0
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHH----HhC--CccccccCCchhHHHhhHHHHH
Q psy7639 901 AIHDVVLVGGSTRIPKVQSLLQN----FFC--GKSLNLSINPDEAVAYGAAVQA 948 (2568)
Q Consensus 901 ~I~~ViLvGGssriP~v~~~l~~----~f~--~~~v~~~~npdeaVA~GAAl~a 948 (2568)
.++.|+++||.+..-.+++.+.+ ++. +..+..+.|...+-|.||++.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 47899999998877777766643 342 4456667789999999998764
|