Psyllid ID: psy7771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MSLLINLCTILLTLTTLMLQAEALPQRQPLYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHDTYVDFGAHTGHHGSFGWYADFPAHKDA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEccccccccccccEEccccccccc
Coil and Loop (DISEMBL)
MSLLINLCTILLTLTTLMLQAealpqrqplyqnprysesthpvrqnyispslrttrraakpnqptsyshqtaeyyrpnyqpsgqnqyydpsyqpsnyqesynpnpaafkpsfdpstfdpanfepsyepssfqptalkkaplpskvtdhdnsesrlerqsggggghdtyvdfgahtghhgsfgwyadfpahkda
Flexible Loop (DISEMBL)
MSLLINLCTILLTLTTLMLQAEALPQRQPLYQnprysesthpvrqnyispslrttrraakpnqptsyshqtaEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALKKAPLPSKVTDHDNSESrlerqsggggGHDTYVDFGAHTGHHGSFGWYADFPAHKDA
Low Complexity Region (SEG)
MSllinlctilltlttlmlQAEALPQRQPLYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHDTYVDFGAHTGHHGSFGWYADFPAHKDA
Disordered region (IsUnstruct)
**LLINLCTILLTLTTLMLQAEA**************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*SLLINLCTILLTLTTLMLQAEALPQRQPL****R*****HPVRQNYIS*********************TAEYYRPNYQPSGQNQYYDPSYQ**NYQ*SYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTAL*******************************YVDFGAHTGHHGSFGWYADFPAH***
Disordered Region (DISEMBL)
MSLLINLCTILLTLTTLMLQAEALPQRQPLYQNPRYSESTHPVRQNYISPSLRT***************QTAEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALKKA***********************GGHDTYVDFGAHTGHHGSFGWYADFPAHKDA
Disordered Region (DISPRO)
*SLLINLCTILLTLTTLMLQAEALPQRQPLYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHDTYVDFGAHTGHHGSFGWYADFPAH***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLINLCTILLTLTTLMLQAEALPQRQPLYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHDTYVDFGAHTGHHGSFGWYADFPAHKDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
270012064	70	hypothetical protein TcasGA2_TC006165 [T	0.212	0.585	0.659	4e-06
307210667	106	hypothetical protein EAI_06766 [Harpegna	0.326	0.594	0.432	0.0001
307179489	781	Tudor and KH domain-containing protein [	0.284	0.070	0.45	0.0004
322783812	105	hypothetical protein SINV_02473 [Solenop	0.305	0.561	0.402	0.0005
357628191	120	hypothetical protein KGM_13421 [Danaus p	0.274	0.441	0.444	0.0008

>gi|270012064|gb|EFA08512.1| hypothetical protein TcasGA2_TC006165 [Tribolium castaneum]

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 33/44 (75%), Gaps = 3/44 (6%)

Query: 149 DNSES--RLERQSGGGGGHDTYVDFGAHTGHHGSFGWYADFPAH 190
           D +ES  R +RQ+GG   HD+ VDFGAH G HGSFGWYADFP H
Sbjct: 24  DQAESVLRAQRQAGGHHHHDS-VDFGAHKGEHGSFGWYADFPVH 66

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210667|gb|EFN87090.1| hypothetical protein EAI_06766 [Harpegnathos saltator]

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 125 SYEPSSFQPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHDTYVDFGAHTGHHGSFGWY 184
           S  PS  +     +A +P+ V   D+SE R ER +        YVDFG HTG +G+F WY
Sbjct: 42  SIAPSLSRMARQTEAYMPAGVVHQDDSE-RTERSATR---ILDYVDFGGHTGSNGAFSWY 97

Query: 185 ADFPAHK 191
           AD+PAH+
Sbjct: 98  ADYPAHR 104

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179489|gb|EFN67803.1| Tudor and KH domain-containing protein [Camponotus floridanus]

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 132 QPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHD-TYVDFGAHTGHHGSFGWYADFPAH 190
           Q  A     +PS V   D+ E R ER       H   YVDFG  TG +G+F WYAD+PAH
Sbjct: 724 QTEAYVPVAVPSIVHQDDSREHRPERSVT----HILDYVDFGGQTGSNGAFSWYADYPAH 779

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322783812|gb|EFZ11054.1| hypothetical protein SINV_02473 [Solenopsis invicta]

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 125 SYEPSSFQPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHDTYVDFGAHTGHHGSFGWY 184
           S +  ++ P A+      S V   DNSE  ++R          YVDFG HTG +G+F WY
Sbjct: 46  SRQTEAYVPIAI------SNVAHQDNSE--VQRSERSATRVLDYVDFGGHTGSNGAFSWY 97

Query: 185 ADFPAHK 191
           AD+PAH+
Sbjct: 98  ADYPAHR 104

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628191|gb|EHJ77594.1| hypothetical protein KGM_13421 [Danaus plexippus]

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 134 TALKKAPLPSKVTDHDNSESR------LERQSGGGGGHDTYVDFGAHTGHHGSFGWYADF 187
            AL   PLP KV   + + S        ER    G     YVDFGAHTG +G+FGWYAD+
Sbjct: 56  VALAPPPLPVKVQAQEQAASNEGISQYAERPPDFG----EYVDFGAHTGDNGAFGWYADY 111

Query: 188 PAH 190
           P +
Sbjct: 112 PIN 114

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
UNIPROTKB|Q25460	875	FP1 "Adhesive plaque matrix pr	0.569	0.125	0.309	5.9e-08
UNIPROTKB|F1PGS0	1969	POLR2A "DNA-directed RNA polym	0.559	0.054	0.346	1.2e-07
UNIPROTKB|G3MZY8	1970	POLR2A "DNA-directed RNA polym	0.559	0.054	0.343	8.5e-07
UNIPROTKB|P11414	467	POLR2A "DNA-directed RNA polym	0.595	0.246	0.318	7.9e-06
UNIPROTKB|I3LQ53	543	I3LQ53 "Uncharacterized protei	0.595	0.211	0.318	9.8e-06
FB|FBgn0003277	1887	RpII215 "RNA polymerase II 215	0.544	0.055	0.328	1.3e-05
ZFIN|ZDB-GENE-041008-78	1965	polr2a "polymerase (RNA) II (D	0.575	0.056	0.323	3.3e-05
UNIPROTKB|P24928	1970	POLR2A "DNA-directed RNA polym	0.595	0.058	0.318	4.7e-05
RGD|1587326	1970	Polr2a "polymerase (RNA) II (D	0.595	0.058	0.318	4.7e-05
MGI|MGI:98086	1970	Polr2a "polymerase (RNA) II (D	0.595	0.058	0.318	4.7e-05

UNIPROTKB|Q25460 FP1 "Adhesive plaque matrix protein" [Mytilus edulis (taxid:6550)]

 Score = 136 (52.9 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 39/126 (30%), Positives = 65/126 (51%)

Query:    22 EALPQRQPLYQ-NPRY-SESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNY 79
             +A P   P Y+  P Y ++ T+P       PS   + +A KP+ P +Y  +++  Y  +Y
Sbjct:   440 KAKPSYPPTYKAKPTYKAKPTYPSTYK-AKPSYPASYKA-KPSYPPTYKSKSS--YPSSY 495

Query:    80 QPSGQNQYYDPSYQPS-NYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPS-SFQPTALK 137
             +P    + Y P+Y+P   Y+ +Y P P+ + PS+ P T  P    P+Y+P  S+ PT   
Sbjct:   496 KPK---KTYPPTYKPKLTYKPTYKPKPS-YPPSYKPKTTYP----PTYKPKISYPPTYKA 547

Query:   138 KAPLPS 143
             K   P+
Sbjct:   548 KPSYPA 553

GO:0005576 "extracellular region" evidence=IDA

UNIPROTKB|F1PGS0 POLR2A "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)]

 Score = 137 (53.3 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 44/127 (34%), Positives = 61/127 (48%)

Query:    29 PLYQ--NPRYSEST---HPVRQNYIS--PSLRTTRRAAKPNQPTSYSHQTAEY--YRPNY 79
             P Y   +P YS ++    P   NY    P+   T  +  P  P SYS  +  Y    PNY
Sbjct:  1725 PSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSP-SYSPTSPNYTPMSPNY 1783

Query:    80 QPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALK 137
              P+  N    PSY P++   SY+P+   + P   P T+ P++  PSY PSS  + PT+ K
Sbjct:  1784 SPTSPNLQLSPSYSPTS--PSYSPSSPRYTPQ-SP-TYTPSS--PSYSPSSPSYSPTSPK 1837

Query:   138 KAPL-PS 143
               P  PS
Sbjct:  1838 YTPTSPS 1844

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|G3MZY8 POLR2A "DNA-directed RNA polymerase" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 8.5e-07, P = 8.5e-07
 Identities = 44/128 (34%), Positives = 62/128 (48%)

Query:    29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
             P Y   +P YS ++    P   NY   SP+   T  +  P  P SYS  +  Y    PNY
Sbjct:  1726 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSP-SYSPTSPNYTPTSPNY 1784

Query:    80 QPSGQN-QYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTAL 136
              P+  +     PSY P++   SY+P+   + P   P T+ P++  PSY PSS  + PT+ 
Sbjct:  1785 SPTSPSYSLTSPSYSPTS--PSYSPSSPRYTPQ-SP-TYTPSS--PSYSPSSPSYSPTSP 1838

Query:   137 KKAPL-PS 143
             K  P  PS
Sbjct:  1839 KYTPASPS 1846

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|P11414 POLR2A "DNA-directed RNA polymerase II subunit RPB1" [Cricetulus griseus (taxid:10029)]

 Score = 122 (48.0 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 43/135 (31%), Positives = 64/135 (47%)

Query:    25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
             PQ  P Y   +P YS ++    P   NY   SPS   T  +  P  P SYS  +  Y   
Sbjct:   107 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 164

Query:    76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
              P+Y P+  +     PSY P++   SY+P   ++ P   S+ P++   +   PSY P+S 
Sbjct:   165 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 222

Query:   131 -FQPTALKKAPL-PS 143
              + PT+   +P  PS
Sbjct:   223 SYSPTSPSYSPTSPS 237

GO:0005634 "nucleus" evidence=ISS

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

UNIPROTKB|I3LQ53 I3LQ53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 43/135 (31%), Positives = 64/135 (47%)

Query:    25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
             PQ  P Y   +P YS ++    P   NY   SPS   T  +  P  P SYS  +  Y   
Sbjct:   183 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 240

Query:    76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
              P+Y P+  +     PSY P++   SY+P   ++ P   S+ P++   +   PSY P+S 
Sbjct:   241 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 298

Query:   131 -FQPTALKKAPL-PS 143
              + PT+   +P  PS
Sbjct:   299 SYSPTSPSYSPTSPS 313

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

FB|FBgn0003277 RpII215 "RNA polymerase II 215kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 41/125 (32%), Positives = 61/125 (48%)

Query:    29 PLYQNPRYSEST---HPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQPSGQN 85
             PLY +PRY+ +T   +P    Y SPS         P  P  YS        P++  SG N
Sbjct:  1610 PLYASPRYASTTPNFNPQSTGY-SPS----SSGYSPTSPV-YSPTVQFQSSPSFAGSGSN 1663

Query:    86 QYYDP--SYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPL 141
               Y P  +Y PS+   +Y+PN  ++ P+  PS + P++  PSY P+S  + PT+   +P 
Sbjct:  1664 -IYSPGNAYSPSS--SNYSPNSPSYSPT-SPS-YSPSS--PSYSPTSPCYSPTSPSYSPT 1716

Query:   142 PSKVT 146
                 T
Sbjct:  1717 SPNYT 1721

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS;NAS;IDA

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS;NAS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0005700 "polytene chromosome" evidence=IDA

ZFIN|ZDB-GENE-041008-78 polr2a "polymerase (RNA) II (DNA directed) polypeptide A" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 42/130 (32%), Positives = 60/130 (46%)

Query:    33 NPRYSEST---HPVRQNYI--SPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQN 85
             +P YS ++    P   NY   SPS   T  +  P  P SYS  +  Y    PNY P+  +
Sbjct:  1735 SPSYSPTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSP-SYSPTSPNYTPTSPNYSPTSPS 1793

Query:    86 QY-YDPSYQPSN--Y---QESYNPNPAAFKPS---FDPSTFDPANFEPSYEPSS--FQPT 134
                  PSY PS+  Y     +Y P+  ++ PS   + P++       PSY PSS  + PT
Sbjct:  1794 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT 1853

Query:   135 ALKKAPLPSK 144
             + K +P   K
Sbjct:  1854 SPKYSPTSPK 1863

GO:0003677 "DNA binding" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|P24928 POLR2A "DNA-directed RNA polymerase II subunit RPB1" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 43/135 (31%), Positives = 64/135 (47%)

Query:    25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
             PQ  P Y   +P YS ++    P   NY   SPS   T  +  P  P SYS  +  Y   
Sbjct:  1610 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1667

Query:    76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
              P+Y P+  +     PSY P++   SY+P   ++ P   S+ P++   +   PSY P+S 
Sbjct:  1668 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725

Query:   131 -FQPTALKKAPL-PS 143
              + PT+   +P  PS
Sbjct:  1726 SYSPTSPSYSPTSPS 1740

GO:0046872 "metal ion binding" evidence=IEA

GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=NAS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA;NAS;TAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

RGD|1587326 Polr2a "polymerase (RNA) II (DNA directed) polypeptide A" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 43/135 (31%), Positives = 64/135 (47%)

Query:    25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
             PQ  P Y   +P YS ++    P   NY   SPS   T  +  P  P SYS  +  Y   
Sbjct:  1610 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1667

Query:    76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
              P+Y P+  +     PSY P++   SY+P   ++ P   S+ P++   +   PSY P+S 
Sbjct:  1668 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725

Query:   131 -FQPTALKKAPL-PS 143
              + PT+   +P  PS
Sbjct:  1726 SYSPTSPSYSPTSPS 1740

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:98086 Polr2a "polymerase (RNA) II (DNA directed) polypeptide A" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 43/135 (31%), Positives = 64/135 (47%)

Query:    25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
             PQ  P Y   +P YS ++    P   NY   SPS   T  +  P  P SYS  +  Y   
Sbjct:  1610 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1667

Query:    76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
              P+Y P+  +     PSY P++   SY+P   ++ P   S+ P++   +   PSY P+S 
Sbjct:  1668 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725

Query:   131 -FQPTALKKAPL-PS 143
              + PT+   +P  PS
Sbjct:  1726 SYSPTSPSYSPTSPS 1740

GO:0003677 "DNA binding" evidence=IDA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 51/277 (18%), Positives = 79/277 (28%), Gaps = 113/277 (40%)

Query: 2   SLLI-------------NL-CTILLT--------------------------LT---TLM 18
            LL+             NL C ILLT                          LT      
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 19  LQAEALPQR-QPLYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRP 77
           L  + L  R Q L   PR   +T+P R + I+ S+R        +        T + ++ 
Sbjct: 306 LLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIR--------DGLA-----TWDNWK- 348

Query: 78  NYQPSGQNQYYDPSY---QPSNYQESYNPNPAAFKPS------------FDPSTFDPANF 122
           +          + S    +P+ Y++ ++   + F PS            FD    D    
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 123 EPSYEPSSFQPTALKKAPLPSKVTDHD---------NSESRLERQ----------SGGGG 163
                  S     ++K P  S ++             +E  L R                
Sbjct: 408 VNKLHKYS----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 164 GHDTYVD--FGAHTGHH----------GSF-GWYADF 187
               Y+D  F +H GHH            F   + DF
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00