Psyllid ID: psy7749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MNFYMEPQFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEcccEEcccccEEEEEHHHHcccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccEEEEEccccEEEHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHcccccccccEEEccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEcccHccccHHHHHHHHHHHHHHccccccHHEEEEEcccccccEEEccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccEEEcccccEEEEEEEEEcccccccccccHHHHEcccccccccccccccccccccccccHHHHHHHHHHHHHccccHcHHEEEEEcccccccEEEccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHc
Coil and Loop (DISEMBL)
mnfymepqfnettlgpnwfiksgfycnlktDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAmglapnlpeDLYCLIKKAVAIRKHLErsrkdkdskFRLILVESRIHRLARYYktkavlppnwkyesaTASAFILEGFrfrtrrgfrykidlvgllddnfynkkslkmgrmhtpgkgisksalpyrrsvpnwlkltSEDVKDHIFKLskkgltpsqigVILRDSHGVAQVRFVSGNKILRIMKAmglapnlpeDLYCLIKKAVAIRKHLErsrkdkdskFRLILVESRIHRLARYYktkavlppnwkyesATASALVA
Flexible Loop (DISEMBL)
MNFYMEPQFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKhlersrkdkdskfrlilvesrihrlaryyktkavlppnwkyesaTASAFILEGFRFRTRRGFrykidlvgllddnFYNKKslkmgrmhtpgkgisksalpyrRSVPNWLKLTSEDVKDHIFKlskkgltpsqIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKhlersrkdkdskfrliLVESRIHRLAryyktkavlppnwkyesatasalva
Low Complexity Region (SEG)
MNFYMEPQFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEgfrfrtrrgfrYKIDLVGLLDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA
Disordered region (IsUnstruct)
********FNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLE*******SKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLK***************LPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLE*******SKFRLILVESRIHRLARYYKTKAVLPPNWKY**********
Disordered Region (DISOPRED)
**FYM**QFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHL******KDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLKMG**************PYRRSVPNWLKLTSEDVKDHIFKLSK**********ILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLE*****KDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA
Disordered Region (DISEMBL)
MNFYMEPQFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYE*********
Disordered Region (DISPRO)
MNFYMEPQFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLK**RMH*******KSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAL*A
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFYMEPQFNETTLGPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFILEGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q962R6	151	40S ribosomal protein S13	N/A	N/A	0.473	1.0	0.887	2e-74
Q8I7U0	151	40S ribosomal protein S13	N/A	N/A	0.473	1.0	0.880	1e-73
Q8MUR2	151	40S ribosomal protein S13	N/A	N/A	0.473	1.0	0.880	2e-73
P62278	151	40S ribosomal protein S13	yes	N/A	0.473	1.0	0.860	6e-73
P62301	151	40S ribosomal protein S13	yes	N/A	0.473	1.0	0.860	6e-73
P62277	151	40S ribosomal protein S13	yes	N/A	0.473	1.0	0.860	6e-73
Q6ITC7	151	40S ribosomal protein S13	yes	N/A	0.473	1.0	0.860	6e-73
Q56JX8	151	40S ribosomal protein S13	yes	N/A	0.473	1.0	0.860	6e-73
P49393	151	40S ribosomal protein S13	N/A	N/A	0.473	1.0	0.854	1e-72
Q9WVH0	151	40S ribosomal protein S13	yes	N/A	0.473	1.0	0.854	3e-72

>sp|Q962R6|RS13_SPOFR 40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3

 Score =  279 bits (714), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WLKLT++DVK+ IFKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+RKHLER+RKDKDSKFRLILVES
Sbjct: 61  AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Spodoptera frugiperda (taxid: 7108)

>sp|Q8I7U0|RS13_PLUXY 40S ribosomal protein S13 OS=Plutella xylostella GN=RpS13 PE=2 SV=3

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 144/151 (95%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WLKLT++DVK+ IFKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+ KHLER+RKDKDSKFRLILVES
Sbjct: 61  AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMGKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Plutella xylostella (taxid: 51655)

>sp|Q8MUR2|RS13_CHOPR 40S ribosomal protein S13 OS=Choristoneura parallela GN=RpS13 PE=2 SV=3

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 143/151 (94%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WLKLT++DVK+ IFKL KKGLTPSQIGV LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVKLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
            QVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+RKHLER+RKDKDSKFRLILVES
Sbjct: 61  VQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Choristoneura parallela (taxid: 106495)

>sp|P62278|RS13_RAT 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

Rattus norvegicus (taxid: 10116)

>sp|P62301|RS13_MOUSE 40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

Mus musculus (taxid: 10090)

>sp|P62277|RS13_HUMAN 40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

Homo sapiens (taxid: 9606)

>sp|Q6ITC7|RS13_CHICK 40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

Gallus gallus (taxid: 9031)

>sp|Q56JX8|RS13_BOVIN 40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

Bos taurus (taxid: 9913)

>sp|P49393|RS13_XENLA 40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/151 (85%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKT+ VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTRRVLPPNWKYESSTASALVA 151

Xenopus laevis (taxid: 8355)

>sp|Q9WVH0|RS13_CRIGR 40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/151 (85%), Positives = 144/151 (95%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKG+S+SALPYRRSVP WLKL S+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLASDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

Cricetulus griseus (taxid: 10029)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
110671484	151	putative ribosomal protein S13e [Diaphor	0.473	1.0	1.0	2e-81
70909531	151	ribosomal protein S13e [Georissus sp. AP	0.473	1.0	0.894	3e-73
54039367	151	RecName: Full=40S ribosomal protein S13	0.473	1.0	0.887	1e-72
148298648	151	ribosomal protein S13 [Bombyx mori] gi|5	0.473	1.0	0.880	2e-72
268306426	151	ribosomal protein S13 [Manduca sexta]	0.473	1.0	0.880	2e-72
229487386	151	40S ribosomal protein S13 [Heliconius me	0.473	1.0	0.880	2e-72
70909527	151	ribosomal protein S13e [Agriotes lineatu	0.473	1.0	0.900	3e-72
50344486	151	S13e ribosomal protein [Timarcha baleari	0.473	1.0	0.887	4e-72
264667323	151	ribosomal protein S13 [Chrysomela tremul	0.473	1.0	0.887	4e-72
49532880	151	Ribosomal protein S13 [Plutella xylostel	0.473	1.0	0.880	5e-72

>gi|110671484|gb|ABG81993.1| putative ribosomal protein S13e [Diaphorina citri]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES
Sbjct: 61  AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTKAVLPPNWKYESATASALVA
Sbjct: 121 RIHRLARYYKTKAVLPPNWKYESATASALVA 151

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909531|emb|CAJ17188.1| ribosomal protein S13e [Georissus sp. APV-2005]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGI++SALPYRR+VP WLKL+ EDVKDHI+KL KKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGIAQSALPYRRTVPTWLKLSPEDVKDHIYKLGKKGLTPSQIGVILRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRIMKAMGLAP+LPEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct: 61  AQVRFVTGNKILRIMKAMGLAPDLPEDLYYLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VL PNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLAPNWKYESSTASALVA 151

Source: Georissus sp. APV-2005

Species: Georissus sp. APV-2005

Genus: Georissus

Family: Georissidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|54039367|sp|Q962R6.3|RS13_SPOFR RecName: Full=40S ribosomal protein S13 gi|15213814|gb|AAK92182.1|AF400210_1 ribosomal protein S13 [Spodoptera frugiperda] gi|315115337|gb|ADT80641.1| ribosomal protein S13 [Euphydryas aurinia] gi|357624580|gb|EHJ75304.1| 40S ribosomal protein S13 [Danaus plexippus] gi|389608275|dbj|BAM17749.1| ribosomal protein S13 [Papilio xuthus] gi|389611129|dbj|BAM19175.1| ribosomal protein S13 [Papilio polytes]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WLKLT++DVK+ IFKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+RKHLER+RKDKDSKFRLILVES
Sbjct: 61  AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148298648|ref|NP_001091754.1| ribosomal protein S13 [Bombyx mori] gi|54609309|gb|AAV34870.1| ribosomal protein S13 [Bombyx mori]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WLKLT++DVK+ I+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+RKHLER+RKDKDSKFRLILVES
Sbjct: 61  AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|268306426|gb|ACY95334.1| ribosomal protein S13 [Manduca sexta]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WLKLT++DVK+ IFKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+RKHLER+RKD+DSKFRLILVES
Sbjct: 61  AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDRDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229487386|emb|CAY54153.1| 40S ribosomal protein S13 [Heliconius melpomene] gi|229487395|emb|CAY54171.1| 40S ribosomal protein S13 [Heliconius melpomene] gi|342356323|gb|AEL28820.1| ribosomal protein S13 [Heliconius melpomene cythera] gi|443429457|gb|AGC92741.1| 40S ribosomal protein S13-like protein [Heliconius erato]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WL+LT++DVK+ IFKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLRLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+RKHLER+RKDKDSKFRLILVES
Sbjct: 61  AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Source: Heliconius melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909527|emb|CAJ17186.1| ribosomal protein S13e [Agriotes lineatus]

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 136/151 (90%), Positives = 142/151 (94%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGI++SALPYRRSVP WLKLT EDVKDHIFKL KKGLTPSQIGVILRDS GV
Sbjct: 1   MGRMHAPGKGIAQSALPYRRSVPTWLKLTPEDVKDHIFKLGKKGLTPSQIGVILRDSLGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+GNKILRIMKAMGLAP+LPEDLY LIKKAVAIRKHLER+RKDKD KFRLILVES
Sbjct: 61  AQVRFVTGNKILRIMKAMGLAPDLPEDLYYLIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK VL PNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKGVLAPNWKYESSTASALVA 151

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|50344486|emb|CAH04329.1| S13e ribosomal protein [Timarcha balearica]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 144/151 (95%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGI++SALPYRRSVP WLK+T E+VKDHI+KL KKGLTPSQIGVILRDS+GV
Sbjct: 1   MGRMHAPGKGIAQSALPYRRSVPTWLKVTPEEVKDHIYKLGKKGLTPSQIGVILRDSYGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQ RFVSGNKILRIMKAMGLAP+LPEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct: 61  AQARFVSGNKILRIMKAMGLAPDLPEDLYYLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VL PNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLAPNWKYESSTASALVA 151

Source: Timarcha balearica

Species: Timarcha balearica

Genus: Timarcha

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667323|gb|ACY71247.1| ribosomal protein S13 [Chrysomela tremula]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 145/151 (96%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGI++SALPYRRSVP WLK+T E+VK+HIFKL KKGLTPSQIGVILRDS+GV
Sbjct: 1   MGRMHAPGKGIAQSALPYRRSVPTWLKVTPEEVKEHIFKLGKKGLTPSQIGVILRDSYGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFVSGNKILRIMKAMGLAP+LPEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct: 61  AQVRFVSGNKILRIMKAMGLAPDLPEDLYYLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VL PNWKYES+TASALV+
Sbjct: 121 RIHRLARYYKTKSVLAPNWKYESSTASALVS 151

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|49532880|dbj|BAD26675.1| Ribosomal protein S13 [Plutella xylostella]

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/151 (88%), Positives = 144/151 (95%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH PGKGIS+SALPYRRSVP WLKLT++DVK+ IFKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQVRFV+G KILRIMKAMGLAP+LPEDLY LIKKAVA+RKHLE +RKDKDSKFRLILVES
Sbjct: 61  AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLEPTRKDKDSKFRLILVES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

Source: Plutella xylostella

Species: Plutella xylostella

Genus: Plutella

Family: Plutellidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
UNIPROTKB|Q6ITC7	151	RPS13 "40S ribosomal protein S	0.473	1.0	0.860	1.9e-67
UNIPROTKB|Q56JX8	151	RPS13 "40S ribosomal protein S	0.473	1.0	0.860	1.9e-67
UNIPROTKB|P62277	151	RPS13 "40S ribosomal protein S	0.473	1.0	0.860	1.9e-67
RGD|621027	151	Rps13 "ribosomal protein S13"	0.473	1.0	0.860	1.9e-67
ZFIN|ZDB-GENE-040625-52	151	rps13 "ribosomal protein S13"	0.473	1.0	0.860	1.1e-66
UNIPROTKB|F6Q5P0	153	RPS13 "40S ribosomal protein S	0.473	0.986	0.849	2.8e-66
UNIPROTKB|E1BGR6	151	E1BGR6 "Uncharacterized protei	0.470	0.993	0.846	9.4e-66
FB|FBgn0010265	151	RpS13 "Ribosomal protein S13"	0.473	1.0	0.834	3.2e-65
WB|WBGene00004482	151	rps-13 [Caenorhabditis elegans	0.473	1.0	0.761	1.3e-59
TAIR|locus:2126936	151	RPS13A "ribosomal protein S13A	0.473	1.0	0.781	3.2e-58

UNIPROTKB|Q6ITC7 RPS13 "40S ribosomal protein S13" [Gallus gallus (taxid:9031)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct:     1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct:    61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct:   121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

UNIPROTKB|Q56JX8 RPS13 "40S ribosomal protein S13" [Bos taurus (taxid:9913)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct:     1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct:    61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct:   121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62277 RPS13 "40S ribosomal protein S13" [Homo sapiens (taxid:9606)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct:     1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct:    61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct:   121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0003729 "mRNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0033119 "negative regulation of RNA splicing" evidence=IDA

GO:0005840 "ribosome" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

RGD|621027 Rps13 "ribosomal protein S13" [Rattus norvegicus (taxid:10116)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 130/151 (86%), Positives = 145/151 (96%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct:     1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct:    61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct:   121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151

GO:0003674 "molecular_function" evidence=ND

GO:0003729 "mRNA binding" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0033119 "negative regulation of RNA splicing" evidence=ISO

ZFIN|ZDB-GENE-040625-52 rps13 "ribosomal protein S13" [Danio rerio (taxid:7955)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 130/151 (86%), Positives = 144/151 (95%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGKG+S+SALPYRRSVP WLKLTS+DVK+ IFKL+KKGLTPSQIGVILRDSHGV
Sbjct:     1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLILVES
Sbjct:    61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYKT+ VL PNWKYES+TASALVA
Sbjct:   121 RIHRLARYYKTRRVLAPNWKYESSTASALVA 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F6Q5P0 RPS13 "40S ribosomal protein S13" [Sus scrofa (taxid:9823)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 130/153 (84%), Positives = 145/153 (94%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPN--WLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSH 226
             MGRMH PGKG+S+SALPYRRSVP   WLKLTS+DVK+ I+KL+KKGLTPSQIGVILRDSH
Sbjct:     1 MGRMHAPGKGLSQSALPYRRSVPTKQWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSH 60

Query:   227 GVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILV 286
             GVAQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+
Sbjct:    61 GVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILI 120

Query:   287 ESRIHRLARYYKTKAVLPPNWKYESATASALVA 319
             ESRIHRLARYYKTK VLPPNWKYES+TASALVA
Sbjct:   121 ESRIHRLARYYKTKRVLPPNWKYESSTASALVA 153

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E1BGR6 E1BGR6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 127/150 (84%), Positives = 142/150 (94%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGK +S+SALPYRRSVP WLKLT +DVK+ I+KL+KKGLTPSQIGVILRDSHGV
Sbjct:     1 MGRMHAPGKDLSQSALPYRRSVPTWLKLTCDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             AQVRFV+GNKILRI+K+ GLAP+LPEDLY LIKKAVA+RKHLER+RKDKD+KFRLIL+ES
Sbjct:    61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALV 318
             RIHRLARYYKTK VLPPNWKYES+TASALV
Sbjct:   121 RIHRLARYYKTKRVLPPNWKYESSTASALV 150

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

FB|FBgn0010265 RpS13 "Ribosomal protein S13" [Drosophila melanogaster (taxid:7227)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 126/151 (83%), Positives = 143/151 (94%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGKGIS+SALPYRR+VP+WLKL ++DVK+ I KL KKGLTPS+IG+ILRDSHGV
Sbjct:     1 MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             AQVRFV+GNKILRIMK++GL P++PEDLY +IKKAVAIRKHLER+RKDKD KFRLILVES
Sbjct:    61 AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYKTK+VLPPNWKYES+TASALVA
Sbjct:   121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

WB|WBGene00004482 rps-13 [Caenorhabditis elegans (taxid:6239)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 115/151 (76%), Positives = 135/151 (89%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH PGKG++KSA+PYRRSVP+W K+T+E+V+D I K++KKGL PSQIGVILRDSHGV
Sbjct:     1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
              QVR ++GNKI RI+K+ G+AP LPEDLY L+KKAVAIRKHLERSRKD DSK+RLILVES
Sbjct:    61 GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYKTK  LPP WKYES TA++LV+
Sbjct:   121 RIHRLARYYKTKRQLPPTWKYESGTAASLVS 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

TAIR|locus:2126936 RPS13A "ribosomal protein S13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 118/151 (78%), Positives = 131/151 (86%)

Query:   169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
             MGRMH+ GKGIS SALPY+RS P+WLK TS+DV + I K +KKGLTPSQIGVILRDSHG+
Sbjct:     1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query:   229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
              QV+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct:    61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query:   289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
             RIHRLARYYK    LPP WKYES TAS LVA
Sbjct:   121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0000911 "cytokinesis by cell plate formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA;NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05756	RS13_YEAST	No assigned EC number	0.74	0.4702	0.9933	yes	N/A
Q03334	RS13_DROME	No assigned EC number	0.8344	0.4733	1.0	yes	N/A
P62301	RS13_MOUSE	No assigned EC number	0.8609	0.4733	1.0	yes	N/A
P62302	RS13_SOYBN	No assigned EC number	0.7682	0.4733	1.0	yes	N/A
Q69UI2	RS131_ORYSJ	No assigned EC number	0.7152	0.4733	1.0	yes	N/A
P59223	RS131_ARATH	No assigned EC number	0.7748	0.4733	1.0	yes	N/A
P59224	RS132_ARATH	No assigned EC number	0.7814	0.4733	1.0	yes	N/A
P28189	RS13_SCHPO	No assigned EC number	0.7284	0.4733	1.0	yes	N/A
Q9WVH0	RS13_CRIGR	No assigned EC number	0.8543	0.4733	1.0	yes	N/A
Q56JX8	RS13_BOVIN	No assigned EC number	0.8609	0.4733	1.0	yes	N/A
Q6ITC7	RS13_CHICK	No assigned EC number	0.8609	0.4733	1.0	yes	N/A
Q8I7D6	RS13_CIOIN	No assigned EC number	0.8410	0.4733	1.0	yes	N/A
Q69UI1	RS132_ORYSJ	No assigned EC number	0.7284	0.4733	1.0	yes	N/A
P52811	RS13_ANOGA	No assigned EC number	0.8476	0.4733	1.0	yes	N/A
Q54PH8	RS13_DICDI	No assigned EC number	0.6357	0.4733	1.0	yes	N/A
P62277	RS13_HUMAN	No assigned EC number	0.8609	0.4733	1.0	yes	N/A
P51404	RS13_CAEEL	No assigned EC number	0.7615	0.4733	1.0	yes	N/A
P62278	RS13_RAT	No assigned EC number	0.8609	0.4733	1.0	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	319
PTZ00072	148	PTZ00072, PTZ00072, 40S ribosomal protein S13; Pro	2e-94
PTZ00072	148	PTZ00072, PTZ00072, 40S ribosomal protein S13; Pro	4e-61
PRK08561	151	PRK08561, rps15p, 30S ribosomal protein S15P; Revi	2e-57
PRK08561	151	PRK08561, rps15p, 30S ribosomal protein S15P; Revi	8e-35
pfam08069	60	pfam08069, Ribosomal_S13_N, Ribosomal S13/S15 N-te	7e-32
cd00353	80	cd00353, Ribosomal_S15p_S13e, Ribosomal protein S1	3e-23
cd00353	80	cd00353, Ribosomal_S15p_S13e, Ribosomal protein S1	3e-23
COG0184	89	COG0184, RpsO, Ribosomal protein S15P/S13E [Transl	2e-22
COG0184	89	COG0184, RpsO, Ribosomal protein S15P/S13E [Transl	2e-19
pfam00312	83	pfam00312, Ribosomal_S15, Ribosomal protein S15	2e-19
pfam00312	83	pfam00312, Ribosomal_S15, Ribosomal protein S15	4e-19
cd00677	46	cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-b	6e-11
cd00677	46	cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-b	6e-11

>gnl|CDD|185427 PTZ00072, PTZ00072, 40S ribosomal protein S13; Provisional

 Score =  276 bits (707), Expect = 2e-94
 Identities = 113/148 (76%), Positives = 129/148 (87%)

Query: 172 MHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQV 231
           M+  GKGIS SALPYRR  P+WLKL+S +V+D I KL+KKGLTPSQIGVILRDS G+ QV
Sbjct: 1   MYGKGKGISSSALPYRRKPPSWLKLSSSEVEDQICKLAKKGLTPSQIGVILRDSMGIPQV 60

Query: 232 RFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIH 291
           + V+G+KILRI+K  GLAP +PEDLY LIKKAV+IRKHLE++RKDKDSKFRLILVESRIH
Sbjct: 61  KNVTGSKILRILKKNGLAPEIPEDLYFLIKKAVSIRKHLEKNRKDKDSKFRLILVESRIH 120

Query: 292 RLARYYKTKAVLPPNWKYESATASALVA 319
           RLARYYK    LPPNWKYES+TASALVA
Sbjct: 121 RLARYYKRTKQLPPNWKYESSTASALVA 148

Length = 148

>gnl|CDD|185427 PTZ00072, PTZ00072, 40S ribosomal protein S13; Provisional

 Score =  191 bits (486), Expect = 4e-61
 Identities = 76/99 (76%), Positives = 87/99 (87%)

Query: 37  VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
           VILRDS G+ QV+ V+G+KILRI+K  GLAP +PEDLY LIKKAV+IRKHLE++RKDKDS
Sbjct: 49  VILRDSMGIPQVKNVTGSKILRILKKNGLAPEIPEDLYFLIKKAVSIRKHLEKNRKDKDS 108

Query: 97  KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
           KFRLILVESRIHRLARYYK    LPPNWKYES+TASA +
Sbjct: 109 KFRLILVESRIHRLARYYKRTKQLPPNWKYESSTASALV 147

Length = 148

>gnl|CDD|236287 PRK08561, rps15p, 30S ribosomal protein S15P; Reviewed

 Score =  181 bits (463), Expect = 2e-57
 Identities = 71/151 (47%), Positives = 101/151 (66%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           M RMHT  +G S S  P R   P W+  + E++++ + +L+K+G +PS IG+ILRD +G+
Sbjct: 1   MARMHTRRRGKSGSTRPARTEPPEWVDYSPEEIEELVVELAKQGYSPSMIGIILRDQYGI 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             V+ ++G KI  I++  GLAP +PEDL  LIKKAV +RKHLE + KD  +K  L L+ES
Sbjct: 61  PDVKLITGKKITEILEENGLAPEIPEDLRNLIKKAVNLRKHLEENPKDLHNKRGLQLIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           +I RL +YYK   VLP +W+Y   TA  LV+
Sbjct: 121 KIRRLVKYYKRTGVLPADWRYSPETAELLVS 151

Length = 151

>gnl|CDD|236287 PRK08561, rps15p, 30S ribosomal protein S15P; Reviewed

 Score =  123 bits (312), Expect = 8e-35
 Identities = 49/95 (51%), Positives = 66/95 (69%)

Query: 37  VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
           +ILRD +G+  V+ ++G KI  I++  GLAP +PEDL  LIKKAV +RKHLE + KD  +
Sbjct: 52  IILRDQYGIPDVKLITGKKITEILEENGLAPEIPEDLRNLIKKAVNLRKHLEENPKDLHN 111

Query: 97  KFRLILVESRIHRLARYYKTKAVLPPNWKYESATA 131
           K  L L+ES+I RL +YYK   VLP +W+Y   TA
Sbjct: 112 KRGLQLIESKIRRLVKYYKRTGVLPADWRYSPETA 146

Length = 151

>gnl|CDD|191937 pfam08069, Ribosomal_S13_N, Ribosomal S13/S15 N-terminal domain

 Score =  113 bits (284), Expect = 7e-32
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           M RMH+ GKGIS SA PYRR+ P WLK + E+V++ I KL+KKGLTPSQIGVILRD +G+
Sbjct: 1   MARMHSRGKGISGSARPYRRTPPEWLKYSPEEVEELIVKLAKKGLTPSQIGVILRDQYGI 60

This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021. Length = 60

>gnl|CDD|238213 cd00353, Ribosomal_S15p_S13e, Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

 Score = 90.6 bits (226), Expect = 3e-23
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 55  KILRIMKAMGLAPN----LPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 110
           K   I+K  GLA          L  L ++ V + +HLE+++KDK SK  L+L+ S+  RL
Sbjct: 1   KKQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRL 60

Query: 111 ARYYKTKAVLPPNWKYESAT 130
            +Y K K  L   W  E   
Sbjct: 61  LKYLKRKDRLRYEWLIEKLG 80

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix. Length = 80

>gnl|CDD|238213 cd00353, Ribosomal_S15p_S13e, Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

 Score = 90.6 bits (226), Expect = 3e-23
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 238 KILRIMKAMGLAPN----LPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
           K   I+K  GLA          L  L ++ V + +HLE+++KDK SK  L+L+ S+  RL
Sbjct: 1   KKQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRL 60

Query: 294 ARYYKTKAVLPPNWKYESAT 313
            +Y K K  L   W  E   
Sbjct: 61  LKYLKRKDRLRYEWLIEKLG 80

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix. Length = 80

>gnl|CDD|223262 COG0184, RpsO, Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 212 GLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLE 271
               S+I   LRD +G+ +V   SG                   L  L ++   + +HL+
Sbjct: 1   MSLTSEIKQELRDEYGIPEVDTGSG----------------EVQLALLTERINNLTEHLK 44

Query: 272 RSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATAS 315
             +KD  S+  L+L+ S+  RL +Y K K VL   W  +     
Sbjct: 45  EHKKDHHSRRGLLLLVSKRRRLLKYLKRKDVLRYRWLIKKLGLR 88

Length = 89

>gnl|CDD|223262 COG0184, RpsO, Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

 Score = 81.1 bits (201), Expect = 2e-19
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 16/95 (16%)

Query: 38  ILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSK 97
            LRD +G+ +V   SG                   L  L ++   + +HL+  +KD  S+
Sbjct: 10  ELRDEYGIPEVDTGSG----------------EVQLALLTERINNLTEHLKEHKKDHHSR 53

Query: 98  FRLILVESRIHRLARYYKTKAVLPPNWKYESATAS 132
             L+L+ S+  RL +Y K K VL   W  +     
Sbjct: 54  RGLLLLVSKRRRLLKYLKRKDVLRYRWLIKKLGLR 88

Length = 89

>gnl|CDD|109373 pfam00312, Ribosomal_S15, Ribosomal protein S15

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
            +G  I   +KA     ++   +  L ++ V +RKHLE  +KD  SK  LI + S+  RL
Sbjct: 2   ATGLIISEFLKAEKDTGSVEVQIALLTERIVRLRKHLEEHKKDYHSKRGLIKMVSKRRRL 61

Query: 294 ARYYKTKAVLPPNWKYESATASALV 318
             Y K K       +YE+      +
Sbjct: 62  LAYLKKKDT----ARYENLIEQLGL 82

Length = 83

>gnl|CDD|109373 pfam00312, Ribosomal_S15, Ribosomal protein S15

 Score = 80.1 bits (198), Expect = 4e-19
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 51  VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 110
            +G  I   +KA     ++   +  L ++ V +RKHLE  +KD  SK  LI + S+  RL
Sbjct: 2   ATGLIISEFLKAEKDTGSVEVQIALLTERIVRLRKHLEEHKKDYHSKRGLIKMVSKRRRL 61

Query: 111 ARYYKTKAVLPPNWKYESATASAFI 135
             Y K K       +YE+      +
Sbjct: 62  LAYLKKKDT----ARYENLIEQLGL 82

Length = 83

>gnl|CDD|238361 cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-binding domain

 Score = 56.4 bits (137), Expect = 6e-11
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 70  PEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYK 115
              +  L ++   +++HL +++KDK SK  L L+ S+  RL +Y K
Sbjct: 1   EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism. Length = 46

>gnl|CDD|238361 cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-binding domain

 Score = 56.4 bits (137), Expect = 6e-11
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 253 PEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYK 298
              +  L ++   +++HL +++KDK SK  L L+ S+  RL +Y K
Sbjct: 1   EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
PTZ00072	148	40S ribosomal protein S13; Provisional	100.0
PRK08561	151	rps15p 30S ribosomal protein S15P; Reviewed	100.0
KOG0400|consensus	151		100.0
PTZ00072	148	40S ribosomal protein S13; Provisional	100.0
KOG0400|consensus	151		100.0
PRK08561	151	rps15p 30S ribosomal protein S15P; Reviewed	100.0
PF08069	60	Ribosomal_S13_N: Ribosomal S13/S15 N-terminal doma	99.98
COG0184	89	RpsO Ribosomal protein S15P/S13E [Translation, rib	99.91
COG0184	89	RpsO Ribosomal protein S15P/S13E [Translation, rib	99.87
cd00353	80	Ribosomal_S15p_S13e Ribosomal protein S15 (prokary	99.45
PF00312	83	Ribosomal_S15: Ribosomal protein S15; InterPro: IP	99.45
PF00312	83	Ribosomal_S15: Ribosomal protein S15; InterPro: IP	99.43
cd00353	80	Ribosomal_S15p_S13e Ribosomal protein S15 (prokary	99.43
cd00677	46	S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding dom	98.84
cd00677	46	S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding dom	98.81
PF08069	60	Ribosomal_S13_N: Ribosomal S13/S15 N-terminal doma	98.64
TIGR00952	86	S15_bact ribosomal protein S15, bacterial/organell	96.62
TIGR00952	86	S15_bact ribosomal protein S15, bacterial/organell	96.61
CHL00027	90	rps15 ribosomal protein S15	96.4
PRK05626	89	rpsO 30S ribosomal protein S15; Reviewed	96.32
CHL00027	90	rps15 ribosomal protein S15	96.32
PRK05626	89	rpsO 30S ribosomal protein S15; Reviewed	96.28
PTZ00119	302	40S ribosomal protein S15; Provisional	95.49
PTZ00119	302	40S ribosomal protein S15; Provisional	95.37
COG2257	92	Uncharacterized homolog of the cytoplasmic domain	93.52
COG2257	92	Uncharacterized homolog of the cytoplasmic domain	85.2
PF13565	77	HTH_32: Homeodomain-like domain	80.94
TIGR00789	82	flhB_rel flhB C-terminus-related protein. This mod	80.7

>PTZ00072 40S ribosomal protein S13; Provisional

Probab=100.00  E-value=7e-78  Score=519.68  Aligned_cols=148  Identities=76%  Similarity=1.159  Sum_probs=147.2

Q ss_pred             cCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCC
Q psy7749         172 MHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPN  251 (319)
Q Consensus       172 Mhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlape  251 (319)
                      ||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++|||||||||||.|||+||++||++||+||+
T Consensus         1 Mhs~gkG~S~S~~P~~r~~P~w~~~~~eeVe~~I~klaKkG~~pSqIG~iLRD~~gi~~vk~vtG~kI~rILk~~Glap~   80 (148)
T PTZ00072          1 MYGKGKGISSSALPYRRKPPSWLKLSSSEVEDQICKLAKKGLTPSQIGVILRDSMGIPQVKNVTGSKILRILKKNGLAPE   80 (148)
T ss_pred             CCCCCCCCCCCCCCCCCCCCchhcCCHHHHHHHHHHHHHCCCCHhHhhhhhhhccCccceeeccchHHHHHHHhcCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749         252 LPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA  319 (319)
Q Consensus       252 IPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~  319 (319)
                      ||||||+||||||+||||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus        81 iPeDly~LikKAv~iRkHLe~n~kD~~sK~~LiLiESkI~RL~rYYk~~~~lP~~WkY~~~tA~~Lv~  148 (148)
T PTZ00072         81 IPEDLYFLIKKAVSIRKHLEKNRKDKDSKFRLILVESRIHRLARYYKRTKQLPPNWKYESSTASALVA  148 (148)
T ss_pred             CchHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCcCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999985

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed

Probab=100.00  E-value=1.5e-74  Score=501.19  Aligned_cols=151  Identities=47%  Similarity=0.836  Sum_probs=150.2

Q ss_pred             hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749         169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL  248 (319)
Q Consensus       169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl  248 (319)
                      |||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||.|||+||++||++||+
T Consensus         1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~I~~lakkG~~pSqIG~~LRD~~gip~Vk~vtG~ki~~iLk~~gl   80 (151)
T PRK08561          1 MARMHTRRRGKSGSTRPARTEPPEWVDYSPEEIEELVVELAKQGYSPSMIGIILRDQYGIPDVKLITGKKITEILEENGL   80 (151)
T ss_pred             CCCcCCCCCCCCCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhhHhhccCCCceeeeccchHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749         249 APNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA  319 (319)
Q Consensus       249 apeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~  319 (319)
                      +|+|||||||||+||++|++||+.|+||+||||+|+++|||+|||++||+++++||+||+|+|+||++||+
T Consensus        81 ~p~iPEDL~~L~~ri~~L~~HL~~nkKD~~skRgL~~~~skrrRLl~Yyk~~~~LP~~WkY~~~~A~~lv~  151 (151)
T PRK08561         81 APEIPEDLRNLIKKAVNLRKHLEENPKDLHNKRGLQLIESKIRRLVKYYKRTGVLPADWRYSPETAELLVS  151 (151)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>KOG0400|consensus

Probab=100.00  E-value=3.2e-74  Score=493.11  Aligned_cols=151  Identities=86%  Similarity=1.329  Sum_probs=150.2

Q ss_pred             hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749         169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL  248 (319)
Q Consensus       169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl  248 (319)
                      |||||++|||+|+|++||++++|+|+++++|||.|+|++|||||+||||||++|||+||||+|+.|||+||+|||+.||+
T Consensus         1 MgrMHs~GKGis~SAlPY~r~~PtWlK~~~ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~v~G~kI~Rilk~~Gl   80 (151)
T KOG0400|consen    1 MGRMHSPGKGISGSALPYRRSVPTWLKLTADDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRFVTGNKILRILKSNGL   80 (151)
T ss_pred             CCcccCCCcccccCccccccCCcHHHhcCHHHHHHHHHHHHHcCCChhHceeeeecccCcchhheechhHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749         249 APNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA  319 (319)
Q Consensus       249 apeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~  319 (319)
                      +||||||||+||+|||++|||||+|+||+|+|||||||||||||||||||++++||+||||++.||+.||+
T Consensus        81 ~PeiPeDLy~likkAv~iRkHLer~RKD~d~K~RLILveSRihRlARYYk~~~~lPp~WKyes~tas~lv~  151 (151)
T KOG0400|consen   81 APEIPEDLYHLIKKAVAIRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKMVLPPNWKYESATASALVA  151 (151)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhccccccceEEEeehHHHHHHHHHHHhcccCCCCCCcchhhHhhhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986

>PTZ00072 40S ribosomal protein S13; Provisional

Probab=100.00  E-value=9.9e-58  Score=394.50  Aligned_cols=125  Identities=65%  Similarity=1.002  Sum_probs=120.8

Q ss_pred             CCCCCCceeecc-----cccccccchh---hhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q psy7749          12 TTLGPNWFIKSG-----FYCNLKTDIV---LFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAI   83 (319)
Q Consensus        12 ~~~~p~w~~~s~-----~~~~~~~~~~---~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~l   83 (319)
                      .+.+|+|++.|+     .+|++++++.   |||++|||||||||||.|||+||++||++||+||+||||||+||||||+|
T Consensus        16 ~r~~P~w~~~~~eeVe~~I~klaKkG~~pSqIG~iLRD~~gi~~vk~vtG~kI~rILk~~Glap~iPeDly~LikKAv~i   95 (148)
T PTZ00072         16 RRKPPSWLKLSSSEVEDQICKLAKKGLTPSQIGVILRDSMGIPQVKNVTGSKILRILKKNGLAPEIPEDLYFLIKKAVSI   95 (148)
T ss_pred             CCCCCchhcCCHHHHHHHHHHHHHCCCCHhHhhhhhhhccCccceeeccchHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Confidence            467999999988     7888888885   99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHh
Q psy7749          84 RKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL  136 (319)
Q Consensus        84 RkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  136 (319)
                      |||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus        96 RkHLe~n~kD~~sK~~LiLiESkI~RL~rYYk~~~~lP~~WkY~~~tA~~Lv~  148 (148)
T PTZ00072         96 RKHLEKNRKDKDSKFRLILVESRIHRLARYYKRTKQLPPNWKYESSTASALVA  148 (148)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCcCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999985

>KOG0400|consensus

Probab=100.00  E-value=2.6e-53  Score=364.30  Aligned_cols=125  Identities=70%  Similarity=1.055  Sum_probs=118.1

Q ss_pred             CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q psy7749          12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAI   83 (319)
Q Consensus        12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~l   83 (319)
                      .+.+|+||+.++     .++++++++   +|||++|||+||||+|++|||+||+|||+.||++|+||||||+||+|||++
T Consensus        19 ~r~~PtWlK~~~ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~v~G~kI~Rilk~~Gl~PeiPeDLy~likkAv~i   98 (151)
T KOG0400|consen   19 RRSVPTWLKLTADDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRFVTGNKILRILKSNGLAPEIPEDLYHLIKKAVAI   98 (151)
T ss_pred             ccCCcHHHhcCHHHHHHHHHHHHHcCCChhHceeeeecccCcchhheechhHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence            478999999988     455555555   489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHh
Q psy7749          84 RKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL  136 (319)
Q Consensus        84 RkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  136 (319)
                      |||||+|+||+|+||||||||||||||+||||++.+||+||||++.||++||+
T Consensus        99 RkHLer~RKD~d~K~RLILveSRihRlARYYk~~~~lPp~WKyes~tas~lv~  151 (151)
T KOG0400|consen   99 RKHLERNRKDKDAKFRLILVESRIHRLARYYKTKMVLPPNWKYESATASALVA  151 (151)
T ss_pred             HHHHHHhccccccceEEEeehHHHHHHHHHHHhcccCCCCCCcchhhHhhhhC
Confidence            99999999999999999999999999999999999999999999999999985

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed

Probab=100.00  E-value=6.9e-52  Score=359.74  Aligned_cols=125  Identities=43%  Similarity=0.730  Sum_probs=120.5

Q ss_pred             CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q psy7749          12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAI   83 (319)
Q Consensus        12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~l   83 (319)
                      .+.+|+|++.|+     .+|++++++   +|||++||||||||+||.|||+||++||++||++|+|||||||||+||++|
T Consensus        19 ~~~~P~W~~~~~eeve~~I~~lakkG~~pSqIG~~LRD~~gip~Vk~vtG~ki~~iLk~~gl~p~iPEDL~~L~~ri~~L   98 (151)
T PRK08561         19 RTEPPEWVDYSPEEIEELVVELAKQGYSPSMIGIILRDQYGIPDVKLITGKKITEILEENGLAPEIPEDLRNLIKKAVNL   98 (151)
T ss_pred             CCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhhHhhccCCCceeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence            568999999988     678888888   499999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHh
Q psy7749          84 RKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL  136 (319)
Q Consensus        84 RkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  136 (319)
                      ++||+.|+||+||||+|+++|||+|||++||+++++||+||+|+|++|++||+
T Consensus        99 ~~HL~~nkKD~~skRgL~~~~skrrRLl~Yyk~~~~LP~~WkY~~~~A~~lv~  151 (151)
T PRK08561         99 RKHLEENPKDLHNKRGLQLIESKIRRLVKYYKRTGVLPADWRYSPETAELLVS  151 (151)
T ss_pred             HHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999985

>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.98  E-value=7.9e-34  Score=214.76  Aligned_cols=60  Identities=68%  Similarity=1.114  Sum_probs=41.8

Q ss_pred             hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCC
Q psy7749         169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV  228 (319)
Q Consensus       169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GI  228 (319)
                      |||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++|||||||
T Consensus         1 M~RMh~~~kG~S~S~~P~~~~~P~W~~~~~~eVe~~I~klakkG~tpSqIG~iLRD~~GI   60 (60)
T PF08069_consen    1 MGRMHSRGKGISGSTRPYRRSPPSWLKYSPEEVEELIVKLAKKGLTPSQIGVILRDQYGI   60 (60)
T ss_dssp             ---TTSSS---------S-SS--TT--S-HHHHHHHHHHHCCTTHCHHHHHHHHHHSCTC
T ss_pred             CCCccCCCCCccCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHcCCCHHHhhhhhhhccCC
Confidence            999999999999999999999999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.

>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=5.5e-25  Score=177.53  Aligned_cols=88  Identities=31%  Similarity=0.403  Sum_probs=84.9

Q ss_pred             CCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhh
Q psy7749         212 GLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIH  291 (319)
Q Consensus       212 G~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~  291 (319)
                      |..|||||..|||+||+|.++..+|                |||+.+|+++|++|++|++.|+||.||||+|++++||++
T Consensus         1 m~~~~~~k~~l~~eyg~~~~dtgs~----------------evq~a~Lt~ri~~L~~Hlk~hkKD~~srRGL~~~vskrr   64 (89)
T COG0184           1 MSLTSEIKQELRDEYGIPEVDTGSG----------------EVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLVSKRR   64 (89)
T ss_pred             CCchHHHHHHHHHHhCCCCCCCCCc----------------HHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHH
Confidence            6789999999999999999999888                999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCcCCCCCccchhhhh
Q psy7749         292 RLARYYKTKAVLPPNWKYESATAS  315 (319)
Q Consensus       292 RL~rYYK~~~~LP~~WkY~~~tA~  315 (319)
                      ||++|||+++++|.+|.|++..++
T Consensus        65 rLl~Ylk~~~~~~y~~li~~l~lr   88 (89)
T COG0184          65 RLLKYLKRKDVLRYRWLIKKLGLR   88 (89)
T ss_pred             HHHHHHHhcCcchHHHHHHHhhcc
Confidence            999999999999999999987653

>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=7e-23  Score=165.36  Aligned_cols=83  Identities=30%  Similarity=0.405  Sum_probs=80.4

Q ss_pred             hhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHH
Q psy7749          33 VLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLAR  112 (319)
Q Consensus        33 ~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~r  112 (319)
                      ++||..|||+||+|.++..+|                |||+.+|+++|++|++|++.|+||.||||+|++++||++||++
T Consensus         5 ~~~k~~l~~eyg~~~~dtgs~----------------evq~a~Lt~ri~~L~~Hlk~hkKD~~srRGL~~~vskrrrLl~   68 (89)
T COG0184           5 SEIKQELRDEYGIPEVDTGSG----------------EVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLVSKRRRLLK   68 (89)
T ss_pred             HHHHHHHHHHhCCCCCCCCCc----------------HHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHH
Confidence            689999999999999999888                9999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcCCCCCccchHHH
Q psy7749         113 YYKTKAVLPPNWKYESATA  131 (319)
Q Consensus       113 YYk~~~~LP~~WkY~~~tA  131 (319)
                      |||+++++|.+|.|++..+
T Consensus        69 Ylk~~~~~~y~~li~~l~l   87 (89)
T COG0184          69 YLKRKDVLRYRWLIKKLGL   87 (89)
T ss_pred             HHHhcCcchHHHHHHHhhc
Confidence            9999999999999998765

>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

Probab=99.45  E-value=9.3e-14  Score=109.24  Aligned_cols=73  Identities=37%  Similarity=0.525  Sum_probs=69.6

Q ss_pred             HHHHHHHcCCC----CCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccch
Q psy7749         239 ILRIMKAMGLA----PNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYES  311 (319)
Q Consensus       239 I~~ILk~nGla----peIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~  311 (319)
                      +.+|+++.|..    +.+|+++..|..|+.+|++||+.|+||++|+++|+.++||.+||.+||++++..|-+|.|+.
T Consensus         2 ~~~i~~~~~~~~~DtGs~evQia~LT~rI~~L~~Hl~~~~KD~~~krgL~~lv~kRrrLL~YLk~~~~~~y~~~i~~   78 (80)
T cd00353           2 KQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEK   78 (80)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHccccchHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHh
Confidence            57899999988    89999999999999999999999999999999999999999999999999999999998764

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.

>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.45  E-value=4.5e-14  Score=111.52  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=76.3

Q ss_pred             eccchHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhh
Q psy7749         234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESAT  313 (319)
Q Consensus       234 vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~t  313 (319)
                      ++++.|.++++.+|-.+.+|+++..|..|+.+|++|++.|+||++|+++|..++||.+||.+||+++.    .|.|....
T Consensus         2 ~k~~~i~~~~~~~~dtgs~evqia~LT~rI~~L~~Hl~~~kkD~~skr~L~~lv~kRrrlL~YLrr~~----~~~Y~~~~   77 (83)
T PF00312_consen    2 RKQKSIKKFQRHPNDTGSPEVQIAILTERIRNLQEHLKKNKKDKHSKRGLLKLVSKRRRLLKYLRRKD----FERYEWVL   77 (83)
T ss_dssp             HHHHHHHHHSSSTTSSSSHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccceehhHHHHHHHHHHHHHHhCC----HHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999988    78999888


Q ss_pred             hhhhh
Q psy7749         314 ASALV  318 (319)
Q Consensus       314 A~~lv  318 (319)
                      +++-+
T Consensus        78 ~~Lgl   82 (83)
T PF00312_consen   78 KKLGL   82 (83)
T ss_dssp             HHHTT
T ss_pred             HHhCc
Confidence            87644

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....

>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.43  E-value=7.1e-14  Score=110.42  Aligned_cols=80  Identities=21%  Similarity=0.254  Sum_probs=75.5

Q ss_pred             eccchHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHH
Q psy7749          51 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESAT  130 (319)
Q Consensus        51 vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~t  130 (319)
                      ++++.|.++++++|-.+.+|+++..|..|+.+|++|++.|+||++|+++|..++||.+||.+||+++.    .|.|....
T Consensus         2 ~k~~~i~~~~~~~~dtgs~evqia~LT~rI~~L~~Hl~~~kkD~~skr~L~~lv~kRrrlL~YLrr~~----~~~Y~~~~   77 (83)
T PF00312_consen    2 RKQKSIKKFQRHPNDTGSPEVQIAILTERIRNLQEHLKKNKKDKHSKRGLLKLVSKRRRLLKYLRRKD----FERYEWVL   77 (83)
T ss_dssp             HHHHHHHHHSSSTTSSSSHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccceehhHHHHHHHHHHHHHHhCC----HHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999988    78898887


Q ss_pred             HHHH
Q psy7749         131 ASAF  134 (319)
Q Consensus       131 A~~l  134 (319)
                      +++-
T Consensus        78 ~~Lg   81 (83)
T PF00312_consen   78 KKLG   81 (83)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            7753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....

>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

Probab=99.43  E-value=1.7e-13  Score=107.82  Aligned_cols=73  Identities=37%  Similarity=0.525  Sum_probs=69.2

Q ss_pred             HHHHHHHcCCC----CCChhhHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccch
Q psy7749          56 ILRIMKAMGLA----PNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYES  128 (319)
Q Consensus        56 I~~ILk~nGla----peIPEDL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~  128 (319)
                      +.+|+++.|..    +.+|+++..|..|+.+|++||+.|+||++|+++|..++||.+||.+||++++..|-+|.|+.
T Consensus         2 ~~~i~~~~~~~~~DtGs~evQia~LT~rI~~L~~Hl~~~~KD~~~krgL~~lv~kRrrLL~YLk~~~~~~y~~~i~~   78 (80)
T cd00353           2 KQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEK   78 (80)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHccccchHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHh
Confidence            57889999988    89999999999999999999999999999999999999999999999999999999888764

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.

>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain

Probab=98.84  E-value=5.3e-09  Score=74.15  Aligned_cols=46  Identities=33%  Similarity=0.460  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHH
Q psy7749         253 PEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYK  298 (319)
Q Consensus       253 PEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK  298 (319)
                      |+++..|..++.++..|++.|+||+++|++|..++++++||.+||+
T Consensus         1 ~vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ylk   46 (46)
T cd00677           1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK   46 (46)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHhC
Confidence            6789999999999999999999999999999999999999999996

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.

>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain

Probab=98.81  E-value=7.2e-09  Score=73.50  Aligned_cols=46  Identities=33%  Similarity=0.460  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHH
Q psy7749          70 PEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYK  115 (319)
Q Consensus        70 PEDL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk  115 (319)
                      |+++..|..++.++..|++.|+||++++++|..++++++||.+||+
T Consensus         1 ~vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ylk   46 (46)
T cd00677           1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK   46 (46)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999999999999996

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.

>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.64  E-value=6.3e-09  Score=79.46  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=25.0

Q ss_pred             CCCCCCceeecc-----cccccccch---hhhhhhhccccCC
Q psy7749          12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGV   45 (319)
Q Consensus        12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GI   45 (319)
                      .+.+|+|++.|+     .+|++++++   +|||++|||||||
T Consensus        19 ~~~~P~W~~~~~~eVe~~I~klakkG~tpSqIG~iLRD~~GI   60 (60)
T PF08069_consen   19 RRSPPSWLKYSPEEVEELIVKLAKKGLTPSQIGVILRDQYGI   60 (60)
T ss_dssp             -SS--TT--S-HHHHHHHHHHHCCTTHCHHHHHHHHHHSCTC
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCCHHHhhhhhhhccCC
Confidence            567899999987     788888888   5999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.

>TIGR00952 S15_bact ribosomal protein S15, bacterial/organelle

Probab=96.62  E-value=0.004  Score=50.56  Aligned_cols=46  Identities=26%  Similarity=0.432  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         256 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       256 L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      ...|=.+-.+|..|++.|+||++|+++|.-.-+|=+||.+|-+++.
T Consensus        26 iA~LT~rI~~L~~Hl~~h~KD~~srrgL~~lv~kRkrlL~YL~~~d   71 (86)
T TIGR00952        26 IALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTD   71 (86)
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3456678889999999999999999999999999999999998864

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13.

>TIGR00952 S15_bact ribosomal protein S15, bacterial/organelle

Probab=96.61  E-value=0.0045  Score=50.31  Aligned_cols=46  Identities=26%  Similarity=0.432  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          73 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        73 L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      ...|=.+-.+|..|++.|+||++|+++|...-+|=+||.+|-+++.
T Consensus        26 iA~LT~rI~~L~~Hl~~h~KD~~srrgL~~lv~kRkrlL~YL~~~d   71 (86)
T TIGR00952        26 IALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTD   71 (86)
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4566678889999999999999999999999999999999999854

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13.

>CHL00027 rps15 ribosomal protein S15

Probab=96.40  E-value=0.0057  Score=50.34  Aligned_cols=46  Identities=26%  Similarity=0.370  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         256 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       256 L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      ..-|=.+-..+..||+.|+||.+++++|.-.-++=+||.+|.+++.
T Consensus        26 iA~LT~rI~~Lt~Hlk~hkKD~~s~RgL~~lv~kRkrLL~YL~r~d   71 (90)
T CHL00027         26 VFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKN   71 (90)
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHhCC
Confidence            4556678889999999999999999999999999999999999864

>PRK05626 rpsO 30S ribosomal protein S15; Reviewed

Probab=96.32  E-value=0.0062  Score=49.79  Aligned_cols=45  Identities=24%  Similarity=0.379  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         257 YCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       257 ~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      .-|=.|-.+|..|++.|+||++|+++|...=++=+||-+|-+++.
T Consensus        30 A~LT~rI~~L~~Hlk~~~KD~~srrgL~~lv~kRkrlL~YL~~~d   74 (89)
T PRK05626         30 ALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKD   74 (89)
T ss_pred             HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHhHHHHHHHHHhcC
Confidence            445568889999999999999999999999999999999998864

>CHL00027 rps15 ribosomal protein S15

Probab=96.32  E-value=0.0086  Score=49.28  Aligned_cols=47  Identities=26%  Similarity=0.369  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          72 DLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        72 DL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      -..-|=.+...+..||+.|+||.+++++|.-.-++=+||.+|.+++.
T Consensus        25 QiA~LT~rI~~Lt~Hlk~hkKD~~s~RgL~~lv~kRkrLL~YL~r~d   71 (90)
T CHL00027         25 QVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKN   71 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHhCC
Confidence            34556678889999999999999999999999999999999999864

>PRK05626 rpsO 30S ribosomal protein S15; Reviewed

Probab=96.28  E-value=0.0071  Score=49.44  Aligned_cols=46  Identities=24%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          73 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        73 L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      ..-|=.+-.+|..|++.|+||++|+++|...=++=+||.+|-+++.
T Consensus        29 iA~LT~rI~~L~~Hlk~~~KD~~srrgL~~lv~kRkrlL~YL~~~d   74 (89)
T PRK05626         29 VALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKD   74 (89)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHhHHHHHHHHHhcC
Confidence            4556678889999999999999999999999999999999999854

>PTZ00119 40S ribosomal protein S15; Provisional

Probab=95.49  E-value=0.019  Score=55.85  Aligned_cols=44  Identities=27%  Similarity=0.449  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         258 CLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       258 ~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      -|=.|-.+|..||+.|+||.+|+++|...-+|=+||.+|.+++.
T Consensus       133 iLTeRI~~LTeHLk~hkKD~~SrRGLlkLV~KRRKLLkYLKrkD  176 (302)
T PTZ00119        133 CLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTD  176 (302)
T ss_pred             HHHHHHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            45567889999999999999999999999999999999999864

>PTZ00119 40S ribosomal protein S15; Provisional

Probab=95.37  E-value=0.023  Score=55.24  Aligned_cols=98  Identities=21%  Similarity=0.308  Sum_probs=66.7

Q ss_pred             chHHHHHHHcCCCC----CChhhHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchH
Q psy7749          54 NKILRIMKAMGLAP----NLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESA  129 (319)
Q Consensus        54 kkI~~ILk~nGlap----eIPEDL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~  129 (319)
                      .+..+|.++-+..+    ...--..-|=.|-.+|..||+.|+||++|+++|...-+|=+||.+|.+++.  +.  .|.. 
T Consensus       108 ~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~LTeHLk~hkKD~~SrRGLlkLV~KRRKLLkYLKrkD--~e--rY~~-  182 (302)
T PTZ00119        108 YKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTD--FE--LYKH-  182 (302)
T ss_pred             HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHHHhcC--HH--HHHH-
Confidence            44456666666543    233345667789999999999999999999999999999999999999964  11  2333 


Q ss_pred             HHHHHHhcCccccccCC--cceeeccccc
Q psy7749         130 TASAFILEGFRFRTRRG--FRYKIDLVGL  156 (319)
Q Consensus       130 tA~~lv~~~~~~~~~~~--~~~~~~~~~~  156 (319)
                      +-+.|-....+|-++.-  -.=.+.++|+
T Consensus       183 lIkkLGLRkv~f~~~~~~~~~k~i~~~~v  211 (302)
T PTZ00119        183 TCNLLKIKCILFAIPDSRDRSKAINAAAV  211 (302)
T ss_pred             HHHHhCCceEEeecccccChhhccchhee
Confidence            33335555666655532  1123556653

>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]

Probab=93.52  E-value=0.31  Score=40.62  Aligned_cols=70  Identities=17%  Similarity=0.361  Sum_probs=60.6

Q ss_pred             CCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHHH
Q psy7749         188 RSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIR  267 (319)
Q Consensus       188 ~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iR  267 (319)
                      ..+|.=+-.-.-+|-+.|++.||+              ||||.+..   .-+.+.|-.-.+..+|||.||.-|-.-...-
T Consensus        20 ~~AP~vvA~G~G~iAe~II~~Ake--------------~~Vpi~ed---p~Lv~~L~~lelg~~IPeelY~vVAEifafi   82 (92)
T COG2257          20 DKAPKVVASGKGEIAEKIIEKAKE--------------HGVPIQED---PLLVELLLKLELGDEIPEELYEVVAEIFAFI   82 (92)
T ss_pred             CCCCEEEeecchHHHHHHHHHHHH--------------cCCCcccC---HHHHHHHHhccccccCCHHHHHHHHHHHHHH
Confidence            457887877888999999999985              89998775   5599999999999999999999999888888


Q ss_pred             HHHhhhc
Q psy7749         268 KHLERSR  274 (319)
Q Consensus       268 KHLe~n~  274 (319)
                      .|++.|-
T Consensus        83 ~~~~~~~   89 (92)
T COG2257          83 YEVDNNV   89 (92)
T ss_pred             HHHHccC
Confidence            8887763

>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]

Probab=85.20  E-value=2.2  Score=35.66  Aligned_cols=59  Identities=17%  Similarity=0.329  Sum_probs=48.5

Q ss_pred             cccccchhhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhhcc
Q psy7749          26 CNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSR   91 (319)
Q Consensus        26 ~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~lRkHLe~n~   91 (319)
                      -+++++|..+.    ..||||-+..   .-+.+.|-...+..+|||.||.-|-.-...-.|++.|-
T Consensus        31 G~iAe~II~~A----ke~~Vpi~ed---p~Lv~~L~~lelg~~IPeelY~vVAEifafi~~~~~~~   89 (92)
T COG2257          31 GEIAEKIIEKA----KEHGVPIQED---PLLVELLLKLELGDEIPEELYEVVAEIFAFIYEVDNNV   89 (92)
T ss_pred             hHHHHHHHHHH----HHcCCCcccC---HHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHccC
Confidence            56777766544    4699999875   56999999999999999999999988888888887663

>PF13565 HTH_32: Homeodomain-like domain

Probab=80.94  E-value=2.2  Score=31.77  Aligned_cols=44  Identities=25%  Similarity=0.465  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHHhhCC--CCccchhhhhhcccCCCceeeeccchHHHHH
Q psy7749         198 SEDVKDHIFKLSKKG--LTPSQIGVILRDSHGVAQVRFVSGNKILRIM  243 (319)
Q Consensus       198 ~eEVe~~IvkLaKkG--~tpSqIG~iLRD~~GIP~VK~vtGkkI~~IL  243 (319)
                      ++|+++.|+++....  .|+.+|...|.++|||..  .+.-..|.++|
T Consensus        32 ~~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~--~~S~~tv~R~L   77 (77)
T PF13565_consen   32 DPEQRERIIALIEEHPRWTPREIAEYLEEEFGISV--RVSRSTVYRIL   77 (77)
T ss_pred             cHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCC--CccHhHHHHhC
Confidence            677778888887765  899999999999999865  44444555554

>TIGR00789 flhB_rel flhB C-terminus-related protein

Probab=80.70  E-value=3  Score=33.59  Aligned_cols=60  Identities=15%  Similarity=0.289  Sum_probs=45.2

Q ss_pred             CCCceeecccccccccchhhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHH
Q psy7749          15 GPNWFIKSGFYCNLKTDIVLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAV   81 (319)
Q Consensus        15 ~p~w~~~s~~~~~~~~~~~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv   81 (319)
                      .|.+.+..+...+++..|..++    .+||||.+..   ..+.+.|-.-++..+|||+||.-+-...
T Consensus        15 ~~aP~VvAKG~g~~A~~I~~~A----~e~~VPi~~~---~~LAr~L~~~~ig~~IP~~ly~aVAeil   74 (82)
T TIGR00789        15 DKAPKVVASGVGEVAERIIEIA----KKHGIPIVED---PDLVDVLLKLDLDDEIPEELYEVVAEIF   74 (82)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHH----HHcCCCEEeC---HHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence            3455555454577777777665    4799999887   5688888888999999999997765544

This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
3izb_O	151	Localization Of The Small Subunit Ribosomal Protein		4e-64
3iz6_O	151	Localization Of The Small Subunit Ribosomal Protein		3e-59
3zey_G	151	High-resolution Cryo-electron Microscopy Structure		3e-55
2xzm_O	153	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-55
3jyv_O	84	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-35
1ysh_E	84	Localization And Dynamic Behavior Of Ribosomal Prot		3e-33
1ysh_E	84	Localization And Dynamic Behavior Of Ribosomal Prot		3e-33
3j20_Q	158	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-29
1s1h_O	65	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-24
1s1h_O	65	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-24

>pdb|3IZB|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 151

Iteration: 1
 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/150 (74%), Positives = 132/150 (88%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH+ GKGIS SA+PY R+ P W KL+SE V + I K ++KGLTPSQIGV+LRD+HGV
Sbjct: 1   MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
            Q R ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  TQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALV 318
           RIHRLARYY+T AVLPPNWKYESATASALV
Sbjct: 121 RIHRLARYYRTVAVLPPNWKYESATASALV 150

>pdb|3IZ6|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 151

Iteration: 1
 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/151 (71%), Positives = 126/151 (83%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH+ GKGIS SA+PY+R+ P+W+K  + DV++ I K +KKG  PSQIGV+LRD HG+
Sbjct: 1   MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
             V+ V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYYK    LPP WKYES TAS LVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

>pdb|3ZEY|G Chain G, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 151

Iteration: 1
 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 123/151 (81%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           M RMH  G G + SALPYRR+ P WLK +S DV D + KL+KKGL+PS+IG+ LRDS G+
Sbjct: 1   MVRMHGNGHGKAASALPYRRTPPTWLKSSSRDVIDAVCKLAKKGLSPSRIGMQLRDSMGI 60
Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
           AQV+ V+G KILRI+K  G+AP +PEDLYCLIK+A  +RKHLER+ KDKD+KFRLILVES
Sbjct: 61  AQVKNVTGRKILRILKHKGMAPEIPEDLYCLIKRATQMRKHLERNTKDKDTKFRLILVES 120
Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALVA 319
           RIHRLARYY+    LPP WKYES+TASA+VA
Sbjct: 121 RIHRLARYYRRVKQLPPTWKYESSTASAMVA 151

>pdb|2XZM|O Chain O, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 153

Iteration: 1
 Score =  211 bits (536), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 120/152 (78%), Gaps = 2/152 (1%)
Query: 169 MGRMHTPGKG--ISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSH 226
           MGRM   GKG  IS SALP++R  P WL +T   V D   KL+KKGLTPSQIGVILRD H
Sbjct: 1   MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQH 60
Query: 227 GVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILV 286
           G+ QVRF++G KILRI+K  G AP LPEDLY LIKKA++IRKHLE++RKDKDSK+RLILV
Sbjct: 61  GIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILV 120
Query: 287 ESRIHRLARYYKTKAVLPPNWKYESATASALV 318
           ESRIHRL+RYYK    LPP WKY + TASALV
Sbjct: 121 ESRIHRLSRYYKLNQKLPPKWKYNAQTASALV 152

>pdb|3JYV|O Chain O, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 84

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 80/84 (95%)
Query: 234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
           ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ESRIHRL
Sbjct: 1   ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 294 ARYYKTKAVLPPNWKYESATASAL 317
           ARYY+T AVLPPNWKYESATASAL
Sbjct: 61  ARYYRTVAVLPPNWKYESATASAL 84

>pdb|1YSH|E Chain E, Localization And Dynamic Behavior Of Ribosomal Protein L30e Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 73/83 (87%)
Query: 51  VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 110
           V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVESRIHRL
Sbjct: 2   VTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 61
Query: 111 ARYYKTKAVLPPNWKYESATASA 133
           ARYYK    LPP WKYES TAS 
Sbjct: 62  ARYYKRTKKLPPTWKYESTTAST 84

>pdb|1YSH|E Chain E, Localization And Dynamic Behavior Of Ribosomal Protein L30e Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 73/83 (87%)
Query: 234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
           V+G+KILRI+KA GLAP +PEDLY LIKKAVAIRKHLER+RKDKDSKFRLILVESRIHRL
Sbjct: 2   VTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 61
Query: 294 ARYYKTKAVLPPNWKYESATASA 316
           ARYYK    LPP WKYES TAS 
Sbjct: 62  ARYYKRTKKLPPTWKYESTTAST 84

>pdb|3J20|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 158

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           M RMH   +G S S  P R + P W++ T E++++ + KL K+G + + IG ILRD +G+
Sbjct: 1   MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 229 AQVRFV----SGNK---ILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKF 281
             V+      + N+   I RI++  GLAP +PEDL  LI++AV +RKHLE+  KD  S  
Sbjct: 61  PSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMR 120
Query: 282 RLILVESRIHRLARYYKTKAVLPPNWKYESATASALV 318
            L L+ES+I RL +YYK K  LP NW+Y+  TA  LV
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157

>pdb|1S1H|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 65

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 62/65 (95%)
Query: 51  VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 110
           ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ESRIHRL
Sbjct: 1   ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 111 ARYYK 115
           ARYY+
Sbjct: 61  ARYYR 65

>pdb|1S1H|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 65

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 62/65 (95%)
Query: 234 VSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRL 293
           ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ESRIHRL
Sbjct: 1   ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 294 ARYYK 298
           ARYY+
Sbjct: 61  ARYYR 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	2e-85
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	1e-49
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	6e-84
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	3e-50
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O Length = 151

 Score =  252 bits (646), Expect = 2e-85
 Identities = 111/150 (74%), Positives = 132/150 (88%)

Query: 169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGV 228
           MGRMH+ GKGIS SA+PY R+ P W KL+SE V + I K ++KGLTPSQIGV+LRD+HGV
Sbjct: 1   MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60

Query: 229 AQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVES 288
            Q R ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+KFRLIL+ES
Sbjct: 61  TQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIES 120

Query: 289 RIHRLARYYKTKAVLPPNWKYESATASALV 318
           RIHRLARYY+T AVLPPNWKYESATASALV
Sbjct: 121 RIHRLARYYRTVAVLPPNWKYESATASALV 150

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O Length = 151

 Score =  161 bits (409), Expect = 1e-49
 Identities = 76/99 (76%), Positives = 91/99 (91%)

Query: 37  VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
           V+LRD+HGV Q R ++GNKI+RI+K+ GLAP +PEDLY LIKKAV++RKHLER+RKDKD+
Sbjct: 52  VLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDA 111

Query: 97  KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
           KFRLIL+ESRIHRLARYY+T AVLPPNWKYESATASA +
Sbjct: 112 KFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O Length = 153

 Score =  249 bits (636), Expect = 6e-84
 Identities = 105/152 (69%), Positives = 120/152 (78%), Gaps = 2/152 (1%)

Query: 169 MGRMHT--PGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSH 226
           MGRM     GKGIS SALP++R  P WL +T   V D   KL+KKGLTPSQIGVILRD H
Sbjct: 1   MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQH 60

Query: 227 GVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILV 286
           G+ QVRF++G KILRI+K  G AP LPEDLY LIKKA++IRKHLE++RKDKDSK+RLILV
Sbjct: 61  GIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILV 120

Query: 287 ESRIHRLARYYKTKAVLPPNWKYESATASALV 318
           ESRIHRL+RYYK    LPP WKY + TASALV
Sbjct: 121 ESRIHRLSRYYKLNQKLPPKWKYNAQTASALV 152

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O Length = 153

 Score =  163 bits (413), Expect = 3e-50
 Identities = 71/99 (71%), Positives = 83/99 (83%)

Query: 37  VILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDS 96
           VILRD HG+ QVRF++G KILRI+K  G AP LPEDLY LIKKA++IRKHLE++RKDKDS
Sbjct: 54  VILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDS 113

Query: 97  KFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI 135
           K+RLILVESRIHRL+RYYK    LPP WKY + TASA +
Sbjct: 114 KYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALV 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 58/365 (15%), Positives = 103/365 (28%), Gaps = 117/365 (32%)

Query: 34  LFCVILRDSHGVAQVRFVSG------NKILRIMKAMGLAPNLPEDLYC-----LIKKAVA 82
           LF  +L     + Q +FV          ++  +K     P++   +Y      L      
Sbjct: 67  LFWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 83  IRKHLERSRKDKDSKFRLILVESR------IHRLARYYKTKAVLPPNWKYESATASAFIL 136
             K+   SR     K R  L+E R      I  +    KT   +                
Sbjct: 126 FAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WV---------ALDV--C 171

Query: 137 EGFRFRTRRGFRYKIDLVGLLDDNFYNKKSLKMGRMHTPGKGISKSALPYRRSVPNW--- 193
             ++ + +  F  KI         F+    L +   ++P   +        +  PNW   
Sbjct: 172 LSYKVQCKMDF--KI---------FW----LNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 194 ------LKLTSEDVKDHIFKLSKKGLTP---------------------SQIGVILRDSH 226
                 +KL    ++  + +L K                           +I +  R   
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK- 275

Query: 227 GVAQVRFVSGNKILRIM------------------KAMGLAPN-LPED-------LYCLI 260
            V    F+S      I                   K +   P  LP +          +I
Sbjct: 276 QVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 261 KKAVAIRKHLERS---RKDKDSKFRLILVESRIHRLA-----RYYKTKAVLPPNWKYESA 312
             A +IR  L      +     K   I+ ES ++ L      + +   +V PP+    + 
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 313 TASAL 317
             S +
Sbjct: 391 LLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 54/325 (16%), Positives = 91/325 (28%), Gaps = 101/325 (31%)

Query: 8   QFNETTLGPNWFIKSGFYCN-LKTDIVL-----------F---CVIL---RDSHGVAQVR 49
           + +         +KS  Y N L   +VL           F   C IL   R    V    
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFK-QVT--D 279

Query: 50  FVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRL-ILVESRIH 108
           F+S      I          P+++  L+ K +  R           +  RL I+ ES   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 109 RLAR--YYKTKAVLPPNWKYESATASAF-ILEGFRFRTRRGFRYKIDLVGLLDDNFYNKK 165
            LA    +K         K  +   S+  +LE   +R      +   L            
Sbjct: 340 GLATWDNWKH----VNCDKLTTIIESSLNVLEPAEYRKM----FD-RLSVFPPS------ 384

Query: 166 SLKMGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDS 225
                  H P   +S   +        W  +   DV   + KL K  L       + +  
Sbjct: 385 ------AHIPTILLSL--I--------WFDVIKSDVMVVVNKLHKYSL-------VEKQP 421

Query: 226 HGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLIL 285
                         + I             +Y  +K  +     L RS           +
Sbjct: 422 K----------ESTISIP-----------SIYLELKVKLENEYALHRS-----------I 449

Query: 286 VESRIHRLARYYKTKAVLPPNW-KY 309
           V+     + + + +  ++PP   +Y
Sbjct: 450 VDHY--NIPKTFDSDDLIPPYLDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	100.0
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	100.0
3j20_Q	158	30S ribosomal protein S15P/S13E; archaea, archaeal	100.0
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	100.0
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	100.0
3j20_Q	158	30S ribosomal protein S15P/S13E; archaea, archaeal	100.0
3ulw_A	93	30S ribosomal protein S15; structural genomics, ID	97.76
4a5u_B	88	30S ribosomal protein S15; transferase-RNA binding	97.75
4a5u_B	88	30S ribosomal protein S15; transferase-RNA binding	97.71
3ulw_A	93	30S ribosomal protein S15; structural genomics, ID	97.71
1a32_A	88	Ribosomal protein S15; multiwavelength anomalous d	97.37
1a32_A	88	Ribosomal protein S15; multiwavelength anomalous d	97.34
2vqe_O	89	30S ribosomal protein S15; tRNA-binding, rRNA-bind	97.24
2vqe_O	89	30S ribosomal protein S15; tRNA-binding, rRNA-bind	97.22
3r8n_O	88	30S ribosomal protein S15; protein biosynthesis, R	97.06
3r8n_O	88	30S ribosomal protein S15; protein biosynthesis, R	97.03
3bbn_O	90	Ribosomal protein S15; small ribosomal subunit, sp	96.7
3bbn_O	90	Ribosomal protein S15; small ribosomal subunit, sp	96.69

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O

Probab=100.00  E-value=7.3e-82  Score=545.22  Aligned_cols=151  Identities=74%  Similarity=1.202  Sum_probs=149.4

Q ss_pred             hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHcCC
Q psy7749         169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAMGL  248 (319)
Q Consensus       169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~nGl  248 (319)
                      |||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++||++||+
T Consensus         1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~gl   80 (151)
T 3u5c_N            1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGL   80 (151)
T ss_dssp             -CCTTSSCCCCCCCCCCSCCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTC
T ss_pred             CCCcCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749         249 APNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA  319 (319)
Q Consensus       249 apeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~  319 (319)
                      +|+|||||||||||||+||||||+|+||+||||+|||||||||||++|||++++||+||+|+|+||++|||
T Consensus        81 apeiPEDL~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  151 (151)
T 3u5c_N           81 APEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALVN  151 (151)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCHHHHHHHHC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O

Probab=100.00  E-value=1.5e-81  Score=544.07  Aligned_cols=151  Identities=70%  Similarity=1.115  Sum_probs=147.3

Q ss_pred             hhccC--CCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeeccchHHHHHHHc
Q psy7749         169 MGRMH--TPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVSGNKILRIMKAM  246 (319)
Q Consensus       169 MaRMh--s~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vtGkkI~~ILk~n  246 (319)
                      |||||  ++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++|||+|
T Consensus         1 M~rmh~~~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~   80 (153)
T 2xzm_O            1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKN   80 (153)
T ss_dssp             ---CCSCSSCCCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHT
T ss_pred             CCCCCcCCCCCCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHc
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749         247 GLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA  319 (319)
Q Consensus       247 GlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~  319 (319)
                      |++|+|||||||||||||+||||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus        81 glapeiPEDL~~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  153 (153)
T 2xzm_O           81 GCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ  153 (153)
T ss_dssp             TCCCSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCSSHHHHHHHC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986

>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.5e-69  Score=469.31  Aligned_cols=151  Identities=45%  Similarity=0.761  Sum_probs=149.9

Q ss_pred             hhccCCCCCCCCCcCCCCCCCCCCCccCChhHHHHHHHHHhhCCCCccchhhhhhcccCCCceeeec-------cchHHH
Q psy7749         169 MGRMHTPGKGISKSALPYRRSVPNWLKLTSEDVKDHIFKLSKKGLTPSQIGVILRDSHGVAQVRFVS-------GNKILR  241 (319)
Q Consensus       169 MaRMhs~~kG~S~S~~Py~~~~P~Wl~~s~eEVe~~IvkLaKkG~tpSqIG~iLRD~~GIP~VK~vt-------GkkI~~  241 (319)
                      |||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+||       |+||++
T Consensus         1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~   80 (158)
T 3j20_Q            1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITR   80 (158)
T ss_dssp             CCCCSSSSSCCCCCCCCCCSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999       999999


Q ss_pred             HHHHcCCCCCChhhHHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcCcCCCCCccchhhhhhhhC
Q psy7749         242 IMKAMGLAPNLPEDLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASALVA  319 (319)
Q Consensus       242 ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~~LP~~WkY~~~tA~~lv~  319 (319)
                      ||++||++|+|||||++|++||++|++||+.|+||+||+|+|++++||++||.+||+++.+||++|+|+|+||++||.
T Consensus        81 iLk~~gl~p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~lp~~w~Y~~~ta~~lv~  158 (158)
T 3j20_Q           81 ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLVR  158 (158)
T ss_dssp             HHHHHTCSCSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCCHHHHHHHHC
T ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceECHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999973

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O

Probab=100.00  E-value=2.2e-59  Score=405.58  Aligned_cols=125  Identities=59%  Similarity=0.966  Sum_probs=120.4

Q ss_pred             CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q psy7749          12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAI   83 (319)
Q Consensus        12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~l   83 (319)
                      .+.+|+|++.|+     .+|+++++|   +|||++||||||||+||+|||+||++|||+||++|+|||||||||||||+|
T Consensus        21 ~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~l  100 (153)
T 2xzm_O           21 KRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSI  100 (153)
T ss_dssp             CCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence            467999999988     677888888   699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHh
Q psy7749          84 RKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL  136 (319)
Q Consensus        84 RkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  136 (319)
                      |||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus       101 RkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  153 (153)
T 2xzm_O          101 RKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ  153 (153)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCSSHHHHHHHC
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999985

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O

Probab=100.00  E-value=5.7e-59  Score=402.47  Aligned_cols=125  Identities=64%  Similarity=1.019  Sum_probs=120.6

Q ss_pred             CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeeccchHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q psy7749          12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVSGNKILRIMKAMGLAPNLPEDLYCLIKKAVAI   83 (319)
Q Consensus        12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LikKAv~l   83 (319)
                      .+.+|+|++.|+     .+|+++++|   +|||++||||||||+||+|||+||++||++||++|+|||||||||||||+|
T Consensus        19 ~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~l   98 (151)
T 3u5c_N           19 SRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSV   98 (151)
T ss_dssp             CCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence            467999999988     678888888   699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHHh
Q psy7749          84 RKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFIL  136 (319)
Q Consensus        84 RkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  136 (319)
                      |||||+|+||+||||+|||||||||||++|||++++||+||+|+|+||++|||
T Consensus        99 rkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~  151 (151)
T 3u5c_N           99 RKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALVN  151 (151)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCHHHHHHHHC
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999986

>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.1e-46  Score=327.96  Aligned_cols=124  Identities=41%  Similarity=0.702  Sum_probs=119.5

Q ss_pred             CCCCCCceeecc-----cccccccch---hhhhhhhccccCCCceeeec-------cchHHHHHHHcCCCCCChhhHHHH
Q psy7749          12 TTLGPNWFIKSG-----FYCNLKTDI---VLFCVILRDSHGVAQVRFVS-------GNKILRIMKAMGLAPNLPEDLYCL   76 (319)
Q Consensus        12 ~~~~p~w~~~s~-----~~~~~~~~~---~~IG~iLRD~~GIp~VK~vt-------GkkI~~ILk~nGlapeIPEDL~~L   76 (319)
                      .+.+|+|++.++     .||++++++   +|||++||||||||+||+||       |+||++||++||++|+|||||++|
T Consensus        19 ~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~iLk~~gl~p~iPEDL~~L   98 (158)
T 3j20_Q           19 RTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFL   98 (158)
T ss_dssp             CSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHHHHHHHTCSCSSCHHHHHH
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHHHHHHcCCCCCCHHHHHHH
Confidence            468999999988     677777777   69999999999999999999       999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcCcCCCCCccchHHHHHHH
Q psy7749          77 IKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKAVLPPNWKYESATASAFI  135 (319)
Q Consensus        77 ikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv  135 (319)
                      ++||++|++||+.|+||+||+|+|++++||++||.+||+++++||++|+|+|+||++||
T Consensus        99 t~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~lp~~w~Y~~~ta~~lv  157 (158)
T 3j20_Q           99 IRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV  157 (158)
T ss_dssp             HHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceECHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999997

>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...

Probab=97.75  E-value=2e-05  Score=63.06  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         257 YCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       257 ~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      .-|=.+..++..|++.|+||.+|+++|..+.++-+||.+|++++.
T Consensus        29 A~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d   73 (88)
T 4a5u_B           29 ALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD   73 (88)
T ss_dssp             HHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            456789999999999999999999999999999999999999864

>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...

Probab=97.71  E-value=2.4e-05  Score=62.51  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          73 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        73 L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      ...|-.+..++..|++.|+||++|+++|..+.++-+||.+|++++.
T Consensus        28 iA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d   73 (88)
T 4a5u_B           28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD   73 (88)
T ss_dssp             HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            3566779999999999999999999999999999999999999963

>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H

Probab=97.37  E-value=0.00048  Score=55.01  Aligned_cols=63  Identities=22%  Similarity=0.344  Sum_probs=51.9

Q ss_pred             HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         239 ILRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       239 I~~ILk~nGlap---eIPED-L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      -.+|.++.+..+   -=||- ..-|-.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus         7 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d   73 (88)
T 1a32_A            7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD   73 (88)
T ss_dssp             HHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC
Confidence            345566655544   45665 5667789999999999999999999999999999999999999864

>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H

Probab=97.34  E-value=0.00062  Score=54.35  Aligned_cols=63  Identities=22%  Similarity=0.344  Sum_probs=52.5

Q ss_pred             HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          56 ILRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        56 I~~ILk~nGlap---eIPED-L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      -.+|.++.+..+   -=||- ..-|-.+..++..|++.|+||.+|+++|..+-++-+||.+|.+++.
T Consensus         7 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d   73 (88)
T 1a32_A            7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD   73 (88)
T ss_dssp             HHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC
Confidence            345666666554   45665 5677789999999999999999999999999999999999999864

>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...

Probab=97.24  E-value=0.00048  Score=55.12  Aligned_cols=62  Identities=21%  Similarity=0.354  Sum_probs=51.0

Q ss_pred             HHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         240 LRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       240 ~~ILk~nGlap---eIPED-L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      .+|.++.+-.+   -=||- ..-|-.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus         9 ~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d   74 (89)
T 2vqe_O            9 QKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRED   74 (89)
T ss_dssp             HHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcC
Confidence            45555555444   44555 5667789999999999999999999999999999999999999864

>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...

Probab=97.22  E-value=0.00062  Score=54.46  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=52.2

Q ss_pred             HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          56 ILRIMKAMGLAP---NLPED-LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        56 I~~ILk~nGlap---eIPED-L~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      -.+|.++.+-.+   -=||- ..-|-.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus         8 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d   74 (89)
T 2vqe_O            8 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRED   74 (89)
T ss_dssp             HHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcC
Confidence            345666666544   45665 5677789999999999999999999999999999999999999864

>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=96.70  E-value=0.00036  Score=56.12  Aligned_cols=46  Identities=26%  Similarity=0.360  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         256 LYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       256 L~~LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      ..-|=.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus        26 IA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd   71 (90)
T 3bbn_O           26 VFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKIN   71 (90)
T ss_dssp             HHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            4566788889999999999999999999999999999999999864

>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=96.69  E-value=0.00051  Score=55.23  Aligned_cols=47  Identities=26%  Similarity=0.359  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          72 DLYCLIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        72 DL~~LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      -..-|-.+..+|..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus        25 QIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd   71 (90)
T 3bbn_O           25 QVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKIN   71 (90)
T ss_dssp             HHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            34566778899999999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1vs5o1	88	Ribosomal protein S15 {Escherichia coli [TaxId: 56	96.72
d1vs5o1	88	Ribosomal protein S15 {Escherichia coli [TaxId: 56	96.66
d1kuqa_	84	Ribosomal protein S15 {Thermus thermophilus [TaxId	96.52
d1kuqa_	84	Ribosomal protein S15 {Thermus thermophilus [TaxId	96.46
d1a32a_	85	Ribosomal protein S15 {Bacillus stearothermophilus	96.41
d1a32a_	85	Ribosomal protein S15 {Bacillus stearothermophilus	96.35
g3bzy.1	100	Type III secretion proteins EscU {Escherichia coli	81.24

>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00082  Score=51.72  Aligned_cols=43  Identities=26%  Similarity=0.385  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         259 LIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       259 LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      |=.+--+|..||+.|+||++++++|...-++=+||.+|.+++.
T Consensus        31 lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d   73 (88)
T d1vs5o1          31 LTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD   73 (88)
T ss_dssp             HHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3368889999999999999999999999999999999998853

>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00099  Score=51.23  Aligned_cols=48  Identities=25%  Similarity=0.361  Sum_probs=41.4

Q ss_pred             hhhHHHHH-HHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhc
Q psy7749          70 PEDLYCLI-KKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTK  117 (319)
Q Consensus        70 PEDL~~Li-kKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~  117 (319)
                      ||==.+++ .+--+|..|++.|+||++++++|...-++=+||.+|.+++
T Consensus        24 ~evQiA~lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~   72 (88)
T d1vs5o1          24 TEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRK   72 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhc
Confidence            44434444 7888999999999999999999999999999999999884

>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.0014  Score=49.96  Aligned_cols=48  Identities=25%  Similarity=0.399  Sum_probs=40.8

Q ss_pred             hhhHHHHH-HHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhc
Q psy7749         253 PEDLYCLI-KKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTK  300 (319)
Q Consensus       253 PEDL~~LI-kKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~  300 (319)
                      ||==..++ .+--+|..|++.|+||++++++|.-.-++=+||.+|.+++
T Consensus        22 ~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~   70 (84)
T d1kuqa_          22 TEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRE   70 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhc
Confidence            44333333 7788999999999999999999999999999999999874

>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.0016  Score=49.50  Aligned_cols=48  Identities=25%  Similarity=0.399  Sum_probs=41.0

Q ss_pred             hhhHHHHH-HHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhc
Q psy7749          70 PEDLYCLI-KKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTK  117 (319)
Q Consensus        70 PEDL~~Li-kKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~  117 (319)
                      ||==..++ .+--+|..|++.|+||++++++|.-.-++=+||.+|.+++
T Consensus        22 ~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~   70 (84)
T d1kuqa_          22 TEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRE   70 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhc
Confidence            44333444 6888999999999999999999999999999999999874

>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.41  E-value=0.0016  Score=49.63  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhhhcCcccchhhHHHHHHhhhhhHHHHHhcC
Q psy7749         259 LIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  301 (319)
Q Consensus       259 LIkKAv~iRKHLe~n~KD~~sKr~L~LiESkI~RL~rYYK~~~  301 (319)
                      |=.+--++..|++.|+||++++++|...-++=+||-+|.+++.
T Consensus        30 lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YLrk~d   72 (85)
T d1a32a_          30 LTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD   72 (85)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3367788999999999999999999999999999999999853

>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.35  E-value=0.002  Score=49.08  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhhccCcccchhhHhHHHHhhhhhHHHHHhcC
Q psy7749          76 LIKKAVAIRKHLERSRKDKDSKFRLILVESRIHRLARYYKTKA  118 (319)
Q Consensus        76 LikKAv~lRkHLe~n~kDk~~Kr~L~LiESkI~RL~rYYk~~~  118 (319)
                      |=.+--++..|++.|+||++++++|...-++=+||.+|.+++.
T Consensus        30 lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YLrk~d   72 (85)
T d1a32a_          30 LTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD   72 (85)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3367889999999999999999999999999999999999853