Psyllid ID: psy7738

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
MAAYLSELYKCQVVEQNLKLKNRYSRNQRSSPYDIGQSKHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIETYNNNENHSNKNTSNGLDKQ
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEccccccccccccccEEEEEEcccEEEEEccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcEEccccccHcccccccHHcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccEEEEEEEccEEEEEccEEEEccccccccEEEEEccccEEEEEEccHHHHHEcccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MAAYLSELYKCQVVEQNLKLknrysrnqrsspydigqskHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSslaeqgqykpctvdraplrnkyffgegytYGSQLVRKglgnerlypegevdpipaWIQSLVITKleqmgvvppnyinsavindyqpggcivshidpphifdrpiislslfsdsalcfgckfnfkpirvsepvlylpvqRGCVTLLRDFAangithcvrpqdtQHRRAVILLRRVlphaprltlsqtprvkpyhslydvqaresggyfrSSIEtynnnenhsnkntsngldkq
MAAYLSELYKCQVVEQNLklknrysrnqrsspydigqskHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSslaeqgqykpctvdrapLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGIthcvrpqdtqhRRAVILLRrvlphaprltlsqtprvkpyhsLYDVQARESGGYFRSSIEtynnnenhsnkntsngldkq
MAAYLSELYKCQVVEQNLKLKNRYSRNQRSSPYDIGQSKHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIetynnnenhsnkntsnGLDKQ
***YLSELYKCQVVEQNL*****************************KILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQA*****YF*************************
************************************************ILQGVNQMSLFSHEECLALERNIDEVSSLAEQ**Y****VDRAPLRNKYFFGEGYTYGSQLVRKG**NERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNF****VSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPH*******************************************************
MAAYLSELYKCQVVEQNLKLKNRYS*****************RELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIETYNNNENHS***********
MAAYLSELYKCQVVEQNLKL**************IGQSKHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRLTLS*T*R********************************************
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MAAYLSELYKCQVVEQNLKLKNRYSRNQRSSPYDIGQSKHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIETYNNNENHSNKNTSNGLDKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query307 2.2.26 [Sep-21-2011]
Q66JG8358 RNA demethylase ALKBH5 OS yes N/A 0.690 0.592 0.660 3e-84
Q6GPB5360 RNA demethylase ALKBH5 OS N/A N/A 0.690 0.588 0.650 3e-84
Q6P6C2394 RNA demethylase ALKBH5 OS yes N/A 0.684 0.532 0.666 1e-82
Q3TSG4395 RNA demethylase ALKBH5 OS yes N/A 0.768 0.597 0.605 2e-82
D3ZKD3395 RNA demethylase ALKBH5 OS yes N/A 0.768 0.597 0.605 2e-82
E1BH29394 RNA demethylase ALKBH5 OS yes N/A 0.684 0.532 0.666 2e-82
Q08BA6352 RNA demethylase ALKBH5 OS yes N/A 0.788 0.687 0.582 5e-82
>sp|Q66JG8|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1 Back     alignment and function desciption
 Score =  311 bits (798), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 140/212 (66%), Positives = 171/212 (80%)

Query: 47  QKILQGVNQMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYG 106
           +K+  G+ Q+ LFS +EC  +E  IDEV S AE+G Y+  TVDRAPLRNKYFFGEGYTYG
Sbjct: 49  RKVRSGIRQVRLFSPDECARIEAKIDEVVSRAEKGLYREHTVDRAPLRNKYFFGEGYTYG 108

Query: 107 SQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIV 166
           +QL R+G G ERLYP+GEVD IPAW+  LVI +L +  V+P  ++NSAVINDYQPGGCIV
Sbjct: 109 AQLQRRGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFVNSAVINDYQPGGCIV 168

Query: 167 SHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAAN 226
           SH+DP HIF+RPI+S+S FSDSALCFGCKF FKPIRVSEPV +LPVQRG VT+L  +AA+
Sbjct: 169 SHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVQRGSVTVLSGYAAD 228

Query: 227 GITHCVRPQDTQHRRAVILLRRVLPHAPRLTL 258
            ITHC+RPQD + RRAV++LR+    APRL +
Sbjct: 229 EITHCIRPQDIKERRAVVILRKTRTEAPRLEM 260
Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Xenopus tropicalis (taxid: 8364)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q6GPB5|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1 Back     alignment and function description
>sp|Q6P6C2|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2 Back     alignment and function description
>sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2 Back     alignment and function description
>sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1 Back     alignment and function description
>sp|E1BH29|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1 Back     alignment and function description
>sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
327287260379 PREDICTED: probable alpha-ketoglutarate- 0.771 0.625 0.630 6e-83
118097886374 PREDICTED: probable alpha-ketoglutarate- 0.684 0.561 0.680 1e-82
56118909358 RNA demethylase ALKBH5 [Xenopus (Siluran 0.690 0.592 0.660 2e-82
148231788360 RNA demethylase ALKBH5 [Xenopus laevis] 0.690 0.588 0.650 2e-82
387015598389 alkylated DNA repair protein alkB-like 5 0.684 0.539 0.676 6e-82
224070277383 PREDICTED: probable alpha-ketoglutarate- 0.684 0.548 0.676 1e-81
348537052357 PREDICTED: probable alpha-ketoglutarate- 0.824 0.708 0.563 1e-81
344298054394 PREDICTED: probable alpha-ketoglutarate- 0.684 0.532 0.671 1e-81
395514234384 PREDICTED: probable alpha-ketoglutarate- 0.758 0.606 0.618 2e-81
126333790384 PREDICTED: probable alpha-ketoglutarate- 0.758 0.606 0.618 2e-81
>gi|327287260|ref|XP_003228347.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5-like [Anolis carolinensis] Back     alignment and taxonomy information
 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 179/238 (75%), Gaps = 1/238 (0%)

Query: 21  KNRYSRNQRSSPYDIGQSKHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQ 80
           K +Y  +  S P D  + +    E  QK+  G+ Q+ LFS EEC  +E  IDEV S AE+
Sbjct: 42  KRKYHEDSESEPSDYEERQREEEEA-QKVKSGIRQLRLFSPEECAKIEARIDEVVSRAEK 100

Query: 81  GQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKL 140
           G YK  TVDRAPLRNKYFFGEGYTYGSQL R+G G ERLYP GEVD IP W+  LVI KL
Sbjct: 101 GLYKEHTVDRAPLRNKYFFGEGYTYGSQLQRRGPGQERLYPRGEVDTIPEWVHDLVIRKL 160

Query: 141 EQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKP 200
            +  V+P  ++NSAVINDYQPGGCIVSH+DP HIF+RPI+S+S FSDSALCFGCKF FKP
Sbjct: 161 VEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKP 220

Query: 201 IRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRLTL 258
           IRVSEPV +LPV+RG VT+L  +AA+ ITHC+RPQD + RRAVI+LR+    APRL +
Sbjct: 221 IRVSEPVFFLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRLEM 278

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Class:

Phylum: Chordata

Superkingdom: Eukaryota
>gi|118097886|ref|XP_001233463.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Gallus gallus] Back     alignment and taxonomy information
>gi|56118909|ref|NP_001008038.1| RNA demethylase ALKBH5 [Xenopus (Silurana) tropicalis] gi|82181400|sp|Q66JG8.1|ALKB5_XENTR RecName: Full=RNA demethylase ALKBH5; AltName: Full=Alkylated DNA repair protein alkB homolog 5; AltName: Full=Alpha-ketoglutarate-dependent dioxygenase alkB homolog 5 gi|51704081|gb|AAH80920.1| MGC79570 protein [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|148231788|ref|NP_001085704.1| RNA demethylase ALKBH5 [Xenopus laevis] gi|82201093|sp|Q6GPB5.1|ALKB5_XENLA RecName: Full=RNA demethylase ALKBH5; AltName: Full=Alkylated DNA repair protein alkB homolog 5; AltName: Full=Alpha-ketoglutarate-dependent dioxygenase alkB homolog 5 gi|49118231|gb|AAH73226.1| MGC80552 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|387015598|gb|AFJ49918.1| alkylated DNA repair protein alkB-like 5 protein [Crotalus adamanteus] Back     alignment and taxonomy information
>gi|224070277|ref|XP_002188303.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|348537052|ref|XP_003456009.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|344298054|ref|XP_003420709.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Loxodonta africana] Back     alignment and taxonomy information
>gi|395514234|ref|XP_003761324.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|126333790|ref|XP_001364359.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Monodelphis domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
UNIPROTKB|F1NIA5375 ALKBH5 "Uncharacterized protei 0.794 0.650 0.623 1.1e-78
UNIPROTKB|Q66JG8358 alkbh5 "RNA demethylase ALKBH5 0.719 0.617 0.642 7.1e-77
UNIPROTKB|E1BH29394 ALKBH5 "RNA demethylase ALKBH5 0.804 0.626 0.596 9e-77
UNIPROTKB|E2RPR0434 ALKBH5 "Uncharacterized protei 0.801 0.566 0.599 1.1e-76
UNIPROTKB|Q6P6C2394 ALKBH5 "RNA demethylase ALKBH5 0.801 0.624 0.599 1.1e-76
UNIPROTKB|Q6GPB5360 alkbh5 "RNA demethylase ALKBH5 0.732 0.625 0.622 1.1e-76
RGD|1309496395 Alkbh5 "alkB, alkylation repai 0.768 0.597 0.605 1.3e-75
MGI|MGI:2144489395 Alkbh5 "alkB, alkylation repai 0.768 0.597 0.605 1.7e-75
ZFIN|ZDB-GENE-061013-602352 alkbh5 "alkB, alkylation repai 0.837 0.730 0.562 7.3e-75
UNIPROTKB|I3LGP5327 ALKBH5 "Uncharacterized protei 0.449 0.422 0.582 1.3e-38
UNIPROTKB|F1NIA5 ALKBH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 154/247 (62%), Positives = 183/247 (74%)

Query:    21 KNRYSRNQRSSPYDIGQSKHHARELRQKILQGVNQMSLFSHEECLALERNIDEVSSLAEQ 80
             K RY  +  S   D  + K    E  +K+  G+ Q+ LFS EEC  +E  ID+V S AE+
Sbjct:    38 KRRYHEDSGSEHSDYEEQKEE--EEARKVKSGIRQLRLFSAEECAKIEARIDDVVSRAEK 95

Query:    81 GQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKL 140
             G YK  TVDRAPLRNKYFFGEGYTYGSQL R+G G ERLYP GEVD IP W+  LVI KL
Sbjct:    96 GLYKEHTVDRAPLRNKYFFGEGYTYGSQLQRRGPGQERLYPRGEVDAIPEWVHDLVIRKL 155

Query:   141 EQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKP 200
              +  V+P  ++NSAVINDYQPGGCIVSH+DP HIF+RPI+S+S FSDSALCFGCKF FKP
Sbjct:   156 VEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKP 215

Query:   201 IRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQHRRAVILLRRVLPHAPRL-TLS 259
             IRVSEPVL+LPV+RG VT+L  +AA+ ITHC+RPQD + RRAVI+LR+    APRL T S
Sbjct:   216 IRVSEPVLFLPVKRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRLETKS 275

Query:   260 QTPRVKP 266
              +  V P
Sbjct:   276 LSSSVLP 282
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
UNIPROTKB|Q66JG8 alkbh5 "RNA demethylase ALKBH5" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|E1BH29 ALKBH5 "RNA demethylase ALKBH5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPR0 ALKBH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6C2 ALKBH5 "RNA demethylase ALKBH5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GPB5 alkbh5 "RNA demethylase ALKBH5" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|1309496 Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2144489 Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-602 alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LGP5 ALKBH5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q08BA6ALKB5_DANRE1, ., 1, 4, ., 1, 1, ., -0.58260.78820.6875yesN/A
E1BH29ALKB5_BOVIN1, ., 1, 4, ., 1, 1, ., -0.66660.68400.5329yesN/A
Q3TSG4ALKB5_MOUSE1, ., 1, 4, ., 1, 1, ., -0.60590.76870.5974yesN/A
Q6P6C2ALKB5_HUMAN1, ., 1, 4, ., 1, 1, ., -0.66660.68400.5329yesN/A
D3ZKD3ALKB5_RAT1, ., 1, 4, ., 1, 1, ., -0.60590.76870.5974yesN/A
Q66JG8ALKB5_XENTR1, ., 1, 4, ., 1, 1, ., -0.66030.69050.5921yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 3e-07
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 2e-04
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 25/183 (13%)

Query: 58  LFSHEECLALERNIDEVSSLAEQGQY-----KPCTVDRAPLRNKYFFGEGYTYGSQLVRK 112
             S EE  AL   + E+ + A   Q      KP +V         +  +G  Y       
Sbjct: 8   FLSAEEQAAL---LRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTDGPGYRYS---- 60

Query: 113 GLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPP 172
                         P PA +  L   +L      P    N+ ++N Y+PG  +  H D  
Sbjct: 61  ----GTPVTGEPWPPFPAVLLQLA-ERLAAAAGPPGFEPNACLVNFYRPGARMGLHQDKD 115

Query: 173 HI-FDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHC 231
            + F  PI+S+SL  D AL     F F      +P + LP++ G V L+    +    H 
Sbjct: 116 ELDFGAPIVSVSL-GDPAL-----FRFGGKTRDDPTIALPLESGDV-LVMGGPSRLAYHG 168

Query: 232 VRP 234
           V  
Sbjct: 169 VPR 171

Length = 190
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 307
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 100.0
KOG3959|consensus306 99.97
KOG4176|consensus323 99.95
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.94
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.91
KOG3200|consensus224 99.9
KOG2731|consensus378 98.44
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.18
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 98.1
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 97.6
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.29
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 96.72
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 96.72
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 95.96
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 94.96
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 94.45
PLN00052310 prolyl 4-hydroxylase; Provisional 94.12
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 89.39
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 88.64
PLN02947374 oxidoreductase 87.85
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 87.6
PLN02156335 gibberellin 2-beta-dioxygenase 87.06
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.97
PLN02254358 gibberellin 3-beta-dioxygenase 86.74
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 86.36
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.04
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.87
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.34
PLN02704335 flavonol synthase 85.3
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 85.09
PTZ00273320 oxidase reductase; Provisional 85.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.77
PLN02276361 gibberellin 20-oxidase 83.71
COG3826236 Uncharacterized protein conserved in bacteria [Fun 82.93
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 82.62
KOG0143|consensus322 82.54
PLN02365300 2-oxoglutarate-dependent dioxygenase 82.09
PLN02216357 protein SRG1 81.6
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 81.13
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 80.99
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.1e-32  Score=244.43  Aligned_cols=183  Identities=20%  Similarity=0.257  Sum_probs=138.4

Q ss_pred             ccccCCee-ecCCCCHHHHHHHHHHHHHHHhhhhcCCCCcccccC--CCCceE-----eecC--CceecCccccccCCCC
Q psy7738          47 QKILQGVN-QMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDR--APLRNK-----YFFG--EGYTYGSQLVRKGLGN  116 (307)
Q Consensus        47 ~~v~~Gl~-~~~flt~~Ee~~L~~~i~el~~~~~~~~~~~~t~~~--~~~R~~-----~~fG--~~y~y~~~~~~~~~~~  116 (307)
                      ..+.||+. +++| +.+++++|++.|.++...  ....++.+..+  .+.|++     .|+|  ..|.|+....      
T Consensus        14 ~~~~~g~~~~~~~-~~~~~~~l~~~~~~~~~~--~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~------   84 (213)
T PRK15401         14 EPLAPGAVLLRGF-ALAAAEALLAAIEAVAAQ--APFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDP------   84 (213)
T ss_pred             eecCCCcEEeCCC-CHHHHHHHHHHHHHHHhc--CCccceecCCCCcceeEEeccccceEecCCCCcccCCcCC------
Confidence            46889999 5999 599999999999886433  22334444432  266777     5554  3577774110      


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHhcCCCCCCCCcEEEEeecCCCCCCCCCCC-CCCCCCCCeEEEEcCCCccccccee
Q psy7738         117 ERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHID-PPHIFDRPIISLSLFSDSALCFGCK  195 (307)
Q Consensus       117 ~~~~~~~~~~plP~~l~~l~i~rl~~~~~~~~~~~n~~lIN~Y~pG~~IgpH~D-~~~~fg~~IvslSL~Sds~Lg~g~~  195 (307)
                         ....++++||++|.++. +++....-++...||+||||+|.+|++|+||+| ++..|+.||+|||      ||..|+
T Consensus        85 ---~~~~pwp~~P~~l~~L~-~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvS------LG~~~~  154 (213)
T PRK15401         85 ---LTGKPWPAMPASFLALA-QRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVS------LGLPAV  154 (213)
T ss_pred             ---CCCCCCCCchHHHHHHH-HHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEe------CCCCeE
Confidence               11237889999998887 666543222233499999999999999999999 4677999999999      999999


Q ss_pred             EEeecCCCCCCeEEEEecCCcEEEecccccccccccccCCCC------CCCeEEEEEeee
Q psy7738         196 FNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDT------QHRRAVILLRRV  249 (307)
Q Consensus       196 ~~f~~~~~~~~~~~v~L~~GSLLVM~G~aR~~W~H~Ip~~~~------~~~RISLTFR~v  249 (307)
                      |.|++.+..++..+|.|++||||||+|++|+ |.|+||+...      .++|||||||++
T Consensus       155 F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~  213 (213)
T PRK15401        155 FQFGGLKRSDPLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA  213 (213)
T ss_pred             EEecccCCCCceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence            9998765566678999999999999999998 5699999731      237999999975

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>KOG3959|consensus Back     alignment and domain information
>KOG4176|consensus Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3200|consensus Back     alignment and domain information
>KOG2731|consensus Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>KOG0143|consensus Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 9e-14
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 6e-09
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
 Score = 69.8 bits (170), Expect = 9e-14
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 59  FSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNER 118
            S EE   L  ++D       Q   K         R    FG  + Y +  V K      
Sbjct: 120 ISSEEEKMLLESVDWTEDTDNQNSQK-----SLKHRRVKHFGYEFHYENNNVDK------ 168

Query: 119 LYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRP 178
              +     +P   +S +   L +      +  +   IN Y+PG  I +HID    F+  
Sbjct: 169 --DKPLSGGLPDICESFLEKWLRK--GYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDE 224

Query: 179 IISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQ 238
           I+SLSL S+         +FK        + LP  R  + ++   +    TH +  +   
Sbjct: 225 IVSLSLGSE------IVMDFKHPDGIAVPVMLP--RRSLLVMTGESRYLWTHGITCRKFD 276

Query: 239 HRRAVILLRRVLPHAPRLTLSQTPR 263
             +A   L+  +  +    L+ + R
Sbjct: 277 TVQASESLKSGIITSDVGDLTLSKR 301
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 100.0
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 100.0
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 100.0
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 98.42
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 97.01
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.97
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 96.76
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 96.08
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 95.19
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 94.76
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 94.16
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 93.89
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.13
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 92.59
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 91.93
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 88.3
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 88.01
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 87.12
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 86.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 85.53
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 85.23
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 83.49
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 81.91
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-36  Score=290.18  Aligned_cols=184  Identities=22%  Similarity=0.260  Sum_probs=131.8

Q ss_pred             ccccCCee-ecCCCCHHHHHHHHHHHHHHHhhhhcCCCCcccccCCCCceEeecCCceecCccccccCCCCcccCCCCCC
Q psy7738          47 QKILQGVN-QMSLFSHEECLALERNIDEVSSLAEQGQYKPCTVDRAPLRNKYFFGEGYTYGSQLVRKGLGNERLYPEGEV  125 (307)
Q Consensus        47 ~~v~~Gl~-~~~flt~~Ee~~L~~~i~el~~~~~~~~~~~~t~~~~~~R~~~~fG~~y~y~~~~~~~~~~~~~~~~~~~~  125 (307)
                      ..++|||. +++|||++|++.|++   ++.|.+....+.++...  .+|+++|||+.|+|+......  +  .    ..+
T Consensus       107 ~~lp~Gl~~~p~fis~~Ee~~Ll~---~i~w~~~~~~~~~~~~l--~~Rr~~~yG~~Y~Ys~~~~~~--~--~----p~p  173 (345)
T 3tht_A          107 QALPPGLMVVEEIISSEEEKMLLE---SVDWTEDTDNQNSQKSL--KHRRVKHFGYEFHYENNNVDK--D--K----PLS  173 (345)
T ss_dssp             CSCCTTEEEETTCSCHHHHHHHHT---TCC------------------CEEECCC-------------------------
T ss_pred             ccCCCceEEEcCcCCHHHHHHHHH---hcccCCccccccCcccc--cCceEEEECCccccccccccc--C--C----CCC
Confidence            46789999 599999999998864   45577765555554443  899999999999998532211  0  0    124


Q ss_pred             CCCcHHHHHHHHHHHHhcCCCCCCCCcEEEEeecCCCCCCCCCCCCCCCCCCCeEEEEcCCCcccccceeEEeecCCCCC
Q psy7738         126 DPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSE  205 (307)
Q Consensus       126 ~plP~~l~~l~i~rl~~~~~~~~~~~n~~lIN~Y~pG~~IgpH~D~~~~fg~~IvslSL~Sds~Lg~g~~~~f~~~~~~~  205 (307)
                      .+||+||..++ +|+...++++.. ||+|+||+|.+|++|+||.|+++.|+++|+|||      ||..++|.|++.+  +
T Consensus       174 ~~~P~~L~~l~-~r~~~~~~~~~~-~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~slS------LG~~~~f~f~~~~--~  243 (345)
T 3tht_A          174 GGLPDICESFL-EKWLRKGYIKHK-PDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLS------LGSEIVMDFKHPD--G  243 (345)
T ss_dssp             -CCCHHHHHHH-HHHHHHTSCSSC-CSEEEEEEECTTCCEEEECCCTTTBCSCEEEEE------ESSCEEEEEECTT--S
T ss_pred             cCcCHHHHHHH-HHHHhcccCCCC-CCEEEEEEecCCCCEeeccCCchhcCCeEEEEE------CCCceeEEEccCC--C
Confidence            67999998887 888776766544 999999999999999999999999999999999      8888899998743  4


Q ss_pred             CeEEEEecCCcEEEecccccccccccccCCC-------------------------CCCCeEEEEEeeecCCC
Q psy7738         206 PVLYLPVQRGCVTLLRDFAANGITHCVRPQD-------------------------TQHRRAVILLRRVLPHA  253 (307)
Q Consensus       206 ~~~~v~L~~GSLLVM~G~aR~~W~H~Ip~~~-------------------------~~~~RISLTFR~v~~~~  253 (307)
                      ..++|.|++||||||+|++|+.|+|+||++.                         .+++|||||||++.+++
T Consensus       244 ~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~~  316 (345)
T 3tht_A          244 IAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTP  316 (345)
T ss_dssp             CEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSSC
T ss_pred             ceEEEEcCCCcEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCCC
Confidence            5789999999999999999999999999981                         16789999999998873
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 307
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 1e-09
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 2e-04
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 26/180 (14%)

Query: 88  VDRAPLRNKYFFGEGYTYGSQLVRKGLG---NERLYPEGEVDP--------IPAWIQSLV 136
             ++P R     G      +      LG   + + Y    +DP        +P    +L 
Sbjct: 27  ASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC 86

Query: 137 ITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDP-PHIFDRPIISLSLFSDSALCFGCK 195
                  G  P    ++ +IN Y PG  +  H D        PI+S+SL           
Sbjct: 87  QRAATAAGY-PDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGL------PAI 139

Query: 196 FNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRP------QDTQHRRAVILLRRV 249
           F F  ++ ++P+  L ++ G V +     +    H ++P        T   R  +  R+ 
Sbjct: 140 FQFGGLKRNDPLKRLLLEHGDVVVWGGE-SRLFYHGIQPLKAGFHPLTIDCRYNLTFRQA 198
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 100.0
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 96.65
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 96.6
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 91.09
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 90.87
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 88.86
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-34  Score=249.86  Aligned_cols=176  Identities=18%  Similarity=0.198  Sum_probs=135.5

Q ss_pred             Cee-ecCCCCHHHHHHHHHHHHH-HHhhhhcCCCCcccccCCCCceEeecC-CceecCccccccCCCCcccCCCCCCCCC
Q psy7738          52 GVN-QMSLFSHEECLALERNIDE-VSSLAEQGQYKPCTVDRAPLRNKYFFG-EGYTYGSQLVRKGLGNERLYPEGEVDPI  128 (307)
Q Consensus        52 Gl~-~~~flt~~Ee~~L~~~i~e-l~~~~~~~~~~~~t~~~~~~R~~~~fG-~~y~y~~~~~~~~~~~~~~~~~~~~~pl  128 (307)
                      ||. ++||||++|++.|++.|.+ ++|........++...  .+|++.++| ..|.|+....            ....+|
T Consensus        20 ~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~--~pR~~~~~~d~~y~y~~~~~------------~~~~~~   85 (210)
T d2iuwa1          20 RVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQ--QPRLTAWYGELPYTYSRITM------------EPNPHW   85 (210)
T ss_dssp             EEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEE--CSSEEEEEECCCTTSCHHHH------------CCBSSC
T ss_pred             eEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccc--eeeeeEEecCcCcccccccc------------ccCCCC
Confidence            466 4999999999999988755 6776654444444444  789998876 5666663111            145678


Q ss_pred             cHHHHHHHHHHHHhcCCCCCCCCcEEEEeecCCC-CCCCCCCCCCCCCC--CCeEEEEcCCCcccccceeEEeecCC---
Q psy7738         129 PAWIQSLVITKLEQMGVVPPNYINSAVINDYQPG-GCIVSHIDPPHIFD--RPIISLSLFSDSALCFGCKFNFKPIR---  202 (307)
Q Consensus       129 P~~l~~l~i~rl~~~~~~~~~~~n~~lIN~Y~pG-~~IgpH~D~~~~fg--~~IvslSL~Sds~Lg~g~~~~f~~~~---  202 (307)
                      |++|..+. +++....  .. .+|+|+||.|.+| ++|+||+|++..|+  ++|++||      ||..+.|.|++..   
T Consensus        86 ~~~l~~l~-~~~~~~~--~~-~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slS------lG~~~~~~~r~~~~~~  155 (210)
T d2iuwa1          86 HPVLRTLK-NRIEENT--GH-TFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLS------FGATRTFEMRKKPPPE  155 (210)
T ss_dssp             CHHHHHHH-HHHHHHH--SC-CCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEE------EESCEEEEEEECCC--
T ss_pred             cHHHHHHH-Hhhhhhc--Cc-cchhhhhhccccCCCccccCcCCchhcccCCceeEEe------eCCceEEEEccccccc
Confidence            99997776 6665431  22 3889999988776 69999999988885  5799999      8888999997532   


Q ss_pred             -----CCCCeEEEEecCCcEEEecccccccccccccCC-CCCCCeEEEEEeeecC
Q psy7738         203 -----VSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQ-DTQHRRAVILLRRVLP  251 (307)
Q Consensus       203 -----~~~~~~~v~L~~GSLLVM~G~aR~~W~H~Ip~~-~~~~~RISLTFR~v~~  251 (307)
                           ...+.++|+|++||||||.|++|+.|+|+||++ ...++|||||||++.|
T Consensus       156 ~~~~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         156 ENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP  210 (210)
T ss_dssp             ------CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC
T ss_pred             cCCccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeecC
Confidence                 134579999999999999999999999999997 4678999999999876
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure