Psyllid ID: psy7717

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MSEEITDNTPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEEccccccccccEEEEEccccHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHcccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHcccccccccEEEEEEEccccccccccEEEEccccHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mseeitdntpegsapsspsigaeakvKVPILLratgdapiltkkKWLVHVDQNVASIISFTKksikmdpseslfiyvnqsfapspdttIRALYDSFATNgslvlnycktqawg
Flexible Loop (DISEMBL)
mseeitdntpegsapsspsigaEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNgslvlnycktqawg
Low Complexity Region (SEG)
MSEEITDNTPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG
Disordered region (IsUnstruct)
************************KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQ***
Disordered Region (DISOPRED)
***************************VPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG
Disordered Region (DISEMBL)
*******************IGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG
Disordered Region (DISPRO)
************************KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEEITDNTPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
O94817	140	Ubiquitin-like protein AT	yes	N/A	0.991	0.8	0.475	7e-27
Q5R7W1	140	Ubiquitin-like protein AT	yes	N/A	0.991	0.8	0.475	3e-26
Q9CQY1	141	Ubiquitin-like protein AT	yes	N/A	0.991	0.794	0.459	1e-25
Q3T0W7	140	Ubiquitin-like protein AT	yes	N/A	0.955	0.771	0.466	2e-25
Q2TBJ5	141	Ubiquitin-like protein AT	yes	N/A	0.991	0.794	0.450	4e-25
Q9VTU1	111	Autophagy protein 12-like	yes	N/A	0.929	0.945	0.490	9e-23
P0CM28	105	Ubiquitin-like protein AT	yes	N/A	0.814	0.876	0.380	8e-16
P0CM29	105	Ubiquitin-like protein AT	N/A	N/A	0.814	0.876	0.380	8e-16
Q1SF86	95	Ubiquitin-like protein AT	N/A	N/A	0.743	0.884	0.436	1e-15
Q9LVK3	94	Ubiquitin-like protein AT	yes	N/A	0.743	0.893	0.425	2e-15

>sp|O94817|ATG12_HUMAN Ubiquitin-like protein ATG12 OS=Homo sapiens GN=ATG12 PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 76/122 (62%), Gaps = 10/122 (8%)

Query: 2   SEEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVD 51
            E +TD +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   
Sbjct: 19  GEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERT 78

Query: 52  QNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQA 111
           + +  +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QA
Sbjct: 79  RTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQA 138

Query: 112 WG 113
           WG
Sbjct: 139 WG 140

Ubiquitin-like protein required for autophagy. Conjugated to ATG3 and ATG5.
Homo sapiens (taxid: 9606)

>sp|Q5R7W1|ATG12_PONAB Ubiquitin-like protein ATG12 OS=Pongo abelii GN=ATG12 PE=2 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 75/122 (61%), Gaps = 10/122 (8%)

Query: 2   SEEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVD 51
            E +TD +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   
Sbjct: 19  GEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERT 78

Query: 52  QNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQA 111
           + +   I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QA
Sbjct: 79  RTIQGPIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQA 138

Query: 112 WG 113
           WG
Sbjct: 139 WG 140

Ubiquitin-like protein required for autophagy. Conjugated to ATG3 and ATG5.

Pongo abelii (taxid: 9601)

>sp|Q9CQY1|ATG12_MOUSE Ubiquitin-like protein ATG12 OS=Mus musculus GN=Atg12 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 75/122 (61%), Gaps = 10/122 (8%)

Query: 2   SEEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVD 51
            E + + +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   
Sbjct: 20  GESLPELSPETATPEPPSSAAVSPGTEEPPGDTKKKIDILLKAVGDTPIMKTKKWAVERT 79

Query: 52  QNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQA 111
           + +  +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QA
Sbjct: 80  RTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQA 139

Query: 112 WG 113
           WG
Sbjct: 140 WG 141

Ubiquitin-like protein required for autophagy. Conjugated to ATG3 and ATG5.

Mus musculus (taxid: 10090)

>sp|Q3T0W7|ATG12_BOVIN Ubiquitin-like protein ATG12 OS=Bos taurus GN=ATG12 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 73/118 (61%), Gaps = 10/118 (8%)

Query: 6   TDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVDQNVA 55
           T+ +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   + + 
Sbjct: 23  TEVSPETATPEPPSSAAVSPGTEEPVGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQ 82

Query: 56  SIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
            +  F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct: 83  GLFDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140

Ubiquitin-like protein required for autophagy. Conjugated to ATG3 and ATG5.

Bos taurus (taxid: 9913)

>sp|Q2TBJ5|ATG12_RAT Ubiquitin-like protein ATG12 OS=Rattus norvegicus GN=Atg12 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 10/122 (8%)

Query: 2   SEEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVD 51
            E + + +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   
Sbjct: 20  GESLLELSPETAIPEPPSSVAVSPGTEEPPGDTKKKIDILLKAVGDTPIMKTKKWAVERT 79

Query: 52  QNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQA 111
           + V ++I F +K +++  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QA
Sbjct: 80  RTVQALIDFIRKFLRLLASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQA 139

Query: 112 WG 113
           WG
Sbjct: 140 WG 141

Ubiquitin-like protein required for autophagy. Conjugated to ATG3 and ATG5.

Rattus norvegicus (taxid: 10116)

>sp|Q9VTU1|APG12_DROME Autophagy protein 12-like OS=Drosophila melanogaster GN=Atg12 PE=3 SV=3

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 68/108 (62%), Gaps = 3/108 (2%)

Query: 9   TPEGSAPSSPSIGAEAK---VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSI 65
           TPE  A  S S    A     K+ ILL ATG+ PI+ K+ W V  ++ V  I +F  K +
Sbjct: 4   TPESQAALSTSSSTPADKDGSKICILLNATGNVPIIKKRTWTVDPNKTVGWIQTFIHKFL 63

Query: 66  KMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           K+D SE +F+YVNQ+FAP+PD  I+ LY+   TNG LVL YCK QAWG
Sbjct: 64  KLDASEQIFLYVNQTFAPAPDQIIKNLYECHGTNGKLVLYYCKNQAWG 111

Required for autophagy.

Drosophila melanogaster (taxid: 7227)

>sp|P0CM28|ATG12_CRYNJ Ubiquitin-like protein ATG12 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG12 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%)

Query: 22  AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSF 81
           A+A+  V +  ++ G API+    +         ++I F ++ + M   +SLF Y+N +F
Sbjct: 14  AQAQPAVVVRFKSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINAAF 73

Query: 82  APSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           AP+PD T+ +LY SF T G L++NY  TQAWG
Sbjct: 74  APAPDDTVGSLYKSFGTEGHLIVNYSNTQAWG 105

Ubiquitin-like protein involved in the cytoplasm to vacuole transport (Cvt) and autophagy. Conjugated to ATG5.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM29|ATG12_CRYNB Ubiquitin-like protein ATG12 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ATG12 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%)

Query: 22  AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSF 81
           A+A+  V +  ++ G API+    +         ++I F ++ + M   +SLF Y+N +F
Sbjct: 14  AQAQPAVVVRFKSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINAAF 73

Query: 82  APSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           AP+PD T+ +LY SF T G L++NY  TQAWG
Sbjct: 74  APAPDDTVGSLYKSFGTEGHLIVNYSNTQAWG 105

Ubiquitin-like protein involved in the cytoplasm to vacuole transport (Cvt) and autophagy. Conjugated to ATG5.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q1SF86|ATG12_MEDTR Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 27  KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
           KV + LRATGDAPIL + K+ +      A +I F ++ +     ESLF+YVN +F+P+PD
Sbjct: 12  KVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLH---RESLFVYVNSAFSPNPD 68

Query: 87  TTIRALYDSFATNGSLVLNYCKTQAWG 113
             +  LY++F  +G LV+NY  + AWG
Sbjct: 69  ELVIDLYNNFGFDGKLVVNYACSMAWG 95

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.

Medicago truncatula (taxid: 3880)

>sp|Q9LVK3|AT12B_ARATH Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 3/87 (3%)

Query: 27  KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
           K+ + LRATG APIL + K+ V      A++I F ++ +    S+SLF+YVN +F+P+PD
Sbjct: 11  KIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPD 67

Query: 87  TTIRALYDSFATNGSLVLNYCKTQAWG 113
            ++  LY++F  +G LV+NY  + AWG
Sbjct: 68  ESVIDLYNNFGFDGKLVVNYACSMAWG 94

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system involving also ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
328707377	111	PREDICTED: ubiquitin-like protein ATG12-	0.946	0.963	0.539	1e-28
242010636	127	conserved hypothetical protein [Pediculu	1.0	0.889	0.480	1e-27
357631472	122	autophagy related protein Atg12-like pro	0.938	0.868	0.518	1e-27
308512685	126	autophagy-like protein Atg12 [Biston bet	0.787	0.706	0.595	8e-27
215820608	126	autophagy related protein Atg12-like pro	0.893	0.801	0.518	8e-26
403256086	140	PREDICTED: ubiquitin-like protein ATG12	1.0	0.807	0.508	2e-25
156536947	142	PREDICTED: ubiquitin-like protein ATG12-	0.929	0.739	0.486	3e-25
52632420	187	ATG12 autophagy related 12 homolog (S. c	0.982	0.593	0.479	3e-25
426349693	140	PREDICTED: ubiquitin-like protein ATG12	0.982	0.792	0.479	3e-25
290560746	140	ubiquitin-like protein ATG12 [Homo sapie	0.991	0.8	0.475	3e-25

>gi|328707377|ref|XP_001943670.2| PREDICTED: ubiquitin-like protein ATG12-like [Acyrthosiphon pisum]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 82/113 (72%), Gaps = 6/113 (5%)

Query: 1   MSEEITDNTPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISF 60
           M EE+T      S  S+  +  E K K+ ILL+ATG+APIL  KKW+V  ++ VASI  F
Sbjct: 1   MDEELT------SEFSTSRVVTENKEKIEILLKATGNAPILKTKKWMVEKEKTVASIHEF 54

Query: 61  TKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
            +K +K+DPS+SLF+YVNQ+FAP PD T++ LYD + T+G L+L+YCKTQAWG
Sbjct: 55  LRKLLKLDPSDSLFLYVNQAFAPPPDQTMKNLYDCYNTDGRLILHYCKTQAWG 107

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010636|ref|XP_002426068.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510090|gb|EEB13330.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 84/127 (66%), Gaps = 14/127 (11%)

Query: 1   MSEEITDNT-PE-------------GSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKW 46
           MSE+  DNT PE              +A    +     K K+ +LL+ATG+API+ KKKW
Sbjct: 1   MSEDNKDNTDPETLKVENLAIEDKNAAAGDEQAATKTDKQKIDVLLKATGNAPIMKKKKW 60

Query: 47  LVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY 106
            V  ++ + S++ F KK ++++PSE+LF+YVNQ FAPSPD TI+ LYD F ++G LVL+Y
Sbjct: 61  SVDNEKKIGSVVEFIKKYLRLEPSENLFLYVNQCFAPSPDQTIKNLYDCFGSDGKLVLHY 120

Query: 107 CKTQAWG 113
           CKTQAWG
Sbjct: 121 CKTQAWG 127

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631472|gb|EHJ78946.1| autophagy related protein Atg12-like protein [Danaus plexippus]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 75/106 (70%)

Query: 8   NTPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKM 67
           N+ +     +   G   KVK+ ILL+ATGDAPI+ KKKW V  ++ +  I+ F KK +K+
Sbjct: 17  NSEKDEQKDNSDRGKTDKVKIDILLKATGDAPIMKKKKWAVDAEKPIGWIMEFVKKYLKL 76

Query: 68  DPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           +P E LF+YVNQ+FAPSPD  I+ LY+ F T+G LVL+YCK+QAWG
Sbjct: 77  EPEERLFLYVNQTFAPSPDQLIKNLYECFGTDGKLVLHYCKSQAWG 122

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308512685|gb|ADO32996.1| autophagy-like protein Atg12 [Biston betularia]

 Score =  124 bits (310), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 71/89 (79%)

Query: 25  KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           KVKV ILL+ATG+API+ KKKW V  ++ +  II F KK +K++P E LF+YVNQ+FAPS
Sbjct: 38  KVKVDILLKATGNAPIMKKKKWAVDAEKPIGWIIEFVKKYLKLEPDEKLFVYVNQTFAPS 97

Query: 85  PDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           PD  ++ LY+ F+T+G LVL+YCK+QAWG
Sbjct: 98  PDQIVKNLYECFSTDGKLVLHYCKSQAWG 126

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215820608|ref|NP_001135963.1| autophagy related protein Atg12-like protein [Bombyx mori] gi|213390048|gb|ACJ46063.1| autophagy related protein Atg12-like protein [Bombyx mori]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 5/106 (4%)

Query: 8   NTPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKM 67
           +  E S PS        K+KV ILL+ATG+API+ KKKW V  ++ +  I+ F KK +K+
Sbjct: 26  DNKENSDPSKSD-----KLKVDILLKATGNAPIMKKKKWAVDAEKPIGWIMEFVKKYLKL 80

Query: 68  DPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           +  E LF+YVNQ+FAPSPD  +R LY+ F T+G LVL+YCK+QAWG
Sbjct: 81  EADEKLFLYVNQTFAPSPDQIVRNLYECFGTDGKLVLHYCKSQAWG 126

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403256086|ref|XP_003920730.1| PREDICTED: ubiquitin-like protein ATG12 [Saimiri boliviensis boliviensis]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 75/116 (64%), Gaps = 3/116 (2%)

Query: 1   MSEEITDNTPEGSAPSSPSI---GAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASI 57
           +S EIT   P  SA  SP I     + K K+ ILL+A GD PI+  KKW V   + +  +
Sbjct: 25  VSPEITTPEPPSSAAVSPGIEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGL 84

Query: 58  ISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct: 85  IDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156536947|ref|XP_001608240.1| PREDICTED: ubiquitin-like protein ATG12-like [Nasonia vitripennis]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 73/109 (66%), Gaps = 4/109 (3%)

Query: 5   ITDNTPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKS 64
           I  N     AP  P  G     K+ +LL+ATGDAPI+ KKKW+V  DQ +  I  F KK 
Sbjct: 38  IDANLTNNEAPPPPVKGK----KIEVLLKATGDAPIMMKKKWVVSQDQTIGWISEFIKKC 93

Query: 65  IKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           IK+   E LF+Y+NQ+FAP+PD T++ LYD + ++G L+++YCK+QAWG
Sbjct: 94  IKLGTEERLFLYINQTFAPAPDQTVKNLYDCYGSDGKLIIHYCKSQAWG 142

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|52632420|gb|AAH12266.2| ATG12 autophagy related 12 homolog (S. cerevisiae) [Homo sapiens] gi|119569340|gb|EAW48955.1| ATG12 autophagy related 12 homolog (S. cerevisiae), isoform CRA_b [Homo sapiens] gi|119569341|gb|EAW48956.1| ATG12 autophagy related 12 homolog (S. cerevisiae), isoform CRA_b [Homo sapiens] gi|189031605|gb|ACD74941.1| Atg12 [Homo sapiens] gi|307685835|dbj|BAJ20848.1| ATG12 autophagy related 12 homolog [synthetic construct]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 10/121 (8%)

Query: 3   EEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVDQ 52
           E +TD +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   +
Sbjct: 67  EGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTR 126

Query: 53  NVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAW 112
            +  +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAW
Sbjct: 127 TIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAW 186

Query: 113 G 113
           G
Sbjct: 187 G 187

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426349693|ref|XP_004042425.1| PREDICTED: ubiquitin-like protein ATG12 [Gorilla gorilla gorilla]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 10/121 (8%)

Query: 3   EEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVDQ 52
           E +TD +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   +
Sbjct: 20  EGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTR 79

Query: 53  NVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAW 112
            +  +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAW
Sbjct: 80  TIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAW 139

Query: 113 G 113
           G
Sbjct: 140 G 140

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|290560746|ref|NP_004698.3| ubiquitin-like protein ATG12 [Homo sapiens] gi|17366241|sp|O94817.1|ATG12_HUMAN RecName: Full=Ubiquitin-like protein ATG12; AltName: Full=Autophagy-related protein 12; Short=APG12-like gi|4115731|dbj|BAA36493.1| Apg12 [Homo sapiens]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 76/122 (62%), Gaps = 10/122 (8%)

Query: 2   SEEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVD 51
            E +TD +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   
Sbjct: 19  GEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERT 78

Query: 52  QNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQA 111
           + +  +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QA
Sbjct: 79  RTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQA 138

Query: 112 WG 113
           WG
Sbjct: 139 WG 140

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
UNIPROTKB|C1IDX9	187	ATG12 "Atg12" [Homo sapiens (t	0.982	0.593	0.479	3.6e-25
UNIPROTKB|O94817	140	ATG12 "Ubiquitin-like protein	0.982	0.792	0.479	3.6e-25
UNIPROTKB|D7RA34	140	ATG12 "Autophagy related 12-li	1.0	0.807	0.482	1.2e-24
UNIPROTKB|F1MZE2	128	ATG12 "Ubiquitin-like protein	0.991	0.875	0.487	1.6e-24
UNIPROTKB|E2R3U3	163	ATG12 "Uncharacterized protein	1.0	0.693	0.474	1.6e-24
MGI|MGI:1914776	141	Atg12 "autophagy related 12" [	1.0	0.801	0.482	1.6e-24
UNIPROTKB|F1P145	148	ATG12 "Uncharacterized protein	0.920	0.702	0.495	2e-24
UNIPROTKB|Q3T0W7	140	ATG12 "Ubiquitin-like protein	0.991	0.8	0.478	4.2e-24
RGD|1306306	141	Atg12 "autophagy related 12" [	0.982	0.787	0.462	1.8e-23
ZFIN|ZDB-GENE-071205-7	120	atg12 "ATG12 autophagy related	0.884	0.833	0.47	2.6e-22

UNIPROTKB|C1IDX9 ATG12 "Atg12" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 58/121 (47%), Positives = 76/121 (62%)

Query:     3 EEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVDQ 52
             E +TD +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   +
Sbjct:    67 EGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTR 126

Query:    53 NVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAW 112
              +  +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAW
Sbjct:   127 TIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAW 186

Query:   113 G 113
             G
Sbjct:   187 G 187

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|O94817 ATG12 "Ubiquitin-like protein ATG12" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 58/121 (47%), Positives = 76/121 (62%)

Query:     3 EEITDNTPEGSAPSSPSIGA----------EAKVKVPILLRATGDAPILTKKKWLVHVDQ 52
             E +TD +PE + P  PS  A          + K K+ ILL+A GD PI+  KKW V   +
Sbjct:    20 EGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTR 79

Query:    53 NVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAW 112
              +  +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAW
Sbjct:    80 TIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAW 139

Query:   113 G 113
             G
Sbjct:   140 G 140

GO:0043234 "protein complex" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0034045 "pre-autophagosomal structure membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

UNIPROTKB|D7RA34 ATG12 "Autophagy related 12-like protein" [Sus scrofa (taxid:9823)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 56/116 (48%), Positives = 72/116 (62%)

Query:     1 MSEEITDNTPEGSAPSSPSI---GAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASI 57
             +S E     P  SA  SP       + K K+ ILL+A GD PI+  KKW V   + +  +
Sbjct:    25 VSPETATPEPPSSASVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGL 84

Query:    58 ISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
             I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct:    85 IDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

UNIPROTKB|F1MZE2 ATG12 "Ubiquitin-like protein ATG12" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:     1 MSEEITDNTPEGSAPSSPS----IGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVAS 56
             +S E     P  SA  SP     +G + K K+ ILL+A GD PI+  KKW V   + +  
Sbjct:    13 VSPETATPEPPSSAAVSPGTEEPVG-DTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQG 71

Query:    57 IISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
             +I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct:    72 LIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 128

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

UNIPROTKB|E2R3U3 ATG12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 55/116 (47%), Positives = 72/116 (62%)

Query:     1 MSEEITDNTPEGSAPSSPSI---GAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASI 57
             +S E     P  SA  SP       + K K+ +LL+A GD PI+  KKW V   + +  +
Sbjct:    48 VSPETATPEPPSSAAVSPGTEEPAGDTKKKIDVLLKAVGDTPIMKTKKWAVERTRTIQGL 107

Query:    58 ISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
             I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct:   108 IDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 163

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

MGI|MGI:1914776 Atg12 "autophagy related 12" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 56/116 (48%), Positives = 72/116 (62%)

Query:     1 MSEEITDNTPEGSAPSSPSIG---AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASI 57
             +S E     P  SA  SP       + K K+ ILL+A GD PI+  KKW V   + +  +
Sbjct:    26 LSPETATPEPPSSAAVSPGTEEPPGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGL 85

Query:    58 ISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
             I F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct:    86 IDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 141

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=ISO;TAS

GO:0016020 "membrane" evidence=ISO

GO:0034045 "pre-autophagosomal structure membrane" evidence=IDA

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|F1P145 ATG12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 52/105 (49%), Positives = 70/105 (66%)

Query:     9 TPEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMD 68
             +P GS P +     +AK K+ +LL+A GD PI+  KKW V   + +  +  F KK +K+ 
Sbjct:    45 SPAGS-PGTEDPAGDAKKKIDVLLKAVGDTPIMKTKKWAVERTRTIQGLCDFIKKFLKLM 103

Query:    69 PSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
              SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct:   104 ASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 148

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

UNIPROTKB|Q3T0W7 ATG12 "Ubiquitin-like protein ATG12" [Bos taurus (taxid:9913)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 56/117 (47%), Positives = 73/117 (62%)

Query:     1 MSEEITDNTPEGSAPSSPS----IGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVAS 56
             +S E     P  SA  SP     +G + K K+ ILL+A GD PI+  KKW V   + +  
Sbjct:    25 VSPETATPEPPSSAAVSPGTEEPVG-DTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQG 83

Query:    57 IISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
             +  F KK +K+  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct:    84 LFDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140

GO:0005737 "cytoplasm" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

RGD|1306306 Atg12 "autophagy related 12" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 56/121 (46%), Positives = 76/121 (62%)

Query:     3 EEITDNTPEGSAPSSPSI-----GAE-----AKVKVPILLRATGDAPILTKKKWLVHVDQ 52
             E + + +PE + P  PS      G E      K K+ ILL+A GD PI+  KKW V   +
Sbjct:    21 ESLLELSPETAIPEPPSSVAVSPGTEEPPGDTKKKIDILLKAVGDTPIMKTKKWAVERTR 80

Query:    53 NVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAW 112
              V ++I F +K +++  SE LFIYVNQSFAPSPD  +  LY+ F ++G LVL+YCK+QAW
Sbjct:    81 TVQALIDFIRKFLRLLASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAW 140

Query:   113 G 113
             G
Sbjct:   141 G 141

GO:0000045 "autophagic vacuole assembly" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0006914 "autophagy" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

ZFIN|ZDB-GENE-071205-7 atg12 "ATG12 autophagy related 12 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 47/100 (47%), Positives = 68/100 (68%)

Query:    14 APSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESL 73
             A +  S  ++ K K+ +LL+A G  PI+  KKW V   + + S+  F  + +K++PSE L
Sbjct:    21 AVTDHSESSDEKKKIDVLLKAVGVTPIMKTKKWSVERRRTIQSLAQFISRFLKLEPSEQL 80

Query:    74 FIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
             FIYVNQSFAPSPD  +  L++ F ++G LVL+YCK+QAWG
Sbjct:    81 FIYVNQSFAPSPDQEVGVLFECFGSDGKLVLHYCKSQAWG 120

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94817	ATG12_HUMAN	No assigned EC number	0.4754	0.9911	0.8	yes	N/A
Q9CQY1	ATG12_MOUSE	No assigned EC number	0.4590	0.9911	0.7943	yes	N/A
P0CM28	ATG12_CRYNJ	No assigned EC number	0.3804	0.8141	0.8761	yes	N/A
Q9US24	ATG12_SCHPO	No assigned EC number	0.3793	0.7699	0.6590	yes	N/A
Q9VTU1	APG12_DROME	No assigned EC number	0.4907	0.9292	0.9459	yes	N/A
Q86CR6	ATG12_DICDI	No assigned EC number	0.3214	0.9734	0.8870	yes	N/A
Q7XPR1	ATG8B_ORYSJ	No assigned EC number	0.2545	0.9380	0.8907	yes	N/A
Q69NP0	ATG12_ORYSJ	No assigned EC number	0.3894	0.8053	0.9784	yes	N/A
Q5R7W1	ATG12_PONAB	No assigned EC number	0.4754	0.9911	0.8	yes	N/A
Q3T0W7	ATG12_BOVIN	No assigned EC number	0.4661	0.9557	0.7714	yes	N/A
Q2TBJ5	ATG12_RAT	No assigned EC number	0.4508	0.9911	0.7943	yes	N/A
Q9LVK3	AT12B_ARATH	No assigned EC number	0.4252	0.7433	0.8936	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	113
pfam04110	87	pfam04110, APG12, Ubiquitin-like autophagy protein	2e-38
cd01612	87	cd01612, APG12_C, Ubiquitin-like domain of APG12	6e-37
pfam02991	104	pfam02991, Atg8, Autophagy protein Atg8 ubiquitin	3e-10
cd01611	112	cd01611, GABARAP, Ubiquitin domain of GABA-recepto	2e-09

>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12

 Score =  123 bits (311), Expect = 2e-38
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query: 27  KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
           K+ I LRA GDAPIL K K+ V+  Q  AS+I F KK +K+  S+SLF+YVN SFAPSPD
Sbjct: 1   KITIRLRAIGDAPILKKSKFKVNPSQTFASVILFLKKFLKLQASDSLFLYVNNSFAPSPD 60

Query: 87  TTIRALYDSFATNGSLVLNYCKTQAWG 113
             +  LY+ F T+G LVLNYC + AWG
Sbjct: 61  QIVGNLYECFGTDGKLVLNYCISVAWG 87

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. The Apg12 system is one of the ubiquitin-like protein conjugation systems conserved in eukaryotes. It was first discovered in yeast during systematic analyses of the apg mutants defective in autophagy. Covalent attachment of Apg12-Apg5 is essential for autophagy. Length = 87

>gnl|CDD|176356 cd01612, APG12_C, Ubiquitin-like domain of APG12

 Score =  120 bits (302), Expect = 6e-37
 Identities = 40/87 (45%), Positives = 58/87 (66%)

Query: 27  KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
           KV I  +  G APIL +K + +   Q+  ++I F +K +K+  S+SLF+Y+N SFAPSPD
Sbjct: 1   KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPD 60

Query: 87  TTIRALYDSFATNGSLVLNYCKTQAWG 113
             +  LY  F TNG L+++YCKT A+G
Sbjct: 61  ENVGNLYRCFGTNGELIVSYCKTVAFG 87

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5. Length = 87

>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 27 KVP-ILLRATG-DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
          ++P I+ +A+G D P + KKK+LV  D  V   I   +K I++ P +++F++VN +  P 
Sbjct: 16 RIPVIIEKASGSDLPDIDKKKYLVPADLTVGQFIYIIRKRIQLRPEKAIFLFVNNTL-PP 74

Query: 85 PDTTIRALYDSF 96
             T+ ALY+  
Sbjct: 75 TSATMSALYEEE 86

Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. Length = 104

>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein

 Score = 50.7 bits (122), Expect = 2e-09
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 27 KVPILL-RATG-DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
          ++P+++ R    D P L KKK+LV  D  V   +   +K I++ P ++LF++VN S  P+
Sbjct: 24 RIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPT 83

Query: 85 PDTTIRALYDSF 96
             T+  LY+  
Sbjct: 84 -SATMSQLYEEH 94

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	100.0
KOG1654|consensus	116		100.0
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	100.0
PTZ00380	121	microtubule-associated protein (MAP); Provisional	100.0
KOG3439|consensus	116		100.0
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	100.0
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	96.98
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	96.17
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	94.63
PF13019	162	Telomere_Sde2: Telomere stability and silencing	94.48
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	91.74
KOG2660|consensus	331		87.04
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	86.3
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	85.79
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	85.34
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	82.51
KOG1209|consensus	289		80.83
KOG2976|consensus	278		80.57

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=3.2e-40  Score=229.94  Aligned_cols=97  Identities=30%  Similarity=0.590  Sum_probs=93.1

Q ss_pred             CCccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHH
Q psy7717          16 SSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALY   93 (113)
Q Consensus        16 ~~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY   93 (113)
                      .+..||+|||+|||||||+.  +++|.|+++||+||+++||++|+.+||++|++++++||||||||. +|++|++||+||
T Consensus        13 e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~-~p~~~~~~~~lY   91 (112)
T cd01611          13 EVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNS-LPPTSATMSQLY   91 (112)
T ss_pred             HHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCc-cCCchhHHHHHH
Confidence            35679999999999999975  799999999999999999999999999999999999999999995 799999999999


Q ss_pred             HhcCC-CCEEEEEEccccccC
Q psy7717          94 DSFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        94 ~~~kd-DGfLyi~Ys~~~afG  113 (113)
                      ++|+| ||||||+||+++|||
T Consensus        92 ~~~kd~DGfLyl~Ys~~~tfG  112 (112)
T cd01611          92 EEHKDEDGFLYMTYSSEETFG  112 (112)
T ss_pred             HHhCCCCCEEEEEEeccccCC
Confidence            99999 999999999999999

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=100.00  E-value=1.1e-39  Score=224.75  Aligned_cols=96  Identities=29%  Similarity=0.591  Sum_probs=84.6

Q ss_pred             CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      +..||+|||+|||||||+.  +++|.|+++|||||.++||+||+..||++|+++++++||||||| .+|+++++||+||+
T Consensus         6 ~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~-~lp~~s~tm~elY~   84 (104)
T PF02991_consen    6 SERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNN-TLPSTSSTMGELYE   84 (104)
T ss_dssp             HHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTT-BESSTTSBHHHHHH
T ss_pred             HHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcC-cccchhhHHHHHHH
Confidence            4679999999999999986  56999999999999999999999999999999999999999999 57999999999999


Q ss_pred             hcCC-CCEEEEEEccccccC
Q psy7717          95 SFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~~~afG  113 (113)
                      +||| ||||||+||++++||
T Consensus        85 ~~kdeDGFLY~~Ys~e~tFG  104 (104)
T PF02991_consen   85 KYKDEDGFLYMTYSSEETFG  104 (104)
T ss_dssp             HHB-TTSSEEEEEESSSSBC
T ss_pred             HhCCCCCeEEEEeccccccC
Confidence            9999 999999999999999

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>KOG1654|consensus

Probab=100.00  E-value=1.1e-38  Score=220.64  Aligned_cols=97  Identities=28%  Similarity=0.557  Sum_probs=92.1

Q ss_pred             CCccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHH
Q psy7717          16 SSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALY   93 (113)
Q Consensus        16 ~~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY   93 (113)
                      .+..||+|||+|||||+|..  +++|.|+|+|||||.++||+||+..|||||+|++++++||+|||.. |..+++|++||
T Consensus        17 E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~-p~ts~~ms~~Y   95 (116)
T KOG1654|consen   17 EVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTS-PPTSATMSALY   95 (116)
T ss_pred             HHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcC-CcchhhHHHHH
Confidence            46779999999999999976  5899999999999999999999999999999999999999999975 66699999999


Q ss_pred             HhcCC-CCEEEEEEccccccC
Q psy7717          94 DSFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        94 ~~~kd-DGfLyi~Ys~~~afG  113 (113)
                      +++|| ||||||+||++++||
T Consensus        96 e~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   96 EEEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             HhhcccCcEEEEEeccccccC
Confidence            99999 999999999999999

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=100.00  E-value=3.1e-37  Score=206.54  Aligned_cols=87  Identities=46%  Similarity=0.877  Sum_probs=85.2

Q ss_pred             eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717          27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY  106 (113)
Q Consensus        27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y  106 (113)
                      ||.|.|+++|++|+|+++||+||+++||++|+.+||++|+++++++|||||||+|+|++|++||+||++|++||||||+|
T Consensus         1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Y   80 (87)
T cd01612           1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSY   80 (87)
T ss_pred             CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999995599999999


Q ss_pred             ccccccC
Q psy7717         107 CKTQAWG  113 (113)
Q Consensus       107 s~~~afG  113 (113)
                      |.++|||
T Consensus        81 s~~~afG   87 (87)
T cd01612          81 CKTVAFG   87 (87)
T ss_pred             eCccccC
Confidence            9999999

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=100.00  E-value=8.8e-36  Score=209.84  Aligned_cols=94  Identities=18%  Similarity=0.284  Sum_probs=87.5

Q ss_pred             CCccccccCCCeeEEEEEecCCCCCcccceE-EecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          16 SSPSIGAEAKVKVPILLRATGDAPILTKKKW-LVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        16 ~~~~i~~k~p~kVpVi~e~~~~~P~L~k~Kf-lV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      .+..||+|||+|||||+|+.++.-  +|+|| +||.++||+||+..||+||+|++++ +||||||. +|+++++||+||+
T Consensus        16 e~~~Ir~kyPdrIPVIvEk~~~s~--dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~-lp~~s~~mg~lYe   91 (121)
T PTZ00380         16 ECARLQAKYPGHVAVVVEAAEKAG--SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGS-TPAVTATVGDIAD   91 (121)
T ss_pred             HHHHHHHHCCCccEEEEeecCCCC--CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCc-cCCccchHHHHHH
Confidence            356799999999999999976554  78999 6999999999999999999999999 99999995 5999999999999


Q ss_pred             hcCC-CCEEEEEEccccccC
Q psy7717          95 SFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~~~afG  113 (113)
                      +||| ||||||+||++++||
T Consensus        92 ~~KDeDGFLYi~Ys~e~tFG  111 (121)
T PTZ00380         92 ACKRDDGFLYVSVRTEQAMG  111 (121)
T ss_pred             HhcCCCCeEEEEEccccccc
Confidence            9999 999999999999999

>KOG3439|consensus

Probab=100.00  E-value=3.8e-33  Score=192.98  Aligned_cols=111  Identities=50%  Similarity=0.822  Sum_probs=99.0

Q ss_pred             cccccCCCCCCCCCCccccccCC--CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCc
Q psy7717           3 EEITDNTPEGSAPSSPSIGAEAK--VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQS   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~~i~~k~p--~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~   80 (113)
                      ||-+++.|.+++..-..-++..+  .||.|.++++|++|+|+++||.|++++||+.++.||||.|+|+++++|||||||+
T Consensus         4 ~~~~~~~~t~~~~~~~t~~~~~~~~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s   83 (116)
T KOG3439|consen    4 EEQIETIPTSAATSKATESASEKNIRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS   83 (116)
T ss_pred             ccccccCCccccccccccccCCCCcceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence            34456666666664333334334  7999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccchHHHHHHhcCCCCEEEEEEccccccC
Q psy7717          81 FAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG  113 (113)
Q Consensus        81 ~~P~~d~t~~~LY~~~kdDGfLyi~Ys~~~afG  113 (113)
                      |+|+||+++|+||+||+.||.|.++||..+|||
T Consensus        84 FAPsPDq~v~~Ly~cf~~d~~Lvl~Yc~s~A~G  116 (116)
T KOG3439|consen   84 FAPSPDQIVGNLYECFGTDGKLVLNYCISVAWG  116 (116)
T ss_pred             cCCCchhHHHHHHHhcCCCCEEEEEEeeecccC
Confidence            999999999999999999999999999999999

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=100.00  E-value=1.8e-33  Score=188.35  Aligned_cols=87  Identities=51%  Similarity=0.953  Sum_probs=68.4

Q ss_pred             eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717          27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY  106 (113)
Q Consensus        27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y  106 (113)
                      ||.|.|+++|++|+|+++||+|.++.+|+.++.||||+|+++++++||+|||++|+|++|+++|+||+||+.||.|.|+|
T Consensus         1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~~Liv~Y   80 (87)
T PF04110_consen    1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNGELIVSY   80 (87)
T ss_dssp             EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH-BTTBEEEEE
T ss_pred             CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhCCCCEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccC
Q psy7717         107 CKTQAWG  113 (113)
Q Consensus       107 s~~~afG  113 (113)
                      |.++|||
T Consensus        81 s~t~A~G   87 (87)
T PF04110_consen   81 SKTPAWG   87 (87)
T ss_dssp             ESSS---
T ss_pred             ecccccC
Confidence            9999999

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.98  E-value=0.0011  Score=49.93  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=42.5

Q ss_pred             ccCCCeeEEEEEecCCCCCcccceEEecCC---ccHHhHHHHHHhhh--CCCCCCeEEEEEcCccCCCccchHHHHHHhc
Q psy7717          22 AEAKVKVPILLRATGDAPILTKKKWLVHVD---QNVASIISFTKKSI--KMDPSESLFIYVNQSFAPSPDTTIRALYDSF   96 (113)
Q Consensus        22 ~k~p~kVpVi~e~~~~~P~L~k~KflV~~~---~tv~~~~~~lrk~L--~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~   96 (113)
                      .....+|||++--.+..|.++...-....+   .|+++++..+=-.+  .-+...-..++|++ +.++.|+.+..||+++
T Consensus       105 ~~~~r~IPiRiy~~~~~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~iihG-I~ipldtpl~~l~~~l  183 (197)
T PF04106_consen  105 PSKFRHIPIRIYLPGSVPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVIIHG-IEIPLDTPLQWLYENL  183 (197)
T ss_dssp             -SS-SB--EEEEE-SS--EE----B----TT---BTGGGHHHHHTTT--T------EEEEETT-EEE-TTSBHHHHHHHH
T ss_pred             CCCcceeEEEEEeCCCcceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEEeC-eeCCCCCcHHHHHHHc
Confidence            456678999999877766665544333222   35665554442221  11233457778888 4577899999999999


Q ss_pred             CC-CCEEEEEEc
Q psy7717          97 AT-NGSLVLNYC  107 (113)
Q Consensus        97 kd-DGfLyi~Ys  107 (113)
                      .- ||||||.-+
T Consensus       184 ~~~D~FLhivv~  195 (197)
T PF04106_consen  184 SYPDGFLHIVVR  195 (197)
T ss_dssp             --TTS-EEEEEE
T ss_pred             cCCCCeEEEEEE
Confidence            99 999999753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=96.17  E-value=0.069  Score=43.08  Aligned_cols=88  Identities=23%  Similarity=0.399  Sum_probs=71.1

Q ss_pred             ccccCCCeeEEEEEec-CCC-CCcccc-----------------eEEecCCccHHhHHHHHHhhh--------------C
Q psy7717          20 IGAEAKVKVPILLRAT-GDA-PILTKK-----------------KWLVHVDQNVASIISFTKKSI--------------K   66 (113)
Q Consensus        20 i~~k~p~kVpVi~e~~-~~~-P~L~k~-----------------KflV~~~~tv~~~~~~lrk~L--------------~   66 (113)
                      +-.+.+.||..++.+. +.. |.+++-                 |.-.+.-+.|..+..+|-.|+              .
T Consensus       207 ~p~ke~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~  286 (331)
T PF11816_consen  207 IPPKEPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKK  286 (331)
T ss_pred             CCCCCCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccC
Confidence            3345678999999986 333 445554                 888889999999999999999              4


Q ss_pred             CCCCCeEEEEEcCccCCCccchHHHHHHh-cCCCCEEEEEEcc
Q psy7717          67 MDPSESLFIYVNQSFAPSPDTTIRALYDS-FATNGSLVLNYCK  108 (113)
Q Consensus        67 l~~~~sLFlyVnn~~~P~~d~t~~~LY~~-~kdDGfLyi~Ys~  108 (113)
                      +.+++.|=|+||+..+|+ ++||+.+=.. .|..|-|.|.|..
T Consensus       287 ~~p~e~lEl~C~gqvL~~-~mtLaTVr~~~WK~~~di~L~YR~  328 (331)
T PF11816_consen  287 LKPEEWLELLCNGQVLPP-DMTLATVRTFIWKSSGDIVLHYRR  328 (331)
T ss_pred             CCCCceEEEEeCCeEcCC-cCCHHHHHHhhccCCCeEEEEEEe
Confidence            578899999999987554 9999999888 5569999999964

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=94.63  E-value=0.2  Score=30.95  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=39.1

Q ss_pred             ccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          42 TKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        42 ~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      +.-.|.|..+.+|+.++...+++.++++.+++-|+.++.- -.+++|++++
T Consensus        11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~-L~~~~T~~~~   60 (72)
T PF11976_consen   11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKR-LDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEE-E-TTSCHHHH
T ss_pred             CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEE-cCCCCCHHHC
Confidence            3667899999999999999999999998567777777754 3446777765

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=94.48  E-value=0.32  Score=36.10  Aligned_cols=79  Identities=14%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             eEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEc-C-ccCCCccchHHHHHHhcCCCCEEEEE
Q psy7717          28 VPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVN-Q-SFAPSPDTTIRALYDSFATNGSLVLN  105 (113)
Q Consensus        28 VpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVn-n-~~~P~~d~t~~~LY~~~kdDGfLyi~  105 (113)
                      |.|.|......+.-...-+-+|.+.|++++...|..++.......++|+++ | .+.+..+..+..+.....+.+|+.+.
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            346666554433335556779999999999999999999888877778875 3 45577788888888777666776665


Q ss_pred             E
Q psy7717         106 Y  106 (113)
Q Consensus       106 Y  106 (113)
                      .
T Consensus        81 l   81 (162)
T PF13019_consen   81 L   81 (162)
T ss_pred             E
Confidence            4

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=91.74  E-value=2.2  Score=27.88  Aligned_cols=63  Identities=19%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCC
Q psy7717          36 GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATN   99 (113)
Q Consensus        36 ~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdD   99 (113)
                      +.=|.+--+.+-||++..|..++++--...++++..+.-+ -|+-.-..|.+|.|+++-+|+.+
T Consensus        10 tsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiI-tndG~GInP~QTag~vflKhGse   72 (76)
T PF03671_consen   10 TSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAII-TNDGVGINPQQTAGNVFLKHGSE   72 (76)
T ss_dssp             STSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEE-ESSS-EE-TTSBHHHHHHHT-SE
T ss_pred             ccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEE-ecCCcccccchhhhhhHhhcCcE
Confidence            4557778899999999999999999999999999888433 33334567789999999999864

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>KOG2660|consensus

Probab=87.04  E-value=1.2  Score=36.42  Aligned_cols=73  Identities=14%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             CCCCCcccceEE-ecCCccHHhHHHHHHhhhC-CCCCCeEEEEEcCccCCCccchHHHHHHhcCC---CCEEEEEEcccc
Q psy7717          36 GDAPILTKKKWL-VHVDQNVASIISFTKKSIK-MDPSESLFIYVNQSFAPSPDTTIRALYDSFAT---NGSLVLNYCKTQ  110 (113)
Q Consensus        36 ~~~P~L~k~Kfl-V~~~~tv~~~~~~lrk~L~-l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd---DGfLyi~Ys~~~  110 (113)
                      +..+.|. ++|+ +++..|+.++..|+++++. ++.--.+=+++|+-. -.-+.|+.++..-+..   ||-|.+.|...+
T Consensus       158 ~~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~-l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p  235 (331)
T KOG2660|consen  158 DTLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEEL-LGDYYTLKDIAYAYRWRSRDPPLPLRYRVKP  235 (331)
T ss_pred             ccccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCcc-ccchhhhhhhhhhhcccccCCcceeEecccc
Confidence            3455555 4555 8888999999999999998 666666778888754 6678999999888876   999999998543

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=86.30  E-value=2.6  Score=27.83  Aligned_cols=51  Identities=10%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             EecCCccHHhHHHHHHhhhCCCCCCeEEEEEc----CccCCCccchHHHHHHhcCC
Q psy7717          47 LVHVDQNVASIISFTKKSIKMDPSESLFIYVN----QSFAPSPDTTIRALYDSFAT   98 (113)
Q Consensus        47 lV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVn----n~~~P~~d~t~~~LY~~~kd   98 (113)
                      -||.+.+++++..-|++||++++ +.+.|.-.    +.+.|-.|+.|.+.+.+=++
T Consensus        16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~~   70 (80)
T cd06406          16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAKD   70 (80)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhcC
Confidence            57899999999999999999984 55666543    24456678888888876543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd00196 UBQ Ubiquitin-like proteins

Probab=85.79  E-value=3.9  Score=22.01  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=33.6

Q ss_pred             cccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCc
Q psy7717          41 LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSP   85 (113)
Q Consensus        41 L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~   85 (113)
                      -....+.++.+.|++++...|..+.+.. .+...|++++...+..
T Consensus         7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~~~~~~   50 (69)
T cd00196           7 GKTVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGKILPDS   50 (69)
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCeECCCC
Confidence            4556678888999999999999998854 4567777888665543

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=85.34  E-value=6.1  Score=25.59  Aligned_cols=63  Identities=6%  Similarity=0.062  Sum_probs=47.5

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      .+.+|.|.|...    .-+...|.|..+.+++.++..+..+.++++++--|+|=+..  -..+.|++++
T Consensus         8 ~~~~i~I~v~~~----~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~--L~~~~T~~~l   70 (87)
T cd01763           8 ISEHINLKVKGQ----DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQR--IRDNQTPDDL   70 (87)
T ss_pred             CCCeEEEEEECC----CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeE--CCCCCCHHHc
Confidence            457888888543    22456799999999999999999999999876666665444  3446777776

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=82.51  E-value=1.8  Score=26.16  Aligned_cols=47  Identities=17%  Similarity=0.124  Sum_probs=37.3

Q ss_pred             ceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          44 KKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        44 ~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      -.+.|+.+.||+++-..|..+.+++++ .+-|+.++..+ ..+.+++++
T Consensus         8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~-~~~L~~~G~~L-~d~~tL~~~   54 (69)
T PF00240_consen    8 FTLEVDPDDTVADLKQKIAEETGIPPE-QQRLIYNGKEL-DDDKTLSDY   54 (69)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSTGG-GEEEEETTEEE-STTSBTGGG
T ss_pred             EEEEECCCCCHHHhhhhcccccccccc-cceeeeeeecc-cCcCcHHHc
Confidence            346799999999999999999998775 45666688775 667788764

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG1209|consensus

Probab=80.83  E-value=3.5  Score=32.76  Aligned_cols=57  Identities=25%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             cccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCc----cCCCccchHHHHHHhcCCCCE
Q psy7717          41 LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQS----FAPSPDTTIRALYDSFATNGS  101 (113)
Q Consensus        41 L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~----~~P~~d~t~~~LY~~~kdDGf  101 (113)
                      |+..|.-|.++..|.++..++|+-    +..+|-+++||.    ..|..|.+++++=++|+.+=|
T Consensus        54 l~~~kLDV~~~~~V~~v~~evr~~----~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvf  114 (289)
T KOG1209|consen   54 LKPYKLDVSKPEEVVTVSGEVRAN----PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVF  114 (289)
T ss_pred             CeeEEeccCChHHHHHHHHHHhhC----CCCceEEEEcCCCCCcccccccCCHHHHHhhhcccee
Confidence            677888899999999999999985    446888999983    458999999999999997433

>KOG2976|consensus

Probab=80.57  E-value=9.9  Score=30.41  Aligned_cols=80  Identities=13%  Similarity=0.249  Sum_probs=48.7

Q ss_pred             CCCeeEEEEEe--cCCCCCcccce---EEecCCccHHhHHHHHHhhhC--------CCCCCeEEEEEcCccCCCccchHH
Q psy7717          24 AKVKVPILLRA--TGDAPILTKKK---WLVHVDQNVASIISFTKKSIK--------MDPSESLFIYVNQSFAPSPDTTIR   90 (113)
Q Consensus        24 ~p~kVpVi~e~--~~~~P~L~k~K---flV~~~~tv~~~~~~lrk~L~--------l~~~~sLFlyVnn~~~P~~d~t~~   90 (113)
                      .+.+||+++.-  ...+...++.-   +.-.++-+.+.+=.+|.+++.        ...++.  +.|.+ +-+...+.+.
T Consensus       180 ~~r~IPL~iy~sq~~t~r~f~~~~~~P~~~~~d~~~stlge~l~d~~~~s~~s~d~~~~~~~--viihG-Iei~l~tpL~  256 (278)
T KOG2976|consen  180 RSRHIPLRIYTSQVKTARDFRTSLTFPCISQPDGSLSTLGEFLKDRLPDSLDSKDDINGNDP--VIIHG-IEIPLHTPLY  256 (278)
T ss_pred             ccccceeEeeccccccccchhhccccceeecCchhhhhhhHHHHhhcccccCccccccccCc--eEEec-ccccccchHH
Confidence            56778888871  11111111100   122234555566667777764        222233  55666 5688899999


Q ss_pred             HHHHhcCC-CCEEEEEE
Q psy7717          91 ALYDSFAT-NGSLVLNY  106 (113)
Q Consensus        91 ~LY~~~kd-DGfLyi~Y  106 (113)
                      .||++..- ||||||+.
T Consensus       257 ~l~~~L~ypD~FLHI~l  273 (278)
T KOG2976|consen  257 WLYSNLSYPDGFLHIVL  273 (278)
T ss_pred             HHHhhccCCCcceEEEE
Confidence            99999999 99999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
4gdk_A	91	Crystal Structure Of Human Atg12~atg5 Conjugate In		9e-26
1wz3_A	96	The Crystal Structure Of Plant Atg12 Length = 96		2e-16
3w1s_C	91	Crystal Structure Of Saccharomyces Cerevisiae Atg12		1e-09
3rui_B	118	Crystal Structure Of Atg7c-Atg8 Complex Length = 11		1e-05
2zpn_A	119	The Crystal Structure Of Saccharomyces Cerevisiae A		1e-05
2kq7_A	119	Solution Structure Of The Autophagy-Related Protein		1e-05
3eci_A	122	Microtubule-Associated Protein 1 Light Chain 3 Alph		1e-05
3vh3_B	119	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		6e-05
2kwc_A	116	The Nmr Structure Of The Autophagy-Related Protein		6e-05
2li5_A	117	Nmr Structure Of Atg8-Atg7c30 Complex Length = 117		6e-05
2l8j_A	119	Gabarapl-1 Nbr1-Lir Complex Structure Length = 119		3e-04
2r2q_A	110	Crystal Structure Of Human Gamma-Aminobutyric Acid		3e-04
1eo6_A	117	Crystal Structure Of Gate-16 Length = 117		6e-04

>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex With An N- Terminal Fragment Of Atg16l1 Length = 91

Iteration: 1
 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 64/90 (71%)
Query: 24  AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAP 83
           +K K+ ILL+A GD PI+  KKW V   + +  +I F KK +K+  SE LFIYVNQSFAP
Sbjct: 2   SKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAP 61
Query: 84  SPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           SPD  +  LY+ F ++G LVL+YCK+QAWG
Sbjct: 62  SPDQEVGTLYECFGSDGKLVLHYCKSQAWG 91

>pdb|1WZ3|A Chain A, The Crystal Structure Of Plant Atg12 Length = 96

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 27  KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
           K+ + LRATG APIL + K+ V      A++I F ++ +    S+SLF+YVN +F+P+PD
Sbjct: 13  KIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPD 69
Query: 87  TTIRALYDSFATNGSLVLNYCKTQAWG 113
            ++  LY++F  +G LV+NY  + AWG
Sbjct: 70  ESVIDLYNNFGFDGKLVVNYACSMAWG 96

>pdb|3W1S|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Atg12-Atg5 Conjugate Bound To The N-Terminal Domain Of Atg16 Length = 91

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 21  GAEAKV-KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQ 79
           GA   + K+ I  +  G    L      + + Q+ A +I F K+ +KMD    ++ Y+N 
Sbjct: 1   GAHMNIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMD---HVYCYINN 57
Query: 80  SFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           SFAPSP   I  L+  F TN  L+++YC + A+G
Sbjct: 58  SFAPSPQQNIGELWMQFKTNDELIVSYCASVAFG 91

>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 11  EGSAPSSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMD 68
           E     S  I    K ++P++       D P + K+K+LV  D  V   +   +K I + 
Sbjct: 14  EKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP 73
Query: 69  PSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
           P +++FI+VN +  P+    + A+Y      +G L + Y     +G
Sbjct: 74  PEKAIFIFVNDTLPPTA-ALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 11  EGSAPSSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMD 68
           E     S  I    K ++P++       D P + K+K+LV  D  V   +   +K I + 
Sbjct: 15  EKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP 74
Query: 69  PSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
           P +++FI+VN +  P+    + A+Y      +G L + Y     +G
Sbjct: 75  PEKAIFIFVNDTLPPTA-ALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 11  EGSAPSSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMD 68
           E     S  I    K ++P++       D P + K+K+LV  D  V   +   +K I + 
Sbjct: 14  EKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP 73
Query: 69  PSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
           P +++FI+VN +  P+    + A+Y      +G L + Y     +G
Sbjct: 74  PEKAIFIFVNDTLPPTA-ALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 27  KVPILL-RATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAP 83
           K+P+++ R  G+   P+L K K+LV    N++ ++   ++ ++++P+++ F+ VNQ    
Sbjct: 31  KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMV 90
Query: 84  SPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
           S  T I  +Y+     +G L + Y   + +G
Sbjct: 91  SVSTPIADIYEQEKDEDGFLYMVYASQETFG 121

>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 27  KVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           ++P++       D P + K+K+LV  D  V   +   +K I + P +++FI+VN +  P+
Sbjct: 31  RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 90
Query: 85  PDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
               + A+Y      +G L + Y     +G
Sbjct: 91  A-ALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 27  KVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           ++P++       D P + K+K+LV  D  V   +   +K I + P +++FI+VN +  P+
Sbjct: 28  RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 87
Query: 85  PDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
               + A+Y      +G L + Y     +G
Sbjct: 88  A-ALMSAIYQEHKDKDGFLYVTYSGENTFG 116

>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 27  KVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           ++P++       D P + K+K+LV  D  V   +   +K I + P +++FI+VN +  P+
Sbjct: 29  RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 88
Query: 85  PDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
               + A+Y      +G L + Y     +G
Sbjct: 89  A-ALMSAIYQEHKDKDGFLYVTYSGENTFG 117

>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 27  KVPILLRATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           +VP+++     A  P L K+K+LV  D  V       +K I + P ++LF +VN +  P+
Sbjct: 32  RVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPT 91
Query: 85  PDTTIRALYDSFATNGSLVLNYC 107
             T  +   D+   +  L + Y 
Sbjct: 92  SATMGQLYEDNHEEDYFLYVAYS 114

>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 27  KVPILLRATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           +VP+++     A  P L K+K+LV  D  V       +K I + P ++LF +VN +  P+
Sbjct: 27  RVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPT 86
Query: 85  PDTTIRALYDSFATNGSLVLNYC 107
             T  +   D+   +  L + Y 
Sbjct: 87  SATMGQLYEDNHEEDYFLYVAYS 109

>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 7   DNTPEGSAPSSPSIGAEAKVKVPILLRATGDAPI--LTKKKWLVHVDQNVASIISFTKKS 64
           D++ E     S  I A+   +VP+++     + I  + K+K+LV  D  VA  +   +K 
Sbjct: 8   DHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKR 67
Query: 65  IKMDPSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
           I++   +++F++V+++  P    T+  LY+     +G L + Y     +G
Sbjct: 68  IQLPSEKAIFLFVDKT-VPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	3e-32
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	4e-15
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	4e-08
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	4e-08
3rui_B	118	Autophagy-related protein 8; autophagosome formati	6e-08
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	1e-07
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	2e-06

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Length = 96

 Score =  108 bits (270), Expect = 3e-32
 Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 16  SSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFI 75
              +    +  K+ + LRATG APIL + K+ V      A++I F ++ +    S+SLF+
Sbjct: 2   PMATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFV 58

Query: 76  YVNQSFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
           YVN +F+P+PD ++  LY++F  +G LV+NY  + AWG
Sbjct: 59  YVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score = 65.1 bits (158), Expect = 4e-15
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 35  TGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD 94
               P+L K K+LV    N++ +I   ++ ++++ +++ F+ VN     S  T I  +Y+
Sbjct: 46  EKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYE 105

Query: 95  SFATN-GSLVLNYCKTQAWG 113
           S     G L + Y   + +G
Sbjct: 106 SEKDEDGFLYMVYASQETFG 125

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110

 Score = 46.9 bits (111), Expect = 4e-08
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 37 DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSF 96
            P L K+K+LV  D  V       +K I + P ++LF +VN +  P    T+  LY+  
Sbjct: 39 RVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTI-PPTSATMGQLYEDN 97

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117

 Score = 46.9 bits (111), Expect = 4e-08
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 37  DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSF 96
               + K+K+LV  D  VA  +   +K I++   +++F++V+++  P    T+  LY+  
Sbjct: 40  QIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTV-PQSSLTMGQLYEKE 98

Query: 97  ATN-GSLVLNYCKTQAWG 113
               G L + Y     +G
Sbjct: 99  KDEDGFLYVAYSGENTFG 116

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118

 Score = 46.5 bits (110), Expect = 6e-08
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 37  DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSF 96
           D P + K+K+LV  D  V   +   +K I + P +++FI+VN +  P     + A+Y   
Sbjct: 42  DIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL-PPTAALMSAIYQEH 100

Query: 97  A-TNGSLVLNYCKTQAWG 113
              +G L + Y     +G
Sbjct: 101 KDKDGFLYVTYSGENTFG 118

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125

 Score = 45.8 bits (108), Expect = 1e-07
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 37  DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSF 96
               L KKK+LV  D  V       +K I + P ++LF +VN    P    T+ +LY   
Sbjct: 48  RLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVI-PPTSATMGSLYQEH 106

Query: 97  A-TNGSLVLNYCKTQAWG 113
              +  L + +     +G
Sbjct: 107 HDEDFFLYIAFSDENVYG 124

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 37  DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSF 96
           D   L + K+LV  D  V   +S  +K ++++   +LF+Y N +        +  +Y  +
Sbjct: 43  DIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTV-LPSSAQMADIYSKY 101

Query: 97  ATN-GSLVLNYCKTQAWG 113
               G L + Y     +G
Sbjct: 102 KDEDGFLYMKYSGEATFG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	100.0
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	100.0
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	100.0
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	100.0
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	100.0
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	100.0
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	94.97
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	94.77
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	93.84
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	92.9
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	91.86
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	91.27
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	90.13
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	89.48
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	89.16
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	87.47
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	86.47
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	85.95
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	85.62
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	85.26
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	84.37
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	82.87
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	82.14
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	80.21
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	80.05

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=3.4e-41  Score=236.03  Aligned_cols=96  Identities=21%  Similarity=0.482  Sum_probs=90.9

Q ss_pred             CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      +..||++||+|||||||+.  +++|.|+++||+||.++||++|+.+||++|+|+++++|||||||+ +|++|++||+||+
T Consensus        21 ~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~-~p~~~~~m~~lY~   99 (119)
T 3h9d_A           21 AAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT-VLPSSAQMADIYS   99 (119)
T ss_dssp             HHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE-ECCTTSBHHHHHH
T ss_pred             HHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc-CCCccchHHHHHH
Confidence            5679999999999999986  579999999999999999999999999999999999999999998 7999999999999


Q ss_pred             hcCC-CCEEEEEEccccccC
Q psy7717          95 SFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~~~afG  113 (113)
                      +|+| ||||||+||+++|||
T Consensus       100 ~~kd~DGfLyv~Ys~e~~fG  119 (119)
T 3h9d_A          100 KYKDEDGFLYMKYSGEATFG  119 (119)
T ss_dssp             HHCCTTSCEEEEEECC-CC-
T ss_pred             HcCCCCCeEEEEEecccccC
Confidence            9999 999999999999999

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=4.9e-41  Score=234.91  Aligned_cols=96  Identities=27%  Similarity=0.559  Sum_probs=92.5

Q ss_pred             CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      +..||+|||+|||||||+.  +++|.|+++||+||.++||++|+.+||++|+|+++++||||||| ++|++|++||+||+
T Consensus        20 ~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~-~~p~~~~~m~~lY~   98 (118)
T 3rui_B           20 SERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND-TLPPTAALMSAIYQ   98 (118)
T ss_dssp             HHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT-BCCCTTSBHHHHHH
T ss_pred             HHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC-ccCCccchHHHHHH
Confidence            5679999999999999987  57999999999999999999999999999999999999999999 58999999999999


Q ss_pred             hcCC-CCEEEEEEccccccC
Q psy7717          95 SFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~~~afG  113 (113)
                      +||| ||||||+||+++|||
T Consensus        99 ~~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B           99 EHKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             HHCCTTSCEEEEEEECCCBC
T ss_pred             HcCCCCCeEEEEEeccccCC
Confidence            9999 999999999999999

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=4.9e-41  Score=236.98  Aligned_cols=96  Identities=25%  Similarity=0.469  Sum_probs=91.6

Q ss_pred             CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      +..||+|||+|||||||+.  +++|.|+|+||+||+++||++|+.+||++|+|+++++||||||| ++|++|++||+||+
T Consensus        26 ~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn-~lPs~s~~m~~lY~  104 (125)
T 3m95_A           26 GEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQ  104 (125)
T ss_dssp             HHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT-BCCCTTSBHHHHHH
T ss_pred             HHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECC-ccCCccchHHHHHH
Confidence            5679999999999999986  57999999999999999999999999999999999999999998 58999999999999


Q ss_pred             hcCC-CCEEEEEEccccccC
Q psy7717          95 SFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~~~afG  113 (113)
                      +|+| ||||||+||+++|||
T Consensus       105 ~~kdeDGfLY~~Ys~e~tfG  124 (125)
T 3m95_A          105 EHHDEDFFLYIAFSDENVYG  124 (125)
T ss_dssp             HHCCTTSCEEEEEESSSCC-
T ss_pred             HcCCCCCeEEEEecCccccC
Confidence            9998 999999999999999

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=100.00  E-value=1.4e-38  Score=213.69  Aligned_cols=88  Identities=55%  Similarity=1.012  Sum_probs=87.0

Q ss_pred             CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEE
Q psy7717          26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLN  105 (113)
Q Consensus        26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~  105 (113)
                      .||.|+++++|++|.|+++||+||+++||++|+.+|||||+++++++|||||||+|+|++|++||+||++|++||||||+
T Consensus         4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~   83 (91)
T 4gdk_A            4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLH   83 (91)
T ss_dssp             CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEE
T ss_pred             ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccccccC
Q psy7717         106 YCKTQAWG  113 (113)
Q Consensus       106 Ys~~~afG  113 (113)
                      ||+++|||
T Consensus        84 Ys~~~afG   91 (91)
T 4gdk_A           84 YCKSQAWG   91 (91)
T ss_dssp             EESSCCCC
T ss_pred             EeCccccC
Confidence            99999999

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=100.00  E-value=5.5e-39  Score=223.99  Aligned_cols=96  Identities=25%  Similarity=0.500  Sum_probs=92.2

Q ss_pred             CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      +..||++||+|||||||+.  +++|.|+++||+||.++||++|+.+||++|+++++++||||||+. +|++|++|++||+
T Consensus        18 ~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~   96 (117)
T 1eo6_A           18 SAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT-VPQSSLTMGQLYE   96 (117)
T ss_dssp             HHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB-CCCTTSBHHHHHH
T ss_pred             HHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCE-ecCccchHHHHHH
Confidence            5678999999999999987  469999999999999999999999999999999999999999997 6999999999999


Q ss_pred             hcCC-CCEEEEEEccccccC
Q psy7717          95 SFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~~~afG  113 (113)
                      +|+| ||||||+||+++|||
T Consensus        97 ~~kd~DGfLyi~Ys~~~~fG  116 (117)
T 1eo6_A           97 KEKDEDGFLYVAYSGENTFG  116 (117)
T ss_dssp             HHCCTTSCEEEEEECCCCCC
T ss_pred             HhCCCCCEEEEEEeCCccCC
Confidence            9999 999999999999999

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=100.00  E-value=3.3e-39  Score=228.94  Aligned_cols=96  Identities=23%  Similarity=0.472  Sum_probs=92.1

Q ss_pred             CccccccCCCeeEEEEEec--CC-CCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEE-EEcCccCCCccchHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT--GD-APILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFI-YVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~--~~-~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFl-yVnn~~~P~~d~t~~~L   92 (113)
                      +..||++||+|||||||+.  ++ +|.|+|+||+||.++||++|+.+||++|+++++++||| |||++ +|++|++||+|
T Consensus        25 ~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~-~p~~~~~m~~l  103 (130)
T 2zjd_A           25 VRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHS-MVSVSTPISEV  103 (130)
T ss_dssp             HHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTE-ECCTTSBHHHH
T ss_pred             HHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCc-cCCccchHHHH
Confidence            5679999999999999987  45 99999999999999999999999999999999999999 99998 69999999999


Q ss_pred             HHhcCC-CCEEEEEEccccccC
Q psy7717          93 YDSFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        93 Y~~~kd-DGfLyi~Ys~~~afG  113 (113)
                      |++|+| ||||||+||+++|||
T Consensus       104 Y~~~kdeDGfLyv~Ys~e~tfG  125 (130)
T 2zjd_A          104 YESEKDEDGFLYMVYASQETFG  125 (130)
T ss_dssp             HHHHCCTTSCEEEEEEEHHHHH
T ss_pred             HHHhCCCCCEEEEEEeCCcccC
Confidence            999999 999999999999998

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=100.00  E-value=1.6e-37  Score=208.63  Aligned_cols=87  Identities=33%  Similarity=0.622  Sum_probs=74.6

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEE
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLV  103 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLy  103 (113)
                      .++||.|+++++|++|+|+++||+||+++||++|+.+|||||++   ++|||||||+|+|++|++||+||++|++|||||
T Consensus         5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Ly   81 (91)
T 3w1s_C            5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFKTNDELI   81 (91)
T ss_dssp             -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEE
T ss_pred             CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhCCCCEEE
Confidence            46899999999999999999999999999999999999999999   699999999999999999999999999999999


Q ss_pred             EEEccccccC
Q psy7717         104 LNYCKTQAWG  113 (113)
Q Consensus       104 i~Ys~~~afG  113 (113)
                      |+||.++|||
T Consensus        82 v~Ys~~~afG   91 (91)
T 3w1s_C           82 VSYCASVAFG   91 (91)
T ss_dssp             EEEEC---CC
T ss_pred             EEEeCccccC
Confidence            9999999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=100.00  E-value=2.1e-37  Score=209.75  Aligned_cols=87  Identities=43%  Similarity=0.820  Sum_probs=83.1

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEE
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLV  103 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLy  103 (113)
                      .|+||+|++++++++|.|+++||+|++++||++|+.+|||||+++   +|||||||+|+|++|++|++||++|+||||||
T Consensus        10 ~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLy   86 (96)
T 1wz3_A           10 SVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLV   86 (96)
T ss_dssp             --CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEE
T ss_pred             CCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCCCCEEE
Confidence            378999999999999999999999999999999999999999998   99999999999999999999999999999999


Q ss_pred             EEEccccccC
Q psy7717         104 LNYCKTQAWG  113 (113)
Q Consensus       104 i~Ys~~~afG  113 (113)
                      |+||+++|||
T Consensus        87 i~Ys~~~afG   96 (96)
T 1wz3_A           87 VNYACSMAWG   96 (96)
T ss_dssp             EEEESCSCC-
T ss_pred             EEEeCCcccC
Confidence            9999999999

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=100.00  E-value=1.1e-35  Score=205.18  Aligned_cols=91  Identities=26%  Similarity=0.490  Sum_probs=86.8

Q ss_pred             CccccccCCCeeEEEEEecC--CCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRATG--DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~~--~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      +..||++||+|||||||+.+  ++|.|+++||+||.++||++|+.+||++|+++++++|||||||. +|++|++|++||+
T Consensus        17 ~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~   95 (110)
T 2r2q_A           17 GEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNT-IPPTSATMGQLYE   95 (110)
T ss_dssp             HHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB-CCCTTSBHHHHHH
T ss_pred             HHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCE-ecCccChHHHHHH
Confidence            56789999999999999974  79999999999999999999999999999999999999999997 6999999999999


Q ss_pred             hcCC-CCEEEEEEcc
Q psy7717          95 SFAT-NGSLVLNYCK  108 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~  108 (113)
                      +|+| ||||||+||+
T Consensus        96 ~~kd~DGfLyi~Ys~  110 (110)
T 2r2q_A           96 DNHEEDYFLYVAYSD  110 (110)
T ss_dssp             HHCCTTSCEEEEEEC
T ss_pred             HcCCCCCEEEEEEeC
Confidence            9999 9999999985

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=94.97  E-value=0.012  Score=45.67  Aligned_cols=73  Identities=21%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEec---CCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC-C
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVH---VDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-N   99 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~---~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-D   99 (113)
                      ....|||++--.+. |.++.   +|+   ...|+++++.   ..+.- ......+++++. .+++++.|.+||+++.- |
T Consensus       196 ~~r~IPiRIy~~~~-~~iQ~---~i~~~~~~~TLg~~L~---~~lp~-l~~~~~~iihGi-~vp~~~pl~~l~~~~~y~D  266 (274)
T 3vqi_A          196 KAKSLPVRVWTSNY-AVLQP---TVPVTDKELSVAELLD---SIKLS-SDGVKSVIIQGI-DVSIEDNIFELYDIFASID  266 (274)
T ss_dssp             GCSBCCEEEECTTS-CEECC---CCBCC---CBHHHHHH---TTTCC-C--CCEEEETTE-EEETTSBHHHHHHHHCCTT
T ss_pred             cccceeEEEEcCCC-CeEec---ccCCCCccccHHHHHH---Hhccc-cccceEEEEeCc-cCCCCCcHHHHHHHccCCC
Confidence            46789999985432 32221   233   3567766655   33321 112344778884 57889999999999999 9


Q ss_pred             CEEEEE
Q psy7717         100 GSLVLN  105 (113)
Q Consensus       100 GfLyi~  105 (113)
                      |||||.
T Consensus       267 gFLhiv  272 (274)
T 3vqi_A          267 GFLYLV  272 (274)
T ss_dssp             SCEEEE
T ss_pred             ceEEEE
Confidence            999985

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=94.77  E-value=0.015  Score=45.55  Aligned_cols=81  Identities=9%  Similarity=0.163  Sum_probs=48.0

Q ss_pred             CCeeEEEEEecCCCCCcccceEEecC---CccHHhHHHHHHhhhC-CCCCCeEEEEEcCccCCCccchHHHHHHhcCC-C
Q psy7717          25 KVKVPILLRATGDAPILTKKKWLVHV---DQNVASIISFTKKSIK-MDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-N   99 (113)
Q Consensus        25 p~kVpVi~e~~~~~P~L~k~KflV~~---~~tv~~~~~~lrk~L~-l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-D   99 (113)
                      +.+|||++--.+..+.++--.=.++.   ..|+++++.- +..+. +-+..+..+++++. .+++++.+.+||++++- |
T Consensus       200 ~r~IPvRIy~~~~~~~~~~iqp~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI-~vpl~~pl~wl~~~l~~pD  277 (297)
T 2dyo_A          200 PRHIPLIIQTSRTSGTFRISQPTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI-EIPWHMLLYDLYSKLRSFD  277 (297)
T ss_dssp             CSBCCEEEECCSSSSSCCEECCCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE-EECTTCBHHHHHHHHCCTT
T ss_pred             cceeeEEEEecCCCCceeeeecccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc-cCCCCCcHHHHHHHhcCCC
Confidence            68999999854332222100011111   1266665410 22222 22334468889985 57799999999999999 9


Q ss_pred             CEEEEEEc
Q psy7717         100 GSLVLNYC  107 (113)
Q Consensus       100 GfLyi~Ys  107 (113)
                      |||||.-.
T Consensus       278 gFLhIvv~  285 (297)
T 2dyo_A          278 GFLYITLV  285 (297)
T ss_dssp             SCEEEEEE
T ss_pred             cEEEEEEE
Confidence            99999765

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=93.84  E-value=0.67  Score=30.95  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             ccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          22 AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        22 ~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      +..+++|.|.|....+-    ...|.|.++.+++.++...+++.++++++--|+|=+..+  .+++|.++|
T Consensus        21 ~~~~~~I~IkVk~~~g~----~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L--~~~~Tp~dl   85 (110)
T 2k8h_A           21 KEETALVAVKVVNADGA----EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPI--DETKTPEEL   85 (110)
T ss_dssp             CCCCCCEEEEEEETTSC----CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBC--CSSSHHHHH
T ss_pred             CCCCCeEEEEEECCCCC----EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc--CCCCCHHHc
Confidence            44567899999864332    347999999999999999999999998876777755543  457899888

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=92.90  E-value=0.1  Score=33.70  Aligned_cols=48  Identities=15%  Similarity=0.245  Sum_probs=39.3

Q ss_pred             cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717          43 KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA   91 (113)
Q Consensus        43 k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~   91 (113)
                      .-+|.|+.+.+|++++..-|++-+++++.++.|..++.- -.+++++.+
T Consensus        21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdR-Ldp~~tp~D   68 (82)
T 3goe_A           21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEW-LDPNDQVQS   68 (82)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEE-CCTTSBGGG
T ss_pred             CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcc-cCccCChhh
Confidence            457999999999999999999999999999999988864 333444443

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=91.86  E-value=0.89  Score=28.12  Aligned_cols=63  Identities=8%  Similarity=0.106  Sum_probs=47.1

Q ss_pred             CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      +++|.|.|....+-   ....|.|.++.+++.++...+++.++++++--|+|=+..  ..+++|.++|
T Consensus         5 ~~~i~ikV~~~~g~---~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~--l~~~~Tp~~l   67 (79)
T 3a4r_A            5 SQELRLRVQGKEKH---QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTK--LSGKELPADL   67 (79)
T ss_dssp             CCCEEEEEECSSTT---CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEE--CCSCCCHHHH
T ss_pred             CCEEEEEEEeCCCC---EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE--cCCCCCHHHc
Confidence            46788888753221   135789999999999999999999999887666664444  3557888887

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=91.27  E-value=0.3  Score=37.67  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             CeeEEEEEec-CCCCCcccceEEe---cCCccHHhHHHHHHhhh-CCC-CCCeEEEEEcCccCCCccchHHHHHHhcCC-
Q psy7717          26 VKVPILLRAT-GDAPILTKKKWLV---HVDQNVASIISFTKKSI-KMD-PSESLFIYVNQSFAPSPDTTIRALYDSFAT-   98 (113)
Q Consensus        26 ~kVpVi~e~~-~~~P~L~k~KflV---~~~~tv~~~~~~lrk~L-~l~-~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-   98 (113)
                      .+|||++--. .+-|.++.-.=-+   ....|+++++..+=-.+ .-+ ......+++++ +.+++++.+.+||++++- 
T Consensus       183 r~IPvRiY~~~~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~~~~viihG-I~~pl~~pl~~l~~~l~y~  261 (275)
T 4gdk_B          183 RYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMIHG-IEPMLETPLQWLSEHLSYP  261 (275)
T ss_dssp             SSCCEEEECTTSSSSEECCCCCSBCTTSCBCBHHHHHHHHCGGGCC------CEEEEBTT-BCCCTTSBHHHHHHHSCCT
T ss_pred             ccceEEEEecCCCCCccccCcCCcCCCCCcccHHHHHHHhcccccCCCcccccceEEEeC-CcCCCCCCHHHHHHhccCC
Confidence            6799999843 2333333210001   12347777765532111 101 11345667777 458899999999999999 


Q ss_pred             CCEEEEEEcc
Q psy7717          99 NGSLVLNYCK  108 (113)
Q Consensus        99 DGfLyi~Ys~  108 (113)
                      ||||||.-+.
T Consensus       262 DgFLhI~v~~  271 (275)
T 4gdk_B          262 DNFLHISIIP  271 (275)
T ss_dssp             TSCEEEEEEE
T ss_pred             CceEEEEEEe
Confidence            9999997653

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=90.13  E-value=1.8  Score=28.24  Aligned_cols=67  Identities=9%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             cccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          21 GAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        21 ~~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      ..+.+++|.|.|....+-   ....|.|.++.++..++..-+++.+++.+.--|+| ++.- ..+++|.++|
T Consensus        19 ~~~~~~~I~LkV~~~dg~---~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~r-I~~~~TP~dL   85 (97)
T 2jxx_A           19 STETSQQLQLRVQGKEKH---QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTK-LSGRELPADL   85 (97)
T ss_dssp             -CCSCSEEEEEEEESSSS---CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEE-CCSCSCHHHH
T ss_pred             CCCCCCeEEEEEEcCCCC---EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEE-cCCCCCHHHc
Confidence            345678899988764321   24569999999999999999999999988655665 5432 4557888887

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=89.48  E-value=0.62  Score=29.90  Aligned_cols=62  Identities=6%  Similarity=0.100  Sum_probs=45.4

Q ss_pred             CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      +++|.|.|....+    +.-.|.|.++.+++.++...+++.++++++--|+|=+..+  .+++|.++|
T Consensus         3 ~~~i~ikVk~~~g----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l--~~~~Tp~dl   64 (91)
T 2io0_B            3 NDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL   64 (91)
T ss_dssp             -CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC--CTTCCTTTT
T ss_pred             CCeEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc--CCCCCHHHc
Confidence            4678888875322    3457999999999999999999999998766666644443  446677665

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=89.16  E-value=1.3  Score=28.13  Aligned_cols=77  Identities=5%  Similarity=0.072  Sum_probs=52.3

Q ss_pred             cCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEE
Q psy7717          23 EAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSL  102 (113)
Q Consensus        23 k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfL  102 (113)
                      ..+..+.|.|+...+    +...+.|..+.||+.+...+..+.++++++--++| ++..+ ..+.|++++  .-+++..|
T Consensus        17 ~~~~~m~I~Vk~~~g----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L-~d~~tl~dy--~i~~g~~I   88 (97)
T 1wyw_B           17 KEGEYIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRI-ADNHTPKEL--GMEEEDVI   88 (97)
T ss_dssp             --CCEEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEEC-CTTCCHHHH--TCCTTCEE
T ss_pred             CCCCcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEc-CCCCCHHHC--CCCCCCEE
Confidence            355678888875432    23457899999999999999999999887555444 55543 456788764  12235577


Q ss_pred             EEEEc
Q psy7717         103 VLNYC  107 (113)
Q Consensus       103 yi~Ys  107 (113)
                      ++...
T Consensus        89 ~l~~~   93 (97)
T 1wyw_B           89 EVYQE   93 (97)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            77654

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=87.47  E-value=1.9  Score=28.28  Aligned_cols=63  Identities=6%  Similarity=0.097  Sum_probs=47.4

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      .+++|.|.|....+    +...|.|.++.++..++....++.++++++--|+|=+..+  .+++|.++|
T Consensus        21 ~~~~I~IkVk~~~g----~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l--~~~~Tp~dl   83 (104)
T 1wz0_A           21 NNDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL   83 (104)
T ss_dssp             CSCCEEEEEECSSS----CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC--CTTSCTTTT
T ss_pred             CCCeEEEEEECCCC----CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc--CCCCCHHHc
Confidence            45788888875322    3457999999999999999999999998866676655543  345676655

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=86.47  E-value=0.84  Score=29.37  Aligned_cols=62  Identities=6%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      +++|.|.|+...+    +...|.|.++.+++.++...+++.++++++--|+|=+..+  .+++|.+++
T Consensus         5 ~~~i~ikVk~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l--~~~~Tp~dl   66 (94)
T 2io1_B            5 NDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL   66 (94)
T ss_dssp             -CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCTTTT
T ss_pred             CCeEEEEEECCCC----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc--CCCCCHHHc
Confidence            4678888875322    3457899999999999999999999998765666544443  446677665

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=85.95  E-value=5.5  Score=26.07  Aligned_cols=74  Identities=8%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCE
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGS  101 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGf  101 (113)
                      -..++.|.|+...+    ++..+.|.++.||++|...|..+-++++++- -|..+++.+ ..+.++++    |+.  +..
T Consensus        25 ~~~mm~I~VKtl~G----k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L-~D~~TL~d----ygI~~gst   94 (100)
T 1uh6_A           25 AATMIEVVCNDRLG----KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIF-KDHVSLGD----YEIHDGMN   94 (100)
T ss_dssp             CCCEEEEEEECSSS----SCEEEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEEC-CSSCBHHH----HTCCTTEE
T ss_pred             CCCeEEEEEECCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEEC-CCCCCHHH----cCCCCCCE
Confidence            34568888886532    3344789999999999999999999987643 334456654 45668776    343  557


Q ss_pred             EEEEEc
Q psy7717         102 LVLNYC  107 (113)
Q Consensus       102 Lyi~Ys  107 (113)
                      |.|.|.
T Consensus        95 lhL~~~  100 (100)
T 1uh6_A           95 LELYYQ  100 (100)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            888883

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=85.62  E-value=1.8  Score=28.62  Aligned_cols=62  Identities=11%  Similarity=0.181  Sum_probs=46.7

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      .+++|.|.|.. .+    +...|.|.++.++..++...+++.++++++--|+|-+..+  ..++|.++|
T Consensus        28 ~~~~I~IkV~~-~g----~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl--~~~~Tp~dl   89 (106)
T 2eke_C           28 PETHINLKVSD-GS----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI--QADQTPEDL   89 (106)
T ss_dssp             CCSEEEEEEEC-SS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCTTTT
T ss_pred             CCCeEEEEEec-CC----cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc--CCCCCHHHc
Confidence            45788888875 32    4567999999999999999999999998766666644433  346677665

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=85.26  E-value=1.2  Score=28.38  Aligned_cols=63  Identities=6%  Similarity=0.097  Sum_probs=45.2

Q ss_pred             CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      .+++|.|.|....+    +...|.|.++.+++.++...+++.++++++--|+|=+..+  .+++|.++|
T Consensus        14 ~~~~i~ikV~~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l--~~~~Tp~dl   76 (93)
T 2d07_B           14 NNDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL   76 (93)
T ss_dssp             -CCEEEEEEECTTS----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCTTTT
T ss_pred             CCCeEEEEEECCCC----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc--CCCCCHHHc
Confidence            35788888875322    2347999999999999999999999988755555544433  345666654

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=84.37  E-value=3.8  Score=24.35  Aligned_cols=73  Identities=5%  Similarity=0.084  Sum_probs=48.2

Q ss_pred             eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717          27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY  106 (113)
Q Consensus        27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y  106 (113)
                      ++.|.|+...+    +...+.|..+.|++++...+..+.++++++--++| ++..+ ..+.|++++  .-+++..|++..
T Consensus         3 ~m~i~vk~~~g----~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L-~d~~tl~~~--~i~~~~~i~l~~   74 (79)
T 2uyz_B            3 YIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRI-ADNHTPKEL--GMEEEDVIEVYQ   74 (79)
T ss_dssp             EEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEEC-CTTCCHHHH--TCCTTEEEEEEE
T ss_pred             eEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEe-CCCCCHHHc--CCCCCCEEEEEE
Confidence            45666664322    23457899999999999999999999887555544 55543 456787764  122345666654


Q ss_pred             c
Q psy7717         107 C  107 (113)
Q Consensus       107 s  107 (113)
                      .
T Consensus        75 ~   75 (79)
T 2uyz_B           75 E   75 (79)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=82.87  E-value=0.87  Score=27.53  Aligned_cols=48  Identities=8%  Similarity=0.095  Sum_probs=37.6

Q ss_pred             cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          43 KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        43 k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      .-.|.|.++.+++.++....++.++++++--|+|=+..+  .+++|.+++
T Consensus        13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l--~~~~Tp~~l   60 (72)
T 1wm3_A           13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL   60 (72)
T ss_dssp             EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC--CTTCCTTTT
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc--CCCCCHHHc
Confidence            457999999999999999999999998777777755543  345666654

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=82.14  E-value=7.7  Score=24.77  Aligned_cols=73  Identities=8%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEE
Q psy7717          26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLV  103 (113)
Q Consensus        26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLy  103 (113)
                      ..+.|.|+..++    +...+.|+.+.||++|...|..+.++.+++--.+ .+++.+ ..+.++++    |+.  +..|+
T Consensus        22 ~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L-~D~~tL~~----ygI~~g~ti~   91 (106)
T 1ttn_A           22 YECQLRLRLSTG----KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPL-TDKMKFEE----LKIPKDYVVQ   91 (106)
T ss_dssp             CSEEEEEEETTT----EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEEC-CTTSHHHH----CCCSSSCEEE
T ss_pred             CeEEEEEEcCCC----CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEEC-CCCCcHHH----cCCCCCCEEE
Confidence            457777776432    2334779999999999999999999887644333 466554 44556654    454  66777


Q ss_pred             EEEcc
Q psy7717         104 LNYCK  108 (113)
Q Consensus       104 i~Ys~  108 (113)
                      |....
T Consensus        92 lv~~~   96 (106)
T 1ttn_A           92 VIVSQ   96 (106)
T ss_dssp             EECCC
T ss_pred             EEEeC
Confidence            76543

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=80.21  E-value=9.7  Score=24.69  Aligned_cols=80  Identities=11%  Similarity=0.157  Sum_probs=52.1

Q ss_pred             CccccccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhc
Q psy7717          17 SPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSF   96 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~   96 (113)
                      |.-+....|.+|.|.|+...+    ++..+.|.++.||++|-+.|..+.++++++-.-.| +++. -..+.|++    .|
T Consensus        11 ~~~~~~~~~~mIqI~Vk~~~G----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~-LkD~~TL~----dY   80 (93)
T 3plu_A           11 SSGLVPRGSHMIEVVVNDRLG----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSV-LKDHISLE----DY   80 (93)
T ss_dssp             ---------CEEEEEEECTTS----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEE-CCTTSBTG----GG
T ss_pred             cccccCCCCceEEEEEECCCC----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEE-ccCcCCHH----Hc
Confidence            334556788999999985321    45668899999999999999999999987655455 5554 34455663    56


Q ss_pred             CC--CCEEEEEE
Q psy7717          97 AT--NGSLVLNY  106 (113)
Q Consensus        97 kd--DGfLyi~Y  106 (113)
                      +.  +.-|.|.|
T Consensus        81 ~I~dgstLhL~~   92 (93)
T 3plu_A           81 EVHDQTNLELYY   92 (93)
T ss_dssp             TCCTTCEEEEEE
T ss_pred             CCCCCCEEEEEe
Confidence            75  44777776

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=80.05  E-value=7.2  Score=23.11  Aligned_cols=73  Identities=8%  Similarity=0.107  Sum_probs=47.1

Q ss_pred             eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717          27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY  106 (113)
Q Consensus        27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y  106 (113)
                      ++.|.|+...+    +...+.|+.+.||++|...|.++.++++++- -|+.+++.+ ..+.++++.  .-+++..|++..
T Consensus         3 ~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L-~d~~tL~~~--~i~~~~~l~l~~   74 (85)
T 3mtn_B            3 HMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSDY--NIQKWSTLFLLL   74 (85)
T ss_dssp             CEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEEC-CTTSBTGGG--TCCTTCEEEEEC
T ss_pred             eEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEEC-CCCCCHHHc--CCCCCCEEEEEE
Confidence            45566654322    2335679999999999999999999987643 344577654 346666653  112366777754


Q ss_pred             c
Q psy7717         107 C  107 (113)
Q Consensus       107 s  107 (113)
                      .
T Consensus        75 r   75 (85)
T 3mtn_B           75 R   75 (85)
T ss_dssp             C
T ss_pred             E
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1wz3a1	84	d.15.1.7 (A:10-93) Autophagy-related protein 12b (	7e-38
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	5e-21
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	3e-19
d1eo6a_	116	d.15.1.3 (A:) Golgi-associated ATPase enhancer of	1e-10

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  120 bits (303), Expect = 7e-38
 Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 27  KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
           K+ + LRATG APIL + K+ V      A++I F ++ +  D   SLF+YVN +F+P+PD
Sbjct: 2   KIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPD 58

Query: 87  TTIRALYDSFATNGSLVLNYCKTQAW 112
            ++  LY++F  +G LV+NY  + AW
Sbjct: 59  ESVIDLYNNFGFDGKLVVNYACSMAW 84

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (194), Expect = 5e-21
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 27  KVPILL---RATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAP 83
           K+P+++   +     P+L K K+LV    N++ +I   ++ ++++ +++ F+ VN     
Sbjct: 29  KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMV 88

Query: 84  SPDTTIRALYDSFAT-NGSLVLNYCKTQAWG 113
           S  T I  +Y+S    +G L + Y   + +G
Sbjct: 89  SVSTPISEVYESEKDEDGFLYMVYASQETFG 119

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (182), Expect = 3e-19
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 27  KVPILLRATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           +VP+++     A    L KKK+LV  D  V       +K I +   ++LF +VN    P 
Sbjct: 30  RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI-PP 88

Query: 85  PDTTIRALYDSFATN-GSLVLNYCKTQAWG 113
              T+  LY         L + Y     +G
Sbjct: 89  TSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (126), Expect = 1e-10
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 27  KVPILL-RATG-DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           +VP+++ + +G     + K+K+LV  D  VA  +   +K I++   +++F++V+++  P 
Sbjct: 28  RVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTV-PQ 86

Query: 85  PDTTIRALYDSFATN-GSLVLNYCKTQAWG 113
              T+  LY+      G L + Y     +G
Sbjct: 87  SSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	100.0
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	100.0
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	100.0
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	99.97
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	93.05
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	92.2
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	89.91
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	86.51
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	83.57
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	82.25
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	82.11

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-40  Score=227.60  Aligned_cols=97  Identities=24%  Similarity=0.476  Sum_probs=93.1

Q ss_pred             CccccccCCCeeEEEEEec---CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT---GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALY   93 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~---~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY   93 (113)
                      |..|++|||+|||||||+.   +++|.|+++||+||+++||+||+.+||++|++++++|||||||++++|+++++||+||
T Consensus        19 s~~i~~KyP~riPVIve~~~~~~~lp~Ldk~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFlfvn~~~~p~~~~~i~~lY   98 (119)
T d2zjda1          19 VRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVY   98 (119)
T ss_dssp             HHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHH
T ss_pred             HHHHHHHCCCcceEEEEECCCCCcCccccceEEEEecCccHHHHHHHHHHHhCCCCcceEEEEEcCCccCCchhHHHHHH
Confidence            5679999999999999974   4699999999999999999999999999999999999999999888999999999999


Q ss_pred             HhcCC-CCEEEEEEccccccC
Q psy7717          94 DSFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        94 ~~~kd-DGfLyi~Ys~~~afG  113 (113)
                      ++||| ||||||+||+++|||
T Consensus        99 ~~~kdeDGfLYi~Ys~entFG  119 (119)
T d2zjda1          99 ESEKDEDGFLYMVYASQETFG  119 (119)
T ss_dssp             HHHCCTTSCEEEEEEEHHHHH
T ss_pred             HHcCCCCCeEEEEEeccccCC
Confidence            99999 999999999999998

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-39  Score=224.01  Aligned_cols=97  Identities=25%  Similarity=0.447  Sum_probs=92.4

Q ss_pred             CCccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHH
Q psy7717          16 SSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALY   93 (113)
Q Consensus        16 ~~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY   93 (113)
                      +|+.|++|||+|||||||+.  +++|.|+++||+||.++||+||+.+||++|+++++++|||||||.+ |+++++||+||
T Consensus        19 es~~i~~KyPdriPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflfvn~~~-~~~~~ti~~lY   97 (118)
T d3d32a1          19 EGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI-PPTSATMGQLY   97 (118)
T ss_dssp             HHHHHHHHCTTEEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEBTTBC-CCTTCBHHHHH
T ss_pred             HHHHHHHHCCCCceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEEECCcc-cCccccHHHHH
Confidence            36789999999999999985  5799999999999999999999999999999999999999999986 78899999999


Q ss_pred             HhcCC-CCEEEEEEccccccC
Q psy7717          94 DSFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        94 ~~~kd-DGfLyi~Ys~~~afG  113 (113)
                      ++||| ||||||+||+++|||
T Consensus        98 ~~~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1          98 QEHHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             HHHCCTTSCEEEEEESCTTCC
T ss_pred             HHhCCCCcEEEEEEecccccC
Confidence            99999 999999999999999

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-38  Score=218.35  Aligned_cols=96  Identities=25%  Similarity=0.500  Sum_probs=92.1

Q ss_pred             CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717          17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD   94 (113)
Q Consensus        17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~   94 (113)
                      |..|++|||+|||||||+.  +++|.|+++||+||.++|++||+..||+||++++++||||||||+ +|+++++||+||+
T Consensus        18 s~~i~~KyP~rIPVIve~~~~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv~~~-l~~~s~~i~~lY~   96 (116)
T d1eo6a_          18 SAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT-VPQSSLTMGQLYE   96 (116)
T ss_dssp             HHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB-CCCTTSBHHHHHH
T ss_pred             HHHHHHHCCCCceEEEEECCcCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEECCc-ccchhhhHHHHHH
Confidence            6779999999999999986  579999999999999999999999999999999999999999997 5888999999999


Q ss_pred             hcCC-CCEEEEEEccccccC
Q psy7717          95 SFAT-NGSLVLNYCKTQAWG  113 (113)
Q Consensus        95 ~~kd-DGfLyi~Ys~~~afG  113 (113)
                      .||| ||||||+|++++|||
T Consensus        97 ~~KdeDGfLYi~Ys~entFG  116 (116)
T d1eo6a_          97 KEKDEDGFLYVAYSGENTFG  116 (116)
T ss_dssp             HHCCTTSCEEEEEECCCCCC
T ss_pred             HcCCCCcEEEEEEeccccCC
Confidence            9999 999999999999999

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.9e-31  Score=174.48  Aligned_cols=84  Identities=43%  Similarity=0.831  Sum_probs=81.9

Q ss_pred             CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEE
Q psy7717          26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLN  105 (113)
Q Consensus        26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~  105 (113)
                      +||.|.|+++|++|+|+++||.|+++.+|+.++.||||+|+   .+++|+|||++|+|++|+++|+||+||+.||.|+++
T Consensus         1 ~KV~v~fk~iG~aPilk~~~~kv~~~~~f~~vi~FLrk~Lk---~dsvf~Yin~sFaPspDe~vg~Ly~~f~~~gkLvv~   77 (84)
T d1wz3a1           1 QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVN   77 (84)
T ss_dssp             CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---CSSCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEE
T ss_pred             CcEEEEEEecCCCcccccceEEECCCCchHHHHHHHHHHhc---CCeEEEEEccccCCChhhHHHHHHHhcCCCCEEEEE
Confidence            58999999999999999999999999999999999999998   579999999999999999999999999999999999


Q ss_pred             Ecccccc
Q psy7717         106 YCKTQAW  112 (113)
Q Consensus       106 Ys~~~af  112 (113)
                      ||.++||
T Consensus        78 Y~~t~Aw   84 (84)
T d1wz3a1          78 YACSMAW   84 (84)
T ss_dssp             EESCSCC
T ss_pred             EeccccC
Confidence            9999998

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=93.05  E-value=0.085  Score=31.31  Aligned_cols=60  Identities=10%  Similarity=0.120  Sum_probs=43.7

Q ss_pred             CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      .+|.|.+...+     +...|.|.++.+++.++..+.++.++++++--|+| ++.. -..++|++++
T Consensus         3 ~~I~ikv~~~~-----~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f-~G~~-l~~~~T~~~~   62 (79)
T d1euvb_           3 THINLKVSDGS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIR-IQADQTPEDL   62 (79)
T ss_dssp             SEEEEEEESSS-----CEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEE-TTEE-CCTTCCTTTT
T ss_pred             cEEEEEECCCC-----eEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEE-CCEE-eCCCCCHHHC
Confidence            56777775422     33569999999999999999999999887655555 6655 3445666554

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.56  Score=27.11  Aligned_cols=69  Identities=12%  Similarity=0.219  Sum_probs=49.8

Q ss_pred             eEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEE
Q psy7717          28 VPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLN  105 (113)
Q Consensus        28 VpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~  105 (113)
                      |.|.++...+    ++-.+-|.++.||+++...|..+.++++++ .-|+.+++.+ ..+.++++    |+.  +..|+|.
T Consensus         2 i~i~vk~~~G----k~~~v~V~~~~tV~~lK~~I~~~~~i~~~~-q~Li~~Gk~L-~d~~tL~~----y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLG----KKVRVKCLAEDSVGDFKKVLSLQIGTQPNK-IVLQKGGSVL-KDHISLED----YEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTT----EEEEEEECTTSBHHHHHHHHHHHHCCTTTS-EEEESSSCEE-CTTSBHHH----HTCCTTEEEEEE
T ss_pred             eEEEEECCCC----CEEEEEECCcCcHHHHHHHHHHhhcccccE-EEEEEEeEEe-cccCcHHH----cCCCCCCEEEEE
Confidence            5566665421    345578999999999999999999999865 4555566664 45678876    555  5578887


Q ss_pred             E
Q psy7717         106 Y  106 (113)
Q Consensus       106 Y  106 (113)
                      |
T Consensus        72 ~   72 (73)
T d1m94a_          72 Y   72 (73)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.52  Score=27.48  Aligned_cols=61  Identities=7%  Similarity=0.098  Sum_probs=44.4

Q ss_pred             CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717          26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL   92 (113)
Q Consensus        26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L   92 (113)
                      ++|.|.|....+    +.-.|.|.++.+++.++....++.++++++--|+| ++..+ ..+.|.+++
T Consensus         1 e~I~ikv~~~dg----~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~f-dG~~l-~~~~T~~~l   61 (77)
T d2uyzb1           1 EYIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRI-ADNHTPKEL   61 (77)
T ss_dssp             CEEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEEC-CTTCCHHHH
T ss_pred             CEEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEE-CCEEC-CCCCCHHHc
Confidence            356666664322    23469999999999999999999999887766664 55443 346788876

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.51  E-value=1.8  Score=25.26  Aligned_cols=60  Identities=7%  Similarity=0.138  Sum_probs=44.5

Q ss_pred             CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717          25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA   91 (113)
Q Consensus        25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~   91 (113)
                      +..|.|.|+..++     +..+-|.++.||++|-..|..+.++++++- -|+.+++.+- .+.++++
T Consensus         8 ~~~i~v~Vk~~~~-----~~~i~v~~~~tV~~lK~~I~~~~~v~~~~q-rL~f~Gk~L~-d~~tL~~   67 (83)
T d1wx8a1           8 SRIIRVSVKTPQD-----CHEFFLAENSNVRRFKKQISKYLHCNADRL-VLIFTGKILR-DQDILSQ   67 (83)
T ss_dssp             SCEEEEEEECSSS-----EEEEEEETTCCHHHHHHHHHHHTCSCTTTB-CCEETTEECC-TTSCHHH
T ss_pred             CCeEEEEEEcCCC-----cEEEEECCCChHHHHHHHHHHHhCCChhHE-EEEEEhhccc-cCCcHHH
Confidence            3568888875442     345889999999999999999999987654 4445777654 4667776

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=3.2  Score=25.15  Aligned_cols=72  Identities=13%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             ccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC-CC
Q psy7717          22 AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-NG  100 (113)
Q Consensus        22 ~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-DG  100 (113)
                      ...|..|.|.|+..+     ++..+-|+.+.||++|-..|..+.+++++ ..-|+.+++.+ ..+.++++    |+. ||
T Consensus        27 ~~~~~~i~V~Vk~~~-----~~~~i~V~~~~tV~~LK~~I~~~~gi~~~-~qrLi~~Gk~L-~D~~tL~~----~~I~~g   95 (103)
T d1j8ca_          27 PAEPKIIKVTVKTPK-----EKEEFAVPENSSVQQFKEAISKRFKSQTD-QLVLIFAGKIL-KDQDTLIQ----HGIHDG   95 (103)
T ss_dssp             CCCCCCEEEEEECSS-----CEEEEEECTTCCHHHHHHHHHHHHCSCSS-SEEEEETTEEE-STTSCGGG----TTCSSS
T ss_pred             CCCCCeEEEEEECCC-----ccEEEEECCCChHHHHHHHHHHHHCcCHH-Heeeeeeeecc-cCCCcHHH----cCCCCC
Confidence            345667888887532     23458899999999999999999999875 45666788764 45666655    554 44


Q ss_pred             -EEEE
Q psy7717         101 -SLVL  104 (113)
Q Consensus       101 -fLyi  104 (113)
                       .++|
T Consensus        96 ~~I~l  100 (103)
T d1j8ca_          96 LTVHL  100 (103)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence             4544

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.25  E-value=2.1  Score=24.76  Aligned_cols=59  Identities=7%  Similarity=0.050  Sum_probs=44.1

Q ss_pred             ccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEE
Q psy7717          42 TKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNY  106 (113)
Q Consensus        42 ~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Y  106 (113)
                      +...+-|.++.||+++...|..+.++++++-- |+.+++.+ ..+.++++    |+.  +..|+|.-
T Consensus        14 ~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qr-Li~~Gk~L-~d~~tL~~----y~I~~~sti~lvi   74 (80)
T d1ttna1          14 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQR-WFFSGRPL-TDKMKFEE----LKIPKDYVVQVIV   74 (80)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCE-EEETTEEC-CTTSHHHH----CCCSSSCEEEEEC
T ss_pred             CEEEEEECCcCcHHHHHHHHHHHhCCCcccEE-EEECceEc-CCCCcHHH----cCCCCCCEEEEEe
Confidence            34567899999999999999999999887654 44556554 45778877    565  77777754

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.11  E-value=3.1  Score=25.36  Aligned_cols=61  Identities=11%  Similarity=0.046  Sum_probs=43.1

Q ss_pred             ccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717          42 TKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY  106 (113)
Q Consensus        42 ~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y  106 (113)
                      +.-.+-|..+.||.+|...|..+++++++ .+=|+.+++.+ ..+.||++.  .-+++..+++-.
T Consensus        30 ~~~~lev~~~~TV~~LK~~I~~~~gi~~~-~qkLi~~Gk~L-~d~~tL~~~--gI~~~s~i~vi~   90 (100)
T d1wjua_          30 RKNLLETRLHITGRELRSKIAETFGLQEN-YIKIVINKKQL-QLGKTLEEQ--GVAHNVKAMVLE   90 (100)
T ss_dssp             SSEEEEEESSSBHHHHHHHHHHHTTCCST-TCEEEETTEEC-CTTSBHHHH--TCCSSEEEEEEC
T ss_pred             eEEEEEECCCcHHHHHHHHHHHHHCCCCe-eEEEEEcccCc-CCCcCHHHc--CCCCCCEEEEEE
Confidence            34457799999999999999999999875 45566677664 457788764  222255665543