Psyllid ID: psy768

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
Protein Sequence
MAQDSAPDLDNLDDLLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLFIPRLNPLAQLFNVRPATPA
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHccccccccEEEcccccccccccEEEEEcccccccEEEcccccccccccEEEEEcccccccccccHcccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccEEEccccEEEEEcccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccc
Coil and Loop (DISEMBL)
maqdsapdldnlDDLLRYIghtspecletldtprnipasrssinTELEQdtigcilscdkkystclnfqitghqdkhLTRVLFHQSANHQLQVFNIRVLRcfhtsqpknalpgfiylIFKPILRVVGAIVIARISRKwwsklspdQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHletcpitgrqkfiivkpnqlndvtqiAYDNFIeehgnqvlplghpayKRVGAVVKRLIDANKVymehnnfkypitiiddplinafvfpdgrifmfTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFelpferemeteadesiifelpferemeTEADEVGLKLMARACYDVRVAPLFWQKMALKetqdqvgpkmeeylsthpshenranNLESKMKEALDIrkecnclplgplfiprlnplaqlfnvrpatpa
Flexible Loop (DISEMBL)
maqdsapdldnLDDLLRYIGHTSpecletldtprniPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFKPILRVVGAIVIARIsrkwwsklspdQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELpferemeteaDESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSthpshenranNLESKMKEALDIRKECNCLPLGPLFIPRLNPLAQLFNVRPATPA
Low Complexity Region (SEG)
MAQDSAPDLDNLDDLLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLFIPRLNPLAQLFNVRPATPA
Disordered region (IsUnstruct)
*************DLLRYIGHTSPECLE******************LEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMAL***********************************LDIRKECNCLPLGPLFIPRLNPLAQLFNV******
Disordered Region (DISOPRED)
*********DNLDDLLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTI*CILSCDKKYSTCLNFQITGHQDKHLT**********************FHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPD*********KKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIA**************LGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAE******FLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ*****************YLSTHPSHENRANNLESKMKEA***********************************
Disordered Region (DISEMBL)
MAQDSAPDLDNLDDLLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLFIPRLNPLAQLFNVRPATPA
Disordered Region (DISPRO)
******PDLDNLDDLLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQD**GPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLFIPRLNPLAQLFNVRP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQDSAPDLDNLDDLLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLFIPRLNPLAQLFNVRPATPA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	475	2.2.26 [Sep-21-2011]
D3ZS74	504	Metalloendopeptidase OMA1	yes	N/A	0.842	0.793	0.334	4e-63
Q3SZN3	523	Metalloendopeptidase OMA1	yes	N/A	0.810	0.736	0.348	1e-62
Q96E52	524	Metalloendopeptidase OMA1	yes	N/A	0.730	0.662	0.355	3e-60
Q9D8H7	521	Metalloendopeptidase OMA1	yes	N/A	0.711	0.648	0.353	6e-59
E9QBI7	478	Metalloendopeptidase OMA1	yes	N/A	0.711	0.707	0.338	6e-55
Q9P7G4	337	Mitochondrial metalloendo	yes	N/A	0.517	0.729	0.326	3e-35
P36163	345	Mitochondrial metalloendo	yes	N/A	0.543	0.747	0.288	5e-32
Q8ZCC3	486	TPR repeat-containing pro	yes	N/A	0.376	0.368	0.271	5e-12
Q9KQ40	484	TPR repeat-containing pro	no	N/A	0.389	0.382	0.246	1e-10
P66950	487	TPR repeat-containing pro	yes	N/A	0.336	0.328	0.256	5e-10

>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1

 Score =  242 bits (618), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 234/443 (52%), Gaps = 43/443 (9%)

Query: 22  TSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRV 81
           T   C   +  PRN+   R+     L+     C+ S   K    L +  T   D      
Sbjct: 51  TVSHCYSVILLPRNLHFCRT-----LKNKRSRCLSSAQSKEMGVLTYNWTVWGDASC--- 102

Query: 82  LFHQSANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWS 140
               S N+      IR +R FHTS P+ A P   + LI KP+ +++ AI++ R  RKWW 
Sbjct: 103 ----SPNYA----AIREVRSFHTSAPRQAAPVPLLMLILKPVQKLL-AIIVGRGIRKWWQ 153

Query: 141 KLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQL 199
            L PD+K +    +K+++ ++  + L++ GL ++ +YF HLE  P+TGR K ++V     
Sbjct: 154 ALPPDKKALFKDSVKRNKWRLL-LGLSAFGLLFVVFYFTHLEVSPVTGRSKLLLVGKEHF 212

Query: 200 NDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDP 259
             ++ + Y+ ++EE  N +LP   P Y  V  VV  L   N+     +   + + ++  P
Sbjct: 213 RLLSDLEYEVWMEEFKNDLLPEEDPRYLTVKKVVYHLTQCNQDVPGVSEINWVVHVVHSP 272

Query: 260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIV 319
            +NAFV P+G++F+FTG+        +L+ +L HE++H +L H AEK S    L+ L ++
Sbjct: 273 KVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMI 332

Query: 320 PLMIIWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEA 378
            L +IW + P D  A++ Q +   L+  +F+ P                  + R +E EA
Sbjct: 333 FLTMIWAICPRDSLAVLGQWIQSKLQEYMFDRP------------------YSRTLEAEA 374

Query: 379 DEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMK 438
           D++GL+L A+AC DVR + +FWQ+M   E+     PK+ E+LSTHPSH NRA  L+  + 
Sbjct: 375 DKIGLQLAAKACVDVRASSVFWQQMEFSESLHGY-PKLPEWLSTHPSHGNRAEYLDRLIP 433

Query: 439 EALDIRKECNCLPL-GPLFIPRL 460
           +AL +R+ CNC PL GP   PRL
Sbjct: 434 QALKLREVCNCPPLSGP--DPRL 454

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 230/419 (54%), Gaps = 34/419 (8%)

Query: 53  GCILSCDKKYSTCLNFQITGHQDKHLTR-------VLFHQSANHQLQVFNIRVLRCFHTS 105
           GC+LS   K    ++ + T   D    +       V+   S +H L     R +R FHTS
Sbjct: 80  GCLLSSRSKEIWMISRKCTAWTDSFSRQLPMKNVPVVPAHSMSHPLNCLPTRDIRSFHTS 139

Query: 106 QPKNALPG-FIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGI 164
               A P   + +I KP  +++ AI++ R  RKWW  L P++K++    ++K++ K+  +
Sbjct: 140 PRCQAAPAPLLLMILKPAQKLL-AIIVGRGIRKWWQALPPNKKELFKESLRKNKWKLF-L 197

Query: 165 TLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGH 223
            L+S GL ++ +YF HLE  P+TGR K +I+       ++++ Y+ ++EE  N +L    
Sbjct: 198 GLSSFGLLFVVFYFTHLEVSPVTGRSKLLILGKEHFRLLSELEYEAWMEEFKNDMLTEKD 257

Query: 224 PAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQT 283
             Y  V AVV  LI+ N+     +   + I ++D P INAFV P+G++F+FTG+      
Sbjct: 258 ARYVAVKAVVHHLIECNQDIPGISEINWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTD 317

Query: 284 DDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVTQVLLDD 342
             +L+ +L HE++H +L+H AEK S    L+ L ++ L  IW + P D  A++ Q +   
Sbjct: 318 IHQLSFLLGHEIAHAVLEHAAEKASLVHLLDFLGLIFLTTIWAICPRDSLALLGQWIQSK 377

Query: 343 LKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQK 402
           L+  +F+ P                  + R +E EAD +GL+L A+AC DVR + +FWQ+
Sbjct: 378 LQEFLFDRP------------------YSRTLEAEADRIGLQLAAKACVDVRASSVFWQQ 419

Query: 403 MALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPL-GPLFIPRL 460
           M   E+     PK+ E+LSTHPSH NRA +L+  + +AL IR+ CNC PL GP   PRL
Sbjct: 420 MEFAESL-HGHPKLPEWLSTHPSHGNRAEHLDRLIPQALKIRETCNCPPLSGP--DPRL 475

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1

 Score =  233 bits (594), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 210/371 (56%), Gaps = 24/371 (6%)

Query: 86  SANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSP 144
           S  H L   +IR +R FHTS    A P   + +I KP+ ++  AI++ R  RKWW  L P
Sbjct: 120 SVLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLF-AIIVGRGIRKWWQALPP 178

Query: 145 DQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVT 203
           ++K+++   I+K++ K+  + L+S GL ++ +YF HLE  PITGR K +++   Q   ++
Sbjct: 179 NKKEVVKENIRKNKWKLF-LGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLS 237

Query: 204 QIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINA 263
           ++ Y+ ++EE  N +L      Y  V  V+  LI+ NK     +   + I ++D P+INA
Sbjct: 238 ELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINA 297

Query: 264 FVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMI 323
           FV P+G++F+FTG         +L+ +L HE++H +L H AEK      L+ L ++ L +
Sbjct: 298 FVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTM 357

Query: 324 IWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVG 382
           IW + P D  A++ Q +   L+  +F  P                  + R++E EAD++G
Sbjct: 358 IWAICPRDSLALLCQWIQSKLQEYMFNRP------------------YSRKLEAEADKIG 399

Query: 383 LKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALD 442
           L L A+AC D+R + +FWQ+M   ++     PKM E+LSTHPSH NR   L+  + +AL 
Sbjct: 400 LLLAAKACADIRASSVFWQQMEFVDSLHG-QPKMPEWLSTHPSHGNRVEYLDRLIPQALK 458

Query: 443 IRKECNCLPLG 453
           IR+ CNC PL 
Sbjct: 459 IREMCNCPPLS 469

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=2 SV=1

 Score =  228 bits (582), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 208/365 (56%), Gaps = 27/365 (7%)

Query: 100 RCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQ 158
           R F TS    A P   + LI KP+ +++ AI++ R  RKWW  L P++K++    ++K++
Sbjct: 130 RSFRTSARVQAAPVPLLLLILKPVQKLL-AIIVGRGIRKWWQALPPNKKELFKDSVRKNK 188

Query: 159 DKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQ 217
            ++  + L++ GL ++ +YF HLE  P+TGR K ++V       ++ + Y+ ++EE  N 
Sbjct: 189 WRLL-LGLSAFGLLFVVFYFTHLEVSPVTGRSKLLLVGKEHFRLLSDLEYEVWMEEFKND 247

Query: 218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGM 277
           +LP   P Y  V  +V  L   N+     +   + + ++D P +NAFV P+G++F+FTG+
Sbjct: 248 LLPERDPRYLTVKEMVYHLTQCNRDVPGISETNWVVHVVDSPAVNAFVLPNGQVFIFTGL 307

Query: 278 FQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVT 336
                   +L+ +L HE++H +L H AEK S    L+ L ++ L +IW + P D  A++ 
Sbjct: 308 LNSVTDVHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMIFLTMIWAICPRDSLAVLG 367

Query: 337 QVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVA 396
           Q +   L+  +F+ P                  + R +E EAD+VGL+L A+AC DVR +
Sbjct: 368 QWIQSKLQEYMFDRP------------------YSRTLEAEADKVGLQLAAKACADVRAS 409

Query: 397 PLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPL-GPL 455
            +FWQ+M   E+     PK+ E+LSTHPSH NRA  L+  + +AL +R+ CNC PL GP 
Sbjct: 410 SVFWQQMEFSESLHGY-PKLPEWLSTHPSHGNRAEYLDRLIPQALKLREVCNCPPLSGP- 467

Query: 456 FIPRL 460
             PRL
Sbjct: 468 -DPRL 471

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1

 Score =  215 bits (548), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 198/366 (54%), Gaps = 28/366 (7%)

Query: 100 RCFHTSQPKNALPGF--IYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKH 157
           R FHTS  + ALP    ++++ KP+ +++ AI++ R  RKWW  L  ++K++      + 
Sbjct: 102 RGFHTSGRRRALPALPLLWMVLKPLQKIM-AIILGRSIRKWWVALPANKKQLFREWSWRR 160

Query: 158 QDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQ 217
           +    G     + +A +++F HL+  PITGR + ++       ++ Q   D F+EE  + 
Sbjct: 161 RWHFLGAGTGLLFIASLFFFTHLDESPITGRTRLLVFSRKNFRELAQFNADAFMEEFKDS 220

Query: 218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGM 277
           ++    P +K V  VV+ L   N+   E +   + + ++D P +NAFV P+G IF+FTGM
Sbjct: 221 LIASSDPRHKVVEQVVQILAQRNQDIAEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGM 280

Query: 278 FQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVT 336
                   +L  +L HE++H L+ H AE+ S    +E+L +V L  IW + P D  A + 
Sbjct: 281 LNAVTDIHQLTFILGHEMAHALIGHAAEQASLSHVVELLSLVLLTAIWAVCPRDSLAALG 340

Query: 337 QVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVA 396
             +   L   +F+ PF                   R++E EAD+VGL++ A+AC DVR  
Sbjct: 341 HWIQGKLVQFLFDRPF------------------SRKLEAEADQVGLQMAAKACADVRAG 382

Query: 397 PLFWQKMALKETQDQVG--PKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGP 454
           P+FW++M   E  DQ+   P M E+LSTHPSH+NR   L+  + EAL++R  CNC P  P
Sbjct: 383 PVFWEQM---EIFDQLSGQPTMPEWLSTHPSHQNRVRQLDRLIPEALELRARCNC-PELP 438

Query: 455 LFIPRL 460
              PR+
Sbjct: 439 KTDPRV 444

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of opa1 at S1 position, leading to opa1 inactivation and negative regulation of mitochondrial fusion.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1

 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 36/282 (12%)

Query: 169 IGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKR 228
           I    +YYF HLE  PI+ R++F  V  +    + Q AY   + E+G+++LP  HP    
Sbjct: 75  IAGGGVYYFTHLEYVPISNRRRFNDVSLDFEKRMAQDAYKEVMSEYGDRMLPSYHPTTLY 134

Query: 229 VGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELA 288
           V  V+KR+I  + +    ++ K+ + +I DP  NAFV P G++F+F G+  +C+ +D LA
Sbjct: 135 VSRVLKRIIAVSGM----SDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLA 190

Query: 289 TVLSHELSHTLLKHVAEKLS-NKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSII 347
            VL+HE +H + +H AEK++  +    I+++    +      DL   ++  LL+      
Sbjct: 191 AVLAHETAHQVARHSAEKIAFTRAVSCIVFLAAASL------DLSGQLSHFLLN----FG 240

Query: 348 FELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKE 407
             LPF R                  +METEAD +GL LM++AC+D   A   W++M   E
Sbjct: 241 LLLPFSR------------------KMETEADYIGLMLMSQACFDPNAAKTLWERMDAAE 282

Query: 408 TQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNC 449
              Q+G K   + STHPS + R   +E  + EA   R+  +C
Sbjct: 283 --GQMG-KALAFASTHPSSKKRIRKIEEWLPEAQVKRETSDC 321

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 148/298 (49%), Gaps = 40/298 (13%)

Query: 169 IGLAYIYYFLHLETCPITGRQKFIIV-KPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYK 227
            G   ++Y+ HL+  P++ R +FI V +P +L  +    Y +   +   ++LP  HP   
Sbjct: 72  FGGCSLFYYTHLDKAPVSDRSRFIWVSRPLELT-IGNYTYKSIWRQTQQEILPPQHPLSI 130

Query: 228 RVGAVVKRLIDANKVYMEHNN-----FKYPITIIDDPLI--NAFVFPDGRIFMFTGMFQL 280
           ++  +  ++++A       +N      K+ I +++DP    NAFV P G++F+F+ +  +
Sbjct: 131 KIENIFMKIVEAAYKDPSVDNSLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPI 190

Query: 281 CQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGA-IVTQVL 339
           C  DD +ATVL+HE +H L +H AE LS      +L +V       L    GA  +  +L
Sbjct: 191 CANDDGIATVLAHEFAHQLARHTAENLSKAPIYSLLGLV-------LYTVTGAHAINNIL 243

Query: 340 LDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLF 399
           LD                          +P  R+METEAD +GL +M+RAC+  + +   
Sbjct: 244 LDGF----------------------LRMPASRQMETEADYIGLMIMSRACFQPQESIKV 281

Query: 400 WQKMALKETQDQVGPKME-EYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLF 456
           W++MA  E Q   G  +  E+LSTHP+   R  N+   + +A +I ++ +C  +G  +
Sbjct: 282 WERMANFEKQMNRGGVVNMEFLSTHPASTRRIENMSKWLPKANEIYEQSDCSSMGNYY 339

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Can cleave the misfolded multi-pass membrane protein OXA1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8ZCC3|Y3069_YERPE TPR repeat-containing protein YPO3069/y1412/YP_2691 OS=Yersinia pestis GN=YPO3069 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 27/206 (13%)

Query: 239 ANKVYMEHNNFKYPI--TIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELS 296
            N++    N+ + P    ++++  INAF F  G + + + +F+    + ELA+VL+HE+S
Sbjct: 78  GNRLVANANSVRTPFHFYLVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEIS 137

Query: 297 HTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVT-QVLLDDLKSIIFELPFERE 355
           H   +H+A  +  +  L      PL  +  L   L  + + Q  +  L   +        
Sbjct: 138 HVTQRHLARAMEEQQRL-----APLTWVGVLGSILLTMASPQAGMAGLSGTL-------- 184

Query: 356 METEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPK 415
               A + II    F +  E EAD +G++++ R+ +D +  P F QK+A    Q +   K
Sbjct: 185 --AGAQQGII---SFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLA---DQSRYVSK 236

Query: 416 MEEYLSTHPSHENR---ANNLESKMK 438
             E L THP  ++R   A N  ++MK
Sbjct: 237 PPEMLLTHPLPDSRLSDARNRANQMK 262

Yersinia pestis (taxid: 632)

>sp|Q9KQ40|Y2164_VIBCH TPR repeat-containing protein VC_2164 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_2164 PE=4 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 30/215 (13%)

Query: 232 VVKRLID--ANKVYMEHNNFKYPIT--IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDEL 287
           V+   ID   +++    N+ K P T  +I D  INAF F  G + + +G+F   Q++ EL
Sbjct: 68  VLNEYIDNLGHRLVASANDVKTPFTFFMIRDRNINAFAFFGGYVALHSGLFLHAQSESEL 127

Query: 288 ATVLSHELSHTLLKHVA---EKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLK 344
           A+V++HE++H   +H+A   E+ + ++   I  +   +++    P+ G       +    
Sbjct: 128 ASVMAHEIAHVTQRHLARSMEEQARRSPATIAALAGSLLLAIAAPEAGIAAINATMAG-- 185

Query: 345 SIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMA 404
                             SI  ++ + R  E EAD  G+  +A+A +D    P F+ ++A
Sbjct: 186 ------------------SIQGQINYTRSNEKEADRFGIATLAKAGFDANAMPQFFTRLA 227

Query: 405 LKETQDQVGPKMEEYLSTHPSHENRANNLESKMKE 439
            +       P M   L THP  E+R  +   + ++
Sbjct: 228 DEYRYASKPPPM---LLTHPLPEDRITDSRERARQ 259

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

>sp|P66950|YFGC_SALTY TPR repeat-containing protein YfgC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfgC PE=4 SV=1

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 31/191 (16%)

Query: 255 IIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSN-KTFL 313
           +I++  INAF F  G + + + +F+    + +LA+V++HE+SH   +H+A  + + K   
Sbjct: 98  LINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSA 157

Query: 314 EILYIVPLMIIWFLL--PDLG-AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPF 370
            + ++  L  I   +  P  G A +T  L    + +I                      F
Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMI---------------------SF 196

Query: 371 EREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENR- 429
            ++ E EAD +G++++ RA +D +  P F +K+     Q +   +  E L THP  E+R 
Sbjct: 197 TQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLL---DQARYSTRPPEILLTHPLPESRL 253

Query: 430 --ANNLESKMK 438
             A N  ++M+
Sbjct: 254 ADARNRANQMR 264

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
242011900	368	metalloendopeptidase OMA1, putative [Ped	0.688	0.888	0.355	2e-64
449268245	426	Metalloendopeptidase OMA1, mitochondrial	0.741	0.826	0.364	2e-64
224058314	453	PREDICTED: metalloendopeptidase OMA1, mi	0.732	0.768	0.362	8e-64
321472037	374	hypothetical protein DAPPUDRAFT_48386 [D	0.686	0.871	0.386	1e-63
395530545	439	PREDICTED: metalloendopeptidase OMA1, mi	0.762	0.824	0.357	3e-63
326925461	463	PREDICTED: metalloendopeptidase OMA1, mi	0.728	0.747	0.353	2e-62
291398799	527	PREDICTED: OMA1 homolog, zinc metallopep	0.844	0.760	0.339	9e-62
363736660	564	PREDICTED: metalloendopeptidase OMA1, mi	0.741	0.624	0.355	1e-61
157820983	504	metalloendopeptidase OMA1, mitochondrial	0.842	0.793	0.334	3e-61
426215616	523	PREDICTED: metalloendopeptidase OMA1, mi	0.808	0.734	0.35	3e-61

>gi|242011900|ref|XP_002426681.1| metalloendopeptidase OMA1, putative [Pediculus humanus corporis] gi|212510852|gb|EEB13943.1| metalloendopeptidase OMA1, putative [Pediculus humanus corporis]

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 206/352 (58%), Gaps = 25/352 (7%)

Query: 102 FHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKI 161
           FHTS P+NA+P  + L  + I+++ G ++  RI R+WW KL  ++K+ IL QI   + KI
Sbjct: 30  FHTSNPRNAIPPILVLALRSIVKL-GPVISGRIIRRWWQKLPQEEKEKILQQIYSKKTKI 88

Query: 162 AGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPL 221
           A      IG  Y+YY  ++   P+T R++F+++   QL  + +  Y+  +  +   ++P 
Sbjct: 89  ACCGTIFIGALYLYYLENITEEPLTKRKRFMVLNQKQLYQIAEFEYNQQMRTYKQNIVPA 148

Query: 222 GHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDP-LINAFVFPDGRIFMFTGMFQL 280
            HP Y+RV  V   L+ +N+   E  +  + + ++D P + NAF  P G+IF+FTGM  L
Sbjct: 149 WHPLYRRVTRVANNLLLSNRDLKEIRDKTWTVIVVDRPDITNAFALPHGKIFVFTGMLNL 208

Query: 281 CQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLL 340
           C  D +LA VL+HE+SH++L H AE +S    +E + I+P +I W +L D  A+ ++ + 
Sbjct: 209 CTNDHQLAIVLAHEISHSILSHTAESMSKIFLMEFILIIPSLIFWSILSDAWALFSEWIT 268

Query: 341 DDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFW 400
            ++ S++  LP                  F R +E EAD VGL+L A++CYD+R AP+FW
Sbjct: 269 ANIASVLIHLP------------------FSRAIEKEADFVGLQLAAKSCYDIREAPIFW 310

Query: 401 QKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPL 452
            K+ +  +   +     E+LSTHP HE+R + L+  + +AL++R++ NC PL
Sbjct: 311 GKLKVLSSDAVL-----EWLSTHPRHESRQSELKELLPQALELREKSNCPPL 357

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449268245|gb|EMC79115.1| Metalloendopeptidase OMA1, mitochondrial, partial [Columba livia]

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 224/379 (59%), Gaps = 27/379 (7%)

Query: 89  HQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQK 147
           H+   +NI+++R FH S    A P    ++I KP  ++  AI++ R  R WW  L P+++
Sbjct: 38  HRCSAWNIQIIRSFHASPSFQAAPVPLFWIIVKPAQKLF-AIILGRSIRNWWKALPPNKQ 96

Query: 148 KIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIA 206
           ++     +K++ KI  + ++S+G+ ++ +YF HLE  PITGR + ++       +++Q+ 
Sbjct: 97  ELFKESARKNKWKIL-LGVSSLGVLFVMFYFTHLEETPITGRARLLVFGKEHFRELSQME 155

Query: 207 YDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVF 266
           YD ++E+  +++LP     Y+ V  VV  L ++NK   + +  K+ I ++D+P +NAFV 
Sbjct: 156 YDMWMEKFESKMLPETDARYQVVERVVGHLSESNKDIPQVSMLKWLIHVVDEPDVNAFVL 215

Query: 267 PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWF 326
           P+G++F+FTG+        +L+ +L HE++H +L+H AEK S   FL+ L ++ L +IW 
Sbjct: 216 PNGQVFVFTGLLNAVSDIHQLSFILGHEIAHAVLEHAAEKASLVHFLDFLSLIFLTMIWA 275

Query: 327 LLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKL 385
           + P D  A+V Q +   L+  +F+ P                  + R +E EAD+VGL+ 
Sbjct: 276 ICPRDSLAVVGQWIQGKLQEFMFDRP------------------YSRTLEAEADKVGLQF 317

Query: 386 MARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRK 445
            A+AC DVR + +FWQ+M L ET  Q  PK+ E+LSTHPSHENRA +L+  + EAL IR+
Sbjct: 318 AAKACVDVRASSVFWQQMELAETV-QGQPKLPEWLSTHPSHENRAEHLDRLIPEALKIRE 376

Query: 446 ECNCLPLG---PLFIPRLN 461
            CNC  L    P  I RLN
Sbjct: 377 SCNCPSLSGPDPRLIFRLN 395

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224058314|ref|XP_002194575.1| PREDICTED: metalloendopeptidase OMA1, mitochondrial [Taeniopygia guttata]

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 222/375 (59%), Gaps = 27/375 (7%)

Query: 93  VFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIIL 151
            +NI++ R FH S    A P    +++ KP  ++  AI++ R  R WW  L P+++++  
Sbjct: 53  AWNIQINRSFHASPSLQAAPVPLFWILVKPAQKLF-AIILGRSIRNWWKALPPNKRELFK 111

Query: 152 SQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNF 210
           +  +K++ KI  + ++S+G+ ++ +YF HLE  PITGR + ++       +++Q+ YD +
Sbjct: 112 ASARKNKWKIL-LGVSSLGVVFVMFYFTHLEETPITGRARLLVFGKEHFRELSQMEYDMW 170

Query: 211 IEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGR 270
           +E+  +Q+LP     Y+ V  VV  L ++NK   + +  ++ I ++D+P +NAFV P+G+
Sbjct: 171 MEQFKSQMLPETDARYQVVERVVGHLSESNKDIPQVSALQWVIHVVDEPGVNAFVLPNGQ 230

Query: 271 IFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP- 329
           +F+FTG+        +L+ +L HE++H +L+H AEK S   FL+ L ++ L +IW + P 
Sbjct: 231 VFVFTGLLDAVSDIHQLSFILGHEIAHAVLEHAAEKASLVHFLDFLSLIFLTMIWAICPR 290

Query: 330 DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARA 389
           D  A+V Q +   L+  +F+ P                  + R +E EAD+VGL+  A+A
Sbjct: 291 DSLAVVGQWIQSKLQEFMFDRP------------------YSRTLEAEADKVGLQFAAKA 332

Query: 390 CYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNC 449
           C DVR + +FWQ+M L ET  Q  PK+ E+LSTHPSHENRA +L+  + EAL IR+ CNC
Sbjct: 333 CVDVRASSVFWQQMELAET-IQGQPKLPEWLSTHPSHENRAEHLDRLIPEALKIRERCNC 391

Query: 450 LPLG---PLFIPRLN 461
             L    P  I RLN
Sbjct: 392 PSLSGPDPRLIFRLN 406

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321472037|gb|EFX83008.1| hypothetical protein DAPPUDRAFT_48386 [Daphnia pulex]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 198/349 (56%), Gaps = 23/349 (6%)

Query: 102 FHTSQPKNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKI 161
           FHT+ P+ A+P  + +I +P LRVV A    R  RKWW  L  D+++   S+IK+ + KI
Sbjct: 39  FHTTSPRAAIPPVVLIILRPALRVV-AFFAGRNFRKWWRSLPKDKREHYWSRIKEKKWKI 97

Query: 162 -AGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLP 220
             G  +TS  +AY +Y  HLE  PITGR++F IV   Q+ D++Q+ +     E+ +++ P
Sbjct: 98  LVGGAVTS-AMAYWFYMSHLEVEPITGRERFSIVSTKQIQDLSQLEFQAICTEYASRIEP 156

Query: 221 LGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPL-INAFVFPDGRIFMFTGMFQ 279
           + HP Y R+  V  RL+ ANK   +     + IT++DDP  +NAFV P+G IF+FTGM  
Sbjct: 157 IKHPYYARMKRVADRLLHANKHLPQIYTKTWTITVLDDPRNMNAFVLPNGNIFVFTGMLD 216

Query: 280 LCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVL 339
            C TDDEL  VL HE+SH LL H AE +S +  LE + +V + + W  LP          
Sbjct: 217 FCTTDDELGVVLGHEISHCLLGHAAENVSREHLLEAIKLVLIALAWAFLPS--------- 267

Query: 340 LDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLF 399
            D L  + + +            +     P+ R +E EAD+VG+ L A+AC+DVR A  F
Sbjct: 268 -DILSLLGYGV-------GAGAVNATLRYPYSRNLENEADQVGIHLAAKACFDVRAALAF 319

Query: 400 WQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECN 448
           W KM +    D +    +E+LSTHPSH+ R   +E ++ +A+  RK C 
Sbjct: 320 WDKMDIIHELDLLAS--QEWLSTHPSHKTRVAKIEEQLPDAISFRKYCK 366

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395530545|ref|XP_003767353.1| PREDICTED: metalloendopeptidase OMA1, mitochondrial [Sarcophilus harrisii]

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 233/397 (58%), Gaps = 35/397 (8%)

Query: 65  CLNFQITGHQD-KHLTRVLFHQSANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPI 122
           C++F++T   D K+  R  +       + V  ++ +  FHTS    A P   +++I KPI
Sbjct: 14  CVSFRLTSLTDWKNSFRAYWKL-----VPVKGMKDVHSFHTSSRLRAAPVPLLWIILKPI 68

Query: 123 LRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLE 181
            +++ AI+I R  RKWW  L P++K++    +KK++ K+  + L+S+G+ ++ +YF HLE
Sbjct: 69  QKLL-AIIIGRGIRKWWQTLPPNKKELFKESVKKNKGKLF-LGLSSLGVLFVVFYFTHLE 126

Query: 182 TCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANK 241
             P+TGR+K +++   Q   ++Q+ YD ++EE  N +L    P Y  V  V++ L+++NK
Sbjct: 127 ESPVTGRKKLLVLGKEQFMMLSQMEYDTWMEEFKNDLLTEKDPRYLAVKKVLQHLVESNK 186

Query: 242 VYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLK 301
                + FK+ I ++D P INAFV P+G++F+FTG+ +      +L  +L HE++H +L 
Sbjct: 187 DIPGISEFKWIIHVVDKPSINAFVLPNGQVFVFTGLLEAVTDIHQLTFLLGHEIAHAVLG 246

Query: 302 HVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEA 360
           H AEK S     + L ++ L +IW + P D  A++ Q +   LK  +F+ P         
Sbjct: 247 HAAEKASLVHLWDFLGLIILAMIWAVCPRDSLAVLAQWIQSKLKEYVFDRP--------- 297

Query: 361 DESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQV--GPKMEE 418
                    + R +E EAD+VGL+  A+AC DVR + +FWQ++   E  D++   PK+ E
Sbjct: 298 ---------YSRTLEVEADKVGLQFAAKACVDVRASAVFWQQL---EFADKILGDPKLPE 345

Query: 419 YLSTHPSHENRANNLESKMKEALDIRKECNCLPL-GP 454
           +LSTHPSHENRA +L   + +A+ IR+ CNC PL GP
Sbjct: 346 WLSTHPSHENRAEHLNRLIPQAIKIRESCNCPPLSGP 382

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326925461|ref|XP_003208933.1| PREDICTED: metalloendopeptidase OMA1, mitochondrial-like [Meleagris gallopavo]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 222/373 (59%), Gaps = 27/373 (7%)

Query: 95  NIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQ 153
           + +++R FHTS  + A P    ++I KP+ ++  AI++ R  RKWW  L P+++++    
Sbjct: 81  SAQLIRSFHTSPSRQAAPFPLFWIIIKPVQKLF-AILVGRSIRKWWKALPPNKRELFKES 139

Query: 154 IKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIE 212
           ++ ++ KI  + ++S+G+ ++ +YF HLE  PITGR + ++     L +++Q+ Y  +++
Sbjct: 140 VRTNKWKIL-LGVSSLGVLFVVFYFTHLEETPITGRARLLVFGKEHLRELSQMEYSMWMD 198

Query: 213 EHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIF 272
           ++ +++LP     Y+ V  VV  L ++NK   + +   + I ++D+P +NAFV P+G +F
Sbjct: 199 KYESKMLPETDARYQVVKRVVGHLSESNKDIPQVSALTWAIHVVDEPEVNAFVLPNGEVF 258

Query: 273 MFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DL 331
           +FTG+        +L+ +L HE++H +L+H  EK S    L+ L ++ L +IW + P D+
Sbjct: 259 VFTGLLNAVSDIHQLSFILGHEIAHAVLEHAIEKASLVHLLDFLSLIFLTMIWAICPHDI 318

Query: 332 GAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACY 391
            A+V Q +   L+  IF+ P                  + R +E EAD+VGL+  A+AC 
Sbjct: 319 LAVVGQRIQSKLQEFIFDRP------------------YSRTLEAEADKVGLQFAAKACV 360

Query: 392 DVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLP 451
           DVR + +FWQ+M L ET  +  PK+ E+LSTHPSHENRA +L+  + EAL IR+ CNC  
Sbjct: 361 DVRASSVFWQRMELVET-IKGEPKLPEWLSTHPSHENRAEHLDRLIPEALKIRERCNCPS 419

Query: 452 LG---PLFIPRLN 461
           L    P  I RLN
Sbjct: 420 LSGPDPRLIFRLN 432

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291398799|ref|XP_002715634.1| PREDICTED: OMA1 homolog, zinc metallopeptidase [Oryctolagus cuniculus]

 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 148/436 (33%), Positives = 238/436 (54%), Gaps = 35/436 (8%)

Query: 36  IPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQSA-------N 88
           +P + S ++T L      C+ S   K    +  + T   +    RVL  +         +
Sbjct: 65  VPGNLSFLST-LNNTRTRCLSSTKNKEIWMVAHKCTAWNESLSRRVLMKEVTAVPALLES 123

Query: 89  HQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQK 147
           H L  F +R +R FHTS    A P   + +I KP+ +++ AI++ R  RKWW  L P++K
Sbjct: 124 HALSCFPLRAVRTFHTSARLQAAPVPLLLVILKPVQKLL-AIIVGRGIRKWWQALPPNKK 182

Query: 148 KIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIA 206
           ++    ++K++  +  + L+  GL +I +YF HLE  P+TGR K +++       ++++ 
Sbjct: 183 EVFKESVRKNKWNLF-LGLSGFGLLFIVFYFTHLEVSPVTGRSKLLLLGKEHFRLLSELE 241

Query: 207 YDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVF 266
           Y+ ++EE  N +LP     Y  V  VV  LI+ NK     +   + I ++D P INAFV 
Sbjct: 242 YEAWMEEFKNDMLPEKDARYLTVKEVVYHLIECNKDIPGISEINWIIHVVDSPDINAFVL 301

Query: 267 PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWF 326
           P+G++F+FTG+        +L+ +L HE++H +L H AEK S    L+ L ++ L +IW 
Sbjct: 302 PNGQVFIFTGLLNSVTDIHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMIFLTMIWA 361

Query: 327 LLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKL 385
           + P D  A++ Q +   L+  IF+ P                  + R +E EAD++GL+L
Sbjct: 362 ICPRDSLALLGQWIQSKLQEYIFDRP------------------YSRTLEAEADKIGLQL 403

Query: 386 MARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRK 445
            A+AC DVR + +FWQ+M   ++     PK+ E+LSTHPSH NRA +L+  + +AL IR+
Sbjct: 404 AAKACVDVRASSVFWQQMEFADSLHG-HPKLPEWLSTHPSHGNRAEHLDRLIPQALKIRE 462

Query: 446 ECNCLPL-GPLFIPRL 460
           +CNC PL GP   PRL
Sbjct: 463 KCNCPPLSGP--DPRL 476

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363736660|ref|XP_422503.3| PREDICTED: metalloendopeptidase OMA1, mitochondrial [Gallus gallus]

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 221/380 (58%), Gaps = 28/380 (7%)

Query: 88  NHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQ 146
           NH     N +++R F TS    A P    ++I KP+ ++  AI++ R  RKWW  L P++
Sbjct: 176 NH-FSAGNTQLVRSFRTSPSLRAAPFPLFWIIIKPVQKLF-AILVGRSIRKWWKALPPNK 233

Query: 147 KKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQI 205
           +++    ++ ++ KI  + ++S+G+ ++ +YF HLE  PITGR + ++     L  ++Q+
Sbjct: 234 RELFKESVRTNKWKIL-LGVSSLGVLFVVFYFTHLEETPITGRARLLVFGKEHLRQLSQV 292

Query: 206 AYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFV 265
            Y  ++E++ +++LP     Y+ V  VV  L ++NK   + +   + I ++D+P +NAFV
Sbjct: 293 EYSMWMEKYESKMLPETDARYQVVKRVVGHLSESNKDIPQVSALTWAIHVVDEPEVNAFV 352

Query: 266 FPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIW 325
            P+G +F+FTG+        +L+ +L HE++H +L+H  EK S   FL+ L ++ L +IW
Sbjct: 353 LPNGEVFVFTGLLNAVSDIHQLSFILGHEIAHAVLEHAIEKASLVHFLDFLSLIFLTMIW 412

Query: 326 FLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLK 384
            + P D+ A+V Q +   L+  IF+ P                  + R +E EAD+VGL+
Sbjct: 413 AICPHDILAVVGQRIQSKLQEFIFDRP------------------YSRTLEAEADKVGLQ 454

Query: 385 LMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIR 444
             A+AC DVR + +FWQ M L ET  +  PK+ E+LSTHPSHENRA +L+  + EAL IR
Sbjct: 455 FAAKACVDVRASSVFWQLMELVET-IKGEPKLPEWLSTHPSHENRAEHLDRLIPEALKIR 513

Query: 445 KECNCLPLG---PLFIPRLN 461
           + CNC  L    P  + RLN
Sbjct: 514 ERCNCPSLSGPDPRLVFRLN 533

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157820983|ref|NP_001100139.1| metalloendopeptidase OMA1, mitochondrial [Rattus norvegicus] gi|387935354|sp|D3ZS74.1|OMA1_RAT RecName: Full=Metalloendopeptidase OMA1, mitochondrial; AltName: Full=Overlapping with the m-AAA protease 1 homolog; Flags: Precursor gi|149044611|gb|EDL97870.1| OMA1 homolog, zinc metallopeptidase (S. cerevisiae) (predicted) [Rattus norvegicus]

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 234/443 (52%), Gaps = 43/443 (9%)

Query: 22  TSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTRV 81
           T   C   +  PRN+   R+     L+     C+ S   K    L +  T   D      
Sbjct: 51  TVSHCYSVILLPRNLHFCRT-----LKNKRSRCLSSAQSKEMGVLTYNWTVWGDASC--- 102

Query: 82  LFHQSANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWS 140
               S N+      IR +R FHTS P+ A P   + LI KP+ +++ AI++ R  RKWW 
Sbjct: 103 ----SPNYA----AIREVRSFHTSAPRQAAPVPLLMLILKPVQKLL-AIIVGRGIRKWWQ 153

Query: 141 KLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQL 199
            L PD+K +    +K+++ ++  + L++ GL ++ +YF HLE  P+TGR K ++V     
Sbjct: 154 ALPPDKKALFKDSVKRNKWRLL-LGLSAFGLLFVVFYFTHLEVSPVTGRSKLLLVGKEHF 212

Query: 200 NDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDP 259
             ++ + Y+ ++EE  N +LP   P Y  V  VV  L   N+     +   + + ++  P
Sbjct: 213 RLLSDLEYEVWMEEFKNDLLPEEDPRYLTVKKVVYHLTQCNQDVPGVSEINWVVHVVHSP 272

Query: 260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIV 319
            +NAFV P+G++F+FTG+        +L+ +L HE++H +L H AEK S    L+ L ++
Sbjct: 273 KVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMI 332

Query: 320 PLMIIWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEA 378
            L +IW + P D  A++ Q +   L+  +F+ P                  + R +E EA
Sbjct: 333 FLTMIWAICPRDSLAVLGQWIQSKLQEYMFDRP------------------YSRTLEAEA 374

Query: 379 DEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMK 438
           D++GL+L A+AC DVR + +FWQ+M   E+     PK+ E+LSTHPSH NRA  L+  + 
Sbjct: 375 DKIGLQLAAKACVDVRASSVFWQQMEFSESLHGY-PKLPEWLSTHPSHGNRAEYLDRLIP 433

Query: 439 EALDIRKECNCLPL-GPLFIPRL 460
           +AL +R+ CNC PL GP   PRL
Sbjct: 434 QALKLREVCNCPPLSGP--DPRL 454

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426215616|ref|XP_004002067.1| PREDICTED: metalloendopeptidase OMA1, mitochondrial [Ovis aries]

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/420 (35%), Positives = 235/420 (55%), Gaps = 36/420 (8%)

Query: 53  GCILSCDKKYSTCLNFQITGHQDKHLTRVLFHQ--------SANHQLQVFNIRVLRCFHT 104
           GC+LS   K  + ++ + T   D  L+R L  +        S  H L     R  R FHT
Sbjct: 80  GCLLSTRSKEISMISRKCTACTDS-LSRQLLMKDVPIVPAHSVLHPLNCLLTRDFRSFHT 138

Query: 105 SQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAG 163
           S    A P   + +I KP+ +++ AI++ R  RKWW  L P++K++    ++K++ K+  
Sbjct: 139 SPRCQAAPVPVLLMILKPVQKLL-AIIVGRGIRKWWQALPPNKKELFKESLRKNKWKLF- 196

Query: 164 ITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLG 222
           + L+S GL ++ +YF HLE  P+TGR K ++++      ++++ Y+ ++EE  N +L   
Sbjct: 197 LGLSSFGLLFVVFYFTHLEVSPVTGRSKLLLLRKEHFRLLSELEYEAWMEEFKNDMLTEK 256

Query: 223 HPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQ 282
              Y  V AVV  LI+ N+     +   + I ++D P INAFV P+G++F+FTG+     
Sbjct: 257 DARYVAVQAVVHHLIECNQDIPGISEINWVIHVVDSPDINAFVLPNGQVFVFTGLLNSVT 316

Query: 283 TDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVTQVLLD 341
              +L+ +L HE++H +L+H AEK S    L+ L ++ L +IW + P D  A++ Q +  
Sbjct: 317 DIHQLSFLLGHEIAHAVLEHAAEKASLVHLLDFLGLIFLTMIWAICPRDSLALLGQWIQS 376

Query: 342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQ 401
            L+  +F+ P                  + R +E EAD++GL+L A+AC DVR + +FWQ
Sbjct: 377 KLQEFLFDRP------------------YSRTLEAEADKIGLQLAAKACVDVRASSVFWQ 418

Query: 402 KMALKETQDQVGPKMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPL-GPLFIPRL 460
           +M   E+     PK+ E+LSTHPSH NRA +L+  + +AL IR+ CNC PL GP   PRL
Sbjct: 419 QMEFAESLHG-HPKLPEWLSTHPSHGNRAEHLDRLIPQALKIRETCNCPPLSGP--DPRL 475

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
UNIPROTKB|Q3SZN3	523	OMA1 "Metalloendopeptidase OMA	0.684	0.621	0.323	4.2e-67
UNIPROTKB|Q96E52	524	OMA1 "Metalloendopeptidase OMA	0.578	0.524	0.346	1.1e-64
UNIPROTKB|E2R610	525	OMA1 "Uncharacterized protein"	0.610	0.552	0.320	1.8e-64
UNIPROTKB|F1S7A5	527	OMA1 "Uncharacterized protein"	0.618	0.557	0.326	3.3e-63
UNIPROTKB|I3LV41	522	OMA1 "Uncharacterized protein"	0.618	0.563	0.326	3.3e-63
MGI|MGI:1914263	521	Oma1 "OMA1 homolog, zinc metal	0.549	0.500	0.327	3.3e-63
ZFIN|ZDB-GENE-091204-124	510	si:ch73-215a11.1 "si:ch73-215a	0.551	0.513	0.315	1.1e-60
UNIPROTKB|H7BZX2	328	OMA1 "Metalloendopeptidase OMA	0.492	0.713	0.345	1.4e-54
RGD|1304821	504	Oma1 "zinc metallopeptidase ho	0.595	0.561	0.332	1.2e-42
UNIPROTKB|E1C7A6	468	OMA1 "Uncharacterized protein"	0.621	0.630	0.311	1.9e-42

UNIPROTKB|Q3SZN3 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 454 (164.9 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
 Identities = 110/340 (32%), Positives = 184/340 (54%)

Query:    53 GCILSCDKKYSTCLNFQITGHQD--------KHLTRVLFHQSANHQLQVFNIRVLRCFHT 104
             GC+LS   K    ++ + T   D        K++  V  H S +H L     R +R FHT
Sbjct:    80 GCLLSSRSKEIWMISRKCTAWTDSFSRQLPMKNVPVVPAH-SMSHPLNCLPTRDIRSFHT 138

Query:   105 SQPKNALPG-FIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAG 163
             S    A P   + +I KP  +++ AI++ R  RKWW  L P++K++    ++K++ K+  
Sbjct:   139 SPRCQAAPAPLLLMILKPAQKLL-AIIVGRGIRKWWQALPPNKKELFKESLRKNKWKLF- 196

Query:   164 ITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLG 222
             + L+S GL ++ +YF HLE  P+TGR K +I+       ++++ Y+ ++EE  N +L   
Sbjct:   197 LGLSSFGLLFVVFYFTHLEVSPVTGRSKLLILGKEHFRLLSELEYEAWMEEFKNDMLTEK 256

Query:   223 HPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQ 282
                Y  V AVV  LI+ N+     +   + I ++D P INAFV P+G++F+FTG+     
Sbjct:   257 DARYVAVKAVVHHLIECNQDIPGISEINWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVT 316

Query:   283 TDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVTQVLLD 341
                +L+ +L HE++H +L+H AEK S    L+ L ++ L  IW + P D  A++ Q +  
Sbjct:   317 DIHQLSFLLGHEIAHAVLEHAAEKASLVHLLDFLGLIFLTTIWAICPRDSLALLGQWIQS 376

Query:   342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEV 381
              L+  +F+ P+ R +E EAD  I  +L  +  ++  A  V
Sbjct:   377 KLQEFLFDRPYSRTLEAEADR-IGLQLAAKACVDVRASSV 415

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0097009 "energy homeostasis" evidence=ISS

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0006629 "lipid metabolic process" evidence=ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0006006 "glucose metabolic process" evidence=ISS

GO:0002024 "diet induced thermogenesis" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96E52 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 452 (164.2 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
 Identities = 97/280 (34%), Positives = 162/280 (57%)

Query:    86 SANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSP 144
             S  H L   +IR +R FHTS    A P   + +I KP+ ++  AI++ R  RKWW  L P
Sbjct:   120 SVLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLF-AIIVGRGIRKWWQALPP 178

Query:   145 DQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVT 203
             ++K+++   I+K++ K+  + L+S GL ++ +YF HLE  PITGR K +++   Q   ++
Sbjct:   179 NKKEVVKENIRKNKWKLF-LGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLS 237

Query:   204 QIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINA 263
             ++ Y+ ++EE  N +L      Y  V  V+  LI+ NK     +   + I ++D P+INA
Sbjct:   238 ELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINA 297

Query:   264 FVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMI 323
             FV P+G++F+FTG         +L+ +L HE++H +L H AEK      L+ L ++ L +
Sbjct:   298 FVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTM 357

Query:   324 IWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADE 362
             IW + P D  A++ Q +   L+  +F  P+ R++E EAD+
Sbjct:   358 IWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADK 397

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0006950 "response to stress" evidence=IDA

GO:0004222 "metalloendopeptidase activity" evidence=IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0097009 "energy homeostasis" evidence=IMP

GO:0002024 "diet induced thermogenesis" evidence=IMP

UNIPROTKB|E2R610 OMA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 432 (157.1 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
 Identities = 95/296 (32%), Positives = 164/296 (55%)

Query:    89 HQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQK 147
             H L     R  R FHTS    A P   + +I KP+ ++  AI++ R  RKWW  L P++K
Sbjct:   123 HPLNCLPKRDTRSFHTSSRFQAAPVPLLLIILKPVQKLF-AIIVGRGIRKWWQALPPNKK 181

Query:   148 KIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIA 206
             ++    ++K++ K+  +  +S GL ++ +YF HLE  P+TGR K +++       ++++ 
Sbjct:   182 ELFKESLRKNKWKLL-LCFSSFGLLFVVFYFTHLEVSPVTGRSKLLLLGKEHFRLLSELE 240

Query:   207 YDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVF 266
             Y+ ++EE  N +L      Y  V  VV  LI+ NK     +   + I +++ P +NAFV 
Sbjct:   241 YEAWMEEFKNDMLTEKDARYLMVKEVVNHLIECNKDIPGVSEINWIIHVVNSPDVNAFVL 300

Query:   267 PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWF 326
             P+G++F+FTG+        +L+ +L HE++H +L H AEK S    L+ L ++ L +IW 
Sbjct:   301 PNGQVFIFTGLLNSVTDSHQLSFLLGHEIAHAILGHAAEKASLVHLLDFLGLIFLTMIWA 360

Query:   327 LLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEV 381
             + P D  A++ Q +   L+  +F+ P+ R +E EAD+ I  +L  +  ++  A  V
Sbjct:   361 ICPRDSLALLGQWIQSKLQEYMFDRPYSRTLEAEADK-IGLQLAAKACVDVRASSV 415

GO:0097009 "energy homeostasis" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0002024 "diet induced thermogenesis" evidence=IEA

UNIPROTKB|F1S7A5 OMA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 429 (156.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 98/300 (32%), Positives = 167/300 (55%)

Query:    86 SANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIV-IARISRKWWSKLS 143
             S +  L     R +R FHTS   +A P   + +I KP+ +++  IV  +R  RKWW  L 
Sbjct:   120 SVSRLLNCLPTRDVRSFHTSPRFHAAPVPLLLMILKPVQKLLAIIVGSSRGIRKWWRALP 179

Query:   144 PDQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDV 202
             P++K++    ++K++ K+  + L+S GL ++ +YF HLE  P+TGR K +++       +
Sbjct:   180 PNKKELFKESVRKNKWKLL-LGLSSFGLLFVVFYFTHLEVSPVTGRSKLLLLGKEHFRLL 238

Query:   203 TQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLIN 262
             +++ Y+ ++EE  N +L      Y  V  VV  LI+ NK     +   + I ++D   IN
Sbjct:   239 SELEYEAWMEEFKNDMLTEKDARYLTVKEVVHHLIECNKDIPGISEINWVIHVVDSSDIN 298

Query:   263 AFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLM 322
             AFV P+G++F+FTG+        +L+ ++ HE++H +L H AEK S    L+ L ++ L 
Sbjct:   299 AFVLPNGQVFLFTGLLNSVTDIHQLSFLMGHEIAHAVLGHAAEKASLVHLLDFLGLIFLT 358

Query:   323 IIWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEV 381
             +IW + P D  A++ Q +   L+  IF+ P+ R +E EAD+ I  EL  +  ++  A  V
Sbjct:   359 MIWAICPRDSLALLGQWIQSKLQEFIFDRPYSRTLEAEADK-IGLELAAKACVDVRASSV 417

GO:0097009 "energy homeostasis" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0002024 "diet induced thermogenesis" evidence=IEA

UNIPROTKB|I3LV41 OMA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 429 (156.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 98/300 (32%), Positives = 167/300 (55%)

Query:    86 SANHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIV-IARISRKWWSKLS 143
             S +  L     R +R FHTS   +A P   + +I KP+ +++  IV  +R  RKWW  L 
Sbjct:   120 SVSRLLNCLPTRDVRSFHTSPRFHAAPVPLLLMILKPVQKLLAIIVGSSRGIRKWWRALP 179

Query:   144 PDQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDV 202
             P++K++    ++K++ K+  + L+S GL ++ +YF HLE  P+TGR K +++       +
Sbjct:   180 PNKKELFKESVRKNKWKLL-LGLSSFGLLFVVFYFTHLEVSPVTGRSKLLLLGKEHFRLL 238

Query:   203 TQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLIN 262
             +++ Y+ ++EE  N +L      Y  V  VV  LI+ NK     +   + I ++D   IN
Sbjct:   239 SELEYEAWMEEFKNDMLTEKDARYLTVKEVVHHLIECNKDIPGISEINWVIHVVDSSDIN 298

Query:   263 AFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLM 322
             AFV P+G++F+FTG+        +L+ ++ HE++H +L H AEK S    L+ L ++ L 
Sbjct:   299 AFVLPNGQVFLFTGLLNSVTDIHQLSFLMGHEIAHAVLGHAAEKASLVHLLDFLGLIFLT 358

Query:   323 IIWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEV 381
             +IW + P D  A++ Q +   L+  IF+ P+ R +E EAD+ I  EL  +  ++  A  V
Sbjct:   359 MIWAICPRDSLALLGQWIQSKLQEFIFDRPYSRTLEAEADK-IGLELAAKACVDVRASSV 417

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

MGI|MGI:1914263 Oma1 "OMA1 homolog, zinc metallopeptidase (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 87/266 (32%), Positives = 153/266 (57%)

Query:   100 RCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQ 158
             R F TS    A P   + LI KP+ +++ AI++ R  RKWW  L P++K++    ++K++
Sbjct:   130 RSFRTSARVQAAPVPLLLLILKPVQKLL-AIIVGRGIRKWWQALPPNKKELFKDSVRKNK 188

Query:   159 DKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQ 217
              ++  + L++ GL ++ +YF HLE  P+TGR K ++V       ++ + Y+ ++EE  N 
Sbjct:   189 WRLL-LGLSAFGLLFVVFYFTHLEVSPVTGRSKLLLVGKEHFRLLSDLEYEVWMEEFKND 247

Query:   218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGM 277
             +LP   P Y  V  +V  L   N+     +   + + ++D P +NAFV P+G++F+FTG+
Sbjct:   248 LLPERDPRYLTVKEMVYHLTQCNRDVPGISETNWVVHVVDSPAVNAFVLPNGQVFIFTGL 307

Query:   278 FQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVT 336
                     +L+ +L HE++H +L H AEK S    L+ L ++ L +IW + P D  A++ 
Sbjct:   308 LNSVTDVHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMIFLTMIWAICPRDSLAVLG 367

Query:   337 QVLLDDLKSIIFELPFEREMETEADE 362
             Q +   L+  +F+ P+ R +E EAD+
Sbjct:   368 QWIQSKLQEYMFDRPYSRTLEAEADK 393

GO:0002024 "diet induced thermogenesis" evidence=ISO

GO:0004222 "metalloendopeptidase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IGI

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0034982 "mitochondrial protein processing" evidence=IMP

GO:0042407 "cristae formation" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO

ZFIN|ZDB-GENE-091204-124 si:ch73-215a11.1 "si:ch73-215a11.1" [Danio rerio (taxid:7955)]

 Score = 396 (144.5 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 84/266 (31%), Positives = 144/266 (54%)

Query:   100 RCFHTSQPKNALPGF--IYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKH 157
             R FHTS  + ALP    ++++ KP+ +++ AI++ R  RKWW  L  ++K++      + 
Sbjct:   102 RGFHTSGRRRALPALPLLWMVLKPLQKIM-AIILGRSIRKWWVALPANKKQLFREWSWRR 160

Query:   158 QDKIAGITLTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQ 217
             +    G     + +A +++F HL+  PITGR + ++       ++ Q   D F+EE  + 
Sbjct:   161 RWHFLGAGTGLLFIASLFFFTHLDESPITGRTRLLVFSRKNFRELAQFNADAFMEEFKDS 220

Query:   218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGM 277
             ++    P +K V  VV+ L   N+   E +   + + ++D P +NAFV P+G IF+FTGM
Sbjct:   221 LIASSDPRHKVVEQVVQILAQRNQDIAEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGM 280

Query:   278 FQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLGAIVT 336
                     +L  +L HE++H L+ H AE+ S    +E+L +V L  IW + P D  A + 
Sbjct:   281 LNAVTDIHQLTFILGHEMAHALIGHAAEQASLSHVVELLSLVLLTAIWAVCPRDSLAALG 340

Query:   337 QVLLDDLKSIIFELPFEREMETEADE 362
               +   L   +F+ PF R++E EAD+
Sbjct:   341 HWIQGKLVQFLFDRPFSRKLEAEADQ 366

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|H7BZX2 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 82/237 (34%), Positives = 140/237 (59%)

Query:   128 AIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPIT 186
             AI++ R  RKWW  L P++K+++   I+K++ K+  + L+S GL ++ +YF HLE  PIT
Sbjct:     4 AIIVGRGIRKWWQALPPNKKEVVKENIRKNKWKLF-LGLSSFGLLFVVFYFTHLEVSPIT 62

Query:   187 GRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEH 246
             GR K +++   Q   ++++ Y+ ++EE  N +L      Y  V  V+  LI+ NK     
Sbjct:    63 GRSKLLLLGKEQFRLLSELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGI 122

Query:   247 NNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEK 306
             +   + I ++D P+INAFV P+G++F+FTG         +L+ +L HE++H +L H AEK
Sbjct:   123 SQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEK 182

Query:   307 LSNKTFLEILYIVPLMIIWFLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADE 362
                   L+ L ++ L +IW + P D  A++ Q +   L+  +F  P+ R++E EAD+
Sbjct:   183 AGMVHLLDFLGMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADK 239

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1304821 Oma1 "zinc metallopeptidase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 96/289 (33%), Positives = 165/289 (57%)

Query:    96 IRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQI 154
             IR +R FHTS P+ A P   + LI KP+ +++ AI++ R  RKWW  L PD+K +    +
Sbjct:   109 IREVRSFHTSAPRQAAPVPLLMLILKPVQKLL-AIIVGRGIRKWWQALPPDKKALFKDSV 167

Query:   155 KKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEE 213
             K+++ ++  + L++ GL ++ +YF HLE  P+TGR K ++V       ++ + Y+ ++EE
Sbjct:   168 KRNKWRLL-LGLSAFGLLFVVFYFTHLEVSPVTGRSKLLLVGKEHFRLLSDLEYEVWMEE 226

Query:   214 HGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFM 273
               N +LP   P Y  V  VV  L   N+     +   + + ++  P +NAFV P+G++F+
Sbjct:   227 FKNDLLPEEDPRYLTVKKVVYHLTQCNQDVPGVSEINWVVHVVHSPKVNAFVLPNGQVFV 286

Query:   274 FTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP-DLG 332
             FTG+        +L+ +L HE++H +L H AEK S    L+ L ++ L +IW + P D  
Sbjct:   287 FTGLLNSVTDMHQLSFLLGHEIAHAVLGHAAEKASLVHLLDFLGMIFLTMIWAICPRDSL 346

Query:   333 AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEV 381
             A++ Q +   L+  +F+ P+ R +E EAD+ I  +L  +  ++  A  V
Sbjct:   347 AVLGQWIQSKLQEYMFDRPYSRTLEAEADK-IGLQLAAKACVDVRASSV 394

GO:0002024 "diet induced thermogenesis" evidence=ISO;ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO;ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;ISS

GO:0006629 "lipid metabolic process" evidence=ISO;ISS

GO:0006950 "response to stress" evidence=ISO;ISS

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO;ISS

GO:0034982 "mitochondrial protein processing" evidence=IEA;ISO

GO:0042407 "cristae formation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO;ISS

UNIPROTKB|E1C7A6 OMA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 94/302 (31%), Positives = 175/302 (57%)

Query:    88 NHQLQVFNIRVLRCFHTSQPKNALP-GFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQ 146
             NH     N +++R F TS    A P    ++I KP+ ++  AI++ R  RKWW  L P++
Sbjct:    80 NH-FSAGNTQLVRSFRTSPSLRAAPFPLFWIIIKPVQKLF-AILVGRSIRKWWKALPPNK 137

Query:   147 KKIILSQIKKHQDKIAGITLTSIGLAYI-YYFLHLETCPITGRQKFIIVKPNQLNDVTQI 205
             +++    ++ ++ KI  + ++S+G+ ++ +YF HLE  PITGR + ++     L  ++Q+
Sbjct:   138 RELFKESVRTNKWKIL-LGVSSLGVLFVVFYFTHLEETPITGRARLLVFGKEHLRQLSQV 196

Query:   206 AYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFV 265
              Y  ++E++ +++LP     Y+ V  VV  L ++NK   + +   + I ++D+P +NAFV
Sbjct:   197 EYSMWMEKYESKMLPETDARYQVVKRVVGHLSESNKDIPQVSALTWAIHVVDEPEVNAFV 256

Query:   266 FPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIW 325
              P+G +F+FTG+        +L+ +L HE++H +L+H  EK S   FL+ L ++ L +IW
Sbjct:   257 LPNGEVFVFTGLLNAVSDIHQLSFILGHEIAHAVLEHAIEKASLVHFLDFLSLIFLTMIW 316

Query:   326 FLLP-DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLK 384
              + P D+ A+V Q +   L+  IF+ P+ + +E EAD+ +  +   +  ++  A  V  +
Sbjct:   317 AICPHDILAVVGQRIQSKLQEFIFDRPYSKTLEAEADK-VGLQFAAKACVDVRASSVFWQ 375

Query:   385 LM 386
             LM
Sbjct:   376 LM 377

GO:0002024 "diet induced thermogenesis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZN3	OMA1_BOVIN	3, ., 4, ., 2, 4, ., -	0.3484	0.8105	0.7361	yes	N/A
Q9D8H7	OMA1_MOUSE	3, ., 4, ., 2, 4, ., -	0.3534	0.7115	0.6487	yes	N/A
Q96E52	OMA1_HUMAN	3, ., 4, ., 2, 4, ., -	0.3557	0.7305	0.6622	yes	N/A
E9QBI7	OMA1_DANRE	3, ., 4, ., 2, 4, ., -	0.3387	0.7115	0.7071	yes	N/A
D3ZS74	OMA1_RAT	3, ., 4, ., 2, 4, ., -	0.3340	0.8421	0.7936	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	475
pfam01435	223	pfam01435, Peptidase_M48, Peptidase family M48	6e-27
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	5e-19
COG4784	479	COG4784, COG4784, Putative Zn-dependent protease [	6e-18
COG0501	302	COG0501, HtpX, Zn-dependent protease with chaperon	2e-17

>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48

 Score =  107 bits (270), Expect = 6e-27
 Identities = 61/218 (27%), Positives = 86/218 (39%), Gaps = 44/218 (20%)

Query: 227 KRVGAVVKRLIDANKVYMEHNNFKYP-ITIIDDPLINAFVFPDG---RIFMFTGMFQLCQ 282
            R+  VV+RL D+         F    + ++D P  NAF    G   R+ + TG+     
Sbjct: 32  ARLQRVVERLADS-----AGAGFPPWEVYVVDSPQPNAFALGGGKNKRVVVTTGLLL-AL 85

Query: 283 TDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDD 342
           T+DELA VL HE+ H   +H  E +S                         ++  +LL  
Sbjct: 86  TEDELAAVLGHEIGHIKARHSVESMS-----------------------QGLLLNLLLLL 122

Query: 343 LKSIIFELPFEREMETEADESIIF-----ELPFEREMETEADEVGLKL-----MARACYD 392
             + +                 IF      LP+ R+ E EADE G +L     +ARA Y 
Sbjct: 123 GAAALGGRALGFNANGFLTALGIFLLQLLLLPYSRKQEYEADEAGARLGGDKDLARAGYK 182

Query: 393 VRVAPLFWQKMALKETQDQVGPKM-EEYLSTHPSHENR 429
            R A  F  K+A +      G K+  E LSTHP    R
Sbjct: 183 PRAAVKFLAKLAAENLSRVSGGKLYPELLSTHPPLVER 220

Length = 223

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 32/194 (16%)

Query: 251 YPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNK 310
           +   +++D  INAF  P G + + TG+    + + ELA V++HE+ H   +H+A      
Sbjct: 94  FTFFLVNDDSINAFATPGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLA------ 147

Query: 311 TFLEILYIVPLMIIWFLLPDLGAIV-----TQVLLDDLKSIIFELPFEREMETEADESII 365
             +E       M I  +L  + A +         +                   A     
Sbjct: 148 RSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGI-----------------AGALAGAA 190

Query: 366 -FELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHP 424
             +L F R+ E EAD +G+  + RA YD +  P F++++A +      G +  EYL THP
Sbjct: 191 QGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQLRY---GGQPPEYLLTHP 247

Query: 425 SHENRANNLESKMK 438
             E R  +L ++ +
Sbjct: 248 LPEERIADLRNRAE 261

Length = 484

>gnl|CDD|227123 COG4784, COG4784, Putative Zn-dependent protease [General function prediction only]

 Score = 85.7 bits (212), Expect = 6e-18
 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 37/206 (17%)

Query: 231 AVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATV 290
            +V R++ A     E+    Y ITI++ P INAF  P G +++  G+  L     E+A V
Sbjct: 68  RMVARIVGALTAVSENPQQTYRITILNSPNINAFALPGGYLYITRGLLALANDSSEVAAV 127

Query: 291 LSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFEL 350
           L+HE+ H    H  ++   +    I                  +V +VL  D        
Sbjct: 128 LAHEMGHVTANHGIQRQQREAAEVI---------------ASRVVAEVLGSDAA------ 166

Query: 351 PFEREMETEADESII----FELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALK 406
                      +++I        F R  E +AD +G+K++  A YD   A  F Q MA  
Sbjct: 167 ---------GKQALIRGKLRLAQFSRNQELQADAIGIKMLGEAGYDPYAAARFLQSMAAY 217

Query: 407 ETQDQVGPKMEE---YLSTHPSHENR 429
                V    ++   +L++HP+   R
Sbjct: 218 TDFRSVSGAADQSLDFLASHPNTPQR 243

Length = 479

>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

 Score = 82.7 bits (204), Expect = 2e-17
 Identities = 47/201 (23%), Positives = 72/201 (35%), Gaps = 27/201 (13%)

Query: 249 FKYPITIIDDPLINAFVFP----DGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA 304
               + I++ P  NAF       +GR+ + TG+  L   DDEL  VL+HEL H   +H  
Sbjct: 116 HMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDL-LNDDELEAVLAHELGHIKNRHT- 173

Query: 305 EKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESI 364
             L   T   +L    +++    L         + L  L  ++                 
Sbjct: 174 --LVRLTLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLAT----------- 220

Query: 365 IFELPFEREMETEADEVGLKL-----MARACYD-VRVAPLFWQKMALKETQDQVGPKMEE 418
           +  L F R+ E EAD    KL     +A A     R++     K  +       G +++ 
Sbjct: 221 LLVLAFSRKREYEADRFAAKLTGPEKLASALQKLARLSGRANSKAFI--ASGFSGGRLQA 278

Query: 419 YLSTHPSHENRANNLESKMKE 439
             STHP    R   L      
Sbjct: 279 LFSTHPPLAERIAALRQLALT 299

Length = 302

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	475
KOG2661|consensus	424		100.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	100.0
COG4784	479	Putative Zn-dependent protease [General function p	100.0
PRK01345	317	heat shock protein HtpX; Provisional	99.94
PRK03982	288	heat shock protein HtpX; Provisional	99.94
PRK03001	283	M48 family peptidase; Provisional	99.94
PRK02870	336	heat shock protein HtpX; Provisional	99.93
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	99.93
PRK03072	288	heat shock protein HtpX; Provisional	99.93
COG0501	302	HtpX Zn-dependent protease with chaperone function	99.92
PRK04897	298	heat shock protein HtpX; Provisional	99.92
PRK02391	296	heat shock protein HtpX; Provisional	99.92
PRK05457	284	heat shock protein HtpX; Provisional	99.91
PRK01265	324	heat shock protein HtpX; Provisional	99.9
KOG2719|consensus	428		99.72
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	98.2
PF10463	206	Peptidase_U49: Peptidase U49; InterPro: IPR019504	97.67
PRK09672	305	phage exclusion protein Lit; Provisional	97.67
PF04228	292	Zn_peptidase: Putative neutral zinc metallopeptida	97.2
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	97.06
COG4219	337	MecR1 Antirepressor regulating drug resistance, pr	96.85
PF13203	292	DUF2201_N: Putative metallopeptidase domain	96.13
COG2321	295	Predicted metalloprotease [General function predic	94.27
PRK04351	149	hypothetical protein; Provisional	93.85
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	92.33
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	92.12
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	92.12
smart00731	146	SprT SprT homologues. Predicted to have roles in t	89.67
PF04298	222	Zn_peptidase_2: Putative neutral zinc metallopepti	88.77
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	87.36
COG1451	223	Predicted metal-dependent hydrolase [General funct	87.04
PF12388	211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	86.23
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	86.02
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	85.16
COG2856	213	Predicted Zn peptidase [Amino acid transport and m	82.03
PF02031	132	Peptidase_M7: Streptomyces extracellular neutral p	82.03
COG2738	226	Predicted Zn-dependent protease [General function	80.62
COG3590	654	PepO Predicted metalloendopeptidase [Posttranslati	80.1

>KOG2661|consensus

Probab=100.00  E-value=5.3e-77  Score=581.72  Aligned_cols=386  Identities=35%  Similarity=0.586  Sum_probs=353.7

Q ss_pred             HHHhccCCCccccCCCCCCCCCCCCCCCCChhhhhhhhhhhccccccccceeeeeecCcccccchh-------hcccccc
Q psy768           15 LLRYIGHTSPECLETLDTPRNIPASRSSINTELEQDTIGCILSCDKKYSTCLNFQITGHQDKHLTR-------VLFHQSA   87 (475)
Q Consensus        15 ~~~~~g~~~~ec~~~~~~~~n~p~~~p~~~~~~e~~~~~~il~~~~~e~~~v~~~~~~~~~s~~~q-------~~p~~~~   87 (475)
                      .+.|+|.++++|++..++|+|++|+.+++|+     +.+-+.+.+++|.|.++++|+.|||.+.+|       ++|+.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~l~~~~~~~i~~~t~~~t~~n~~~~~~~~~~~~t~v~S~~v   96 (424)
T KOG2661|consen   22 VNKYQGLGVNQCDRWSFLPGNFHFYSTFNNK-----RTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSV   96 (424)
T ss_pred             HHHHhccCcchhhhHhhCCCcceeeeeecch-----hcccccccCCccceecccccceehhhhhhccchhhhhccccccc
Confidence            5789999999999999999999999999998     999999999999999999999999999999       8999999


Q ss_pred             cccccccccccccccccCCC-CCCcchHHHHhhccceeeeeeeecchhHHHHHHhcCchhhHHHHHHHHhcccch-HHHH
Q psy768           88 NHQLQVFNIRVLRCFHTSQP-KNALPGFIYLIFKPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKI-AGIT  165 (475)
Q Consensus        88 ~~~~~~~~~~~~r~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~r~~~~~~~~~~~~~~-~~~~  165 (475)
                      .+|++.-..|.. .|||.+| +..|.|...+.+                 +||+.+.|+++....+.++++.|++ +|+ 
T Consensus        97 ~l~~~~~s~Rn~-Ng~~y~rFqsnp~~ys~~~r-----------------~~~~sfkpn~~dk~f~n~rk~f~~lf~G~-  157 (424)
T KOG2661|consen   97 LLPLSPASIRNI-NGHTYPRFQSNPVPYSLMIR-----------------KWWQSFKPNKKDKVFENIRKNFWKLFLGL-  157 (424)
T ss_pred             ccccchhhhhcc-CccccchhhcCCccHHHHHH-----------------HHHHhcCCCCccchhhhHHHHHHHHHhhc-
Confidence            999988888888 9999999 888877776544                 3999999999999999888888877 443 


Q ss_pred             HHHHHHHHHHHHhhccccCCCCccceeccCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Q psy768          166 LTSIGLAYIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKRVGAVVKRLIDANKVYME  245 (475)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~P~tgr~~~~~ls~~~e~~lg~~~~~~~~~~~~~~~lp~~dp~~~~v~~i~~rL~~~~~~~p~  245 (475)
                          +++++|||+|+|.+|+|||++|+++|+++|+.||+.+|++++++++++++|..||++-+|++|+.++++++++.|+
T Consensus       158 ----~~~~vfyfthlE~~Pit~Rsrfillskp~ekllge~~ye~im~eyq~~mLp~~hp~sl~V~~vlk~iIea~~~~~s  233 (424)
T KOG2661|consen  158 ----LLFVVFYFTHLEVSPITGRSRFILLSKPQEKLLGELEYEAIMEEYQNDMLPEKHPRSLAVKEVLKHIIEANKDVPS  233 (424)
T ss_pred             ----cceEEEEEeeeeeeccCCcceeeeccCHHHHHhhHHHHHHHHHHhcCccCCcCCchhhHHHHHHHHHHHHhccCCc
Confidence                4467799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeEEEEecCCcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy768          246 HNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIW  325 (475)
Q Consensus       246 ~~~~~~~v~Vv~~~~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~  325 (475)
                      +++..|+|+||++|.+|||++|||+|||++|+|..++|||+||+|||||+||.++||.+|.+++..+++++++++.+++|
T Consensus       234 lsgIkWeihVVndPipNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVarH~AEki~k~~~~siLgLvlyt~~~  313 (424)
T KOG2661|consen  234 LSGIKWEIHVVNDPIPNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVARHAAEKIGKVHLLSILGLVLYTMIW  313 (424)
T ss_pred             ccCceeEEEEecCCCCceeeccCCeEEEEechhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HhccchHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHh
Q psy768          326 FLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMAL  405 (475)
Q Consensus       326 ~~~~~~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~  405 (475)
                      +..+.          ..+.+++                  +.++|||++|.|||.+|+.+|++|||||+++..+||+|+.
T Consensus       314 a~~~n----------~~Ll~~f------------------lrlPfSRKMEtEADyIGLlLma~Acfdpras~tvwErM~~  365 (424)
T KOG2661|consen  314 AICPN----------DKLLEYF------------------LRLPFSRKMETEADYIGLLLMAKACFDPRASSTVWERMEF  365 (424)
T ss_pred             hccch----------HHHHHHH------------------hcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHHHHHHH
Confidence            76541          1233444                  7899999999999999999999999999999999999998


Q ss_pred             hccccccCC-CcccccCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy768          406 KETQDQVGP-KMEEYLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLFIPR  459 (475)
Q Consensus       406 ~~~~~~~g~-~~~~~lsTHP~~~~RI~~L~~~i~~a~~~~~~~~c~~~~~~~~~~  459 (475)
                      .+  ...|. ..++|+||||+..+||+++++++++|..+||.|+|++.... ++|
T Consensus       366 ~e--gqmg~~~~~eflSTHPSskkRie~~~~lLpqAnvirE~sdcy~e~~p-~~~  417 (424)
T KOG2661|consen  366 VE--GQMGQPKMPEFLSTHPSSKKRIEYLDRLLPQANVIREMSDCYPESNP-DPR  417 (424)
T ss_pred             hh--hhcCCCCCchhhhcCCCccchhHHHHHhchHHHHHHHHhcCChhcCc-chh
Confidence            87  33333 35999999999999999999999999999999999987776 444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=313.73  Aligned_cols=227  Identities=26%  Similarity=0.376  Sum_probs=178.2

Q ss_pred             cccCCCCccceeccCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHH-HHHHHHHHHHHhccccccCCCcceeEEEEecC
Q psy768          181 ETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYK-RVGAVVKRLIDANKVYMEHNNFKYPITIIDDP  259 (475)
Q Consensus       181 ~~~P~tgr~~~~~ls~~~e~~lg~~~~~~~~~~~~~~~lp~~dp~~~-~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~  259 (475)
                      ...|.+|......+|+++|..+|+..    +.+..+.+....||+++ +|++++++|++++.    ..+.+|+|++|+++
T Consensus        31 ~~lp~ig~~~~s~ls~~qev~~g~~~----~~Qlr~~~~~i~D~el~~yv~~~g~rL~~~a~----~~~~~f~f~lV~d~  102 (484)
T COG4783          31 DLLPDIGVSAGSTLSPAQEVALGDPA----NAQLRGSVPLIRDPELEEYVNSLGQRLAAAAD----LVKTPFTFFLVNDD  102 (484)
T ss_pred             hhcchhhhhhhhcCCHHHHHHhhHHH----HHHhccCCCCcCCHHHHHHHHHHHHHHHHhcC----CCCCCeEEEEecCC
Confidence            35788999999999999999999854    44555566778999985 99999999998752    34689999999999


Q ss_pred             CcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHHHHHHHH---HHHHHHHHHHHHHHHh-ccch-HHH
Q psy768          260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKT---FLEILYIVPLMIIWFL-LPDL-GAI  334 (475)
Q Consensus       260 ~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~~~~~~~---l~~~l~~~~~~~i~~~-~~~~-~~~  334 (475)
                      .+||||+|||+|+|++|||...+||+||++|||||+||+..||..+.+....   ...++++.++ ++.+. .++. .+.
T Consensus       103 ~iNAFA~~Gg~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~g-i~aa~a~~~ag~a~  181 (484)
T COG4783         103 SINAFATPGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLG-ILAALAGADAGMAG  181 (484)
T ss_pred             ccchhhcCCceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHH-HHHHHhCccccHHH
Confidence            9999999999999999999999999999999999999999999998776633   2222222222 22222 1221 111


Q ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccccccCC
Q psy768          335 VTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGP  414 (475)
Q Consensus       335 l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~~g~  414 (475)
                      ++.....                     ...-.+.|||++|.|||++|+.++.++||||++|++||+|+....   ..++
T Consensus       182 iag~~a~---------------------~~~g~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~---~~~~  237 (484)
T COG4783         182 IAGALAG---------------------AAQGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQL---RYGG  237 (484)
T ss_pred             HHHHHHH---------------------hhhhhhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH---hcCC
Confidence            1111110                     001357899999999999999999999999999999999999754   2366


Q ss_pred             CcccccCCCCChHHHHHHHHHHHHHH
Q psy768          415 KMEEYLSTHPSHENRANNLESKMKEA  440 (475)
Q Consensus       415 ~~~~~lsTHP~~~~RI~~L~~~i~~a  440 (475)
                      ..|+|++|||-+++||..+++.+.+.
T Consensus       238 ~~p~yl~THPlp~~RIa~lr~ra~q~  263 (484)
T COG4783         238 QPPEYLLTHPLPEERIADLRNRAEQS  263 (484)
T ss_pred             CCChHHhcCCCchhHHHHHHHHHHhC
Confidence            77999999999999999999877653

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=100.00  E-value=3.5e-32  Score=268.07  Aligned_cols=228  Identities=24%  Similarity=0.341  Sum_probs=174.4

Q ss_pred             hccccCCCCccceeccCHHHHH-HHHHHHHHHHHHHhcCCCCCCCCHHHH-HHHHHHHHHHHhccccccCCCcceeEEEE
Q psy768          179 HLETCPITGRQKFIIVKPNQLN-DVTQIAYDNFIEEHGNQVLPLGHPAYK-RVGAVVKRLIDANKVYMEHNNFKYPITII  256 (475)
Q Consensus       179 ~~~~~P~tgr~~~~~ls~~~e~-~lg~~~~~~~~~~~~~~~lp~~dp~~~-~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv  256 (475)
                      .+...|-++...+..+++.++. +||..+.++++.+|++..   +||.++ +|.+|+.+|...+. .|   +..|+|.|+
T Consensus        21 ~~~~~Ps~~p~~v~~v~~n~~laqmgar~hprIla~yggeY---~D~Kler~Vari~g~lt~~S~-~p---~q~YriTil   93 (479)
T COG4784          21 ESGVQPSDNPQTVDNVQKNDPLAQMGARQHPRILATYGGEY---RDPKLERMVARIVGALTAVSE-NP---QQTYRITIL   93 (479)
T ss_pred             ccccCCCCCcchHHHhhccChHhHhhhhhChhHHHhcCCcc---CCHHHHHHHHHHHhHhhhhcc-CC---CceEEEEEe
Confidence            3456788888778888887654 599988999999998654   677775 79999999987652 23   578999999


Q ss_pred             ecCCcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q psy768          257 DDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVT  336 (475)
Q Consensus       257 ~~~~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~l~  336 (475)
                      |+|.+||||+|||++||+.|||..++|+.|||+||+|||||+..+|..++.++.....+.+-++...+   ..+..+-..
T Consensus        94 nSP~INAFALPGGYlYitRGLlAland~sEvAAVl~HEmgHVtAnHgi~rQ~~e~a~~ia~rvva~vl---~~~~agk~A  170 (479)
T COG4784          94 NSPNINAFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQRQQREAAEVIASRVVAEVL---GSDAAGKQA  170 (479)
T ss_pred             cCCCccccccCCceEEEehhHHHHcCCHHHHHHHHHhhhhheecchhHHHHHHHHHHHHHHHHHHHHh---CCcchhhHH
Confidence            99999999999999999999999999999999999999999999999998877655443332222111   001111111


Q ss_pred             HHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcccccc-CC-
Q psy768          337 QVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQV-GP-  414 (475)
Q Consensus       337 ~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~~-g~-  414 (475)
                      ...+                       .+....|||+||.|||.+|++++.+|||||.++..|++.|+........ |. 
T Consensus       171 ~~rG-----------------------klrla~fsRnqELqAD~iG~~~lgeAGYDP~A~~rfl~sm~ay~~F~s~~g~a  227 (479)
T COG4784         171 LIRG-----------------------KLRLAQFSRNQELQADAIGIKMLGEAGYDPYAAARFLQSMAAYTDFRSVSGAA  227 (479)
T ss_pred             Hhhh-----------------------hHHHhhhccchhhhhhhhhHHHHHhcCCChHHHHHHHHHHHhhhhhcccCcch
Confidence            1110                       0145689999999999999999999999999999999999977732221 21 


Q ss_pred             -CcccccCCCCChHHHHHHHHHHHHH
Q psy768          415 -KMEEYLSTHPSHENRANNLESKMKE  439 (475)
Q Consensus       415 -~~~~~lsTHP~~~~RI~~L~~~i~~  439 (475)
                       ..-+||+|||.+.+||+..+.-..+
T Consensus       228 dqsldfl~sHPntpqRiqla~~hARq  253 (479)
T COG4784         228 DQSLDFLASHPNTPQRIQLARRHARQ  253 (479)
T ss_pred             hhhcchhhcCCCChHHHHHHHHHHHh
Confidence             1268999999999999877665433

>PRK01345 heat shock protein HtpX; Provisional

Probab=99.94  E-value=6e-26  Score=230.53  Aligned_cols=193  Identities=22%  Similarity=0.280  Sum_probs=124.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCC----CeEEEehhhhhhcCCHHHHHHHHHH
Q psy768          218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPD----GRIFMFTGMFQLCQTDDELATVLSH  293 (475)
Q Consensus       218 ~lp~~dp~~~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpg----G~IvV~~GLL~~l~~edELaaVLAH  293 (475)
                      +.|.++|+   +.+++++|+... .+|     ..+|+++|++.+|||++|.    +.|+|++||++.+ |+|||++||||
T Consensus        61 v~~~~~p~---L~~~v~~La~~a-gi~-----~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L-~~dEL~aVlAH  130 (317)
T PRK01345         61 VDERSAPE---LYRMVRDLARRA-GLP-----MPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL-SPEEVAGVMAH  130 (317)
T ss_pred             CCcccCHH---HHHHHHHHHHHc-CCC-----CCcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC-CHHHHHHHHHH
Confidence            44555554   555666665543 122     2479999999999999963    3699999999998 57999999999


Q ss_pred             HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc-cc----hHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhcc
Q psy768          294 ELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLL-PD----LGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFEL  368 (475)
Q Consensus       294 ElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~~~-~~----~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~  368 (475)
                      ||||++++|..+......+..++..+.....+... .+    ....++..+    ..++  .|+         ...++.+
T Consensus       131 ElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~--~~~---------~~~l~~~  195 (317)
T PRK01345        131 ELAHVKNRDTLTMTITATLAGAISMLANFAFFFGGNRENNNGPLGLVGTLA----AMIV--APL---------AAMLVQM  195 (317)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHH----HHHH--HHH---------HHHHHHH
Confidence            99999999998765443332222111111111110 00    001111110    0000  010         1113677


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccc----cc---------------cCCCcccccCCCCChHHH
Q psy768          369 PFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQ----DQ---------------VGPKMEEYLSTHPSHENR  429 (475)
Q Consensus       369 ~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~----~~---------------~g~~~~~~lsTHP~~~~R  429 (475)
                      .|||.+|++||++|++++    .||++++++|+||......    ..               .+....+||+|||++++|
T Consensus       196 ~~SR~rE~~AD~~A~~lt----g~p~~L~~AL~KL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfsTHP~~~eR  271 (317)
T PRK01345        196 AISRTREYAADRRGAEIC----GNPLWLASALGKIERGAHGVPNEEAERNPATAHMFIINPLSGEGMDNLFSTHPATENR  271 (317)
T ss_pred             HHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhhccCcccccccChHHHHHHhcCCccccchhHHhcCCcChHHH
Confidence            899999999999999875    3999999999999965310    00               011124799999999999


Q ss_pred             HHHHHHHHHH
Q psy768          430 ANNLESKMKE  439 (475)
Q Consensus       430 I~~L~~~i~~  439 (475)
                      |++|+++..+
T Consensus       272 I~~L~~~~~~  281 (317)
T PRK01345        272 IAALQRMAGE  281 (317)
T ss_pred             HHHHHHHHHh
Confidence            9999998766

>PRK03982 heat shock protein HtpX; Provisional

Probab=99.94  E-value=1.3e-25  Score=225.74  Aligned_cols=190  Identities=23%  Similarity=0.270  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeC----CCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccH
Q psy768          228 RVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFP----DGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHV  303 (475)
Q Consensus       228 ~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalp----gG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~  303 (475)
                      .+++.++++++..+ +|     ..++++++++.+|||++|    +|.|+|++||++.+ |+|||++|||||+||++++|.
T Consensus        69 ~L~~~v~~la~~~g-~~-----~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~  141 (288)
T PRK03982         69 ELYRIVERLAERAN-IP-----KPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDT  141 (288)
T ss_pred             HHHHHHHHHHHHcC-CC-----CCeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCH
Confidence            45555566655431 22     238999999999999995    45688999999998 689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-ccchH---HHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHH
Q psy768          304 AEKLSNKTFLEILYIVPLMIIWFL-LPDLG---AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEAD  379 (475)
Q Consensus       304 ~~~~~~~~l~~~l~~~~~~~i~~~-~~~~~---~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD  379 (475)
                      .+......+...+..+.....+.. ..+..   ...+..++..+..++  .++         ...++.+.|||++|+|||
T Consensus       142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~l~~~~~SR~~E~~AD  210 (288)
T PRK03982        142 LIQTIAATLAGAIMYLAQWLSWGLWFGGGGRDDRNGGNPIGSLLLIIL--API---------AATLIQFAISRQREFSAD  210 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchHHHHHHHHHH--HHH---------HHHHHHHHHhHHHHHHHh
Confidence            877655433221111111111110 00100   000000000000010  000         012366789999999999


Q ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHhhcccc-c----------------cCCCcccccCCCCChHHHHHHHHHHHHH
Q psy768          380 EVGLKLMARACYDVRVAPLFWQKMALKETQD-Q----------------VGPKMEEYLSTHPSHENRANNLESKMKE  439 (475)
Q Consensus       380 ~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~-~----------------~g~~~~~~lsTHP~~~~RI~~L~~~i~~  439 (475)
                      ++|+++    +.+|.+++++++|++...+.. .                .+....+|++|||++++||+++++..++
T Consensus       211 ~~A~~~----~~~p~~l~~aL~kL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~sTHP~~~eRI~~l~~~~~~  283 (288)
T PRK03982        211 EGGARL----TGNPLALANALQKLEKGVRYIPLKNGNPATAHMFIINPFRGQFLANLFSTHPPTEERIERLLEMAQE  283 (288)
T ss_pred             HHHHHH----hCCHHHHHHHHHHHHhhhccCCCCCCCHHHHhHhhcCCCCCchhhHHhCCCcCHHHHHHHHHHHHHh
Confidence            999886    468999999999998653110 0                0111257999999999999999987644

>PRK03001 M48 family peptidase; Provisional

Probab=99.94  E-value=2e-25  Score=223.78  Aligned_cols=186  Identities=19%  Similarity=0.270  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCCC----eEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccH
Q psy768          228 RVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDG----RIFMFTGMFQLCQTDDELATVLSHELSHTLLKHV  303 (475)
Q Consensus       228 ~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpgG----~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~  303 (475)
                      .+.+++++++...+ +|     .-+++++|++.+|||++|.+    +|+|++||++.+ |+|||++||||||||++++|.
T Consensus        68 ~L~~~v~~la~~~g-~~-----~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~  140 (283)
T PRK03001         68 QFYRMVRELAQRAG-LP-----MPKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDI  140 (283)
T ss_pred             HHHHHHHHHHHHcC-CC-----CCeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCCh
Confidence            45566666655431 22     23899999999999999753    599999999998 689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch--H--HHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHH
Q psy768          304 AEKLSNKTFLEILYIVPLMIIWFLLPDL--G--AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEAD  379 (475)
Q Consensus       304 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~--~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD  379 (475)
                      ........+..++..+.....+....+.  .  ......    +..++  .++         ...++.+.|||.+|++||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~---------~~~~~~~~~SR~~E~~AD  205 (283)
T PRK03001        141 LISTISATMAGAISALANFAMFFGGRDENGRPVNPIAGI----AVAIL--APL---------AASLIQMAISRAREFEAD  205 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccchHHHH----HHHHH--HHH---------HHHHHHHHHhHHHHHHHh
Confidence            8765443222222211111111110000  0  000000    00000  000         011366789999999999


Q ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHhhccccc-------------------cCCCcccccCCCCChHHHHHHHHHHHHH
Q psy768          380 EVGLKLMARACYDVRVAPLFWQKMALKETQDQ-------------------VGPKMEEYLSTHPSHENRANNLESKMKE  439 (475)
Q Consensus       380 ~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~-------------------~g~~~~~~lsTHP~~~~RI~~L~~~i~~  439 (475)
                      ++|+++    ++||++++++++|+...+....                   .++....|++|||++++||++++++.++
T Consensus       206 ~~a~~l----~~~p~~l~~AL~Kl~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~l~~THP~~~eRI~~l~~~~~~  280 (283)
T PRK03001        206 RGGARI----SGDPQALASALDKIHRYASGIPFQAAEAHPATAQMMIINPLSGGGLANLFSTHPSTEERIARLMAMART  280 (283)
T ss_pred             HHHHHH----hCCHHHHHHHHHHHHhhhccCCcccccCCHHHHHHHhcCCCCcchHHHHHcCCcCHHHHHHHHHHHHHh
Confidence            999886    4699999999999997652100                   0011246899999999999999987644

>PRK02870 heat shock protein HtpX; Provisional

Probab=99.93  E-value=3.1e-25  Score=225.99  Aligned_cols=187  Identities=27%  Similarity=0.366  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeC----CCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhccc
Q psy768          227 KRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFP----DGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKH  302 (475)
Q Consensus       227 ~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalp----gG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH  302 (475)
                      .++.++++++....+ .|    ..++|++++++.+||||+|    +++|+||+||++.+ |+|||++||||||||+.++|
T Consensus       115 ~~L~~~ve~La~~ag-~p----~~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~d  188 (336)
T PRK02870        115 RQLYNVVEELLVAAG-LR----FMPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGD  188 (336)
T ss_pred             HHHHHHHHHHHHHcC-CC----CCCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHccc
Confidence            478888888877542 22    2469999999999999994    67899999999998 68999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHH
Q psy768          303 VAEKLSNKTFLEILYIVPLMIIWFLLPD---LGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEAD  379 (475)
Q Consensus       303 ~~~~~~~~~l~~~l~~~~~~~i~~~~~~---~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD  379 (475)
                      .........+..++..+....++...++   ...... .+...+..++  +|+         ...++.+.+||.+|++||
T Consensus       189 i~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~l~l~~~--~~~---------~~~ll~~~iSR~rEy~AD  256 (336)
T PRK02870        189 IRLTLCVGVLSNIMLIVADFLFYSFMGNRRNSGANRA-RMIILILRYV--LPI---------LTVLLMLFLSRTREYMAD  256 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchh-HHHHHHHHHH--HHH---------HHHHHHHHHHHHHHHHHh
Confidence            8665433332222111111111111111   000000 0000000000  111         112367889999999999


Q ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHhhccccc-------------------cC------CCcccccCCCCChHHHHHHHH
Q psy768          380 EVGLKLMARACYDVRVAPLFWQKMALKETQDQ-------------------VG------PKMEEYLSTHPSHENRANNLE  434 (475)
Q Consensus       380 ~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~-------------------~g------~~~~~~lsTHP~~~~RI~~L~  434 (475)
                      ++|++++.    ||.+++++++|+........                   ..      ....++|||||++++||++|+
T Consensus       257 ~~Aa~ltg----~p~aLasAL~KL~~~~~~~~~~~~~~~~~~~~~~a~~~i~~p~~~~~~~~~~LfsTHPp~e~RI~rL~  332 (336)
T PRK02870        257 AGAVELMR----DNEPMARALQKISNDHAQNDEQYAYKHTDHESTRRAAYLFDPAGISPGSLSDAFSTHPSIENRLAALG  332 (336)
T ss_pred             HHHHHHhC----CHHHHHHHHHHHHhccccCccccccccccCChhhhhhhccCCcccccccHhHHHcCCCCHHHHHHHHh
Confidence            99988864    89999999999986442110                   00      012468999999999999997


Q ss_pred             H
Q psy768          435 S  435 (475)
Q Consensus       435 ~  435 (475)
                      .
T Consensus       333 ~  333 (336)
T PRK02870        333 G  333 (336)
T ss_pred             h
Confidence            5

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=99.93  E-value=4e-26  Score=219.44  Aligned_cols=185  Identities=28%  Similarity=0.319  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCCCe---EEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHH
Q psy768          228 RVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDGR---IFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA  304 (475)
Q Consensus       228 ~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpgG~---IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~  304 (475)
                      ++++++++++...+    ....+++++|++++.+|||++|+|.   |+|++||++.+ |+|||++|||||+||+.++|..
T Consensus        32 ~L~~~v~~l~~~~~----~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~~~-~~~el~aVlaHElgH~~~~h~~  106 (226)
T PF01435_consen   32 ELRRIVEELARRAG----LGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLESL-SEDELAAVLAHELGHIKHRHIL  106 (226)
T ss_dssp             HHHHHHHHHHHHHH----CTSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHHHS-SHHHHHHHHHHHHHHHHTTHCC
T ss_pred             HHHHHHHHHHHHhc----CCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhhcc-cHHHHHHHHHHHHHHHHcCCcc
Confidence            55555666555431    1124579999999999999999998   99999999665 7899999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHH
Q psy768          305 EKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLK  384 (475)
Q Consensus       305 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~  384 (475)
                      +.+....+..++..+....+...  .......... ......+          .  ....++...+||.+|++||++|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~----------~--~~~~~~~~~~sr~~E~~AD~~a~~  171 (226)
T PF01435_consen  107 KSLLISLLLSILFFALLALLIGS--MSLFSAFGFI-DILGILI----------A--FLFQLLTNAFSRRQEYEADRYAAR  171 (226)
T ss_dssp             CCCCHHH-HHHHHHHHHT-------HHHHHHHH-----------------------HHSTT------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhc-ccchhhH----------H--HHHHHhhcchhHHHHHHHHHHHHH
Confidence            77544443333222211111000  0000000000 0000000          0  111237789999999999999999


Q ss_pred             H------HHHcCCCchhHHHHHHHHHhhcccc-ccCCCcccccCCCCChHHHHHH
Q psy768          385 L------MARACYDVRVAPLFWQKMALKETQD-QVGPKMEEYLSTHPSHENRANN  432 (475)
Q Consensus       385 l------l~~AGydp~a~~~~l~kl~~~~~~~-~~g~~~~~~lsTHP~~~~RI~~  432 (475)
                      +      |.++|+++..+.++|+++....... ..+.....+++|||++.+||++
T Consensus       172 ~~~~~~~l~~a~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~  226 (226)
T PF01435_consen  172 LGGDPALLARALYKPAAAISALEKLAEANSMRPDSDWRYSSLFSTHPSTEERIAA  226 (226)
T ss_dssp             H------HHHTTS-TTHHHHHHHHHT-----------------------HHHHHH
T ss_pred             hcCCcHHHHHhCCCHHHHHHHHHHHHHHhccccCCccccchhcCCCcCHHHHhCc
Confidence            9      9999999999999999998733111 1122337889999999999975

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK03072 heat shock protein HtpX; Provisional

Probab=99.93  E-value=3.4e-25  Score=222.43  Aligned_cols=193  Identities=22%  Similarity=0.265  Sum_probs=122.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCC----CeEEEehhhhhhcCCHHHHHHHHHH
Q psy768          218 VLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPD----GRIFMFTGMFQLCQTDDELATVLSH  293 (475)
Q Consensus       218 ~lp~~dp~~~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpg----G~IvV~~GLL~~l~~edELaaVLAH  293 (475)
                      +.|.++|+   +.+++++|....+ +|     .-+++++|++.+|||+++.    +.|+|++||++.+ |+|||++||||
T Consensus        64 v~~~~~p~---L~~~v~~la~~~g-~p-----~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAH  133 (288)
T PRK03072         64 VSEVQAPA---MYRIVRELSTAAR-QP-----MPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGH  133 (288)
T ss_pred             CChhhhHH---HHHHHHHHHHHcC-CC-----CCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHH
Confidence            45555554   4444455544321 22     2379999999999999963    2499999999998 67999999999


Q ss_pred             HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH-Hhcc---c--hHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhc
Q psy768          294 ELSHTLLKHVAEKLSNKTFLEILYIVPLMIIW-FLLP---D--LGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFE  367 (475)
Q Consensus       294 ElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~-~~~~---~--~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~  367 (475)
                      |+||+.++|.........+..++..+.....+ ....   +  ....++..+    ..++  .|+         ...++.
T Consensus       134 ElgHi~~~d~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~--~~~---------~~~~~~  198 (288)
T PRK03072        134 ELSHVYNRDILISSVAGALASVITYLANMAMFAGMFGGRRDNDGPNPLALLL----VSLL--GPI---------AATVIQ  198 (288)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHH----HHHH--HHH---------HHHHHH
Confidence            99999999999765443332222211111111 1100   0  001111100    0011  010         112366


Q ss_pred             cccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccccc-c------------------CCCcccccCCCCChHH
Q psy768          368 LPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQ-V------------------GPKMEEYLSTHPSHEN  428 (475)
Q Consensus       368 ~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~-~------------------g~~~~~~lsTHP~~~~  428 (475)
                      +.|||.+|++||++|+++.    .||++++++|+||........ .                  +.....|++|||++++
T Consensus       199 ~~~SR~rE~~AD~~A~~l~----~~p~~La~AL~KL~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~l~sTHP~~~e  274 (288)
T PRK03072        199 LAISRSREYQADESGAELT----GDPLALASALRKISGGVQAAPLPPEPQLASQAHLMIANPFRAGGIGRLFSTHPPMAD  274 (288)
T ss_pred             HHHHhHHHHHHhHHHHHHh----CCHHHHHHHHHHHHhccccCCCCccccchhhhhhhhcCcccchHHHHHHcCCcCHHH
Confidence            7899999999999998874    599999999999986441100 0                  0112578999999999


Q ss_pred             HHHHHHHHHHH
Q psy768          429 RANNLESKMKE  439 (475)
Q Consensus       429 RI~~L~~~i~~  439 (475)
                      ||++|++...+
T Consensus       275 RI~~L~~~~~~  285 (288)
T PRK03072        275 RIARLEQMAGR  285 (288)
T ss_pred             HHHHHHHHhhh
Confidence            99999977543

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.3e-24  Score=218.24  Aligned_cols=188  Identities=26%  Similarity=0.300  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCC----CeEEEehhhhhhcCCHHHHHHHHHHHHHhhhccc
Q psy768          227 KRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPD----GRIFMFTGMFQLCQTDDELATVLSHELSHTLLKH  302 (475)
Q Consensus       227 ~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpg----G~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH  302 (475)
                      ......+.++...+.     .+..++++|++++.+|||++|+    |+|+||+||++.+ |+|||++|||||+||+++||
T Consensus        99 ~~~~~~v~~~a~~~~-----~~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd  172 (302)
T COG0501          99 AVLLLKVAELARQAG-----IPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRH  172 (302)
T ss_pred             HHHHHHHHHHHHHCC-----CCCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhccc
Confidence            344445555544321     1347899999999999999998    6899999999976 68999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHH
Q psy768          303 VAEKLSNKTFLEILYIVPLM-IIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEV  381 (475)
Q Consensus       303 ~~~~~~~~~l~~~l~~~~~~-~i~~~~~~~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~  381 (475)
                      ...++............+.. +.+.............+...+...               ....+.+.|||.+|++||++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~SR~~E~~AD~~  237 (302)
T COG0501         173 TLVRLTLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALF---------------LATLLVLAFSRKREYEADRF  237 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhHHhhhhc
Confidence            99865544433222222111 111110000000011100000000               01127889999999999999


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhcc----ccccCCC-----cccccCCCCChHHHHHHHHHHHHHH
Q psy768          382 GLKLMARACYDVRVAPLFWQKMALKET----QDQVGPK-----MEEYLSTHPSHENRANNLESKMKEA  440 (475)
Q Consensus       382 gl~ll~~AGydp~a~~~~l~kl~~~~~----~~~~g~~-----~~~~lsTHP~~~~RI~~L~~~i~~a  440 (475)
                      |++++.     |+.+...++|+....+    .....+.     ...+++|||++.+||++|+++.+..
T Consensus       238 a~~l~~-----~~~l~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~stHP~~~~Ri~~L~~~~~~~  300 (302)
T COG0501         238 AAKLTG-----PEKLASALQKLARLSGRANSKAFIASGFSGGRLQALFSTHPPLAERIAALRQLALTV  300 (302)
T ss_pred             hhhccC-----hHHHHHHHHHHHhhhcccchhhhhcCcccccchHHHHhcCCCHHHHHHHHHHHHHhh
Confidence            988874     7888999999887431    1111111     1479999999999999999987653

>PRK04897 heat shock protein HtpX; Provisional

Probab=99.92  E-value=1.1e-23  Score=212.64  Aligned_cols=186  Identities=19%  Similarity=0.265  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCC----CeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccH
Q psy768          228 RVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPD----GRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHV  303 (475)
Q Consensus       228 ~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpg----G~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~  303 (475)
                      ++.+++++++.... +|     .-++++++++.+|||++|.    +.|+|++||++.+ |+|||++|||||+||++++|.
T Consensus        81 ~L~~~v~~la~~~g-ip-----~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~  153 (298)
T PRK04897         81 ELWHIVEDMAMVAQ-IP-----MPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIM-NREELEGVIGHEISHIRNYDI  153 (298)
T ss_pred             HHHHHHHHHHHHcC-CC-----CCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhC-CHHHHHHHHHHHHHHHhcCCH
Confidence            46666666665432 22     2389999999999999973    3699999999999 679999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhc------cc-hHH-HHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccc
Q psy768          304 AEKLSNKTFLEILYIVPLMI----IWFLL------PD-LGA-IVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFE  371 (475)
Q Consensus       304 ~~~~~~~~l~~~l~~~~~~~----i~~~~------~~-~~~-~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~S  371 (475)
                      ........+..++..+....    .+...      .+ ..+ .+...+...+..++  .|+         ...++.+.+|
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~--~~~---------~~~ll~~~~S  222 (298)
T PRK04897        154 RLSTIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLIL--APL---------AATLIQLAIS  222 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHH--HHH---------HHHHHHHhhh
Confidence            87654433222221111100    11110      00 000 00000000000000  011         1123567899


Q ss_pred             hhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcccccc----------CCC-----cccccCCCCChHHHHHHHHH
Q psy768          372 REMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQV----------GPK-----MEEYLSTHPSHENRANNLES  435 (475)
Q Consensus       372 R~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~~----------g~~-----~~~~lsTHP~~~~RI~~L~~  435 (475)
                      |.+|++||++|+++.    +||++++++++|+...+.....          .++     ...|++|||++++||++|++
T Consensus       223 R~rE~~AD~~A~~lt----~~p~~La~AL~KL~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~lfsTHP~~~eRI~~L~~  297 (298)
T PRK04897        223 RQREYLADASSVELT----RNPQGLISALEKISNSQPMKHPVDDASAALYISDPLKKKGLSKLFDTHPPIEERIERLKN  297 (298)
T ss_pred             HHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhccccccccChHHHHhccCCCcccchHHHHHcCCcCHHHHHHHHHc
Confidence            999999999988875    6899999999999865421100          011     24689999999999999975

>PRK02391 heat shock protein HtpX; Provisional

Probab=99.92  E-value=5.6e-24  Score=214.21  Aligned_cols=198  Identities=24%  Similarity=0.222  Sum_probs=121.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCCC----eEEEehhhhhhcCCHHHHHHHHH
Q psy768          217 QVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDG----RIFMFTGMFQLCQTDDELATVLS  292 (475)
Q Consensus       217 ~~lp~~dp~~~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpgG----~IvV~~GLL~~l~~edELaaVLA  292 (475)
                      ++.|.++|+   +.+++++++...+ .|     .-++++++++.+|||++|.+    .|+|++||++.+ |+||+++|||
T Consensus        69 ~~~~~~~p~---L~~~v~~la~~~~-~~-----~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVla  138 (296)
T PRK02391         69 IVSEDEYPE---LHAMVERLCALAD-LP-----KPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL-DPDELEAVLA  138 (296)
T ss_pred             ECChhhCHH---HHHHHHHHHHHcC-CC-----CCcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC-CHHHHHHHHH
Confidence            345556664   4455555554321 22     23789999999999999743    489999999998 5799999999


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc-c-c-hHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccc
Q psy768          293 HELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLL-P-D-LGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELP  369 (475)
Q Consensus       293 HElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~~~-~-~-~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~  369 (475)
                      ||+||+.++|.........+..+...+....++... . + .....+.++...+...+         .  .....++.+.
T Consensus       139 HElgHi~~~di~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~l~~~  207 (296)
T PRK02391        139 HELSHVKNRDVAVMTIASFLSTIAFLIVRWGFYFGGFGGRGGGGGGGGILVVILVSLV---------V--WAISFLLIRA  207 (296)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHH---------H--HHHHHHHHHH
Confidence            999999999998754433222222111111111110 0 0 00000000000000000         0  0011125678


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccc----c-----------c----cCCCcccccCCCCChHHHH
Q psy768          370 FEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQ----D-----------Q----VGPKMEEYLSTHPSHENRA  430 (475)
Q Consensus       370 ~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~----~-----------~----~g~~~~~~lsTHP~~~~RI  430 (475)
                      +||.+|++||++|+++.    .||.++++++.|+....+.    +           .    .+.....|++|||++++||
T Consensus       208 ~SR~rE~~AD~~Aa~lt----g~p~~LasAL~KL~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~l~sTHP~~~eRI  283 (296)
T PRK02391        208 LSRYREFAADRGAAIIT----GRPSALASALMKISGRMDRVPTEDLREAEGMNAFFIIPALSGGSLGRLFSTHPPLEKRI  283 (296)
T ss_pred             HHHHHHHHHhHHHHHHh----CCHHHHHHHHHHHHcccccCCchhhcccHHHhhhcccCCCCcchHHHHhcCCcCHHHHH
Confidence            99999999999988765    4899999999999864210    0           0    0112257899999999999


Q ss_pred             HHHHHHHHH
Q psy768          431 NNLESKMKE  439 (475)
Q Consensus       431 ~~L~~~i~~  439 (475)
                      ++|++..++
T Consensus       284 ~~L~~~~~~  292 (296)
T PRK02391        284 AQLEKLERE  292 (296)
T ss_pred             HHHHHHHHh
Confidence            999976543

>PRK05457 heat shock protein HtpX; Provisional

Probab=99.91  E-value=2.8e-23  Score=208.05  Aligned_cols=185  Identities=22%  Similarity=0.230  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCCC----eEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccH
Q psy768          228 RVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPDG----RIFMFTGMFQLCQTDDELATVLSHELSHTLLKHV  303 (475)
Q Consensus       228 ~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpgG----~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~  303 (475)
                      ++.+.+++++...+ .|     .-++++++++.+|||++|.+    .|+|++||++.+ |+||+++|+|||+||+.++|.
T Consensus        78 ~L~~~v~~la~~~g-~p-----~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~  150 (284)
T PRK05457         78 WLVETVARQARQAG-IG-----MPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDM  150 (284)
T ss_pred             HHHHHHHHHHHhCC-CC-----CCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCH
Confidence            57777777766532 22     34789999999999999843    489999999999 679999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhcc-c-hHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHH
Q psy768          304 AEKLSNKTFLEILYIVPLMI----IWFLLP-D-LGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETE  377 (475)
Q Consensus       304 ~~~~~~~~l~~~l~~~~~~~----i~~~~~-~-~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~E  377 (475)
                      ........+...+...+...    ...... + ....++..+...+..++  +++         ...++.+.+||.+|++
T Consensus       151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~---------~~~ll~~~~SR~rEy~  219 (284)
T PRK05457        151 VTMTLIQGVVNTFVIFLSRIIAQIVDRFVSGNEEGNGIGYFIVSIVLEIV--FGI---------LASIIVMWFSRHREFR  219 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccHHHHHHHHHHHHH--HHH---------HHHHHHHHHHhHHHHH
Confidence            86533222221111111100    000000 0 00001100000000000  000         1113567899999999


Q ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHhhcccccc---------CC-CcccccCCCCChHHHHHHHHH
Q psy768          378 ADEVGLKLMARACYDVRVAPLFWQKMALKETQDQV---------GP-KMEEYLSTHPSHENRANNLES  435 (475)
Q Consensus       378 AD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~~---------g~-~~~~~lsTHP~~~~RI~~L~~  435 (475)
                      ||++|.++.   |  |++++++++|+.+.......         +. ....|++|||++++||++|++
T Consensus       220 AD~~Aa~lt---g--p~~L~~AL~KL~~~~~~~~~~~~~~~~i~~~~~~~~lfsTHP~~~eRI~~L~~  282 (284)
T PRK05457        220 ADAGGAKLA---G--REKMIAALQRLKTSYEPQLPGSMAAFGINGKSGLSELFMSHPPLEKRIAALRS  282 (284)
T ss_pred             HHHHHHHhh---C--HHHHHHHHHHHHhhCccCCChHHHHhhccCchhHHHHHcCCcCHHHHHHHHHh
Confidence            999999885   3  89999999999876521000         10 135789999999999999976

>PRK01265 heat shock protein HtpX; Provisional

Probab=99.90  E-value=5.8e-23  Score=208.27  Aligned_cols=196  Identities=20%  Similarity=0.223  Sum_probs=121.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeC----CCeEEEehhhhhhcCCHHHHHHHHH
Q psy768          217 QVLPLGHPAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFP----DGRIFMFTGMFQLCQTDDELATVLS  292 (475)
Q Consensus       217 ~~lp~~dp~~~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalp----gG~IvV~~GLL~~l~~edELaaVLA  292 (475)
                      ++.|.+ |...++.+++++++.... .|     ..+++++|++.+|||+++    +++|+|++||++.+ |+|||.+|||
T Consensus        74 ~~~p~~-~~~~~L~~~v~~la~~~g-~~-----~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlA  145 (324)
T PRK01265         74 EVTPTD-PVYGWLYSIVAEVAKYNG-IR-----VPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKIL-NRDEIKAVAG  145 (324)
T ss_pred             eCCCCC-cccHHHHHHHHHHHHHcC-CC-----CCeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhC-CHHHHHHHHH
Confidence            444443 222345666666665431 22     348999999999999975    45799999999999 6799999999


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhh
Q psy768          293 HELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLL-------PDLGAIVTQVLLDDLKSIIFELPFEREMETEADESII  365 (475)
Q Consensus       293 HElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~~~-------~~~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~  365 (475)
                      ||+||++++|....+....+..++..+.....|...       .+.... +..+...+.     .++     ..+  ..+
T Consensus       146 HElgHik~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~ll~-----~~~-----~~i--~~~  212 (324)
T PRK01265        146 HELGHLKHRDVELLMAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGG-LLFLIGIAL-----MAV-----SFV--FNL  212 (324)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccch-HHHHHHHHH-----HHH-----HHH--HHH
Confidence            999999999998765443332222221111122110       000000 000000000     000     001  112


Q ss_pred             hccccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccc--------c---------------ccC---------
Q psy768          366 FELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQ--------D---------------QVG---------  413 (475)
Q Consensus       366 ~~~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~--------~---------------~~g---------  413 (475)
                      +.+.+||.+|++||++|.+.+   +-+|.++.++++|+......        .               ..+         
T Consensus       213 l~~aiSR~rEy~AD~~aa~~~---tg~p~~LasAL~KL~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~  289 (324)
T PRK01265        213 LVLSINRMREAYADVNSALTV---PGGAENLQTALAKITLSMDPGALERFKKKSTTNQMASMLFFSNAIEEVPTWDAREL  289 (324)
T ss_pred             HHHHHHHHHHHHHhHHHHHhh---cCChHHHHHHHHHHHhcccccccccccccccCChhhhhheeeCcccccccchhhhh
Confidence            667899999999999987643   23789999999999853210        0               001         


Q ss_pred             ---------CCcccccCCCCChHHHHHHHHHH
Q psy768          414 ---------PKMEEYLSTHPSHENRANNLESK  436 (475)
Q Consensus       414 ---------~~~~~~lsTHP~~~~RI~~L~~~  436 (475)
                               +...++|||||++++||++|++.
T Consensus       290 ~~~~~~~~~~~~~~lFsTHPp~e~Ri~rL~~~  321 (324)
T PRK01265        290 VEYWKTTKVPWYADIFSDHPHPAKRIQLLEKL  321 (324)
T ss_pred             hhhhcccchhHHHHHhCCCcChHHHHHHHHHh
Confidence                     01246799999999999999985

>KOG2719|consensus

Probab=99.72  E-value=8.4e-17  Score=165.88  Aligned_cols=198  Identities=17%  Similarity=0.244  Sum_probs=127.4

Q ss_pred             cCCCCCCCCHHH-HHHHHHHHHHHHhccccccCCCcce-eEEEEec----CCcceeEeCCC---eEEEehhhhh--hcCC
Q psy768          215 GNQVLPLGHPAY-KRVGAVVKRLIDANKVYMEHNNFKY-PITIIDD----PLINAFVFPDG---RIFMFTGMFQ--LCQT  283 (475)
Q Consensus       215 ~~~~lp~~dp~~-~~v~~i~~rL~~~~~~~p~~~~~~~-~v~Vv~~----~~~NAFalpgG---~IvV~~GLL~--~l~~  283 (475)
                      -++..|..+... +.++++++++.           .|- +++|++.    ...|||.+|-+   +|+++|.|+.  ...|
T Consensus       208 f~K~~PLe~g~l~~~Ie~la~s~g-----------fp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~  276 (428)
T KOG2719|consen  208 FGKFTPLEEGDLKEKIERLADSVG-----------FPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHLN  276 (428)
T ss_pred             hcCCCCCCCCchHHHHHHHHHhcC-----------CCceEEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhccc
Confidence            456667666544 46777766653           222 4667772    27999999855   6999999993  3336


Q ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH------hcc--c-hHHHHHHHHHHHHHHHHhhcchhh
Q psy768          284 DDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWF------LLP--D-LGAIVTQVLLDDLKSIIFELPFER  354 (475)
Q Consensus       284 edELaaVLAHElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~------~~~--~-~~~~l~~~~~~~l~~~l~~lp~~~  354 (475)
                      +||+++|+|||+||+.++|..++....++..++.+.+.++++.      .++  + ....+|-++   +..+. ..|...
T Consensus       277 ~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~~~~~~~~ly~a~Gf~~~~P~~ig~li---vf~~~-l~py~~  352 (428)
T KOG2719|consen  277 NEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFGFLYRNPKLYAAFGFIDEQPSLIGFLI---VFQFV-LAPYRA  352 (428)
T ss_pred             cHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcCcchheeecCCCCCcchhHHHH---HHHHH-HHhHHH
Confidence            6899999999999999999999988877766665554444432      111  1 001122110   00110 011111


Q ss_pred             hhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccccccCCCc-ccccCCCCChHHHHHHH
Q psy768          355 EMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKM-EEYLSTHPSHENRANNL  433 (475)
Q Consensus       355 ~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~~g~~~-~~~lsTHP~~~~RI~~L  433 (475)
                      .       .....+-+||..|++||++|    .+-||.- .+..++-||...+-.-...++. ..|-+|||+.-+|++++
T Consensus       353 l-------~~~~~n~~sR~fEyqAD~fA----~klGYg~-~L~~AL~KL~~dnlsf~~~D~LYs~~~~~HPtvleRl~~l  420 (428)
T KOG2719|consen  353 L-------LNFLMNLISRRFEYQADAFA----KKLGYGK-DLRQALIKLFVDNLSFPVSDPLYSAWHHLHPTVLERLDAL  420 (428)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHH----HHcCCch-hHHHHHHHHhhhhcCCCCCcHHHHHHHhcCchHHHHHHHH
Confidence            1       11267889999999999994    6668864 5677777887655111112222 56789999999999999


Q ss_pred             HHHHHH
Q psy768          434 ESKMKE  439 (475)
Q Consensus       434 ~~~i~~  439 (475)
                      +....+
T Consensus       421 ~~~~~k  426 (428)
T KOG2719|consen  421 DYLSEK  426 (428)
T ss_pred             HHHHhh
Confidence            987654

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.20  E-value=3.1e-05  Score=78.35  Aligned_cols=136  Identities=21%  Similarity=0.284  Sum_probs=83.3

Q ss_pred             EEEEecC-CcceeEeCC--CeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy768          253 ITIIDDP-LINAFVFPD--GRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLP  329 (475)
Q Consensus       253 v~Vv~~~-~~NAFalpg--G~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~~~~  329 (475)
                      +.++.++ ....|++|-  -+|++..++.+.+ |++|+..||.||++|+.++|....+-...        +..+.|. .|
T Consensus       160 ~~i~~s~~i~sP~~~G~~~p~I~lP~~~~~~~-~~~el~~il~HEl~Hikr~D~~~~~l~~l--------~~~l~Wf-nP  229 (299)
T PF05569_consen  160 IRIRVSSGISSPFVFGFLRPVIVLPESLLEDL-SEEELRAILLHELAHIKRRDLLWKLLAEL--------LCALHWF-NP  229 (299)
T ss_pred             eEEEEcCCCCCCeeecCcceEEEecCcccccc-CHHHHHHHHHHHHHHHHCCChHHHHHHHH--------HHHHHHh-hH
Confidence            3344333 456777753  3799999999888 57999999999999999999986542221        1122221 11


Q ss_pred             chHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccc
Q psy768          330 DLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQ  409 (475)
Q Consensus       330 ~~~~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~  409 (475)
                                   +.-+                   +...+.+.+|+.||+..++.+.  +-+.......+-++......
T Consensus       230 -------------~~~~-------------------~~~~~~~~~E~~cD~~vl~~l~--~~~~~~Y~~~Ll~~~~~~~~  275 (299)
T PF05569_consen  230 -------------LVWL-------------------LRRRIRRDRELACDEAVLRNLG--KEERKAYAETLLKVAKRSQQ  275 (299)
T ss_pred             -------------HHHH-------------------HHHHHHHHHHHhhhHHHHHhcC--chhHHHHHHHHHHHHHhhcC
Confidence                         1111                   4567889999999999877642  23455666666566544411


Q ss_pred             cccCCCc-ccccCCCCChHHHHHHH
Q psy768          410 DQVGPKM-EEYLSTHPSHENRANNL  433 (475)
Q Consensus       410 ~~~g~~~-~~~lsTHP~~~~RI~~L  433 (475)
                       ...... ..+..+.-..++||..|
T Consensus       276 -~~~~~~~~~~~~~~~~lk~RI~~I  299 (299)
T PF05569_consen  276 -FKRPPLASSFAFSKSQLKRRIKMI  299 (299)
T ss_pred             -CCcchhhhhccCChHHHHHHHHhC
Confidence             001111 12234666778887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.67  E-value=9.8e-05  Score=70.79  Aligned_cols=60  Identities=18%  Similarity=0.119  Sum_probs=34.0

Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCC-----chhHHHHHHHHH--hhccccccCCCcccccCCCCChHHHHHHH
Q psy768          369 PFEREMETEADEVGLKLMARACYD-----VRVAPLFWQKMA--LKETQDQVGPKMEEYLSTHPSHENRANNL  433 (475)
Q Consensus       369 ~~SR~~E~EAD~~gl~ll~~AGyd-----p~a~~~~l~kl~--~~~~~~~~g~~~~~~lsTHP~~~~RI~~L  433 (475)
                      ..+++.|.+||.+|..++-....+     -+.+.-....+.  ...     -......-.|||+..+||.++
T Consensus       123 ~~~~~eE~~AD~~A~~~il~~~~~~~~~~~r~~gIa~al~~i~~l~-----~~~~~~~~~tHP~~~~Ri~~~  189 (206)
T PF10463_consen  123 SQSIQEEKEADSYATEMILSDVGNYAEERKRNLGIAIALFFISLLF-----PENSLNGTTTHPDIDDRIFNI  189 (206)
T ss_pred             chhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----cccccCCCCCCcCHHHHHHHH
Confidence            456778999999999998766555     111111111111  111     011122235999999999665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.

>PRK09672 phage exclusion protein Lit; Provisional

Probab=97.67  E-value=0.00013  Score=72.91  Aligned_cols=60  Identities=15%  Similarity=-0.004  Sum_probs=38.0

Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCC--chh-----HHHHHHHHHhhccccccCCCcccccCCCCChHHHHHHH
Q psy768          369 PFEREMETEADEVGLKLMARACYD--VRV-----APLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNL  433 (475)
Q Consensus       369 ~~SR~~E~EAD~~gl~ll~~AGyd--p~a-----~~~~l~kl~~~~~~~~~g~~~~~~lsTHP~~~~RI~~L  433 (475)
                      ..|++.|.+||.+|..++-...++  +..     ..-++--+....     ........+|||+..+||.+.
T Consensus       187 e~s~~eE~eaDs~At~~il~~~~~~a~s~Kr~vgIaia~l~l~~l~-----~~~~~~g~~tHP~~~~RI~a~  253 (305)
T PRK09672        187 EDSIQEEKEADSYATNWLLSKSEKYAPSKKRSVGIAIALLFLQELE-----LENKSCGKGTHPDADQRIFAN  253 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccccHHHhhhHHHHHHHHHHHHHh-----ccccCCCCCCCCCHHHHHHHh
Confidence            456788999999999999987777  322     111111222222     111122246999999999987

>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases

Probab=97.20  E-value=0.0015  Score=66.14  Aligned_cols=131  Identities=21%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             CcceeEeC-CCeEEEehhhhhhcC------CHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q psy768          260 LINAFVFP-DGRIFMFTGMFQLCQ------TDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLG  332 (475)
Q Consensus       260 ~~NAFalp-gG~IvV~~GLL~~l~------~edELaaVLAHElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~  332 (475)
                      ..|||=.| +.+||+....++.+.      .+-..+.|||||.||.+.+..-          ++.-              
T Consensus       136 ~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEyGHHVQ~l~G----------il~~--------------  191 (292)
T PF04228_consen  136 ATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEYGHHVQNLLG----------ILDA--------------  191 (292)
T ss_pred             CCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHhh----------hHHH--------------
Confidence            35667666 568999988766552      2345678999999998654221          0000              


Q ss_pred             HHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcC----CCchhHHHHHHHHHhhcc
Q psy768          333 AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARAC----YDVRVAPLFWQKMALKET  408 (475)
Q Consensus       333 ~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AG----ydp~a~~~~l~kl~~~~~  408 (475)
                        +.... .....                   --.+..||..|.+||.||=-++..+-    +++....+.+.......+
T Consensus       192 --~~~~~-~~~~~-------------------~~~~~~svr~ELQADC~AGvw~~~~~~~~~l~~~di~~al~aa~aiGD  249 (292)
T PF04228_consen  192 --VRQAQ-QGRSP-------------------AEANELSVRLELQADCFAGVWAGHAAEDGSLTPGDIEEALNAASAIGD  249 (292)
T ss_pred             --HHHHh-hccCc-------------------cccchHHHHHHHHHHHHHHHHhhhccccCCcCHHHHHHHHHHHHHhcC
Confidence              00000 00000                   02356799999999999988876553    233333333333222211


Q ss_pred             ---ccc-cCCCcccccCCCCChHHHHHHHHHHH
Q psy768          409 ---QDQ-VGPKMEEYLSTHPSHENRANNLESKM  437 (475)
Q Consensus       409 ---~~~-~g~~~~~~lsTHP~~~~RI~~L~~~i  437 (475)
                         ++. .+...|+ -.||=+.++|+.-.++=.
T Consensus       250 D~iq~~~~g~v~pd-s~tHGSs~qR~~Wf~~G~  281 (292)
T PF04228_consen  250 DRIQKRAGGRVVPD-SFTHGSSEQRVRWFQRGY  281 (292)
T ss_pred             hHhhhhcCCCCCCC-CcCcCCHHHHHHHHHHHh
Confidence               011 1111122 139999999987665543

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=97.06  E-value=0.0031  Score=53.65  Aligned_cols=50  Identities=28%  Similarity=0.439  Sum_probs=31.2

Q ss_pred             eeEEEEecC--CcceeEeC---CCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHH
Q psy768          251 YPITIIDDP--LINAFVFP---DGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAE  305 (475)
Q Consensus       251 ~~v~Vv~~~--~~NAFalp---gG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~  305 (475)
                      .+|...+..  ....+..+   .+.|+|+..+     ++.+-.+++|||+||+..+|...
T Consensus         6 i~v~~~~~~~~~~~~~~~~~~~~~~I~in~~~-----~~~~~~f~laHELgH~~~~~~~~   60 (122)
T PF06114_consen    6 IDVVYTDLGPKDLGGFSIPKENNPIIFINSNL-----SPERQRFTLAHELGHILLHHGDE   60 (122)
T ss_dssp             -EEEEE--TT--EEEETT----TTEEEEESSS------HHHHHHHHHHHHHHHHHHH-HH
T ss_pred             EEEEEEcCCCCCcCEEEEecCcCCEEEECCCC-----CHHHHHHHHHHHHHHHHhhhccc
Confidence            344444443  33334333   5578888873     57888999999999999888764

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]

Probab=96.85  E-value=0.038  Score=56.14  Aligned_cols=53  Identities=25%  Similarity=0.281  Sum_probs=40.3

Q ss_pred             EEEEecC-CcceeEeC--CCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHHH
Q psy768          253 ITIIDDP-LINAFVFP--DGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEK  306 (475)
Q Consensus       253 v~Vv~~~-~~NAFalp--gG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~~  306 (475)
                      +.+..+. ..|-.+++  --.|++-+.+.+.++ ++|+..|++||++|++++|....
T Consensus       154 i~ir~s~~i~~P~v~gl~kp~IvlP~d~~~r~~-~ee~~yIilHEl~Hlk~gD~i~n  209 (337)
T COG4219         154 ILIRKSKAIDGPMVFGLVKPCIVLPADFVERLT-DEELKYIILHELSHLKRGDAIIN  209 (337)
T ss_pred             eeEeecccCCCceeeccCcceEEccHHHHhhcC-HHhhhhhHhHHHhhhhcccHHHH
Confidence            4555543 33444433  446999999999995 68999999999999999998764

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=96.13  E-value=0.009  Score=60.27  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=47.7

Q ss_pred             eEEEEecCCcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHHHHH
Q psy768          252 PITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLS  308 (475)
Q Consensus       252 ~v~Vv~~~~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~~~~  308 (475)
                      .+.++.++.+..+++.|.+|+++-..+..+ +.+|+.+||+||+-|++.+|....-.
T Consensus        26 ~l~~~~~~~~~t~~tDg~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~   81 (292)
T PF13203_consen   26 SLPPVEDDGIPTAATDGRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG   81 (292)
T ss_pred             hCeeeeCCCCceeeEcCcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence            344455777888999999999999999888 57899999999999999999987655

>COG2321 Predicted metalloprotease [General function prediction only]

Probab=94.27  E-value=0.24  Score=49.28  Aligned_cols=39  Identities=26%  Similarity=0.479  Sum_probs=29.5

Q ss_pred             eeEeC-CCeEEEehhhhhhcC------CHHHHHHHHHHHHHhhhcc
Q psy768          263 AFVFP-DGRIFMFTGMFQLCQ------TDDELATVLSHELSHTLLK  301 (475)
Q Consensus       263 AFalp-gG~IvV~~GLL~~l~------~edELaaVLAHElgHv~~r  301 (475)
                      -|-.| +.++|+.....+.|+      .+=.-+.|+|||.||++.+
T Consensus       136 PFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHVQn  181 (295)
T COG2321         136 PFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHVQN  181 (295)
T ss_pred             CeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHHHH
Confidence            45556 468999999988874      3345689999999998653

>PRK04351 hypothetical protein; Provisional

Probab=93.85  E-value=0.22  Score=45.60  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhh
Q psy768          260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHT  298 (475)
Q Consensus       260 ~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv  298 (475)
                      ..-++-+....|-++.-+++.. +++.|..||+|||+|+
T Consensus        35 tgG~~~l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~   72 (149)
T PRK04351         35 TGGRYLLKDHHIEFNPKMLEEY-GLEELIGIIKHELCHY   72 (149)
T ss_pred             hhheeecCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHH
Confidence            3445556678899999998875 5799999999999997

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=92.33  E-value=0.34  Score=44.02  Aligned_cols=41  Identities=17%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             ceeEeCCC---eEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccH
Q psy768          262 NAFVFPDG---RIFMFTGMFQLCQTDDELATVLSHELSHTLLKHV  303 (475)
Q Consensus       262 NAFalpgG---~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~  303 (475)
                      -.+...++   .|.++..+++. .+++++..+|.|||+|+...+.
T Consensus        33 G~~~~~~~~~~~I~ls~~~~~~-~~~~~~~~tL~HEm~H~~~~~~   76 (157)
T PF10263_consen   33 GRCRYKRRSPCEIRLSPKLLDR-NPEEELIDTLLHEMAHAAAYVF   76 (157)
T ss_pred             EEEEECCCCceEEEECHHHHHh-hHHHHHHHHHHHHHHHHHhhhc
Confidence            33445555   69999999988 4688999999999999976433

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=92.12  E-value=5.1  Score=39.10  Aligned_cols=50  Identities=22%  Similarity=0.183  Sum_probs=33.8

Q ss_pred             cceeEEEEecCCcceeEeCCC-eEEEehhhhhhcC----C------------HHHHHHHHHHHHHhh
Q psy768          249 FKYPITIIDDPLINAFVFPDG-RIFMFTGMFQLCQ----T------------DDELATVLSHELSHT  298 (475)
Q Consensus       249 ~~~~v~Vv~~~~~NAFalpgG-~IvV~~GLL~~l~----~------------edELaaVLAHElgHv  298 (475)
                      .+..|.+-...+.|||=-|.. .|.|--.+++...    +            .+-+.+++-||+||.
T Consensus        37 ~~l~i~~~~CGe~nA~ydPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHA  103 (220)
T PF14247_consen   37 RDLTIRFAECGEDNAFYDPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHA  103 (220)
T ss_pred             CCeEEEEeecCCCCCccCCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            345555555779999999954 6888777765531    0            234667788888876

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=92.12  E-value=0.12  Score=42.16  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=28.0

Q ss_pred             CcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcc
Q psy768          260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLK  301 (475)
Q Consensus       260 ~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~r  301 (475)
                      ...||+. |+.|++..|-.+.-..  +=..+||||++|+...
T Consensus        37 ~A~A~T~-G~~I~f~~g~~~~~s~--~~~~llaHEl~Hv~Qq   75 (79)
T PF13699_consen   37 GARAFTV-GNDIYFAPGKYNPDSP--EGRALLAHELAHVVQQ   75 (79)
T ss_pred             CCeEEEE-CCEEEEcCCCcCCCCC--CcchhHhHHHHHHHhh
Confidence            5677776 7789997776544322  3467999999999753

>smart00731 SprT SprT homologues

Probab=89.67  E-value=0.37  Score=43.73  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=28.4

Q ss_pred             CCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcc
Q psy768          268 DGRIFMFTGMFQLCQTDDELATVLSHELSHTLLK  301 (475)
Q Consensus       268 gG~IvV~~GLL~~l~~edELaaVLAHElgHv~~r  301 (475)
                      .+.|.++..|++.. .++.+..||.|||+|+...
T Consensus        41 ~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~~   73 (146)
T smart00731       41 SAEIRLNPKLLTEN-GRDRLRETLLHELCHAALY   73 (146)
T ss_pred             CCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHHH
Confidence            67899999998865 4689999999999999873

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases

Probab=88.77  E-value=3.6  Score=40.11  Aligned_cols=52  Identities=12%  Similarity=0.213  Sum_probs=29.6

Q ss_pred             ceeEEEEecCCcceeEeCCC-eEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHH
Q psy768          250 KYPITIIDDPLINAFVFPDG-RIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA  304 (475)
Q Consensus       250 ~~~v~Vv~~~~~NAFalpgG-~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~  304 (475)
                      +.+|..++..--+=|- |.. .|-++++-.+.- |- .-.+|-|||.||..+++..
T Consensus        54 ~V~Ve~~~G~LtDHYd-P~~k~vrLS~~vy~~~-Si-aAvaVAAHEvGHAiQ~a~~  106 (222)
T PF04298_consen   54 DVRVERVPGELTDHYD-PRNKVVRLSEDVYNGR-SI-AAVAVAAHEVGHAIQHAEG  106 (222)
T ss_pred             CeeEEEeCCCCCCCcC-CCCCEEEeCCccCCCC-CH-HHHHHHHHHHhHHHhcccc
Confidence            3455555432122222 433 455666655442 32 4467999999999987753

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=87.36  E-value=3  Score=39.41  Aligned_cols=51  Identities=20%  Similarity=0.117  Sum_probs=35.9

Q ss_pred             eEEEEecCCcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHH
Q psy768          252 PITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA  304 (475)
Q Consensus       252 ~v~Vv~~~~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~  304 (475)
                      +|.|.+...-=.-+...|.|.++.-|+..  .++-+..|+.||++|..+.++.
T Consensus       131 ~i~ir~~ksrWGsc~~~~~I~ln~~L~~~--P~~~idYVvvHEL~Hl~~~nHs  181 (205)
T PF01863_consen  131 KIKIRDMKSRWGSCSSKGNITLNWRLVMA--PPEVIDYVVVHELCHLRHPNHS  181 (205)
T ss_pred             eEEEeehhhccccCCCCCcEEeecccccC--CccHHHHHHHHHHHHhccCCCC
Confidence            45555544333334457899999988764  4578999999999999665443

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=87.04  E-value=2.2  Score=41.64  Aligned_cols=44  Identities=18%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             CcceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHH
Q psy768          260 LINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAE  305 (475)
Q Consensus       260 ~~NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~  305 (475)
                      ..=+-+...|.|.++.-|+..  .++.+..|++||++|....++..
T Consensus       150 ~~WGScs~~~~i~~~~~l~~~--p~~~i~YVvvHELaHLke~nHs~  193 (223)
T COG1451         150 RRWGSCSKAGEIRFNWRLVMA--PEEVIDYVVVHELAHLKEKNHSK  193 (223)
T ss_pred             ceeeeecCCCcEEeehhhhcC--CHHHHHHHHHHHHHHHhhhhccH
Confidence            333444566767776655443  57899999999999998877544

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57

Probab=86.23  E-value=0.61  Score=45.05  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=24.3

Q ss_pred             CCeEEEehhhhhhcCCHHHHHHHHHHHHHhhh-cccHH
Q psy768          268 DGRIFMFTGMFQLCQTDDELATVLSHELSHTL-LKHVA  304 (475)
Q Consensus       268 gG~IvV~~GLL~~l~~edELaaVLAHElgHv~-~rH~~  304 (475)
                      ++.|.| .++ ... +-+.++.||+|||||.+ .||.-
T Consensus       117 ~~~I~I-~~~-~~~-~~~~~~hvi~HEiGH~IGfRHTD  151 (211)
T PF12388_consen  117 YKFIQI-YGL-SNY-SVNVIEHVITHEIGHCIGFRHTD  151 (211)
T ss_pred             CceEEE-Eec-CCC-chhHHHHHHHHHhhhhccccccC
Confidence            345888 354 332 45789999999999987 57865

The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=86.02  E-value=1.9  Score=41.06  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=25.0

Q ss_pred             CeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccH
Q psy768          269 GRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHV  303 (475)
Q Consensus       269 G~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~  303 (475)
                      |+|+++-  +..-.+.++|.+++|||+-|+..-..
T Consensus        49 ~~i~l~~--~~~~~~~~~l~~~iaHE~hH~~r~~~   81 (195)
T PF10026_consen   49 GYIFLFL--LPNDYSLEELPALIAHEYHHNCRYEQ   81 (195)
T ss_pred             CEEEEEe--cCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            4677775  44445678999999999999976443

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=85.16  E-value=4.7  Score=38.87  Aligned_cols=49  Identities=24%  Similarity=0.201  Sum_probs=35.1

Q ss_pred             EEecCCcceeEeC---CCeEEEehhhhhhcCC----HHHHHHHHHHHHHhhhcccH
Q psy768          255 IIDDPLINAFVFP---DGRIFMFTGMFQLCQT----DDELATVLSHELSHTLLKHV  303 (475)
Q Consensus       255 Vv~~~~~NAFalp---gG~IvV~~GLL~~l~~----edELaaVLAHElgHv~~rH~  303 (475)
                      ++++..-=|++.+   ...|.++...|....+    .+|+.+||-|||.|+.+...
T Consensus        57 ~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~  112 (205)
T PF04450_consen   57 ILDDMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDG  112 (205)
T ss_pred             EEECCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence            3444333344433   1469999999998853    35999999999999977654

>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]

Probab=82.03  E-value=1.4  Score=42.75  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             CeEEEehhhhhhcCCHHHHHHHHHHHHHhhhccc
Q psy768          269 GRIFMFTGMFQLCQTDDELATVLSHELSHTLLKH  302 (475)
Q Consensus       269 G~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH  302 (475)
                      +.|+++.-.     +++.=.++||||+||++++-
T Consensus        59 ~~I~iN~n~-----~~~r~rFtlAHELGH~llH~   87 (213)
T COG2856          59 PVIYINANN-----SLERKRFTLAHELGHALLHT   87 (213)
T ss_pred             ceEEEeCCC-----CHHHHHHHHHHHHhHHHhcc
Confidence            367776644     56788999999999998753

>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.03  E-value=2.7  Score=37.40  Aligned_cols=47  Identities=26%  Similarity=0.108  Sum_probs=23.8

Q ss_pred             cceeEEEEecC-CcceeEeCCC--eEEEehhhhhhcCCHHHHHHHHHHHHHhhh
Q psy768          249 FKYPITIIDDP-LINAFVFPDG--RIFMFTGMFQLCQTDDELATVLSHELSHTL  299 (475)
Q Consensus       249 ~~~~v~Vv~~~-~~NAFalpgG--~IvV~~GLL~~l~~edELaaVLAHElgHv~  299 (475)
                      -++.++..+++ ..=|...+.|  +|++-..--+..   +.+. |.+||+||+.
T Consensus        40 a~~~~~~~~~~~~sya~~~g~G~G~I~l~~~~~qgy---~~~R-IaaHE~GHiL   89 (132)
T PF02031_consen   40 ADIRYYEGNDPRGSYASTDGLGSGYIFLDYQQNQGY---NSTR-IAAHELGHIL   89 (132)
T ss_dssp             -SEEEEEE--TT--EEEE-SSS-EEEEEEHHHHHHS----HHH-HHHHHHHHHH
T ss_pred             CcEEEEEecCCCCcccccCCCCcEEEEechHHhhCC---ccce-eeeehhcccc
Confidence            34555544333 3445555544  577765432222   2344 9999999984

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.

>COG2738 Predicted Zn-dependent protease [General function prediction only]

Probab=80.62  E-value=5.1  Score=38.24  Aligned_cols=20  Identities=20%  Similarity=0.307  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhhhcccHHH
Q psy768          286 ELATVLSHELSHTLLKHVAE  305 (475)
Q Consensus       286 ELaaVLAHElgHv~~rH~~~  305 (475)
                      .=.+|-|||.||....+...
T Consensus        91 a~~aVAAHEVGHAiQd~~~Y  110 (226)
T COG2738          91 AAIAVAAHEVGHAIQDQEDY  110 (226)
T ss_pred             HHHHHHHHHhhHHHhhhccc
Confidence            34679999999999877653

>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=80.10  E-value=0.43  Score=51.91  Aligned_cols=46  Identities=22%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CCcceeEeCCCeEEEe-hhhhhhc---------CCHHHHHHHHHHHHHhhhcccHH
Q psy768          259 PLINAFVFPDGRIFMF-TGMFQLC---------QTDDELATVLSHELSHTLLKHVA  304 (475)
Q Consensus       259 ~~~NAFalpgG~IvV~-~GLL~~l---------~~edELaaVLAHElgHv~~rH~~  304 (475)
                      -.+|||--|+...+|+ -++|..-         .|--.+-+||||||||.--....
T Consensus       449 q~VNAYYnp~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGa  504 (654)
T COG3590         449 QTVNAYYNPQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGA  504 (654)
T ss_pred             HHhhhhcCCCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCcc
Confidence            3799999998764444 5555421         13346889999999998766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	475
3c37_A	253	X-ray Structure Of The Putative Zn-dependent Peptid		1e-12

>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase Q74d82 At The Resolution 1.7 A. Northeast Structural Genomics Consortium Target Gsr143a Length = 253

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 208 DNFIEEHGNQVLPLGHPAYKR-VGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVF 266
           + F  E   Q  P+  P  +R V  V KRL+   +       F Y   ++ D  +NAF  
Sbjct: 24  NKFAVEIEKQQQPVNDPEVQRYVDKVGKRLLSGARAV----EFDYVFKVVKDDSVNAFAI 79
Query: 267 PDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWF 326
           P GR+++ TG+ +    + ELA VL+HE++H + +H   + +     E  Y + L ++  
Sbjct: 80  PGGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQXTQ----EYGYSLVLSLVLG 135
Query: 327 LLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLM 386
             P+         L  L   +F                     + RE E +AD +G++  
Sbjct: 136 DNPN--------XLAQLAGQLF--------------GKAGXXSYSREYENQADFLGVETX 173
Query: 387 ARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLSTHPSHENRANNLESKM 437
            +A Y+      F+QK+   +   Q    +  + STHP    R   +++++
Sbjct: 174 YKAGYNPNGLTSFFQKLNAXDGGTQ--SNVARFFSTHPLTSERIQRVQAEI 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	475
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	7e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253

 Score =  164 bits (417), Expect = 7e-48
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 37/262 (14%)

Query: 184 PITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPA-YKRVGAVVKRLIDANKV 242
            +T  + F ++   Q  ++         ++      P+  P   + V  V KRL+     
Sbjct: 4   SMTDIKGFNMISIEQEKELGNKFAVEIEKQQQ----PVNDPEVQRYVDKVGKRLLSG--- 56

Query: 243 YMEHNNFKYPITIIDDPLINAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKH 302
                 F Y   ++ D  +NAF  P GR+++ TG+ +    + ELA VL+HE++H + +H
Sbjct: 57  -ARAVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVARH 115

Query: 303 VAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLDDLKSIIFELPFEREMETEADE 362
              +++ +    ++    L ++    P++ A +   L                       
Sbjct: 116 GTRQMTQEYGYSLV----LSLVLGDNPNMLAQLAGQLF---------------------- 149

Query: 363 SIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGPKMEEYLST 422
                + + RE E +AD +G++ M +A Y+      F+QK+   +   Q       + ST
Sbjct: 150 GKAGMMSYSREYENQADFLGVETMYKAGYNPNGLTSFFQKLNAMDGGTQSNV--ARFFST 207

Query: 423 HPSHENRANNLESKMKEALDIR 444
           HP    R   +++++ +    R
Sbjct: 208 HPLTSERIQRVQAEIAKLPPQR 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 71/532 (13%), Positives = 145/532 (27%), Gaps = 167/532 (31%)

Query: 10  DNLDDLLRYIGHTSPECLETLDTPRNIPASR------SSINTELEQDTIGCILSCDKKYS 63
              D  +        +C +  D P++I +         S +       +   L   K+  
Sbjct: 24  VFEDAFVDNF-----DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSKQEE 77

Query: 64  TCLNFQITGHQDKH--LTRVLFHQSANHQL--QVFNIRVLRCFHTSQPKNALPGFIYLIF 119
               F     +  +  L   +  +     +  +++  +  R ++ +Q        +    
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVS-RL 134

Query: 120 KPILRVVGAIVIARISRKWWSKLSPDQKKIILSQIKKHQDKIAGIT-LTSIGLA------ 172
           +P L++          R+   +L P  K +++          +G T +            
Sbjct: 135 QPYLKL----------RQALLELRP-AKNVLI-----DGVLGSGKTWVALDVCLSYKVQC 178

Query: 173 ----YIYYFLHLETCPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAYKR 228
                I++ L+L+ C      + ++    +L    QI  +       +  + L      R
Sbjct: 179 KMDFKIFW-LNLKNC---NSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKL------R 226

Query: 229 VGAVVKRLIDANKVYMEHNNFKYPITIIDD----PLINAFVFPDGRIFMFTGMFQLCQT- 283
           + ++   L    +  ++   ++  + ++ +       NAF   +            C+  
Sbjct: 227 IHSIQAEL----RRLLKSKPYENCLLVLLNVQNAKAWNAF---NLS----------CKIL 269

Query: 284 ----DDELATVLS-HELSHTLLKHVAEKLSNKTFLEIL----------------YIVPLM 322
                 ++   LS    +H  L H +  L+      +L                   P  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 323 I--IWFLLPDLGAIVT---QVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETE 377
           +  I   + D  A       V  D L +II              ES +  L        E
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTII--------------ESSLNVL--------E 367

Query: 378 ADEVGLKLMARACY--------DVRVAP----LFWQKMALKETQDQV-----------GP 414
             E       R  +           +      L W  +   +    V            P
Sbjct: 368 PAEY------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 415 KMEE------YLSTHPSHENRANNLESKMKEALDIRKECNCLPLGPLFIPRL 460
           K         YL      EN    L   + +  +I K         L  P L
Sbjct: 422 KESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPK---TFDSDDLIPPYL 469

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	475
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	100.0
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	99.91
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	99.56
3dte_A	301	IRRE protein; radiotolerance, gene regulation, met	96.05

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=100.00  E-value=2.8e-39  Score=317.42  Aligned_cols=221  Identities=23%  Similarity=0.414  Sum_probs=160.3

Q ss_pred             cCCCCccceeccCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHH-HHHHHHHHHHHHhccccccCCCcceeEEEEecCCc
Q psy768          183 CPITGRQKFIIVKPNQLNDVTQIAYDNFIEEHGNQVLPLGHPAY-KRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLI  261 (475)
Q Consensus       183 ~P~tgr~~~~~ls~~~e~~lg~~~~~~~~~~~~~~~lp~~dp~~-~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~  261 (475)
                      +|.|||+++..+|+++|.++|++.++++.++    ..+.+||.+ ++|+++++++....+    ..+.+|+|+|++++.+
T Consensus         3 ~~~tgr~~~~~~s~~~e~~lg~~~~~~~~~~----~~~~~d~~l~~~l~~l~~~l~~~~~----~~~~~~~v~v~~~~~~   74 (253)
T 3c37_A            3 TSMTDIKGFNMISIEQEKELGNKFAVEIEKQ----QQPVNDPEVQRYVDKVGKRLLSGAR----AVEFDYVFKVVKDDSV   74 (253)
T ss_dssp             ------CCCCCCCHHHHHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHHHHHHHHTSS----CCCSCCEEEEECCCSC
T ss_pred             cCCCCchhhccCCHHHHHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHHHHhCC----CCCCCeEEEEEeCCCC
Confidence            4779999999999999999999888776543    457788876 599999999987653    2356899999999999


Q ss_pred             ceeEeCCCeEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy768          262 NAFVFPDGRIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIVPLMIIWFLLPDLGAIVTQVLLD  341 (475)
Q Consensus       262 NAFalpgG~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~l~~~~~~  341 (475)
                      ||||+|||+|+|++|||+.++|+|||++||||||||+.++|..+.+....  . ++.++ .++.  ..+..+ ++. +  
T Consensus        75 NAfa~~gg~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~H~~~~~~~~~--~-~~~l~-~~~~--g~~~~~-~~~-~--  144 (253)
T 3c37_A           75 NAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQMTQEY--G-YSLVL-SLVL--GDNPNM-LAQ-L--  144 (253)
T ss_dssp             CEEEETTTEEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTTHHHHHHHHHH--C-HHHHH-HHHH--TCCH---HHH-H--
T ss_pred             CeeEcCCCeEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCcCHHHHHHHHH--H-HHHHH-HHHh--CCCchh-HHH-H--
Confidence            99999999999999999999889999999999999999999998876554  1 11111 1111  111111 000 0  


Q ss_pred             HHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhccccccCC-Cccccc
Q psy768          342 DLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARACYDVRVAPLFWQKMALKETQDQVGP-KMEEYL  420 (475)
Q Consensus       342 ~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AGydp~a~~~~l~kl~~~~~~~~~g~-~~~~~l  420 (475)
                        ....              ...++.+.|||.+|+|||++|++++.++||||++++++|+||...+  . .+. ..++|+
T Consensus       145 --~~~~--------------~~~~~~~~~SR~~E~eAD~~a~~~~~~ag~~p~~l~~~l~kl~~~~--~-~~~~~~~~~~  205 (253)
T 3c37_A          145 --AGQL--------------FGKAGMMSYSREYENQADFLGVETMYKAGYNPNGLTSFFQKLNAMD--G-GTQSNVARFF  205 (253)
T ss_dssp             --HHHH--------------HSSSCCCCCCHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHTC----------------
T ss_pred             --HHHH--------------HHHHHhccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--h-cCCCcccHHh
Confidence              0000              1112578999999999999999999999999999999999998653  1 122 347899


Q ss_pred             CCCCChHHHHHHHHHHHHHH
Q psy768          421 STHPSHENRANNLESKMKEA  440 (475)
Q Consensus       421 sTHP~~~~RI~~L~~~i~~a  440 (475)
                      +|||++.+||++|++++++.
T Consensus       206 sTHP~~~~Ri~~l~~~~~~~  225 (253)
T 3c37_A          206 STHPLTSERIQRVQAEIAKL  225 (253)
T ss_dssp             -CCCCCHHHHHHHHHHHHTS
T ss_pred             cCCcChHHHHHHHHHHHHhc
Confidence            99999999999999988654

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=99.91  E-value=1.2e-23  Score=222.72  Aligned_cols=213  Identities=17%  Similarity=0.255  Sum_probs=132.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCHHH-HHHHHHHHHHHHhccccccCCCcceeEEEEe----cCCcceeEeCCC---eEEEehh
Q psy768          205 IAYDNFIEEHGNQVLPLGHPAY-KRVGAVVKRLIDANKVYMEHNNFKYPITIID----DPLINAFVFPDG---RIFMFTG  276 (475)
Q Consensus       205 ~~~~~~~~~~~~~~lp~~dp~~-~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~----~~~~NAFalpgG---~IvV~~G  276 (475)
                      .-|..++.-.-++..|..|+++ +.|+++++++.     .|     .-+++|++    ++..|||++|-+   +||++|+
T Consensus       213 ~iyP~~I~PLfnk~~Pl~dg~L~~~Ie~la~~~~-----fp-----~~~v~vv~gSkRs~~~NAy~~G~~~~krIVl~dt  282 (482)
T 4aw6_A          213 TIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSID-----FP-----LTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDT  282 (482)
T ss_dssp             HHHHHHTHHHHSCEEECCSSHHHHHHHHHHHHTT-----CC-----EEEEEEECGGGTBSCCCEEEEESSSCEEEEEEHH
T ss_pred             HHHHHHHHHHcCCCccCCcHHHHHHHHHHHHHcC-----CC-----CCcEEEEeCCCCCCCCceEEEcCCCCcEEEEEch
Confidence            3455554444467788888765 35666655541     12     24899999    678999998744   6999999


Q ss_pred             hhhh-------------------------------------cCCHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Q psy768          277 MFQL-------------------------------------CQTDDELATVLSHELSHTLLKHVAEKLSNKTFLEILYIV  319 (475)
Q Consensus       277 LL~~-------------------------------------l~~edELaaVLAHElgHv~~rH~~~~~~~~~l~~~l~~~  319 (475)
                      |++.                                     | |+||+++|||||+||+.++|..+.+....+..++.+.
T Consensus       283 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~El~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~  361 (482)
T 4aw6_A          283 LLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGC-KNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFF  361 (482)
T ss_dssp             HHC------------------------------------CCC-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccccccccccccccccccccccchhhcccchhhccCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            9987                                     4 6899999999999999999999887665543333222


Q ss_pred             HHHHHH------Hhcc--chH-HHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhccccchhhhHHHHHHHHHHHHHcC
Q psy768          320 PLMIIW------FLLP--DLG-AIVTQVLLDDLKSIIFELPFEREMETEADESIIFELPFEREMETEADEVGLKLMARAC  390 (475)
Q Consensus       320 ~~~~i~------~~~~--~~~-~~l~~~~~~~l~~~l~~lp~~~~l~~~~~~~~~~~~~~SR~~E~EAD~~gl~ll~~AG  390 (475)
                      +...+.      ...+  +.. ..++..+   +..++ ..|+.       ....++.+.|||++|+|||++|+++    |
T Consensus       362 l~~~l~~~~~l~~~~G~~~~~p~~~~~ll---v~~~i-~~P~~-------~l~~~i~~~~SR~~E~eAD~~a~~l----g  426 (482)
T 4aw6_A          362 LFAVLIGRKELFAAFGFYDSQPTLIGLLI---IFQFI-FSPYN-------EVLSFCLTVLSRRFEFQADAFAKKL----G  426 (482)
T ss_dssp             HHHHHTTCSHHHHHTTCCSCCCHHHHHHH---HHHTT-SHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred             HHHHHHcchhhHhhcCCCCcccHHHHHHH---HHHHH-HHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHc----C
Confidence            111110      0000  000 1111100   00000 01100       0111367899999999999999887    5


Q ss_pred             CCchhHHHHHHHHHhhccccccCCC-cccccCCCCChHHHHHHHHHHHHHHHHHH
Q psy768          391 YDVRVAPLFWQKMALKETQDQVGPK-MEEYLSTHPSHENRANNLESKMKEALDIR  444 (475)
Q Consensus       391 ydp~a~~~~l~kl~~~~~~~~~g~~-~~~~lsTHP~~~~RI~~L~~~i~~a~~~~  444 (475)
                      + |++++++|+||...+......++ ...|++|||++++||+++++..++++.+|
T Consensus       427 ~-p~~L~~AL~KL~~~n~s~~~~~~~~~~~~sTHP~~~eRI~~L~~~~~~~~~~y  480 (482)
T 4aw6_A          427 K-AKDLYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQALKTMKQHAENLY  480 (482)
T ss_dssp             T-HHHHHHHHHHHHHHTTCCSCCCHHHHHHSCSSCCHHHHHHHHHHC--------
T ss_pred             C-HHHHHHHHHHHHHhcccCCCCChHHHHHhcCCcCHHHHHHHHHHhhHhhhhhh
Confidence            5 89999999999876521111111 14789999999999999999998888776

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=1.1e-14  Score=124.30  Aligned_cols=75  Identities=25%  Similarity=0.241  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHhccccccCCCcceeEEEEecCCcceeEeCC----CeEEEehhhhhhcCCHHHHHHHHHHHHHhhh
Q psy768          224 PAYKRVGAVVKRLIDANKVYMEHNNFKYPITIIDDPLINAFVFPD----GRIFMFTGMFQLCQTDDELATVLSHELSHTL  299 (475)
Q Consensus       224 p~~~~v~~i~~rL~~~~~~~p~~~~~~~~v~Vv~~~~~NAFalpg----G~IvV~~GLL~~l~~edELaaVLAHElgHv~  299 (475)
                      +...+|.+++++++...+ .|     .++++|++++.+|||++|+    +.|+|++||++.+ |+|||++|||||+||+.
T Consensus        23 ~~~~~L~~~~~~l~~~~~-~~-----~~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l-~~~El~aVlaHElgH~~   95 (107)
T 3cqb_A           23 ETEHWLLETVGRQAQQAG-IG-----MPTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNM-TRDEAEAVLAHEVSHIA   95 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHT-CC-----CCEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcC-CC-----CCeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            345689999999987642 22     3599999999999999985    4599999999999 89999999999999999


Q ss_pred             cccHHH
Q psy768          300 LKHVAE  305 (475)
Q Consensus       300 ~rH~~~  305 (475)
                      ++|...
T Consensus        96 ~~h~~~  101 (107)
T 3cqb_A           96 NGDMVT  101 (107)
T ss_dssp             TTCEEE
T ss_pred             CCCHHH
Confidence            999754

>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A

Probab=96.05  E-value=0.026  Score=56.09  Aligned_cols=48  Identities=21%  Similarity=0.239  Sum_probs=33.5

Q ss_pred             eEEEEecCCcceeEeCCC-eEEEehhhhhhcCCHHHHHHHHHHHHHhhhcccHH
Q psy768          252 PITIIDDPLINAFVFPDG-RIFMFTGMFQLCQTDDELATVLSHELSHTLLKHVA  304 (475)
Q Consensus       252 ~v~Vv~~~~~NAFalpgG-~IvV~~GLL~~l~~edELaaVLAHElgHv~~rH~~  304 (475)
                      .|...+-+....+..+++ .|+|+..+     +.+.-.+.||||+||+.++|..
T Consensus        65 ~V~~~~L~~~~G~~~~~~~~I~LN~~~-----~~~rqrFTLAHELGHllLh~~~  113 (301)
T 3dte_A           65 TLTFMPMGQRDGAYDPEHHVILINSQV-----RPERQRFTLAHEISHALLLGDD  113 (301)
T ss_dssp             EEEEECCTTCCEEEETTTTEEEEETTS-----CHHHHHHHHHHHHHHHHHHHCH
T ss_pred             EEEEEcCCCCCEEEECCCcEEEEcCCC-----ChhhHHHHHHHHHHHHHhcccc
Confidence            444444334445555544 58888763     6788999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00