Psyllid ID: psy7809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MDTTKTNGATPKLAVVEKGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEccccccHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHccccccHHccccHHHHHHHHHHHHccccccHHHHHcccccccEEEEEccccccHHHHHHHHHHHcccEEEEEccHHHHHHHcccHHHHHHHHHHHHHHccccEEEEEcHHHHccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHcHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcHHHccccccccccccccccHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdttktngatpklavvekgkprtgvpkvgpnrranpelTALVEKDIvqtdtgvgwddiaglDNVKQIFKETLLLPKLMPQLFKGIlrpwrgillfgppgtgkTLLAKAVASqhgstffnvlpssltskhygesEKLVRALFETARARAPAVIFIDEvdafcsgsreheATRRVRCELLshmdgvgtgsgdKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLClgeirkdpnvdvATLSKQLIGYSGSDIRDLCQEIILIAAREVIqnagftgvnskppdgrnnigakgddskcqvaplgsdrivlnrsHFERAKEKCRKSVDGALIRKYKRWNELYGSR
Flexible Loop (DISEMBL)
mdttktngatpklavvekgkprtgvpkvgpnrranpeltalveKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNagftgvnskppdGRNNIGakgddskcqvaplgsdrivlnrshferakekcrksvdgalirkykrwnelygsr
Low Complexity Region (SEG)
MDTTKTNGATPKLAVVEKGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGSR
Disordered region (IsUnstruct)
*************************************LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG*****************************RIVLNRSHF*****KCRKSVDGALIRKYKRWNEL****
Disordered Region (DISOPRED)
**************************************TALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA****************ELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA*****************************LGSDRIVLNRSHFERAKEKCR**V**ALIRKYKRWNELYG**
Disordered Region (DISEMBL)
********ATPKLAVVEKGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGSR
Disordered Region (DISPRO)
**********************TGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGR********DSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTTKTNGATPKLAVVEKGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
B5X3X5	486	Katanin p60 ATPase-contai	N/A	N/A	0.833	0.588	0.461	2e-71
Q4R407	491	Katanin p60 ATPase-contai	N/A	N/A	0.827	0.578	0.461	2e-70
O75449	491	Katanin p60 ATPase-contai	yes	N/A	0.827	0.578	0.464	2e-70
Q5RII9	485	Katanin p60 ATPase-contai	yes	N/A	0.833	0.589	0.459	3e-70
Q0IIR9	492	Katanin p60 ATPase-contai	no	N/A	0.827	0.577	0.455	3e-70
Q1HGK7	492	Katanin p60 ATPase-contai	yes	N/A	0.827	0.577	0.461	4e-70
A9RA82	490	Katanin p60 ATPase-contai	N/A	N/A	0.839	0.587	0.445	8e-70
B7NZ88	490	Katanin p60 ATPase-contai	no	N/A	0.833	0.583	0.443	2e-69
Q9BW62	490	Katanin p60 ATPase-contai	no	N/A	0.833	0.583	0.445	2e-69
B4USW8	490	Katanin p60 ATPase-contai	N/A	N/A	0.839	0.587	0.442	3e-69

>sp|B5X3X5|KTNA1_SALSA Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/321 (46%), Positives = 205/321 (63%), Gaps = 35/321 (10%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L   +E+DI+  +  V WDDIA L+  K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct: 185 DLIEALERDIISQNPNVKWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 244

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct: 245 PPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDE 304

Query: 157 VDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD----KGVLVLAATNHPWDLDEAL 209
           +D+ CS    S EHEA+RRV+ ELL  MDGVG  S +    K V+VLAATN PWD+DEAL
Sbjct: 305 IDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEAL 364

Query: 210 KRRFEKRI--------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           +RR EKRI          ++++ + L E+    +VD+A +++Q  GYSG+DI ++C++  
Sbjct: 365 RRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDAS 424

Query: 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
           L+A R  I+  G T      P+   NI      S+ ++       +      FE + +K 
Sbjct: 425 LMAMRRRIE--GLT------PEEIRNI------SRAEM------HMPTTMEDFESSLKKV 464

Query: 322 RKSVDGALIRKYKRWNELYGS 342
            KSV  + + KY++W E +GS
Sbjct: 465 SKSVSASDLEKYEKWIEEFGS 485

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.
Salmo salar (taxid: 8030)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3

>sp|Q4R407|KTNA1_MACFA Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/323 (46%), Positives = 205/323 (63%), Gaps = 39/323 (12%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L   +E+DI+  +  V WDDIA L   K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct: 190 DLVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 249

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  +PA IFIDE
Sbjct: 250 PPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309

Query: 157 VDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD----KGVLVLAATNHPWDLDEAL 209
           +D+ CS    S EHEA+RRV+ ELL  MDGVG  S +    K V+VLAATN PWD+DEAL
Sbjct: 310 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEAL 369

Query: 210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           +RR EKRI  P+       +++ + L E+    +VD+A++++ + GYSG+DI ++C++  
Sbjct: 370 RRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429

Query: 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVL--NRSHFERAKE 319
           L+A R  I+  G T     P + RN               L  + + +      FE A +
Sbjct: 430 LMAMRRRIE--GLT-----PEEIRN---------------LSKEEMHMPTTMEDFEMALK 467

Query: 320 KCRKSVDGALIRKYKRWNELYGS 342
           K  KSV  A I +Y++W   +GS
Sbjct: 468 KVSKSVSAADIERYEKWIFEFGS 490

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons, microtubule release within the cell body may allow their subsequent transport into neuronal processes by microtubule dependent motor proteins. This transport is required for axonal growth.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/323 (46%), Positives = 205/323 (63%), Gaps = 39/323 (12%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L   +E+DI+  +  V WDDIA L   K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct: 190 DLVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 249

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  +PA IFIDE
Sbjct: 250 PPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309

Query: 157 VDAFCS---GSREHEATRRVRCELLSHMDGV-GTGSGD---KGVLVLAATNHPWDLDEAL 209
           +D+ CS    S EHEA+RRV+ ELL  MDGV GT   D   K V+VLAATN PWD+DEAL
Sbjct: 310 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEAL 369

Query: 210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           +RR EKRI  P+       +++ + L E+    +VD+A++++ + GYSG+DI ++C++  
Sbjct: 370 RRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429

Query: 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVL--NRSHFERAKE 319
           L+A R  I+  G T     P + RN               L  + + +      FE A +
Sbjct: 430 LMAMRRRIE--GLT-----PEEIRN---------------LSKEEMHMPTTMEDFEMALK 467

Query: 320 KCRKSVDGALIRKYKRWNELYGS 342
           K  KSV  A I +Y++W   +GS
Sbjct: 468 KVSKSVSAADIERYEKWIFEFGS 490

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons, microtubule release within the cell body may allow their subsequent transport into neuronal processes by microtubule dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/320 (45%), Positives = 200/320 (62%), Gaps = 34/320 (10%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L   +E+DI+  +  V WDDIA L+  K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct: 185 DLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 244

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct: 245 PPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 304

Query: 157 VDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD---KGVLVLAATNHPWDLDEALK 210
           +D+ CS    S EHEA+RRV+ ELL  MDGVG  S +   K V+VLAATN PWD+DEAL+
Sbjct: 305 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALR 364

Query: 211 RRFEKRI--------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIIL 262
           RR EKRI          + ++ + L E+    +V++  +++Q+ GYSG+DI ++C++  L
Sbjct: 365 RRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASL 424

Query: 263 IAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322
           +A R  I+  G T     P + RN              P     +      FE A +K  
Sbjct: 425 MAMRRRIE--GLT-----PEEIRN-------------LPKDEMHMPTTMEDFETALKKVS 464

Query: 323 KSVDGALIRKYKRWNELYGS 342
           KSV  A + KY++W   +GS
Sbjct: 465 KSVSAADLEKYEKWIAEFGS 484

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/323 (45%), Positives = 204/323 (63%), Gaps = 39/323 (12%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L   +E+DI+  +  + WDDIA L+  K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct: 191 DLIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 250

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPGTGKTLLAKAVA++  +TFFN+  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct: 251 PPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 310

Query: 157 VDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD----KGVLVLAATNHPWDLDEAL 209
           +D+ CS    S EHEA+RRV+ ELL  MDGVG  S +    K V+VLAATN PWD+DEAL
Sbjct: 311 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEAL 370

Query: 210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           +RR EKRI  P+       +++ + L E+    +V++  +++ + GYSG+DI ++C++  
Sbjct: 371 RRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS 430

Query: 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVL--NRSHFERAKE 319
           L+A R  I+  G T     P + RN               L  D + +      FE A +
Sbjct: 431 LMAMRRRIE--GLT-----PEEIRN---------------LSRDDMHMPTTMEDFEMALK 468

Query: 320 KCRKSVDGALIRKYKRWNELYGS 342
           K  KSV  + I KY++W E +GS
Sbjct: 469 KVSKSVSASDIEKYEKWIEEFGS 491

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q1HGK7|KTNA1_CHICK Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1

 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/323 (46%), Positives = 204/323 (63%), Gaps = 39/323 (12%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L   +E+DI+  +  + WDDIA L   K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct: 191 DLVEALERDIISQNPNIRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 250

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct: 251 PPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 310

Query: 157 VDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD----KGVLVLAATNHPWDLDEAL 209
           +D+ CS    S EHEA+RRV+ ELL  MDGVG  + +    K V+VLAATN PWD+DEAL
Sbjct: 311 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEAL 370

Query: 210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           +RR EKRI  P+       +++ + L E+    +VD+A +++++ GYSG+DI ++C++  
Sbjct: 371 RRRLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDAS 430

Query: 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVL--NRSHFERAKE 319
           L+A R  I+  G T     P + RN               L  D + +      FE A +
Sbjct: 431 LMAMRRRIE--GLT-----PEEIRN---------------LSRDEMHMPTTMEDFEIALK 468

Query: 320 KCRKSVDGALIRKYKRWNELYGS 342
           K  KSV  A I KY++W   +GS
Sbjct: 469 KVSKSVSAADIEKYEKWIVEFGS 491

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|A9RA82|KATL1_PAPAN Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1

 Score =  264 bits (674), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/323 (44%), Positives = 200/323 (61%), Gaps = 35/323 (10%)

Query: 35  NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILL 94
           + +L   +E+DIV  +  + WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+
Sbjct: 187 DKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLM 246

Query: 95  FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFI 154
            GPPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFI
Sbjct: 247 VGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFI 306

Query: 155 DEVDAFCS---GSREHEATRRVRCELLSHMDGVG----TGSGDKGVLVLAATNHPWDLDE 207
           DE+D+ CS    S EHEA+RRV+ ELL  MDGVG         K V+VLAATN PWD+DE
Sbjct: 307 DEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDE 366

Query: 208 ALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQE 259
           AL+RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++
Sbjct: 367 ALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRD 426

Query: 260 IILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKE 319
             L+A R  I   G   + +   +       KGD                    FE A +
Sbjct: 427 ASLMAMRRRINGLGPEEIRALSKEELQMPVTKGD--------------------FELALK 466

Query: 320 KCRKSVDGALIRKYKRWNELYGS 342
           K  KSV  A + KY++W   +GS
Sbjct: 467 KIAKSVSAADLEKYEKWMVEFGS 489

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Papio anubis (taxid: 9555)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|B7NZ88|KATL1_RABIT Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/325 (44%), Positives = 203/325 (62%), Gaps = 39/325 (12%)

Query: 35  NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILL 94
           + +L   +E+DIV  +  + WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+
Sbjct: 187 DKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLM 246

Query: 95  FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFI 154
            GPPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFI
Sbjct: 247 VGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFI 306

Query: 155 DEVDAFCS---GSREHEATRRVRCELLSHMDGVG----TGSGDKGVLVLAATNHPWDLDE 207
           DE+D+ CS    S EHEA+RRV+ ELL  MDGVG         K V+VLAATN PWD+DE
Sbjct: 307 DEIDSICSRRGTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDE 366

Query: 208 ALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQE 259
           AL+RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++
Sbjct: 367 ALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRD 426

Query: 260 IILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVL--NRSHFERA 317
             L+A R  I        N   P+              ++  L  + + +   R  FE A
Sbjct: 427 ASLMAMRRRI--------NGLSPE--------------EIRALSKEELQMPVTRGDFELA 464

Query: 318 KEKCRKSVDGALIRKYKRWNELYGS 342
            +K  KSV  A + KY++W   +GS
Sbjct: 465 LKKIAKSVSAADLEKYEKWMVEFGS 489

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Oryctolagus cuniculus (taxid: 9986)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=1 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/321 (44%), Positives = 198/321 (61%), Gaps = 35/321 (10%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L   +E+DIV  +  + WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+ G
Sbjct: 189 DLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVG 248

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct: 249 PPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 308

Query: 157 VDAFCS---GSREHEATRRVRCELLSHMDGVG----TGSGDKGVLVLAATNHPWDLDEAL 209
           +D+ CS    S EHEA+RRV+ ELL  MDGVG         K V+VLAATN PWD+DEAL
Sbjct: 309 IDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 368

Query: 210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           +RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++  
Sbjct: 369 RRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428

Query: 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
           L+A R  I       + +   +       KGD                    FE A +K 
Sbjct: 429 LMAMRRRINGLSPEEIRALSKEELQMPVTKGD--------------------FELALKKI 468

Query: 322 RKSVDGALIRKYKRWNELYGS 342
            KSV  A + KY++W   +GS
Sbjct: 469 AKSVSAADLEKYEKWMVEFGS 489

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|B4USW8|KATL1_OTOGA Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1

 Score =  262 bits (669), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/323 (44%), Positives = 199/323 (61%), Gaps = 35/323 (10%)

Query: 35  NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILL 94
           + +L   +E+DIV  +  + WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+
Sbjct: 187 DKDLIEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLM 246

Query: 95  FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFI 154
            GPPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFI
Sbjct: 247 VGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFI 306

Query: 155 DEVDAFCS---GSREHEATRRVRCELLSHMDGVG----TGSGDKGVLVLAATNHPWDLDE 207
           DE+D+ CS    S EHEA+RRV+ ELL  MDGVG         K V+VLAATN PWD+DE
Sbjct: 307 DEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDE 366

Query: 208 ALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQE 259
           AL+RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++
Sbjct: 367 ALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRD 426

Query: 260 IILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKE 319
             L+A R  I       + +   +       KGD                    FE A +
Sbjct: 427 ASLMAMRRRINGLSPEEIRALSKEELQMPVTKGD--------------------FELALK 466

Query: 320 KCRKSVDGALIRKYKRWNELYGS 342
           K  KSV  A + KY++W   +GS
Sbjct: 467 KIAKSVSAADLEKYEKWMVEFGS 489

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Otolemur garnettii (taxid: 30611)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
328719677	474	PREDICTED: katanin p60 ATPase-containing	0.836	0.605	0.467	4e-73
195497255	572	GE25304 [Drosophila yakuba] gi|194182124	0.930	0.557	0.438	7e-73
194746625	578	GF16069 [Drosophila ananassae] gi|190628	0.857	0.508	0.460	1e-72
195343587	572	GM10656 [Drosophila sechellia] gi|194133	0.930	0.557	0.438	1e-72
195568356	572	GD19637 [Drosophila simulans] gi|1941981	0.930	0.557	0.438	2e-72
195152623	582	GL22198 [Drosophila persimilis] gi|19845	0.857	0.505	0.466	2e-72
195453410	574	GK14289 [Drosophila willistoni] gi|19416	0.854	0.510	0.462	2e-72
442617504	605	katanin 60, isoform B [Drosophila melano	0.886	0.502	0.451	2e-72
195111694	580	GI10218 [Drosophila mojavensis] gi|19391	0.857	0.506	0.463	2e-72
194898677	572	GG11155 [Drosophila erecta] gi|190650597	0.857	0.513	0.460	3e-72

>gi|328719677|ref|XP_001952578.2| PREDICTED: katanin p60 ATPase-containing subunit A1-like [Acyrthosiphon pisum]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 150/321 (46%), Positives = 203/321 (63%), Gaps = 34/321 (10%)

Query: 36  PELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLF 95
           P L  ++EKDI+Q +  V WD IAGL + K + +E ++LP LMP  FKGI RPW+G+L+ 
Sbjct: 173 PHLVDIIEKDILQRNPNVQWDRIAGLKHAKTLLQEAMVLPMLMPDFFKGIRRPWKGVLMV 232

Query: 96  GPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFID 155
           GPPGTGKT+LAKAVA++ G+TFFNV  S++TSK+ GESEKLVR LFE A+  +P+ IFID
Sbjct: 233 GPPGTGKTMLAKAVATECGTTFFNVSSSTMTSKYRGESEKLVRLLFEMAKIHSPSTIFID 292

Query: 156 EVDAFCS--GSR-EHEATRRVRCELLSHMDGVGTGS---GDKGVLVLAATNHPWDLDEAL 209
           EVD+ CS  GS  EHEA+RR + ELL HMDG+ + S    ++ ++VLAATNHPWD+D+A 
Sbjct: 293 EVDSLCSLRGSEGEHEASRRFKAELLIHMDGLNSSSDEENNQSIMVLAATNHPWDIDDAF 352

Query: 210 KRRFEKRI--------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           +RRFEKRI        S I ++ LCL  +  D + D   ++ +L GY+GSDI ++C++  
Sbjct: 353 RRRFEKRIYLPLPNDESRITLLKLCLEGVNLDDSFDYRFVANKLRGYTGSDIANVCRDAA 412

Query: 262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
           ++  R  I   G T      PD   NI     D    V              F  A E+C
Sbjct: 413 MMGMRRKI--VGQT------PDQIKNIKRADIDLPVTV------------QDFNEAVERC 452

Query: 322 RKSVDGALIRKYKRWNELYGS 342
           RK+V G  I KY+ W + +GS
Sbjct: 453 RKTVTGQDIEKYQSWIDEFGS 473

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497255|ref|XP_002096023.1| GE25304 [Drosophila yakuba] gi|194182124|gb|EDW95735.1| GE25304 [Drosophila yakuba]

 Score =  280 bits (716), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 157/358 (43%), Positives = 219/358 (61%), Gaps = 39/358 (10%)

Query: 2   DTTKTNGATPKLAVVEKGKPRTGVP---KVGPNRRANPELTALVEKDIVQTDTGVGWDDI 58
           D+T            E G+P+       K  PN     EL  ++E+DI+Q D  V W DI
Sbjct: 236 DSTAAGINGGAAGDGENGEPQAAQEDERKFQPNNHIEAELVDILERDILQKDPKVRWSDI 295

Query: 59  AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118
           A L + K++ +E ++LP LMP  FKGI RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFF
Sbjct: 296 ADLHDAKRLLEEAVVLPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 355

Query: 119 NVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS---GSREHEATRRVRC 175
           NV  ++LTSK+ GESEK+VR LFE AR  AP+ IFIDE+D+ CS      EHEA+RRV+ 
Sbjct: 356 NVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKS 415

Query: 176 ELLSHMDGVGTGSGD-KGVLVLAATNHPWDLDEALKRRFEKRIS-PI-------QIIGLC 226
           ELL  MDGVG G    K V+VLAATN PWD+DEAL+RR EKRI  P+        ++ + 
Sbjct: 416 ELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKIN 475

Query: 227 LGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRN 286
           L E++ D +VD+  ++ +L GYSG+DI ++C+E  +++ R  I  AG T      P+   
Sbjct: 476 LREVKVDDSVDLTYVANELKGYSGADITNVCREASMMSMRRKI--AGLT------PE--- 524

Query: 287 NIGAKGDDSKCQVAPLGSDRIVLNRSH--FERAKEKCRKSVDGALIRKYKRWNELYGS 342
                      Q+  L ++ + L  S+  F  A  +C KSV  A + KY++W + +GS
Sbjct: 525 -----------QIRQLATEEVDLPVSNKDFNEAMSRCNKSVSRADLDKYEKWMKEFGS 571

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746625|ref|XP_001955777.1| GF16069 [Drosophila ananassae] gi|190628814|gb|EDV44338.1| GF16069 [Drosophila ananassae]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/330 (46%), Positives = 211/330 (63%), Gaps = 36/330 (10%)

Query: 27  KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL 86
           K  PN     EL  ++E+DI+Q D  V W DIA L + K++ +E ++LP LMP  FKGI 
Sbjct: 270 KFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFKGIR 329

Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFFNV  ++LTSK+ GESEK+VR LFE AR 
Sbjct: 330 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARF 389

Query: 147 RAPAVIFIDEVDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD-KGVLVLAATNHP 202
            AP+ IFIDE+D+ CS      EHEA+RRV+ ELL  MDGVG G    K V+VLAATN P
Sbjct: 390 YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFP 449

Query: 203 WDLDEALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           WD+DEAL+RR EKRI  P+        ++ + L E++ D +VD+  ++ +L GYSG+DI 
Sbjct: 450 WDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKVDESVDLTYVANELKGYSGADIT 509

Query: 255 DLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSH- 313
           ++C+E  +++ R  I  AG T      P+              Q+  L ++ + L  S+ 
Sbjct: 510 NVCREASMMSMRRKI--AGLT------PE--------------QIRQLATEEVDLPVSNK 547

Query: 314 -FERAKEKCRKSVDGALIRKYKRWNELYGS 342
            F  A  +C KSV  A + KY++W + +GS
Sbjct: 548 DFNEAMSRCNKSVSRADLDKYEKWMKEFGS 577

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195343587|ref|XP_002038377.1| GM10656 [Drosophila sechellia] gi|194133398|gb|EDW54914.1| GM10656 [Drosophila sechellia]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 157/358 (43%), Positives = 218/358 (60%), Gaps = 39/358 (10%)

Query: 2   DTTKTNGATPKLAVVEKGKPRTGVP---KVGPNRRANPELTALVEKDIVQTDTGVGWDDI 58
           D+T            E G P+       K  PN     EL  ++E+DI+Q D  V W DI
Sbjct: 236 DSTAAGSNGGAAGDGENGDPQAAQDEERKFQPNNHIEAELVDILERDILQKDPKVRWSDI 295

Query: 59  AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118
           A L + K++ +E ++LP LMP  FKGI RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFF
Sbjct: 296 ADLHDAKRLLEEAVVLPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 355

Query: 119 NVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS---GSREHEATRRVRC 175
           NV  ++LTSK+ GESEK+VR LFE AR  AP+ IFIDE+D+ CS      EHEA+RRV+ 
Sbjct: 356 NVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKS 415

Query: 176 ELLSHMDGVGTGSGD-KGVLVLAATNHPWDLDEALKRRFEKRIS-PI-------QIIGLC 226
           ELL  MDGVG G    K V+VLAATN PWD+DEAL+RR EKRI  P+        ++ + 
Sbjct: 416 ELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKIN 475

Query: 227 LGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRN 286
           L E++ D +VD+  ++ +L GYSG+DI ++C+E  +++ R  I  AG T      P+   
Sbjct: 476 LREVKVDDSVDLTYVANELKGYSGADITNVCREASMMSMRRKI--AGLT------PE--- 524

Query: 287 NIGAKGDDSKCQVAPLGSDRIVLNRSH--FERAKEKCRKSVDGALIRKYKRWNELYGS 342
                      Q+  L ++ + L  S+  F  A  +C KSV  A + KY++W + +GS
Sbjct: 525 -----------QIRQLATEEVDLPVSNKDFNEAMSRCNKSVSRADLDKYEKWMKEFGS 571

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195568356|ref|XP_002102182.1| GD19637 [Drosophila simulans] gi|194198109|gb|EDX11685.1| GD19637 [Drosophila simulans]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/358 (43%), Positives = 218/358 (60%), Gaps = 39/358 (10%)

Query: 2   DTTKTNGATPKLAVVEKGKPRTGVP---KVGPNRRANPELTALVEKDIVQTDTGVGWDDI 58
           D+T            E G P+       K  PN     EL  ++E+DI+Q D  V W DI
Sbjct: 236 DSTAAGSNGGAAGDGENGDPQAAQDEERKFQPNNHIEAELVDILERDILQKDPKVRWSDI 295

Query: 59  AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF 118
           A L + K++ +E ++LP LMP  FKGI RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFF
Sbjct: 296 ADLHDAKRLLEEAVVLPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 355

Query: 119 NVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS---GSREHEATRRVRC 175
           NV  ++LTSK+ GESEK+VR LFE AR  AP+ IFIDE+D+ CS      EHEA+RRV+ 
Sbjct: 356 NVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKS 415

Query: 176 ELLSHMDGVGTGSGD-KGVLVLAATNHPWDLDEALKRRFEKRIS-PI-------QIIGLC 226
           ELL  MDGVG G    K V+VLAATN PWD+DEAL+RR EKRI  P+        ++ + 
Sbjct: 416 ELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKIN 475

Query: 227 LGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRN 286
           L E++ D +VD+  ++ +L GYSG+DI ++C+E  +++ R  I  AG T      P+   
Sbjct: 476 LREVKVDDSVDLTYVANELKGYSGADITNVCREASMMSMRRKI--AGLT------PE--- 524

Query: 287 NIGAKGDDSKCQVAPLGSDRIVLNRSH--FERAKEKCRKSVDGALIRKYKRWNELYGS 342
                      Q+  L ++ + L  S+  F  A  +C KSV  A + KY++W + +GS
Sbjct: 525 -----------QIRQLATEEVDLPVSNKDFNEAMSRCNKSVSRADLDKYEKWMKEFGS 571

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195152623|ref|XP_002017236.1| GL22198 [Drosophila persimilis] gi|198453938|ref|XP_001359405.2| GA10173 [Drosophila pseudoobscura pseudoobscura] gi|194112293|gb|EDW34336.1| GL22198 [Drosophila persimilis] gi|198132580|gb|EAL28551.2| GA10173 [Drosophila pseudoobscura pseudoobscura]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/330 (46%), Positives = 212/330 (64%), Gaps = 36/330 (10%)

Query: 27  KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL 86
           K  PN     EL  ++E+DI+Q D  V W DIA L + K++ +E ++LP LMP  FKGI 
Sbjct: 274 KFQPNNHIEAELVDILERDILQRDPKVRWSDIADLQDAKRLLEEAVVLPMLMPDYFKGIR 333

Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFFNV  ++LTSK+ GESEK+VR LFE AR 
Sbjct: 334 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARF 393

Query: 147 RAPAVIFIDEVDAFCS--GSR-EHEATRRVRCELLSHMDGVGTGSGD-KGVLVLAATNHP 202
            AP+ IFIDE+D+ CS  GS  EHEA+RRV+ ELL  MDGVG G    K V+VLAATN P
Sbjct: 394 YAPSTIFIDEIDSLCSRRGSETEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFP 453

Query: 203 WDLDEALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           WD+DEAL+RR EKRI  P+        ++ + L E++ D  VD+  ++ +L GYSG+DI 
Sbjct: 454 WDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKVDDTVDLTYVANELKGYSGADIT 513

Query: 255 DLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSH- 313
           ++C+E  +++ R  I  AG T      P+              Q+  L ++ + L  S+ 
Sbjct: 514 NVCREASMMSMRRKI--AGLT------PE--------------QIRQLATEEVDLPVSNK 551

Query: 314 -FERAKEKCRKSVDGALIRKYKRWNELYGS 342
            F  A  +C KSV  A + KY++W + +GS
Sbjct: 552 DFNEAMSRCNKSVSRADLDKYEKWMKEFGS 581

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453410|ref|XP_002073776.1| GK14289 [Drosophila willistoni] gi|194169861|gb|EDW84762.1| GK14289 [Drosophila willistoni]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/331 (46%), Positives = 213/331 (64%), Gaps = 38/331 (11%)

Query: 27  KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL 86
           K  PN     EL  ++E+DI+Q D  V W DIA L + K++ +E ++LP LMP+ FKGI 
Sbjct: 266 KFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPEYFKGIR 325

Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFFNV  ++LTSK+ GESEK+VR LFE AR 
Sbjct: 326 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARF 385

Query: 147 RAPAVIFIDEVDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGDKG--VLVLAATNH 201
            AP+ IFIDE+D+ CS      EHEA+RRV+ ELL  MDGVG GS ++   V+VLAATN 
Sbjct: 386 YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVG-GSEEQAKVVMVLAATNF 444

Query: 202 PWDLDEALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDI 253
           PWD+DEAL+RR EKRI  P+        ++ + L E++ D +VD+  ++ QL GYSG+DI
Sbjct: 445 PWDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKIDESVDLTYVANQLKGYSGADI 504

Query: 254 RDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSH 313
            ++C+E  +++ R  I  AG T      P+              Q+  L ++ + L  S+
Sbjct: 505 TNVCREASMMSMRRKI--AGLT------PE--------------QIRQLATEEVDLPVSN 542

Query: 314 --FERAKEKCRKSVDGALIRKYKRWNELYGS 342
             F  A  +C KSV  A + KY++W   +GS
Sbjct: 543 KDFNEAMSRCNKSVSRADLDKYEKWMMEFGS 573

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442617504|ref|NP_001262276.1| katanin 60, isoform B [Drosophila melanogaster] gi|440217084|gb|AGB95659.1| katanin 60, isoform B [Drosophila melanogaster]

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/343 (45%), Positives = 214/343 (62%), Gaps = 39/343 (11%)

Query: 17  EKGKPRTGVP---KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLL 73
           E G P+       K  PN     EL  ++E+DI+Q D  V W DIA L + K++ +E ++
Sbjct: 284 ENGDPQAAQEEERKFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVV 343

Query: 74  LPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES 133
           LP LMP  FKGI RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFFNV  ++LTSK+ GES
Sbjct: 344 LPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGES 403

Query: 134 EKLVRALFETARARAPAVIFIDEVDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD 190
           EK+VR LFE AR  AP+ IFIDE+D+ CS      EHEA+RRV+ ELL  MDGVG G   
Sbjct: 404 EKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVGGGEEQ 463

Query: 191 -KGVLVLAATNHPWDLDEALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATL 241
            K V+VLAATN PWD+DEAL+RR EKRI  P+        ++ + L E++ D +VD+  +
Sbjct: 464 AKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKVDDSVDLTYV 523

Query: 242 SKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAP 301
           + +L GYSG+DI ++C+E  +++ R  I  AG T      P+              Q+  
Sbjct: 524 ANELKGYSGADITNVCREASMMSMRRKI--AGLT------PE--------------QIRQ 561

Query: 302 LGSDRIVLNRSH--FERAKEKCRKSVDGALIRKYKRWNELYGS 342
           L ++ + L  S+  F  A  +C KSV  A + KY++W   +GS
Sbjct: 562 LATEEVDLPVSNKDFNEAMSRCNKSVSRADLDKYEKWMREFGS 604

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195111694|ref|XP_002000413.1| GI10218 [Drosophila mojavensis] gi|193917007|gb|EDW15874.1| GI10218 [Drosophila mojavensis]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/330 (46%), Positives = 210/330 (63%), Gaps = 36/330 (10%)

Query: 27  KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL 86
           K  PN     EL  ++E+DI+Q D  V W DIA L + K++ +E ++LP LMP  FKGI 
Sbjct: 272 KFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFKGIR 331

Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFFNV  ++LTSK+ GESEK+VR LFE AR 
Sbjct: 332 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARF 391

Query: 147 RAPAVIFIDEVDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD-KGVLVLAATNHP 202
            AP+ IFIDE+D+ CS      EHEA+RRV+ ELL  MDGVG G    K V+VLAATN P
Sbjct: 392 YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFP 451

Query: 203 WDLDEALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           WD+DEAL+RR EKRI  P+        ++ + L E++ D +VD+  ++ QL GYSG+DI 
Sbjct: 452 WDIDEALRRRLEKRIYIPLPTDEGREALLKINLREVKVDDSVDLNYVANQLEGYSGADIT 511

Query: 255 DLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSH- 313
           ++C+E  +++ R  I  AG T      P+              Q+  L ++ + L  S+ 
Sbjct: 512 NVCREASMMSMRRKI--AGLT------PE--------------QIRQLATEEVDLPVSNK 549

Query: 314 -FERAKEKCRKSVDGALIRKYKRWNELYGS 342
            F  A  +C KSV  A + KY++W   +GS
Sbjct: 550 DFNEAISRCNKSVSRADLDKYEKWMREFGS 579

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194898677|ref|XP_001978894.1| GG11155 [Drosophila erecta] gi|190650597|gb|EDV47852.1| GG11155 [Drosophila erecta]

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/330 (46%), Positives = 211/330 (63%), Gaps = 36/330 (10%)

Query: 27  KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL 86
           K  PN     EL  ++E+DI+Q D  V W DIA L + K++ +E ++LP LMP  FKGI 
Sbjct: 264 KFQPNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFKGIR 323

Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFFNV  ++LTSK+ GESEK+VR LFE AR 
Sbjct: 324 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARF 383

Query: 147 RAPAVIFIDEVDAFCS---GSREHEATRRVRCELLSHMDGVGTGSGD-KGVLVLAATNHP 202
            AP+ IFIDE+D+ CS      EHEA+RRV+ ELL  MDGVG G    K V+VLAATN P
Sbjct: 384 YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFP 443

Query: 203 WDLDEALKRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           WD+DEAL+RR EKRI  P+        ++ + L E++ D +VD+  ++ +L GYSG+DI 
Sbjct: 444 WDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKVDDSVDLTYVANELKGYSGADIT 503

Query: 255 DLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSH- 313
           ++C+E  +++ R  I  AG T      P+              Q+  L ++ + L  S+ 
Sbjct: 504 NVCREASMMSMRRKI--AGLT------PE--------------QIRQLATEEVDLPVSNK 541

Query: 314 -FERAKEKCRKSVDGALIRKYKRWNELYGS 342
            F  A  +C KSV  A + KY++W + +GS
Sbjct: 542 DFNEAMSRCNKSVSRADLDKYEKWMKEFGS 571

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
FB|FBgn0040208	572	Kat60 "Katanin 60" [Drosophila	0.892	0.534	0.463	2.2e-66
ZFIN|ZDB-GENE-050522-514	485	katna1 "katanin p60 (ATPase-co	0.833	0.589	0.468	1.3e-65
FB|FBgn0037375	673	kat-60L1 "katanin p60-like 1"	0.865	0.441	0.445	6e-64
UNIPROTKB|O61577	516	KATNA1 "Katanin p60 ATPase-con	0.749	0.498	0.488	7.7e-64
UNIPROTKB|B5X3X5	486	katna1 "Katanin p60 ATPase-con	0.833	0.588	0.467	9.7e-64
UNIPROTKB|E1BSZ5	489	KATNAL1 "Uncharacterized prote	0.833	0.584	0.467	1.6e-63
UNIPROTKB|E1BHF2	490	KATNAL1 "Uncharacterized prote	0.833	0.583	0.467	2.6e-63
UNIPROTKB|F1MAX6	499	KATNAL1 "Uncharacterized prote	0.833	0.573	0.467	2.6e-63
UNIPROTKB|O75449	491	KATNA1 "Katanin p60 ATPase-con	0.833	0.582	0.470	2.6e-63
UNIPROTKB|E2QSK3	492	KATNAL1 "Uncharacterized prote	0.833	0.581	0.461	4.2e-63

FB|FBgn0040208 Kat60 "Katanin 60" [Drosophila melanogaster (taxid:7227)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 158/341 (46%), Positives = 213/341 (62%)

Query:    17 EKGKPRTGVP---KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLL 73
             E G P+       K   N     EL  ++E+DI+Q D  V W DIA L + K++ +E ++
Sbjct:   251 ENGDPQAAQEEERKFQTNNHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVV 310

Query:    74 LPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES 133
             LP LMP  FKGI RPW+G+L+ GPPGTGKT+LAKAVA++ G+TFFNV  ++LTSK+ GES
Sbjct:   311 LPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGES 370

Query:   134 EKLVRALFETARARAPAVIFIDEVDAFCS--GSR-EHEATRRVRCELLSHMDGVGTGSGD 190
             EK+VR LFE AR  AP+ IFIDE+D+ CS  GS  EHEA+RRV+ ELL  MDGVG G   
Sbjct:   371 EKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGVGGGEEQ 430

Query:   191 -KGVLVLAATNHPWDLDEALKRRFEKRIS-PIQ-------IIGLCLGEIRKDPNVDVATL 241
              K V+VLAATN PWD+DEAL+RR EKRI  P+        ++ + L E++ D +VD+  +
Sbjct:   431 AKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPSDEGREALLKINLREVKVDDSVDLTYV 490

Query:   242 SKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAP 301
             + +L GYSG+DI ++C+E  +++ R  I  AG T     P   R            Q+A 
Sbjct:   491 ANELKGYSGADITNVCREASMMSMRRKI--AGLT-----PEQIR------------QLAT 531

Query:   302 LGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS 342
                D  V N+  F  A  +C KSV  A + KY++W   +GS
Sbjct:   532 EEVDLPVSNKD-FNEAMSRCNKSVSRADLDKYEKWMREFGS 571

GO:0008352 "katanin complex" evidence=ISS;NAS

GO:0051013 "microtubule severing" evidence=ISS;IDA;IMP;NAS

GO:0007017 "microtubule-based process" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008568 "microtubule-severing ATPase activity" evidence=IDA;IMP

GO:0005813 "centrosome" evidence=IDA

GO:0070462 "plus-end specific microtubule depolymerization" evidence=IMP

GO:0000091 "mitotic anaphase A" evidence=IMP

GO:0005694 "chromosome" evidence=IDA

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0022416 "chaeta development" evidence=IGI

GO:0035220 "wing disc development" evidence=IGI

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0007019 "microtubule depolymerization" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0030336 "negative regulation of cell migration" evidence=IMP

GO:0031252 "cell leading edge" evidence=IDA

ZFIN|ZDB-GENE-050522-514 katna1 "katanin p60 (ATPase-containing) subunit A 1" [Danio rerio (taxid:7955)]

 Score = 641 (230.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
 Identities = 150/320 (46%), Positives = 202/320 (63%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DI+  +  V WDDIA L+  K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct:   185 DLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 244

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct:   245 PPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 304

Query:   157 VDAFCS--G-SREHEATRRVRCELLSHMDGVG-TGSGD--KGVLVLAATNHPWDLDEALK 210
             +D+ CS  G S EHEA+RRV+ ELL  MDGVG T   D  K V+VLAATN PWD+DEAL+
Sbjct:   305 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALR 364

Query:   211 RRFEKRIS-P-------IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIIL 262
             RR EKRI  P       + ++ + L E+    +V++  +++Q+ GYSG+DI ++C++  L
Sbjct:   365 RRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASL 424

Query:   263 IAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR 322
             +A R  I+  G T     P + RN              P     +      FE A +K  
Sbjct:   425 MAMRRRIE--GLT-----PEEIRN-------------LPKDEMHMPTTMEDFETALKKVS 464

Query:   323 KSVDGALIRKYKRWNELYGS 342
             KSV  A + KY++W   +GS
Sbjct:   465 KSVSAADLEKYEKWIAEFGS 484

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0048675 "axon extension" evidence=IGI;IMP

GO:0030496 "midbody" evidence=ISS

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005819 "spindle" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

FB|FBgn0037375 kat-60L1 "katanin p60-like 1" [Drosophila melanogaster (taxid:7227)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 150/337 (44%), Positives = 210/337 (62%)

Query:    26 PKVGPNRRA---NP-----ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKL 77
             PK  P  +A   +P      L   +EKDI+Q    + W D+AGL+  K I +E ++LP +
Sbjct:   356 PKCSPKTKAKHFSPLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVI 415

Query:    78 MPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLV 137
             MP+ FKGI RPWRG+L+ GPPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLV
Sbjct:   416 MPEFFKGIRRPWRGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLV 475

Query:   138 RALFETARARAPAVIFIDEVDAFCS--GS-REHEATRRVRCELLSHMDGVGTG-SGDKGV 193
             R LFE AR  AP+ IFIDE+DA C+  GS  EHEA+RR + ELL  MDG+      +K +
Sbjct:   476 RLLFEMARFYAPSTIFIDEIDALCASRGSDSEHEASRRFKAELLIQMDGLNASMQEEKVI 535

Query:   194 LVLAATNHPWDLDEALKRRFEKRIS-PIQ-------IIGLCLGEIRKDPNVDVATLSKQL 245
             +VLAATNHPWD+DEA +RRFEKRI  P+        ++ LCL ++   P+++   +  +L
Sbjct:   536 MVLAATNHPWDIDEAFRRRFEKRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDEL 595

Query:   246 IGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSD 305
              GYSGSDI ++C++  ++A R +I        + + PD    I  +  D      P    
Sbjct:   596 QGYSGSDISNVCRDASMMAMRRLI--------SGRTPDQIKQIRREEVDQ-----P---- 638

Query:   306 RIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS 342
              I L    F+ A+ + +KSV    + ++++W E YGS
Sbjct:   639 -ITLQ--DFQDARLRTKKSVSADDVARFEKWMEEYGS 672

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0051013 "microtubule severing" evidence=ISS

GO:0008352 "katanin complex" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0007017 "microtubule-based process" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IMP

GO:0005874 "microtubule" evidence=IDA

GO:0050775 "positive regulation of dendrite morphogenesis" evidence=IMP

UNIPROTKB|O61577 KATNA1 "Katanin p60 ATPase-containing subunit A1" [Strongylocentrotus purpuratus (taxid:7668)]

 Score = 623 (224.4 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 133/272 (48%), Positives = 186/272 (68%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DIVQ +  V W DIAGL   K++ +E ++LP  MP  FKGI RPW+G+L+ G
Sbjct:   215 DLVENLERDIVQRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFKGIRRPWKGVLMVG 274

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKT+LAKAVA++ G+TFFNV  +SLTSK++GESEKLVR LFE AR  AP+ IFIDE
Sbjct:   275 PPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDE 334

Query:   157 VDAFCS--GS-REHEATRRVRCELLSHMDGV-GTGSGD---KGVLVLAATNHPWDLDEAL 209
             +D+ CS  G+  EHEA+RRV+ ELL  MDGV G  +G+   K V+VLAATN PWD+DEAL
Sbjct:   335 IDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEAL 394

Query:   210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
             +RR EKRI  P+       Q++ + L E+    ++D+ ++++++ GYSG+DI ++C++  
Sbjct:   395 RRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDAS 454

Query:   262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGD 293
             ++A R  IQ      +   P +  N      D
Sbjct:   455 MMAMRRRIQGLRPEEIRHIPKEELNQPSTPAD 486

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

UNIPROTKB|B5X3X5 katna1 "Katanin p60 ATPase-containing subunit A1" [Salmo salar (taxid:8030)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 150/321 (46%), Positives = 207/321 (64%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DI+  +  V WDDIA L+  K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct:   185 DLIEALERDIISQNPNVKWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 244

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct:   245 PPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDE 304

Query:   157 VDAFCS--G-SREHEATRRVRCELLSHMDGVGTGSGD----KGVLVLAATNHPWDLDEAL 209
             +D+ CS  G S EHEA+RRV+ ELL  MDGVG  S +    K V+VLAATN PWD+DEAL
Sbjct:   305 IDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEAL 364

Query:   210 KRRFEKRIS---P-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
             +RR EKRI    P     ++++ + L E+    +VD+A +++Q  GYSG+DI ++C++  
Sbjct:   365 RRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDAS 424

Query:   262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
             L+A R  I+  G T      P+   NI      S+ ++       +      FE + +K 
Sbjct:   425 LMAMRRRIE--GLT------PEEIRNI------SRAEM------HMPTTMEDFESSLKKV 464

Query:   322 RKSVDGALIRKYKRWNELYGS 342
              KSV  + + KY++W E +GS
Sbjct:   465 SKSVSASDLEKYEKWIEEFGS 485

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

UNIPROTKB|E1BSZ5 KATNAL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 150/321 (46%), Positives = 210/321 (65%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DIV  +  + WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+ G
Sbjct:   188 DLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVG 247

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  APA IFIDE
Sbjct:   248 PPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPATIFIDE 307

Query:   157 VDAFCS--G-SREHEATRRVRCELLSHMDGVGTG--SGD--KGVLVLAATNHPWDLDEAL 209
             +D+ CS  G S EHEA+RRV+ ELL  MDGVG    + D  K V+VLAATN PWD+DEAL
Sbjct:   308 IDSICSRRGTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 367

Query:   210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
             +RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++  
Sbjct:   368 RRRLEKRIYIPLPTAKGRAELLKINLREVELDPDISLEEIAEKIEGYSGADITNVCRDAS 427

Query:   262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
             L+A R  I   G T      P+    I A    SK ++      ++ + +  FE A +K 
Sbjct:   428 LMAMRRRIN--GLT------PE---EIRAL---SKEEL------QMPVTKGDFELALKKI 467

Query:   322 RKSVDGALIRKYKRWNELYGS 342
              KSV  A + KY++W   +GS
Sbjct:   468 SKSVSAADLEKYEKWMAEFGS 488

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BHF2 KATNAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 150/321 (46%), Positives = 208/321 (64%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DIV  +  V WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+ G
Sbjct:   189 DLVEALERDIVSRNPSVHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVG 248

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct:   249 PPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 308

Query:   157 VDAFCS--G-SREHEATRRVRCELLSHMDGVGTG--SGD--KGVLVLAATNHPWDLDEAL 209
             +D+ CS  G S EHEA+RRV+ ELL  MDGVG    + D  K V+VLAATN PWD+DEAL
Sbjct:   309 IDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 368

Query:   210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
             +RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++  
Sbjct:   369 RRRLEKRIYIPLPTAKGRTELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428

Query:   262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
             L+A R  I        N   P+    I A    SK ++      ++ + R  FE A +K 
Sbjct:   429 LMAMRRRI--------NGLSPE---EIRAL---SKEEL------QMPVTRGDFELALKKI 468

Query:   322 RKSVDGALIRKYKRWNELYGS 342
              KSV  A + KY++W   +GS
Sbjct:   469 AKSVSAADLEKYEKWMVEFGS 489

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F1MAX6 KATNAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 150/321 (46%), Positives = 208/321 (64%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DIV  +  V WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+ G
Sbjct:   198 DLVEALERDIVSRNPSVHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVG 257

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct:   258 PPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 317

Query:   157 VDAFCS--G-SREHEATRRVRCELLSHMDGVGTG--SGD--KGVLVLAATNHPWDLDEAL 209
             +D+ CS  G S EHEA+RRV+ ELL  MDGVG    + D  K V+VLAATN PWD+DEAL
Sbjct:   318 IDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 377

Query:   210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
             +RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++  
Sbjct:   378 RRRLEKRIYIPLPTAKGRTELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 437

Query:   262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
             L+A R  I        N   P+    I A    SK ++      ++ + R  FE A +K 
Sbjct:   438 LMAMRRRI--------NGLSPE---EIRAL---SKEEL------QMPVTRGDFELALKKI 477

Query:   322 RKSVDGALIRKYKRWNELYGS 342
              KSV  A + KY++W   +GS
Sbjct:   478 AKSVSAADLEKYEKWMVEFGS 498

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|O75449 KATNA1 "Katanin p60 ATPase-containing subunit A1" [Homo sapiens (taxid:9606)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 151/321 (47%), Positives = 207/321 (64%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DI+  +  V WDDIA L   K++ KE ++LP  MP+ FKGI RPW+G+L+ G
Sbjct:   190 DLVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVG 249

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKTLLAKAVA++  +TFFNV  S+LTSK+ GESEKLVR LFE AR  +PA IFIDE
Sbjct:   250 PPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 309

Query:   157 VDAFCS--G-SREHEATRRVRCELLSHMDGVG-TGSGD---KGVLVLAATNHPWDLDEAL 209
             +D+ CS  G S EHEA+RRV+ ELL  MDGVG T   D   K V+VLAATN PWD+DEAL
Sbjct:   310 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEAL 369

Query:   210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
             +RR EKRI  P+       +++ + L E+    +VD+A++++ + GYSG+DI ++C++  
Sbjct:   370 RRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429

Query:   262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
             L+A R  I+  G T      P+   N+      SK ++       +      FE A +K 
Sbjct:   430 LMAMRRRIE--GLT------PEEIRNL------SKEEM------HMPTTMEDFEMALKKV 469

Query:   322 RKSVDGALIRKYKRWNELYGS 342
              KSV  A I +Y++W   +GS
Sbjct:   470 SKSVSAADIERYEKWIFEFGS 490

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0051329 "interphase of mitotic cell cycle" evidence=IMP

GO:0000922 "spindle pole" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|E2QSK3 KATNAL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 148/321 (46%), Positives = 208/321 (64%)

Query:    37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
             +L   +E+DIV  +  + WDDIA L+  K++ +E ++LP  MP  FKGI RPW+G+L+ G
Sbjct:   191 DLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVG 250

Query:    97 PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
             PPGTGKT+LAKAVA++ G+TFFNV  S+LTSK+ GESEKLVR LFE AR  AP  IFIDE
Sbjct:   251 PPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDE 310

Query:   157 VDAFCS--G-SREHEATRRVRCELLSHMDGVGTG--SGD--KGVLVLAATNHPWDLDEAL 209
             +D+ CS  G S EHEA+RRV+ ELL  MDGVG    + D  K V+VLAATN PWD+DEAL
Sbjct:   311 IDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 370

Query:   210 KRRFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
             +RR EKRI  P+       +++ + L E+  DP++ +  +++++ GYSG+DI ++C++  
Sbjct:   371 RRRLEKRIYIPLPTAKGRTELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 430

Query:   262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC 321
             L+A R  I   G        P+    I A    SK ++      ++ + +  FE A +K 
Sbjct:   431 LMAMRRRINGLG--------PE---EIRAL---SKEEL------QMPVTKGDFELALKKI 470

Query:   322 RKSVDGALIRKYKRWNELYGS 342
              KSV  A + KY++W   +GS
Sbjct:   471 AKSVSAADLEKYEKWMVEFGS 491

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52917	VPS4_YEAST	No assigned EC number	0.4301	0.7667	0.6018	yes	N/A
Q9SEX2	KTNA1_ARATH	3, ., 6, ., 4, ., 3	0.4112	0.9183	0.6022	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	343
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	5e-66
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	2e-50
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	1e-49
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	2e-48
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	1e-44
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	5e-42
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	1e-41
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	5e-39
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	6e-39
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	2e-38
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	4e-36
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	1e-29
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	1e-28
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	9e-28
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	8e-26
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	9e-26
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	3e-21
smart00382	148	smart00382, AAA, ATPases associated with a variety	3e-15
CHL00195	489	CHL00195, ycf46, Ycf46; Provisional	3e-09
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	6e-09
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	1e-07
pfam13401	124	pfam13401, AAA_22, AAA domain	8e-07
pfam07724	168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	8e-06
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	1e-05
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	1e-05
COG1474	366	COG1474, CDC6, Cdc6-related protein, AAA superfami	7e-05
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	1e-04
TIGR00382	413	TIGR00382, clpX, endopeptidase Clp ATP-binding reg	3e-04
COG1219	408	COG1219, ClpX, ATP-dependent protease Clp, ATPase	3e-04
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	7e-04
COG0466	782	COG0466, Lon, ATP-dependent Lon protease, bacteria	0.001
COG0542	786	COG0542, clpA, ATP-binding subunits of Clp proteas	0.001
PRK13341	725	PRK13341, PRK13341, recombination factor protein R	0.002
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	0.002
PRK05342	412	PRK05342, clpX, ATP-dependent protease ATP-binding	0.003
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	0.003
pfam07726	131	pfam07726, AAA_3, ATPase family associated with va	0.003
pfam13207	114	pfam13207, AAA_17, AAA domain	0.004
pfam01057	271	pfam01057, Parvo_NS1, Parvovirus non-structural pr	0.004

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score =  215 bits (550), Expect = 5e-66
 Identities = 108/246 (43%), Positives = 148/246 (60%), Gaps = 18/246 (7%)

Query: 40  ALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPP 98
            L  + ++  D  V  DDI GL+  K+  KE +  P   P+LF+ + LRP +G+LL+GPP
Sbjct: 226 VLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPP 285

Query: 99  GTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVD 158
           GTGKTLLAKAVA +  S F +V  S L SK  GESEK +R LFE AR  AP++IFIDE+D
Sbjct: 286 GTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEID 345

Query: 159 AFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFE 214
           +  S  G  E  + RRV  +LL+ +DG+      +GVLV+AATN P DLD AL R  RF+
Sbjct: 346 SLASGRGPSEDGSGRRVVGQLLTELDGI---EKAEGVLVIAATNRPDDLDPALLRPGRFD 402

Query: 215 KRIS---P-----IQIIGLCLGEIRK--DPNVDVATLSKQLIGYSGSDIRDLCQEIILIA 264
           + I    P     ++I  + L + +     +VD+  L++   GYSG+DI  L +E  L A
Sbjct: 403 RLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEA 462

Query: 265 AREVIQ 270
            RE  +
Sbjct: 463 LREARR 468

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  178 bits (452), Expect = 2e-50
 Identities = 106/303 (34%), Positives = 159/303 (52%), Gaps = 36/303 (11%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V W DI GL+ VKQ  +E +  P   P++F+ + +RP +G+LLFGPPGTGKTLLAKAVA+
Sbjct: 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC--SGSREHEA 169
           + G+ F  V    + SK  GESEK +R +F  AR  APA+IF DE+DA     G+R   +
Sbjct: 510 ESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTS 569

Query: 170 -TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--------S 218
            T R+  +LL+ MDG+        V+V+AATN P  LD AL R  RF++ I        +
Sbjct: 570 VTDRIVNQLLTEMDGI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEA 626

Query: 219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVN 278
             +I  +    +    +VD+  L++   GY+G+DI  +C+E  + A RE I +       
Sbjct: 627 RKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS------- 679

Query: 279 SKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNE 338
             P   +  +G +               + +   HF  A +K + SV    + +Y+R  +
Sbjct: 680 --PAKEKLEVGEEEFLKD----------LKVEMRHFLEALKKVKPSVSKEDMLRYERLAK 727

Query: 339 LYG 341
              
Sbjct: 728 ELK 730

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  170 bits (433), Expect = 1e-49
 Identities = 98/235 (41%), Positives = 139/235 (59%), Gaps = 27/235 (11%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLAKAVA 110
           V ++DI GLD   Q  +E + LP   P+LF+  GI  P +G+LL+GPPGTGKTLLAKAVA
Sbjct: 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVA 206

Query: 111 SQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF--------CS 162
           +Q  +TF  V+ S L  K+ GE  +LVR LFE AR +AP++IFIDE+DA          S
Sbjct: 207 NQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTS 266

Query: 163 GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--- 217
           G RE    +R   ELL+ +DG     G+  V V+ ATN P  LD AL R  RF+++I   
Sbjct: 267 GDRE---VQRTMLELLNQLDGFDP-RGN--VKVIMATNRPDILDPALLRPGRFDRKIEFP 320

Query: 218 -----SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
                   +I+ +   ++    +VD+  L++   G+SG+D++ +C E  + A RE
Sbjct: 321 LPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375

Length = 406

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score =  167 bits (425), Expect = 2e-48
 Identities = 92/236 (38%), Positives = 136/236 (57%), Gaps = 27/236 (11%)

Query: 52  GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLAKAV 109
            V ++DI GL+   +  +E + LP   P+LF+  GI  P +G+LL+GPPGTGKTLLAKAV
Sbjct: 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAV 185

Query: 110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF--------C 161
           A +  +TF  V+ S L  K  GE  +LVR LFE AR +AP++IFIDE+DA          
Sbjct: 186 AHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGT 245

Query: 162 SGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI-- 217
           SG RE    +R   +LL+ MDG     G+  V ++AATN    LD A+ R  RF++ I  
Sbjct: 246 SGDRE---VQRTLMQLLAEMDGFDP-RGN--VKIIAATNRIDILDPAILRPGRFDRIIEV 299

Query: 218 ------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
                   ++I+ +   ++    +VD+  L++   G SG+D++ +C E  + A R+
Sbjct: 300 PLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355

Length = 389

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score =  149 bits (378), Expect = 1e-44
 Identities = 67/129 (51%), Positives = 84/129 (65%), Gaps = 5/129 (3%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
           +LL+GPPGTGKT LAKAVA + G+ F  +  S L SK+ GESEK +R LFE A+  AP V
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60

Query: 152 IFIDEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL 209
           IFIDE+DA     GS     +RRV  +LL+ +DG    S    V+V+AATN P  LD AL
Sbjct: 61  IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGF--TSSLSKVIVIAATNRPDKLDPAL 118

Query: 210 KR-RFEKRI 217
            R RF++ I
Sbjct: 119 LRGRFDRII 127

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score =  149 bits (378), Expect = 5e-42
 Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 25/234 (10%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V ++DI GL+   +  +E + LP   P+LF+ + + P +G+LL+GPPGTGKTLLAKAVA 
Sbjct: 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 178

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC--------SG 163
           +  +TF  V+ S L  K+ GE  +LVR +FE A+ +AP++IFIDE+DA          SG
Sbjct: 179 ETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSG 238

Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS--- 218
            RE    +R   +LL+ +DG     G+  V V+AATN P  LD AL R  RF++ I    
Sbjct: 239 DRE---VQRTLMQLLAELDGFDP-RGN--VKVIAATNRPDILDPALLRPGRFDRIIEVPL 292

Query: 219 -----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
                 ++I+ +   +++   +VD+  ++K   G SG+D++ +C E  + A RE
Sbjct: 293 PDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  153 bits (389), Expect = 1e-41
 Identities = 90/234 (38%), Positives = 137/234 (58%), Gaps = 24/234 (10%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V ++DI GL   K+  +E + LP   P+LF+ + + P +G+LL+GPPGTGKTLLAKAVA+
Sbjct: 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE--HEA 169
           + G+ F ++    + SK+YGESE+ +R +F+ A   AP++IFIDE+DA      E   E 
Sbjct: 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEV 294

Query: 170 TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRISPIQIIGLCL 227
            +RV  +LL+ MDG+    G   V+V+ ATN P  LD AL+R  RF++ I    +I +  
Sbjct: 295 EKRVVAQLLTLMDGL---KGRGRVIVIGATNRPDALDPALRRPGRFDREI----VIRVPD 347

Query: 228 GEIRKD------------PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269
              RK+             +VD+  L++   G+ G+D+  L +E  + A R  I
Sbjct: 348 KRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFI 401

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score =  142 bits (359), Expect = 5e-39
 Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 23/233 (9%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V + DI GLD  KQ  +E + LP   P+L++ I + P RG+LL+GPPGTGKT+LAKAVA 
Sbjct: 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEA-- 169
              +TF  V+ S    K+ GE  ++VR +F  AR  AP++IFIDEVD+    ++  +A  
Sbjct: 202 HTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSI--ATKRFDAQT 259

Query: 170 -----TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS-PIQ 221
                 +R+  ELL+ MDG         V V+ ATN    LD AL R  R +++I  P+ 
Sbjct: 260 GADREVQRILLELLNQMDGFDQ---TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316

Query: 222 -------IIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
                  I      ++     VD+     +    S +DI  +CQE  + A R+
Sbjct: 317 DRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369

Length = 398

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score =  143 bits (364), Expect = 6e-39
 Identities = 89/237 (37%), Positives = 129/237 (54%), Gaps = 26/237 (10%)

Query: 50  DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKA 108
              V + D+AG+D  K+   E +   K  P  F  +  +  +G+LL GPPGTGKTLLAKA
Sbjct: 49  KPKVTFKDVAGIDEAKEELMEIVDFLK-NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKA 107

Query: 109 VASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------F 160
           VA + G  FF++  S       G     VR LFE A+  AP +IFIDE+DA         
Sbjct: 108 VAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL 167

Query: 161 CSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI- 217
             G+ E E T     +LL  MDG GT   + GV+V+AATN P  LD AL R  RF++++ 
Sbjct: 168 GGGNDEREQTLN---QLLVEMDGFGT---NTGVIVIAATNRPDVLDPALLRPGRFDRQVV 221

Query: 218 --SP-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
              P      +I+ +     +  P+VD+  ++++  G+SG+D+ +L  E  L+AAR+
Sbjct: 222 VDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK 278

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score =  141 bits (357), Expect = 2e-38
 Identities = 90/236 (38%), Positives = 134/236 (56%), Gaps = 33/236 (13%)

Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQH 113
           + DI GL+   Q  KE + LP   P+L+  I ++P +G++L+GPPGTGKTLLAKAVA++ 
Sbjct: 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241

Query: 114 GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEAT--- 170
            +TF  V+ S L  K+ G+  KLVR LF  A   AP+++FIDE+DA   G++ ++AT   
Sbjct: 242 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAI--GTKRYDATSGG 299

Query: 171 ----RRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--------------- 211
               +R   ELL+ +DG  +  GD  V V+ ATN    LD AL R               
Sbjct: 300 EKEIQRTMLELLNQLDGFDS-RGD--VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356

Query: 212 RFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           + ++RI  I    + L E   D +++   ++K  +  SG+DI+ +C E  L+A RE
Sbjct: 357 KTKRRIFEIHTSKMTLAE---DVDLEEFIMAKDEL--SGADIKAICTEAGLLALRE 407

Length = 438

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score =  137 bits (347), Expect = 4e-36
 Identities = 84/239 (35%), Positives = 132/239 (55%), Gaps = 26/239 (10%)

Query: 50  DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKA 108
           DTG+ + DIAG++  K+ F+E +   K  P+ F  +  +  +G+LL GPPGTGKTLLAKA
Sbjct: 177 DTGITFRDIAGIEEAKEEFEEVVSFLK-KPERFTAVGAKIPKGVLLVGPPGTGKTLLAKA 235

Query: 109 VASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC------- 161
           +A +    FF++  S       G     VR LF+ A+  +P ++FIDE+DA         
Sbjct: 236 IAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGI 295

Query: 162 -SGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS 218
             G+ E E T     +LL+ MDG     G+KGV+V+AATN    LD AL R  RF+++I+
Sbjct: 296 GGGNDEREQTLN---QLLTEMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQIT 349

Query: 219 ---P-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI 269
              P     + I+ +     +  P+V +  ++++  G+SG+D+ +L  E  ++ AR   
Sbjct: 350 VSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK 408

Length = 638

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score =  118 bits (298), Expect = 1e-29
 Identities = 90/242 (37%), Positives = 129/242 (53%), Gaps = 36/242 (14%)

Query: 50  DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLAK 107
              V + D+AG+D  K+   E L+     P+ ++  G   P +G+LL GPPGTGKTLLAK
Sbjct: 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLAK 201

Query: 108 AVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA-------- 159
           AVA + G  FF++  S       G     VR LFE A+  AP +IFIDE+DA        
Sbjct: 202 AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 261

Query: 160 FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI 217
              G+ E E T     +LL  MDG G   G++GV+V+AATN P  LD AL R  RF+++I
Sbjct: 262 LGGGNDEREQT---LNQLLVEMDGFG---GNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315

Query: 218 SPIQIIGLCLGEIRK------------DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265
               ++ L   + R+              +VD+  +++   G+SG+D+ +L  E  L+AA
Sbjct: 316 ----LVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAA 371

Query: 266 RE 267
           R 
Sbjct: 372 RR 373

Length = 596

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score =  116 bits (292), Expect = 1e-28
 Identities = 79/228 (34%), Positives = 119/228 (52%), Gaps = 24/228 (10%)

Query: 57  DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST 116
           D+AG D  K+   E +   +   +  K   +  +G+L+ GPPGTGKTLLAKA+A +    
Sbjct: 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212

Query: 117 FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSGSREHE 168
           FF +  S       G     VR +FE A+  AP +IFIDE+DA           G  E E
Sbjct: 213 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 272

Query: 169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--------S 218
            T     ++L  MDG     G++G++V+AATN P  LD AL R  RF++++         
Sbjct: 273 QTLN---QMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326

Query: 219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266
             QI+ + +  +   P++D A +++   G+SG+D+ +L  E  L AAR
Sbjct: 327 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 374

Length = 644

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score =  111 bits (278), Expect = 9e-28
 Identities = 68/215 (31%), Positives = 115/215 (53%), Gaps = 25/215 (11%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLM-PQLFKGILRPW--RGILLFGPPGTGKTLLAKAVASQ 112
           DD+ G +  K+  K  L++  L  P+ F      W  + +L +GPPGTGKT++AKA+A++
Sbjct: 121 DDVIGQEEAKR--KCRLIMEYLENPERF----GDWAPKNVLFYGPPGTGKTMMAKALANE 174

Query: 113 HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATR- 171
                  V  + L  +H G+  + +  L+E AR  AP ++FIDE+DA  +  R ++  R 
Sbjct: 175 AKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAI-ALDRRYQELRG 233

Query: 172 ---RVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI-----SPIQII 223
               +   LL+ +DG+      +GV+ +AATN P  LD A++ RFE+ I     +  + +
Sbjct: 234 DVSEIVNALLTELDGIKEN---EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERL 290

Query: 224 GLCLGEIRKDP---NVDVATLSKQLIGYSGSDIRD 255
            +     +K P   + D+  L+ +  G SG DI++
Sbjct: 291 EILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKE 325

Length = 368

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score =  107 bits (269), Expect = 8e-26
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 32/219 (14%)

Query: 18  KGKPRTG-----VPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETL 72
               R G      P+ G    A P     VE  +++    V + DI GL +  +  ++ +
Sbjct: 141 DEGLRPGDTLLVDPRAGYAFEAIPR--TEVEDLVLEEVPDVTYADIGGLGSQIEQIRDAV 198

Query: 73  LLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVA---------SQHGSTFF-NVL 121
            LP L P+L++   L+P +G+LL+GPPG GKTL+AKAVA            G ++F N+ 
Sbjct: 199 ELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAVANSLAARIGAEGGGKSYFLNIK 258

Query: 122 PSSLTSKHYGESEKLVRALFETARARA----PAVIFIDEVDAFC----SG-SREHEATRR 172
              L +K+ GE+E+ +R +F+ AR +A    P ++F DE+D+      SG S + E T  
Sbjct: 259 GPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFDEMDSLFRTRGSGVSSDVETT-- 316

Query: 173 VRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR 211
           V  +LL+ +DGV        V+V+ A+N    +D A+ R
Sbjct: 317 VVPQLLAEIDGV---ESLDNVIVIGASNREDMIDPAILR 352

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score =  107 bits (268), Expect = 9e-26
 Identities = 83/214 (38%), Positives = 116/214 (54%), Gaps = 26/214 (12%)

Query: 74  LPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGE 132
           LP   P+LFK + + P +G+LL GPPGTGKTLLA+A+A   G+ F ++    + SK+ GE
Sbjct: 2   LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALA-NEGAEFLSINGPEILSKYVGE 60

Query: 133 SEKLVRALFETARARAPAVIFIDEVDAFC--SGSREHEATRRVRCELLSHMDGVGTGSGD 190
           SE  +R LFE A   AP++IFIDE+DA      S + E  RRV  +LL+ MDG+  G   
Sbjct: 61  SELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-- 118

Query: 191 KGVLVLAATNHPWDLDEALKR--RFEKRISPIQIIGLCLGEIRKD------------PNV 236
             V+V+ ATN P  LD A +R  RF++ I     + L     R +            P  
Sbjct: 119 --VIVIGATNRPDGLDPAKRRPGRFDREIE----VNLPDEAGRLEILQIHTRLMFLGPPG 172

Query: 237 DVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ 270
              TL+ + +G SG+D+  L +E  L   R  I 
Sbjct: 173 TGKTLAARTVGKSGADLGALAKEAALRELRRAID 206

Length = 494

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 88.4 bits (219), Expect = 3e-21
 Identities = 53/140 (37%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 86  LRPWRGILLFGPPGTGKTLLAKAVA---SQHGSTFFNVLPSSLTSKHYGESEK---LVRA 139
           L P + +LL+GPPGTGKT LA+A+A    + G+ F  +  S L             LVR 
Sbjct: 16  LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75

Query: 140 LFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT 199
           LFE A    P V+FIDE+D+         A  RV   L +  D        + V V+ AT
Sbjct: 76  LFELAEKAKPGVLFIDEIDSL--SRGAQNALLRV---LETLNDLRIDR---ENVRVIGAT 127

Query: 200 NHPW--DLDEALKRRFEKRI 217
           N P   DLD AL  R + RI
Sbjct: 128 NRPLLGDLDRALYDRLDIRI 147

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 71.6 bits (175), Expect = 3e-15
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 88  PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-----------------PSSLTSKHY 130
           P   IL+ GPPG+GKT LA+A+A + G     V+                       K  
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 131 GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGD 190
           G  E  +R     AR   P V+ +DE+ +     +E          LL  +        +
Sbjct: 61  GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLK------SE 114

Query: 191 KGVLVLAATNHPWDLDEA-LKRRFEKRI 217
           K + V+  TN   DL  A L+RRF++RI
Sbjct: 115 KNLTVILTTNDEKDLGPALLRRRFDRRI 142

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 67/229 (29%), Positives = 95/229 (41%), Gaps = 41/229 (17%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFK-----GILRPWRGILLFGPPGTGKTLLAKAVA 110
            DI GLDN+K        L K      K     G+  P RG+LL G  GTGK+L AKA+A
Sbjct: 228 SDIGGLDNLKD------WLKKRSTSFSKQASNYGLPTP-RGLLLVGIQGTGKSLTAKAIA 280

Query: 111 SQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR---EH 167
           +        +    L     GESE  +R +   A A +P +++IDE+D   S S    + 
Sbjct: 281 NDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDS 340

Query: 168 EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RF-----------E 214
             T RV    ++ +           V V+A  N+   L   + R  RF           E
Sbjct: 341 GTTNRVLATFITWL-----SEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395

Query: 215 KRISPIQIIGLCLGEIRKDP--NVDVATLSKQLIGYSGSDIRDLCQEII 261
           +R    +I    L + R       D+  LSK    +SG++I    Q II
Sbjct: 396 EREKIFKIH---LQKFRPKSWKKYDIKKLSKLSNKFSGAEIE---QSII 438

Length = 489

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 44/154 (28%), Positives = 59/154 (38%), Gaps = 39/154 (25%)

Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNV------LPSSLT--------SKHYGESEK 135
             +LL GPPG GKTLLA+A+A   G  F  +      LPS L             GE   
Sbjct: 44  GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRF 103

Query: 136 LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLS-------HMDGVGTGS 188
           +   LF   R     ++ +DE++          A   V+  LL         + G+ T  
Sbjct: 104 VPGPLFAAVR----VILLLDEIN---------RAPPEVQNALLEALEERQVTVPGLTTIR 150

Query: 189 GDKGVLVLAATNHPWD-----LDEALKRRFEKRI 217
                +V+A  N         L EAL  RF  RI
Sbjct: 151 LPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRI 184

Length = 329

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 52.8 bits (128), Expect = 1e-07
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 19/81 (23%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPA- 150
           ++L+GPPGTGKT LA+ +A    + F  +  S++TS       K +R + E AR R  A 
Sbjct: 39  MILWGPPGTGKTTLARIIAGATDAPFEAL--SAVTS-----GVKDLREVIEEARQRRSAG 91

Query: 151 ---VIFIDEV--------DAF 160
              ++FIDE+        DA 
Sbjct: 92  RRTILFIDEIHRFNKAQQDAL 112

Length = 413

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 16/85 (18%)

Query: 92  ILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSSLTS---------------KHYGESEK 135
            +L G  G+GKT L + +A Q        V   SL +                  G + +
Sbjct: 7   GVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPKDLLRKILRALGLPLSGGTTAE 66

Query: 136 LVRALFETARARAPAVIFIDEVDAF 160
           L+ A+ +  + R   ++ IDE    
Sbjct: 67  LLEAILDALKRRGRPLLIIDEAQHL 91

Length = 124

>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 23/85 (27%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLP--------SSLTSKHY-----GESEKLVR 138
            L  GP G GKT LAKA+A                    S    +H      G     V 
Sbjct: 6   FLFLGPTGVGKTELAKALAE-----LLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVG 60

Query: 139 A-----LFETARARAPAVIFIDEVD 158
                 L E  R +  +++ IDE++
Sbjct: 61  YEEGGQLTEAVRRKPYSIVLIDEIE 85

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 15/73 (20%)

Query: 94  LFGPPGTGKTLLAKAVASQHGSTF--FNVLPSSLTSKHYGESEKLVRALFETARARAPA- 150
           L+GPPGTGKT LA+ +A    + F   + + S +         K +R + E AR      
Sbjct: 53  LWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV---------KDLREIIEEARKNRLLG 103

Query: 151 ---VIFIDEVDAF 160
              ++F+DE+  F
Sbjct: 104 RRTILFLDEIHRF 116

Length = 436

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 42/150 (28%)

Query: 91  GILLFGPPGTGKTLLAKAVAS--QHGSTFFNVLPSSLT---------------SKHYGES 133
           G+LL GPPGTGK+ LA+ +A+   +   F+  L    T               S   G  
Sbjct: 1   GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGP- 59

Query: 134 EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSH-----MDGVG-TG 187
             LVRA      AR   +  +DE++      R +         LL        +G     
Sbjct: 60  --LVRA------AREGEIAVLDEIN------RANPDVLNSLLSLLDERRLLLPEGGELVK 105

Query: 188 SGDKGVLVLAATNHP----WDLDEALKRRF 213
           +   G  ++A  N       +L  AL+ RF
Sbjct: 106 AAPDGFRLIATMNPLDRGLNELSPALRSRF 135

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 46/229 (20%), Positives = 71/229 (31%), Gaps = 54/229 (23%)

Query: 81  LFKGILRPWRG--ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES----E 134
                LR  R   I+++GP GTGKT   K V  +   +  NV    +             
Sbjct: 32  FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91

Query: 135 KLVRALFET------------------ARARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176
           K++  L +                   ++     ++ +DEVDA                E
Sbjct: 92  KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------E 141

Query: 177 LLSHMDGVGTGSGDKGVLVLAATNHPW---DLDEALKRRF-EKRI--SP------IQIIG 224
           +L  +           V ++A +N       LD  +K       I   P        I+ 
Sbjct: 142 VLYSLLRAPG-ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILR 200

Query: 225 LCLGEIRKDPNV---DVATLSKQLIGYSGSDIR---DLCQEIILIAARE 267
             + E      V   DV  L   L+     D R   D+ +    IA RE
Sbjct: 201 ERV-EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248

Length = 366

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 28/145 (19%)

Query: 90  RGILLFGPPGTGKTLLAKAVASQHGS-------TFFNVLPSSLTSKHYGESEKLVRALFE 142
             +L  GPPGTGKT +A+ VA  +             V  + L  ++ GESE     + +
Sbjct: 313 NHMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAKTNEIID 372

Query: 143 TARARAPAVIFIDEVDAFCSGSREHEATRRVRCE----LLSHMDGVGTGSGDKGVLVLAA 198
           +A      V+F+DE  A+      +        E    LL+ M+       D+  LV+  
Sbjct: 373 SALGG---VLFLDE--AYTLVETGYGQKDPFGLEAIDTLLARME------NDRDRLVVIG 421

Query: 199 TNHPWDLD------EALKRRFEKRI 217
             +  DLD      E L+ RF + I
Sbjct: 422 AGYRKDLDKFLEVNEGLRSRFTRVI 446

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX)

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-GES-----EKLVRAL-FETA 144
           ILL GP G+GKTLLA+ +A      F     ++LT   Y GE       KL++A  ++  
Sbjct: 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE 178

Query: 145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCE 176
           +A+   +I+IDE+D     S     TR V  E
Sbjct: 179 KAQK-GIIYIDEIDKISRKSENPSITRDVSGE 209

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413

>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 20/80 (25%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLP------SSLTSKHY-GES-----EKLVRA 139
           ILL GP G+GKTLLA+ +A        NV P      ++LT   Y GE       KL++A
Sbjct: 100 ILLIGPTGSGKTLLAQTLAK-----ILNV-PFAIADATTLTEAGYVGEDVENILLKLLQA 153

Query: 140 L-FETARARAPAVIFIDEVD 158
             ++  RA    +I+IDE+D
Sbjct: 154 ADYDVERAER-GIIYIDEID 172

Length = 408

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 90  RGILLFGPPGTGKTLLAKAVASQHGS-TFFNVLPSS-LTSKHYGESEKLVRAL 140
           RGIL+ GPPGTGKT LA  +A + G    F  +  S + S    ++E L +AL
Sbjct: 66  RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118

Length = 450

>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 34/117 (29%)

Query: 60  GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN 119
           GL+ VK+   E L + KL  +L   IL       L GPPG GKT L K++A   G  F  
Sbjct: 327 GLEKVKERILEYLAVQKLTKKLKGPIL------CLVGPPGVGKTSLGKSIAKALGRKFVR 380

Query: 120 VLPSSLTSKHYG----ESE--------------KLVRALFETARARAPAVIFIDEVD 158
           +   SL     G    E+E              K+++ + + A  + P V  +DE+D
Sbjct: 381 I---SL-----GGVRDEAEIRGHRRTYIGAMPGKIIQGM-KKAGVKNP-VFLLDEID 427

Length = 782

>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 12/77 (15%)

Query: 93  LLFGPPGTGKT----LLAKAVASQH------GSTFFNVLPSSL--TSKHYGESEKLVRAL 140
           +L G PG GKT     LA+ + +            +++   SL   +K+ GE E+ ++A+
Sbjct: 195 VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAV 254

Query: 141 FETARARAPAVIFIDEV 157
            +        ++FIDE+
Sbjct: 255 LKEVEKSKNVILFIDEI 271

Length = 786

>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 22/91 (24%)

Query: 83  KGILRPWRGI--------LLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESE 134
             +LR  R I        +L+GPPG GKT LA+ +A+   + F     SSL +   G  +
Sbjct: 40  GRLLR--RAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF-----SSLNAVLAGVKD 92

Query: 135 KLVRALFETARARAP-----AVIFIDEVDAF 160
             +RA  + A+ R        ++FIDEV  F
Sbjct: 93  --LRAEVDRAKERLERHGKRTILFIDEVHRF 121

Length = 725

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTF 117
           +LL+GPPG GKT LA  +A++ G   
Sbjct: 54  VLLYGPPGLGKTTLANIIANEMGVNI 79

Length = 328

>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 20/80 (25%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLP------SSLT-SKHYGES-E----KLV-R 138
           ILL GP G+GKTLLA+ +A        +V P      ++LT + + GE  E    KL+  
Sbjct: 111 ILLIGPTGSGKTLLAQTLAR-----ILDV-PFAIADATTLTEAGYVGEDVENILLKLLQA 164

Query: 139 ALFETARARAPAVIFIDEVD 158
           A ++  +A+   +++IDE+D
Sbjct: 165 ADYDVEKAQR-GIVYIDEID 183

Length = 412

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTF 117
           +LLFGPPG GKT LA  +A++ G   
Sbjct: 55  VLLFGPPGLGKTTLAHIIANELGVNL 80

Length = 332

>gnl|CDD|116340 pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 6/41 (14%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTF----F--NVLPSSLT 126
           +LL G PG  KTLLA+ +A   G  F    F  ++LPS +T
Sbjct: 2   VLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDIT 42

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 131

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 15/127 (11%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
           IL+ GPPG+GK+ LAK +A + G    +            E         E         
Sbjct: 2   ILITGPPGSGKSTLAKKLAEKLGIPVIS------LDDLLREEGLAELDDGELDDIDIDLE 55

Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR 211
           +  + +D         +  R    EL            +  ++V      P      LKR
Sbjct: 56  LLEEILDELAKQEWVIDGVRESTLELR---------LEEADLVVFLDLPLPACRFRLLKR 106

Query: 212 RFEKRIS 218
           R ++   
Sbjct: 107 RLQRGRG 113

Length = 114

>gnl|CDD|216270 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 79  PQLFKGILRPW-------RG-ILLFGPPGTGKTLLAKAVASQHGSTFFNVL 121
           P     +L  W       R  +  +GP  TGKT LA+A+A  H    +  +
Sbjct: 95  PAEVGQVLLAWLSKQGGKRNTVWFYGPASTGKTNLAQAIA--HAVPLYGCV 143

This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity. Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
KOG0738|consensus	491		100.0
KOG0739|consensus	439		100.0
KOG0730|consensus	693		100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0733|consensus	802		100.0
KOG0736|consensus	953		100.0
KOG0733|consensus	802		100.0
KOG0737|consensus	386		100.0
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
KOG0740|consensus	428		100.0
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	100.0
KOG0734|consensus	752		100.0
KOG0728|consensus	404		100.0
KOG0727|consensus	408		100.0
KOG0652|consensus	424		100.0
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	100.0
KOG0726|consensus	440		100.0
CHL00195	489	ycf46 Ycf46; Provisional	100.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
KOG0735|consensus	952		100.0
KOG0729|consensus	435		100.0
PRK03992	389	proteasome-activating nucleotidase; Provisional	100.0
KOG0731|consensus	774		100.0
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	100.0
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	100.0
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	100.0
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	100.0
KOG0741|consensus	744		100.0
KOG0651|consensus	388		100.0
CHL00176	638	ftsH cell division protein; Validated	100.0
KOG0730|consensus	693		100.0
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.98
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.97
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.97
CHL00206	2281	ycf2 Ycf2; Provisional	99.97
KOG0732|consensus	1080		99.96
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.96
KOG0736|consensus	953		99.89
KOG0735|consensus	952		99.89
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.87
CHL00181	287	cbbX CbbX; Provisional	99.86
PF00004	132	AAA: ATPase family associated with various cellula	99.86
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.85
KOG0742|consensus	630		99.83
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.83
KOG0744|consensus	423		99.81
KOG0743|consensus	457		99.8
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.79
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.78
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.78
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.78
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.78
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.78
KOG2004|consensus	906		99.76
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.75
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.75
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.75
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.75
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.74
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.74
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.74
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.73
KOG0989|consensus	346		99.73
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.72
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.72
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.71
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.71
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.71
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.7
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.7
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.69
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.68
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.67
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.67
PRK13342	413	recombination factor protein RarA; Reviewed	99.67
PLN03025	319	replication factor C subunit; Provisional	99.67
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.67
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.67
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.67
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.66
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.66
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.66
PRK04195	482	replication factor C large subunit; Provisional	99.65
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.65
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.65
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.65
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.65
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.64
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.64
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.64
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.64
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.63
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.62
PRK10865	857	protein disaggregation chaperone; Provisional	99.62
PHA02544	316	44 clamp loader, small subunit; Provisional	99.62
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.62
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.62
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.61
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.61
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.6
CHL00095	821	clpC Clp protease ATP binding subunit	99.6
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.6
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.6
PRK12402	337	replication factor C small subunit 2; Reviewed	99.6
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.59
KOG2028|consensus	554		99.59
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.58
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.58
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.58
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.58
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.58
PRK13341	725	recombination factor protein RarA/unknown domain f	99.57
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.57
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.57
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.56
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.55
PRK06893	229	DNA replication initiation factor; Validated	99.54
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.54
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.54
PRK12422	445	chromosomal replication initiation protein; Provis	99.54
PRK08084	235	DNA replication initiation factor; Provisional	99.52
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.52
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.51
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.51
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.5
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.5
PRK08727	233	hypothetical protein; Validated	99.49
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.49
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.49
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.49
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.47
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.47
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.45
PRK05642	234	DNA replication initiation factor; Validated	99.44
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.44
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.43
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.43
PRK06620	214	hypothetical protein; Validated	99.43
KOG0991|consensus	333		99.41
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.4
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.4
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.39
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.38
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.33
PRK09087	226	hypothetical protein; Validated	99.32
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.32
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.32
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.31
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.28
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.27
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.26
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.26
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.26
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.26
PHA02244	383	ATPase-like protein	99.26
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.25
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.25
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.24
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.24
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.24
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.22
PRK10865	857	protein disaggregation chaperone; Provisional	99.21
CHL00095	821	clpC Clp protease ATP binding subunit	99.21
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.2
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.2
KOG1969|consensus	877		99.2
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.19
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.19
smart00382	148	AAA ATPases associated with a variety of cellular	99.18
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.18
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.17
KOG0990|consensus	360		99.15
COG0714	329	MoxR-like ATPases [General function prediction onl	99.15
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.15
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.15
PF07726	131	AAA_3: ATPase family associated with various cellu	99.15
KOG0741|consensus	744		99.14
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.14
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.13
PRK04132	846	replication factor C small subunit; Provisional	99.12
smart00350	509	MCM minichromosome maintenance proteins.	99.11
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	99.09
PRK12377	248	putative replication protein; Provisional	99.09
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.09
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.09
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.04
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.04
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.03
PRK07952	244	DNA replication protein DnaC; Validated	99.02
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.01
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.99
KOG1514|consensus	767		98.99
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.99
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.98
PRK13531	498	regulatory ATPase RavA; Provisional	98.97
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.97
COG2204	464	AtoC Response regulator containing CheY-like recei	98.96
KOG0745|consensus	564		98.95
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	98.93
COG1221	403	PspF Transcriptional regulators containing an AAA-	98.93
PRK13765	637	ATP-dependent protease Lon; Provisional	98.91
PRK11608	326	pspF phage shock protein operon transcriptional ac	98.91
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	98.9
PRK06835	329	DNA replication protein DnaC; Validated	98.88
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	98.88
PRK08116	268	hypothetical protein; Validated	98.87
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.84
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	98.83
PRK15424	538	propionate catabolism operon regulatory protein Pr	98.83
PRK06921	266	hypothetical protein; Provisional	98.82
PRK08181	269	transposase; Validated	98.82
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	98.82
KOG2227|consensus	529		98.81
KOG2035|consensus	351		98.81
PF09336	62	Vps4_C: Vps4 C terminal oligomerisation domain; In	98.8
PRK06526	254	transposase; Provisional	98.8
PRK05022	509	anaerobic nitric oxide reductase transcription reg	98.8
PRK09862	506	putative ATP-dependent protease; Provisional	98.79
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	98.77
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.75
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.74
PRK05917	290	DNA polymerase III subunit delta'; Validated	98.74
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.74
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	98.73
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.72
PRK09183	259	transposase/IS protein; Provisional	98.72
KOG1051|consensus	898		98.71
PF13173	128	AAA_14: AAA domain	98.69
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.68
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.68
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.67
PRK08939	306	primosomal protein DnaI; Reviewed	98.66
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.65
PRK07276	290	DNA polymerase III subunit delta'; Validated	98.64
KOG0478|consensus	804		98.63
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	98.62
KOG1970|consensus	634		98.58
KOG0482|consensus	721		98.56
COG1241	682	MCM2 Predicted ATPase involved in replication cont	98.51
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.5
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.47
PRK07132	299	DNA polymerase III subunit delta'; Validated	98.46
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	98.46
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.45
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.45
KOG2228|consensus	408		98.44
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	98.42
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.4
KOG2680|consensus	454		98.4
PHA00729	226	NTP-binding motif containing protein	98.4
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.35
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.32
KOG0480|consensus	764		98.31
COG1485	367	Predicted ATPase [General function prediction only	98.3
KOG2383|consensus	467		98.3
PRK15115	444	response regulator GlrR; Provisional	98.29
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.27
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.23
KOG2170|consensus	344		98.18
KOG0477|consensus	854		98.18
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.17
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	98.17
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	98.16
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.16
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.12
PRK11823	446	DNA repair protein RadA; Provisional	98.11
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.1
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	98.09
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.09
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.08
PHA02624	647	large T antigen; Provisional	98.07
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	98.06
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.06
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	98.05
PF05729	166	NACHT: NACHT domain	98.04
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.02
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.02
KOG1968|consensus	871		97.99
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.99
PRK15455	644	PrkA family serine protein kinase; Provisional	97.99
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.99
PRK07261	171	topology modulation protein; Provisional	97.98
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.98
PRK08118	167	topology modulation protein; Reviewed	97.97
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	97.97
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.96
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.96
PRK00131	175	aroK shikimate kinase; Reviewed	97.93
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.9
PRK09354	349	recA recombinase A; Provisional	97.9
KOG0481|consensus	729		97.9
PRK10365	441	transcriptional regulatory protein ZraR; Provision	97.89
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.89
KOG1942|consensus	456		97.88
KOG0479|consensus	818		97.87
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.87
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.85
PF14516	331	AAA_35: AAA-like domain	97.85
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.84
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.83
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.83
PRK04296	190	thymidine kinase; Provisional	97.82
PRK10536	262	hypothetical protein; Provisional	97.81
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.8
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.79
PRK06067	234	flagellar accessory protein FlaH; Validated	97.77
PRK06581	263	DNA polymerase III subunit delta'; Validated	97.75
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.74
cd01128	249	rho_factor Transcription termination factor rho is	97.74
PRK13947	171	shikimate kinase; Provisional	97.72
PRK03839	180	putative kinase; Provisional	97.72
PRK00625	173	shikimate kinase; Provisional	97.72
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.71
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.7
PRK14974	336	cell division protein FtsY; Provisional	97.7
PRK09376	416	rho transcription termination factor Rho; Provisio	97.7
PRK13764	602	ATPase; Provisional	97.7
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.68
PRK06762	166	hypothetical protein; Provisional	97.68
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.68
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.67
COG4650	531	RtcR Sigma54-dependent transcription regulator con	97.67
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.67
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.67
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.66
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.66
KOG3347|consensus	176		97.65
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.65
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.65
PRK04328	249	hypothetical protein; Provisional	97.65
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.64
PRK05973	237	replicative DNA helicase; Provisional	97.64
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.64
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.63
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.63
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.63
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.62
PRK13695	174	putative NTPase; Provisional	97.62
KOG1051|consensus	898		97.62
PRK13949	169	shikimate kinase; Provisional	97.61
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.61
PRK14532	188	adenylate kinase; Provisional	97.6
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.6
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.59
PRK13948	182	shikimate kinase; Provisional	97.59
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.58
PRK06217	183	hypothetical protein; Validated	97.58
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.58
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.57
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.57
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.56
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	97.55
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.54
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.54
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.53
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.51
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.51
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.51
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.5
PRK14531	183	adenylate kinase; Provisional	97.5
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.5
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.49
PRK14530	215	adenylate kinase; Provisional	97.49
PRK04841	903	transcriptional regulator MalT; Provisional	97.49
PRK05057	172	aroK shikimate kinase I; Reviewed	97.49
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.49
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.48
PRK06547	172	hypothetical protein; Provisional	97.48
PTZ00088	229	adenylate kinase 1; Provisional	97.47
TIGR02533	486	type_II_gspE general secretory pathway protein E.	97.47
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.46
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.46
KOG2543|consensus	438		97.46
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.46
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.46
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.46
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.45
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.44
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.44
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.43
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.43
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.43
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.42
PRK13946	184	shikimate kinase; Provisional	97.42
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.42
PRK03731	171	aroL shikimate kinase II; Reviewed	97.42
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.42
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.42
TIGR00767	415	rho transcription termination factor Rho. Members	97.41
PRK10436	462	hypothetical protein; Provisional	97.41
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.4
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.4
PHA02774	613	E1; Provisional	97.4
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.4
PF13245	76	AAA_19: Part of AAA domain	97.39
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.37
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.36
PLN02200	234	adenylate kinase family protein	97.36
KOG0058|consensus	716		97.36
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.35
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	97.35
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.34
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.34
PRK14528	186	adenylate kinase; Provisional	97.34
PTZ00035	337	Rad51 protein; Provisional	97.34
PRK09302	509	circadian clock protein KaiC; Reviewed	97.34
PRK06696	223	uridine kinase; Validated	97.34
PRK10416	318	signal recognition particle-docking protein FtsY;	97.34
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	97.33
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	97.32
PRK02496	184	adk adenylate kinase; Provisional	97.31
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.31
PRK13851	344	type IV secretion system protein VirB11; Provision	97.31
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.31
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.3
PRK04040	188	adenylate kinase; Provisional	97.3
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.3
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.29
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.28
PRK00279	215	adk adenylate kinase; Reviewed	97.28
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.27
PRK14527	191	adenylate kinase; Provisional	97.27
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.26
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	97.25
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	97.23
PRK12608	380	transcription termination factor Rho; Provisional	97.23
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.23
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.22
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.22
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.21
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.21
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.2
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	97.2
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.2
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.2
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.2
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.19
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.18
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.18
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.18
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.17
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.17
PF13479	213	AAA_24: AAA domain	97.17
PLN02674	244	adenylate kinase	97.16
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	97.16
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.15
PRK10867	433	signal recognition particle protein; Provisional	97.14
PRK04182	180	cytidylate kinase; Provisional	97.14
COG4178	604	ABC-type uncharacterized transport system, permeas	97.13
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	97.13
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	97.13
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.12
PRK01184	184	hypothetical protein; Provisional	97.12
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.11
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.11
PRK13889	988	conjugal transfer relaxase TraA; Provisional	97.1
cd03246	173	ABCC_Protease_Secretion This family represents the	97.1
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	97.1
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.09
PTZ00202	550	tuzin; Provisional	97.09
PRK05541	176	adenylylsulfate kinase; Provisional	97.09
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.08
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.07
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.07
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.06
PRK08233	182	hypothetical protein; Provisional	97.06
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.05
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.05
PRK09302	509	circadian clock protein KaiC; Reviewed	97.05
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.05
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.04
PRK14526	211	adenylate kinase; Provisional	97.03
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.02
PHA02530	300	pseT polynucleotide kinase; Provisional	97.01
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.0
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	97.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.99
PLN02199	303	shikimate kinase	96.99
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.98
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.97
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	96.97
PRK10875	615	recD exonuclease V subunit alpha; Provisional	96.96
PRK00889	175	adenylylsulfate kinase; Provisional	96.96
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.96
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	96.96
PRK05480	209	uridine/cytidine kinase; Provisional	96.94
PRK12338	319	hypothetical protein; Provisional	96.94
COG1855	604	ATPase (PilT family) [General function prediction	96.94
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.93
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.91
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.91
PRK14529	223	adenylate kinase; Provisional	96.91
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.9
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	96.9
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.89
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.89
TIGR00959	428	ffh signal recognition particle protein. This mode	96.89
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.85
PLN02459	261	probable adenylate kinase	96.85

>KOG0738|consensus

Probab=100.00  E-value=8e-55  Score=389.76  Aligned_cols=294  Identities=49%  Similarity=0.811  Sum_probs=264.8

Q ss_pred             CCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHH
Q psy7809          30 PNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV  109 (343)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~i  109 (343)
                      ....++..+.+.++++++...|.+.|+||.|++++|+.|++.+..|+..|++|.++..|+++||++||||||||+||+++
T Consensus       186 ~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAv  265 (491)
T KOG0738|consen  186 DSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAV  265 (491)
T ss_pred             CcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHH
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC---CCchhhhHHHHHHHhhhcccCCC
Q psy7809         110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG---SREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       110 a~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~---~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                      |.+++..|+.|+.+.+.++|-|++++.++-+|..|+.++|++|||||||.|+..   ..+++.++++.++|+.+||+...
T Consensus       266 ATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~  345 (491)
T KOG0738|consen  266 ATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG  345 (491)
T ss_pred             HHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999999999999999973   55788999999999999999876


Q ss_pred             CCCC-CCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHH
Q psy7809         187 GSGD-KGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLC  257 (343)
Q Consensus       187 ~~~~-~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~  257 (343)
                      .... ..|+|+++||-||+||++++|||+++|+        |..++++.++......+++++.||+.++||||.||.++|
T Consensus       346 t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC  425 (491)
T KOG0738|consen  346 TLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC  425 (491)
T ss_pred             ccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence            5433 3588899999999999999999999998        999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy7809         258 QEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWN  337 (343)
Q Consensus       258 ~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~  337 (343)
                      +.|.+.++||.....        ++++.-+    ...+... .|       ++.+||+.|+++++|+++..++.+|++|.
T Consensus       426 reAsm~~mRR~i~g~--------~~~ei~~----lakE~~~-~p-------v~~~Dfe~Al~~v~pSvs~~d~~k~ekW~  485 (491)
T KOG0738|consen  426 REASMMAMRRKIAGL--------TPREIRQ----LAKEEPK-MP-------VTNEDFEEALRKVRPSVSAADLEKYEKWM  485 (491)
T ss_pred             HHHHHHHHHHHHhcC--------CcHHhhh----hhhhccc-cc-------cchhhHHHHHHHcCcCCCHHHHHHHHHHH
Confidence            999999999887611        1111100    0111111 24       99999999999999999999999999999


Q ss_pred             HHhCCC
Q psy7809         338 ELYGSR  343 (343)
Q Consensus       338 ~~~~~~  343 (343)
                      +.||||
T Consensus       486 ~efGS~  491 (491)
T KOG0738|consen  486 DEFGSC  491 (491)
T ss_pred             HHhcCC
Confidence            999996

>KOG0739|consensus

Probab=100.00  E-value=7.2e-52  Score=359.35  Aligned_cols=300  Identities=41%  Similarity=0.704  Sum_probs=272.0

Q ss_pred             ChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          35 NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ...++..+...++...|.+.|+|+.|++..|++|++.+++|...|++|.+...|++++|||||||||||+||+++|.+.+
T Consensus       112 ~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn  191 (439)
T KOG0739|consen  112 KKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN  191 (439)
T ss_pred             HHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence            45578888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       115 ~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      ..|+.|+.+++++++.|++++.+..+|..|+.+.|+||||||||.+|+.  .++++.++++...|+.+|++....  ..+
T Consensus       192 STFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d--~~g  269 (439)
T KOG0739|consen  192 STFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND--NDG  269 (439)
T ss_pred             CceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC--CCc
Confidence            9999999999999999999999999999999999999999999999984  556788999999999999998765  468


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCC-CCCCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEI-RKDPNVDVATLSKQLIGYSGSDIRDLCQEIILI  263 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~-~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~  263 (343)
                      ++|+++||-||.||.+++|||+++|+        |..+++.++... +...+.|+.+|+++|+||||+||.-+++.|++.
T Consensus       270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme  349 (439)
T KOG0739|consen  270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME  349 (439)
T ss_pred             eEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence            99999999999999999999999998        999999999887 556889999999999999999999999999999


Q ss_pred             HHHHHHHhccccCCCCCC----------------CCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCH
Q psy7809         264 AAREVIQNAGFTGVNSKP----------------PDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDG  327 (343)
Q Consensus       264 a~~r~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~  327 (343)
                      .+|+...++||..+...+                ++..+-.|+.+.++.+-.++       ||+.||.+++...+|++..
T Consensus       350 PvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~-------vt~~D~~k~l~~tkPTvn~  422 (439)
T KOG0739|consen  350 PVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPP-------VTMRDFLKSLSRTKPTVNE  422 (439)
T ss_pred             hHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCC-------ccHHHHHHHHhhcCCCCCH
Confidence            999999999986654422                22233344455555555555       9999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC
Q psy7809         328 ALIRKYKRWNELYGSR  343 (343)
Q Consensus       328 ~~~~~~~~~~~~~~~~  343 (343)
                      +++.+.++|.+.||.+
T Consensus       423 ~Dl~k~~~Ft~dFGqE  438 (439)
T KOG0739|consen  423 DDLLKHEKFTEDFGQE  438 (439)
T ss_pred             HHHHHHHHHHHhhccC
Confidence            9999999999999963

>KOG0730|consensus

Probab=100.00  E-value=8.8e-50  Score=378.90  Aligned_cols=260  Identities=38%  Similarity=0.645  Sum_probs=243.5

Q ss_pred             hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..|.++.+.|+++|+||+|++++|+.|++.+.+|..++..|..+ +.+|+|||||||||||||++||++|++.+++|+.+
T Consensus       420 a~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv  499 (693)
T KOG0730|consen  420 ALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV  499 (693)
T ss_pred             hhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence            34667788999999999999999999999999999999999976 69999999999999999999999999999999999


Q ss_pred             cCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         121 LPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      .++++.++|+|++++.++.+|+.|+..+||||||||||.++...  ..++...+++++|+..|+++....   +|+||++
T Consensus       500 kgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k---~V~ViAA  576 (693)
T KOG0730|consen  500 KGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK---NVLVIAA  576 (693)
T ss_pred             cCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC---cEEEEec
Confidence            99999999999999999999999999999999999999999843  334668999999999999997754   8999999


Q ss_pred             cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      ||+|+.||++++|  ||++.|+        |.+||+.+++++.+..++|+..||+.|+||||+||..+|++|...|+++.
T Consensus       577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~  656 (693)
T KOG0730|consen  577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRES  656 (693)
T ss_pred             cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence            9999999999999  9999998        99999999999999999999999999999999999999999999999987


Q ss_pred             HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy7809         269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNEL  339 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~  339 (343)
                      ...                                   ..|+.+||++|++..+++++.++++.|+.|.+.
T Consensus       657 i~a-----------------------------------~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~  692 (693)
T KOG0730|consen  657 IEA-----------------------------------TEITWQHFEEALKAVRPSLTSELLEKYEDFAAR  692 (693)
T ss_pred             ccc-----------------------------------ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence            651                                   129999999999999999999999999999864

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.4e-49  Score=348.66  Aligned_cols=238  Identities=41%  Similarity=0.638  Sum_probs=218.4

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      -+.+.|.++|+||+|++++++.|++.+..|+.+|++|... +.||+|||||||||||||.||||+|++.++.|+.+..++
T Consensus       141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE  220 (406)
T COG1222         141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE  220 (406)
T ss_pred             eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence            3678899999999999999999999999999999999975 899999999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      |..+|.|+....++++|..|+.++||||||||||++.....     ....-.+.+-+|+.+||++...   .+|-||++|
T Consensus       221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~---~nvKVI~AT  297 (406)
T COG1222         221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR---GNVKVIMAT  297 (406)
T ss_pred             HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC---CCeEEEEec
Confidence            99999999999999999999999999999999999987422     2223356666777788888664   489999999


Q ss_pred             CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      |+++.|||+|+|  ||++.|.        |.+||+++.+.+.+..++||+.||+.++|+||+||+++|.+|.+.|+|+..
T Consensus       298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R  377 (406)
T COG1222         298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR  377 (406)
T ss_pred             CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc
Confidence            999999999999  9999998        999999999999999999999999999999999999999999999999865


Q ss_pred             HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809         270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK  323 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p  323 (343)
                      .                                     .||++||.+|++++..
T Consensus       378 ~-------------------------------------~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         378 D-------------------------------------EVTMEDFLKAVEKVVK  394 (406)
T ss_pred             C-------------------------------------eecHHHHHHHHHHHHh
Confidence            3                                     3999999999999854

>KOG0733|consensus

Probab=100.00  E-value=2.9e-48  Score=364.08  Aligned_cols=276  Identities=36%  Similarity=0.570  Sum_probs=247.5

Q ss_pred             hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..|+.+...|.++|+||+|+++++.+|...+.+|..+|.++..+ +..|.|||||||||||||.||+++|++.+.+|+.|
T Consensus       497 akREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV  576 (802)
T KOG0733|consen  497 AKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV  576 (802)
T ss_pred             hhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence            34777889999999999999999999999999999999999975 78899999999999999999999999999999999


Q ss_pred             cCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         121 LPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ..++|.++|+|+++..++.+|..|+.++|||||+||+|.|++.  ........+++++|+..|+++....   +|.||++
T Consensus       577 KGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~---gV~viaA  653 (802)
T KOG0733|consen  577 KGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR---GVYVIAA  653 (802)
T ss_pred             cCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc---ceEEEee
Confidence            9999999999999999999999999999999999999999984  3345677899999999999997755   8999999


Q ss_pred             cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhc--CCCCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHH
Q psy7809         199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLG--EIRKDPNVDVATLSKQLI--GYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~--~~~~~~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a  264 (343)
                      ||+|+.+||+++|  ||++.++        |.+||+.+.+  +..+.+++|++.||..+.  ||||+||..||++|...|
T Consensus       654 TNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~A  733 (802)
T KOG0733|consen  654 TNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILA  733 (802)
T ss_pred             cCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHH
Confidence            9999999999999  9999987        9999999999  668889999999999887  999999999999999999


Q ss_pred             HHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809         265 AREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG  341 (343)
Q Consensus       265 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~  341 (343)
                      +++.+......                  -.++.++   ...+.+|+.||++|+++++|++++.+.+.|++.++++|
T Consensus       734 L~~~~~~~~~~------------------~~~~~~~---~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~  789 (802)
T KOG0733|consen  734 LRESLFEIDSS------------------EDDVTVR---SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS  789 (802)
T ss_pred             HHHHHhhcccc------------------Cccccee---eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence            99887511100                  0011111   11456999999999999999999999999999999987

>KOG0736|consensus

Probab=100.00  E-value=1.4e-47  Score=367.38  Aligned_cols=274  Identities=34%  Similarity=0.546  Sum_probs=248.0

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      -.+.|.+.|+||+|++++|..|.+.+..|+.+++++..++++-.|||||||||||||.+|+|+|.++...|+.|..+++.
T Consensus       663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL  742 (953)
T KOG0736|consen  663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL  742 (953)
T ss_pred             CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence            45789999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      +.|+|+++++++++|++|+..+|||||+||+|.++++++    .++.-.++..+|+.+||+++... ...|.|||+||+|
T Consensus       743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~-s~~VFViGATNRP  821 (953)
T KOG0736|consen  743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS-SQDVFVIGATNRP  821 (953)
T ss_pred             HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC-CCceEEEecCCCc
Confidence            999999999999999999999999999999999998532    34566899999999999998753 5689999999999


Q ss_pred             CCCCHHHhc--cccCcch---------HHHHHhhhhcCCCCCCcccHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         203 WDLDEALKR--RFEKRIS---------PIQIIGLCLGEIRKDPNVDVATLSKQL-IGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       203 ~~l~~~l~~--rf~~~i~---------r~~il~~~~~~~~~~~~~~~~~la~~t-~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      +.|||+++|  ||++.++         +..+|+...+++.++.++|+.++|+.+ ..|||+|+..+|.+|+..|++|...
T Consensus       822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~  901 (953)
T KOG0736|consen  822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH  901 (953)
T ss_pred             cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999  9999998         899999999999999999999999999 5799999999999999999999876


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG  341 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~  341 (343)
                      ......                    ++....+...+.|+++||.+|+++++|+++..++..|+..+..|.
T Consensus       902 ~ie~g~--------------------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs  952 (953)
T KOG0736|consen  902 DIESGT--------------------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS  952 (953)
T ss_pred             Hhhhcc--------------------ccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence            221110                    011123445778999999999999999999999999999999985

>KOG0733|consensus

Probab=100.00  E-value=7.5e-45  Score=341.17  Aligned_cols=290  Identities=31%  Similarity=0.503  Sum_probs=242.1

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      ...++|++|+|++.....|.+.+.. ..+|+.+... +.|++||||+||||||||+||+++|.+++.+|+.++..++++.
T Consensus       184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG  262 (802)
T KOG0733|consen  184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG  262 (802)
T ss_pred             CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence            3467899999999999999999988 7888887764 8999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCC-CCCEEEEEecCCCCCC
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSG-DKGVLVLAATNHPWDL  205 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~-~~~v~vI~ttn~~~~l  205 (343)
                      +.|++++.++++|+.|..++|||+||||||.+.++.  .+.+..+++..+|+..|+++..... ..+|+|||+||+|+.|
T Consensus       263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl  342 (802)
T KOG0733|consen  263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL  342 (802)
T ss_pred             cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence            999999999999999999999999999999999853  3456789999999999999876542 4589999999999999


Q ss_pred             CHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccc-
Q psy7809         206 DEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGF-  274 (343)
Q Consensus       206 ~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~-  274 (343)
                      |++|+|  ||++.|.        |.+||+..++...+..++|+..||+.|.||.|+||..||..|...|++|+++...- 
T Consensus       343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p  422 (802)
T KOG0733|consen  343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP  422 (802)
T ss_pred             CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence            999999  9999998        99999999999999999999999999999999999999999999999998863321 


Q ss_pred             -cCCC--CCC--CCC-CCCCCCC--------CCCC----------ccccCCCCCCcccccHHHHHHHHHhcCCC------
Q psy7809         275 -TGVN--SKP--PDG-RNNIGAK--------GDDS----------KCQVAPLGSDRIVLNRSHFERAKEKCRKS------  324 (343)
Q Consensus       275 -~~~~--~~~--~~~-~~~~~~~--------~~~~----------~~~~~~~~~~~~~lt~~df~~Al~~~~p~------  324 (343)
                       ....  +..  .+. ...++..        .+.+          .-+++......+.|+.+||.+|+..++|+      
T Consensus       423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF  502 (802)
T KOG0733|consen  423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF  502 (802)
T ss_pred             cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence             1110  000  000 1111111        0000          00111234457789999999999999854      


Q ss_pred             -----CCHHHHHHHHHHHHHh
Q psy7809         325 -----VDGALIRKYKRWNELY  340 (343)
Q Consensus       325 -----~~~~~~~~~~~~~~~~  340 (343)
                           ++|+++-.+++++.++
T Consensus       503 ~tVPdVtW~dIGaL~~vR~eL  523 (802)
T KOG0733|consen  503 ATVPDVTWDDIGALEEVRLEL  523 (802)
T ss_pred             eecCCCChhhcccHHHHHHHH
Confidence                 8999999999988764

>KOG0737|consensus

Probab=100.00  E-value=5.2e-43  Score=313.60  Aligned_cols=286  Identities=41%  Similarity=0.720  Sum_probs=243.6

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +.+....-.++|+||+|++.+++++.+.+..|+.+|++|..  +..++.|||||||||||||++|+++|++.+..|+.|.
T Consensus        80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~  159 (386)
T KOG0737|consen   80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS  159 (386)
T ss_pred             cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence            33444555689999999999999999999999999999953  3789999999999999999999999999999999999


Q ss_pred             CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      .+.+.++++|+.++.++.+|..|...+|+||||||+|.++..  ..+++....+.++|+...+++.+.. ..+|+|+|+|
T Consensus       160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~-~~rVlVlgAT  238 (386)
T KOG0737|consen  160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKD-SERVLVLGAT  238 (386)
T ss_pred             ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCC-CceEEEEeCC
Confidence            999999999999999999999999999999999999999873  5567888899999999999998876 5579999999


Q ss_pred             CCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809         200 NHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN  271 (343)
Q Consensus       200 n~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~  271 (343)
                      |+|.+||++++||++++++        |..|++..++...+.+++|+..+|++|+||||+||.++|..|.+..+++.+..
T Consensus       239 NRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~  318 (386)
T KOG0737|consen  239 NRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS  318 (386)
T ss_pred             CCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence            9999999999999999998        99999999999999999999999999999999999999999999999999875


Q ss_pred             c-cccCCCCCCCCCCCCCCCCCC--CCccccCCCCCCcccccHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCC
Q psy7809         272 A-GFTGVNSKPPDGRNNIGAKGD--DSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGA--LIRKYKRWNELYGS  342 (343)
Q Consensus       272 ~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~--~~~~~~~~~~~~~~  342 (343)
                      . +...++....+    . .+.+  ...+..+|       ++++||.+|...+-++++.+  .....+.|++.||.
T Consensus       319 ~~~~~d~d~~~~d----~-~~~~~~~~~~~~r~-------l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e  382 (386)
T KOG0737|consen  319 ETGLLDLDKAIAD----L-KPTQAAASSCLLRP-------LEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE  382 (386)
T ss_pred             cccchhhhhhhhh----c-cCCcccccccccCc-------ccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence            3 11111000000    0 0001  12333556       99999999999777664333  56788999999874

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=100.00  E-value=4.6e-40  Score=334.75  Aligned_cols=276  Identities=37%  Similarity=0.599  Sum_probs=238.9

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      ..+...|..+|++++|++.+++.|.+.+.+++.+++++... ..++.++|||||||||||++|+++|++++.+|+.++++
T Consensus       442 ~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~  521 (733)
T TIGR01243       442 EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP  521 (733)
T ss_pred             hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence            34455678899999999999999999999999999988764 68889999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC---chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ++.++|+|+++..++.+|..|+...|+||||||+|.+++...   ......++.++|+..|+++...   .+++||+|||
T Consensus       522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~---~~v~vI~aTn  598 (733)
T TIGR01243       522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL---SNVVVIAATN  598 (733)
T ss_pred             HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC---CCEEEEEeCC
Confidence            999999999999999999999999999999999999987432   2345678999999999987553   3899999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      +|+.||++++|  ||+..++        |.+||+.+.....+..+++++.||+.|+||||+||..+|++|...|+++...
T Consensus       599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~  678 (733)
T TIGR01243       599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG  678 (733)
T ss_pred             ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999998  9999887        9999999999888888999999999999999999999999999999998765


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS  342 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~~  342 (343)
                      .........            ..       ........|+.+||.+|+++++|+++.++++.|++|.+.||.
T Consensus       679 ~~~~~~~~~------------~~-------~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~  731 (733)
T TIGR01243       679 SPAKEKLEV------------GE-------EEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR  731 (733)
T ss_pred             hccchhhhc------------cc-------ccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence            211000000            00       000112359999999999999999999999999999999984

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0740|consensus

Probab=100.00  E-value=1.6e-40  Score=307.65  Aligned_cols=287  Identities=45%  Similarity=0.735  Sum_probs=255.9

Q ss_pred             CCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHH
Q psy7809          32 RRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ..++....+.+.+++....+.+.|+|+.|++.+++.+.+.+++|..++.+|.++-.+++++||.||||+|||+|++++|.
T Consensus       129 ~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAs  208 (428)
T KOG0740|consen  129 KEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIAT  208 (428)
T ss_pred             ccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHh
Confidence            34455677788888999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             HhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809         112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSG  189 (343)
Q Consensus       112 ~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~  189 (343)
                      +.+..|+.++++.+.++|+|+.++.++.+|..|+..+|+|+||||+|.++..  ..+++...++..+++-.+++..... 
T Consensus       209 E~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~-  287 (428)
T KOG0740|consen  209 ESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP-  287 (428)
T ss_pred             hhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC-
Confidence            9999999999999999999999999999999999999999999999999974  5566778899999999998877765 


Q ss_pred             CCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCC-CCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         190 DKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEI-RKDPNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       190 ~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~-~~~~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      ..+|+|||+||.||.+|.+++|||.++++        |..+|..++... ....+.+++.||+.|+||+++||.++|..|
T Consensus       288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea  367 (428)
T KOG0740|consen  288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEA  367 (428)
T ss_pred             CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence            56999999999999999999999999998        999999999887 556778999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q psy7809         261 ILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELY  340 (343)
Q Consensus       261 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~  340 (343)
                      .+...+.......   +...              .....++       ++..||..|++..+|+++...++.|.+|+..|
T Consensus       368 ~~~p~r~~~~~~~---~~~~--------------~~~~~r~-------i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~f  423 (428)
T KOG0740|consen  368 AMGPLRELGGTTD---LEFI--------------DADKIRP-------ITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEF  423 (428)
T ss_pred             hcCchhhcccchh---hhhc--------------chhccCC-------CCcchHHHHHHhhccccCccccchhHHHhhhh
Confidence            9998877654100   0000              1113455       99999999999999999999999999999999


Q ss_pred             CCC
Q psy7809         341 GSR  343 (343)
Q Consensus       341 ~~~  343 (343)
                      |+.
T Consensus       424 g~~  426 (428)
T KOG0740|consen  424 GSS  426 (428)
T ss_pred             ccc
Confidence            973

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=100.00  E-value=2.1e-39  Score=276.98  Aligned_cols=234  Identities=30%  Similarity=0.485  Sum_probs=205.9

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH  129 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~  129 (343)
                      .+.++|+|++|+++.|+..+-.+ ..+..|+.|..|  .|++||||||||||||++|+++|++...+++.+...++.+.+
T Consensus       115 ~~~it~ddViGqEeAK~kcrli~-~yLenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh  191 (368)
T COG1223         115 ISDITLDDVIGQEEAKRKCRLIM-EYLENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH  191 (368)
T ss_pred             hccccHhhhhchHHHHHHHHHHH-HHhhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence            34588999999999999876544 345677888877  578999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc---hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809         130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE---HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD  206 (343)
Q Consensus       130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~  206 (343)
                      +|+....++.+|..|...+|||+||||+|.++-...-   .+....+.|+|+..|+++..+.   +|+.|++||+|+.||
T Consensus       192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene---GVvtIaaTN~p~~LD  268 (368)
T COG1223         192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE---GVVTIAATNRPELLD  268 (368)
T ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC---ceEEEeecCChhhcC
Confidence            9999999999999999999999999999999753221   1234689999999999998654   999999999999999


Q ss_pred             HHHhccccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH-HHHHHHHHHHHHHHHhccccCC
Q psy7809         207 EALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD-LCQEIILIAAREVIQNAGFTGV  277 (343)
Q Consensus       207 ~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~-l~~~A~~~a~~r~~~~~~~~~~  277 (343)
                      +++++||...|.        |..|++.+.+.+.+.-+.++..++..|.|+||+||.. ++..|++.|+.+-..       
T Consensus       269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e-------  341 (368)
T COG1223         269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE-------  341 (368)
T ss_pred             HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh-------
Confidence            999999999997        9999999999999888999999999999999999974 888889988876543       


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCC
Q psy7809         278 NSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVD  326 (343)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~  326 (343)
                                             .       |+.+|++.|+++-++...
T Consensus       342 -----------------------~-------v~~edie~al~k~r~~r~  360 (368)
T COG1223         342 -----------------------K-------VEREDIEKALKKERKRRA  360 (368)
T ss_pred             -----------------------h-------hhHHHHHHHHHhhccccC
Confidence                                   1       999999999998776644

>KOG0734|consensus

Probab=100.00  E-value=2.9e-39  Score=299.43  Aligned_cols=229  Identities=37%  Similarity=0.593  Sum_probs=208.2

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY  130 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~  130 (343)
                      .++|+|+.|.++.|+.|++++.. +..|.-|..+ .+-|+||||.||||||||+|||++|.+.+.+|++...+++-..++
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V  378 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV  378 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence            57899999999999999998864 4566666643 578899999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch--hhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809         131 GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH--EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA  208 (343)
Q Consensus       131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~  208 (343)
                      |...+.++.+|..|+.++||||||||||.+.++....  .+.++.+++|+..||++..+.   +|+||++||.|+.||++
T Consensus       379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe---GiIvigATNfpe~LD~A  455 (752)
T KOG0734|consen  379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE---GIIVIGATNFPEALDKA  455 (752)
T ss_pred             cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC---ceEEEeccCChhhhhHH
Confidence            9999999999999999999999999999999864433  367899999999999998765   99999999999999999


Q ss_pred             Hhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy7809         209 LKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVN  278 (343)
Q Consensus       209 l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~  278 (343)
                      |.|  ||+..+.        |.+||..++..+....++|...||+-|.||+|+||.++++.|...|..+...        
T Consensus       456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~--------  527 (752)
T KOG0734|consen  456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE--------  527 (752)
T ss_pred             hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc--------
Confidence            999  9999997        9999999999999999999999999999999999999999999998876543        


Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhc
Q psy7809         279 SKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC  321 (343)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~  321 (343)
                                            .       ||++||+.|-.++
T Consensus       528 ----------------------~-------VtM~~LE~akDrI  541 (752)
T KOG0734|consen  528 ----------------------M-------VTMKHLEFAKDRI  541 (752)
T ss_pred             ----------------------c-------ccHHHHhhhhhhe
Confidence                                  2       8889999988877

>KOG0728|consensus

Probab=100.00  E-value=3.1e-38  Score=268.68  Aligned_cols=251  Identities=33%  Similarity=0.550  Sum_probs=224.1

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+++.|..+++-++|++.+++.+++.+..|..+|++|..+ +..|.|+|||||||+|||.||+++|....+.|+.++.++
T Consensus       137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse  216 (404)
T KOG0728|consen  137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE  216 (404)
T ss_pred             hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence            4778889999999999999999999999999999999976 789999999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      +..+|.|+....++++|-.|+.++|+|||+||||++....     +......+.+-.|+++++++...   .++-||.+|
T Consensus       217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat---knikvimat  293 (404)
T KOG0728|consen  217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT---KNIKVIMAT  293 (404)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc---cceEEEEec
Confidence            9999999999999999999999999999999999998631     12223345566677777877654   489999999


Q ss_pred             CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      |+.+-||++++|  |+++.|.        |.+|++++.+.+.+...+++..+|+...|.||+++..+|.+|.++|+++..
T Consensus       294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr  373 (404)
T KOG0728|consen  294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR  373 (404)
T ss_pred             cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh
Confidence            999999999999  9999987        999999999999999999999999999999999999999999999998653


Q ss_pred             HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy7809         270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW  336 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~  336 (343)
                                                           +++|++||+-|..++...-++.++.--+-|
T Consensus       374 -------------------------------------vhvtqedfemav~kvm~k~~e~nms~~kl~  403 (404)
T KOG0728|consen  374 -------------------------------------VHVTQEDFEMAVAKVMQKDSEKNMSIKKLW  403 (404)
T ss_pred             -------------------------------------ccccHHHHHHHHHHHHhccccccchHHHhh
Confidence                                                 249999999999998777666666555555

>KOG0727|consensus

Probab=100.00  E-value=2.8e-38  Score=269.24  Aligned_cols=237  Identities=38%  Similarity=0.592  Sum_probs=213.4

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      ...|.+++.|++|++-+|+.+++.+..|+.+..++.+. +.||+|+|+|||||||||+||+++|+.....|+.+..+++.
T Consensus       147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv  226 (408)
T KOG0727|consen  147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV  226 (408)
T ss_pred             CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence            45678999999999999999999999999999999976 89999999999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC-----CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-----~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      .+|.|+...+++.+|+.|+.++|+||||||+|.++.+     .+......+++-.|++.|+++....   ++-||.+||+
T Consensus       227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~---nvkvimatnr  303 (408)
T KOG0727|consen  227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT---NVKVIMATNR  303 (408)
T ss_pred             HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc---ceEEEEecCc
Confidence            9999999999999999999999999999999999873     2223344678888888999886644   8999999999


Q ss_pred             CCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809         202 PWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN  271 (343)
Q Consensus       202 ~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~  271 (343)
                      .+.|||+++|  |+++.|.        +.-++.....++.+..++|++.+..+-+..|++||..+|++|.+.|+++..- 
T Consensus       304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry-  382 (408)
T KOG0727|consen  304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY-  382 (408)
T ss_pred             ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce-
Confidence            9999999999  9998887        5567777888889999999999999999999999999999999999987532 


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         272 AGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                                                          +|...||++|++.....
T Consensus       383 ------------------------------------vvl~kd~e~ay~~~vk~  399 (408)
T KOG0727|consen  383 ------------------------------------VVLQKDFEKAYKTVVKK  399 (408)
T ss_pred             ------------------------------------eeeHHHHHHHHHhhcCC
Confidence                                                38899999999988655

>KOG0652|consensus

Probab=100.00  E-value=8.9e-38  Score=267.33  Aligned_cols=245  Identities=32%  Similarity=0.525  Sum_probs=218.0

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      +...+..-.+...|..+++||+|++.+++.|.+.+..|+.+++.|..+ +.||.|+|+|||||||||.+||++|...+..
T Consensus       153 yDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT  232 (424)
T KOG0652|consen  153 YDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT  232 (424)
T ss_pred             hhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence            333344445688899999999999999999999999999999998875 8999999999999999999999999999999


Q ss_pred             eEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchh-----hhHHHHHHHhhhcccCCCCCCCC
Q psy7809         117 FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHE-----ATRRVRCELLSHMDGVGTGSGDK  191 (343)
Q Consensus       117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-----~~~~~~~~ll~~l~~~~~~~~~~  191 (343)
                      |..+-.+.+...+.|...+.++..|..|+..+|+||||||+|.+..+...++     ...+.+-.|+++++++.+..   
T Consensus       233 FLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~---  309 (424)
T KOG0652|consen  233 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD---  309 (424)
T ss_pred             HHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc---
Confidence            9999999999999999999999999999999999999999999987533222     23455566777778876644   


Q ss_pred             CEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         192 GVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       192 ~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      .+-||++||+.+-|||+++|  |+++.|.        |..|++++.+++....++++++||+.|++|+|+....+|-+|.
T Consensus       310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAG  389 (424)
T KOG0652|consen  310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAG  389 (424)
T ss_pred             ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhh
Confidence            89999999999999999998  9999887        9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         262 LIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       262 ~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                      +.|+||...                              .       |+.+||.+++..++
T Consensus       390 MiALRr~at------------------------------e-------v~heDfmegI~eVq  413 (424)
T KOG0652|consen  390 MIALRRGAT------------------------------E-------VTHEDFMEGILEVQ  413 (424)
T ss_pred             HHHHhcccc------------------------------c-------ccHHHHHHHHHHHH
Confidence            999998654                              2       99999999988764

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=291.14  Aligned_cols=238  Identities=37%  Similarity=0.567  Sum_probs=211.6

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      +...|..+|+||+|++.+++.|.+.+..|+.++.++... +.+++++|||||||||||++|+++|++++.+++.+.+.++
T Consensus       136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l  215 (398)
T PTZ00454        136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF  215 (398)
T ss_pred             ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence            557889999999999999999999999999999998864 6889999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ...+.+.....++.+|..+....|+||||||+|.++....     ......+++..|+..++++...   .+++||++||
T Consensus       216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~---~~v~VI~aTN  292 (398)
T PTZ00454        216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT---TNVKVIMATN  292 (398)
T ss_pred             HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC---CCEEEEEecC
Confidence            9999999999999999999999999999999999986321     1123446777888888876543   3799999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      +++.+|++++|  ||+..|.        |..||+.++....+..+++++.+|..|+||||+||.++|++|.+.|+++...
T Consensus       293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~  372 (398)
T PTZ00454        293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRY  372 (398)
T ss_pred             CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999998  9998887        9999999999988889999999999999999999999999999999977421


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                                                           .|+.+||.+|++.+...
T Consensus       373 -------------------------------------~i~~~df~~A~~~v~~~  389 (398)
T PTZ00454        373 -------------------------------------VILPKDFEKGYKTVVRK  389 (398)
T ss_pred             -------------------------------------ccCHHHHHHHHHHHHhc
Confidence                                                 29999999999998655

>KOG0726|consensus

Probab=100.00  E-value=7.8e-38  Score=271.27  Aligned_cols=238  Identities=37%  Similarity=0.564  Sum_probs=212.7

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      --+++.|..+|.|++|++.+++.+.+.+..|+.+|+++... +.||.||+|||+||||||.||+++|+.....|+.+..+
T Consensus       174 mK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGs  253 (440)
T KOG0726|consen  174 MKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGS  253 (440)
T ss_pred             eecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhH
Confidence            34678899999999999999999999999999999999865 89999999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhh---HHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEAT---RRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~---~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ++..+|.|+..+.++.+|+.|..++|+|+||||||++..+  ...+...   .+.+-.|+++++++.+.   ..|-||.+
T Consensus       254 eLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr---gDvKvimA  330 (440)
T KOG0726|consen  254 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR---GDVKVIMA  330 (440)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc---CCeEEEEe
Confidence            9999999999999999999999999999999999999873  1222222   34444666677777554   47999999


Q ss_pred             cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      ||+.+.|||+++|  |+++.|.        +..|+.++..++.+..+++++.+...-+.+||+||.++|.+|.+.|+|+.
T Consensus       331 Tnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer  410 (440)
T KOG0726|consen  331 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER  410 (440)
T ss_pred             cccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence            9999999999999  9999887        89999999999999999999999999999999999999999999999976


Q ss_pred             HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                      ..                                     .++.+||.+|.+++-
T Consensus       411 Rm-------------------------------------~vt~~DF~ka~e~V~  427 (440)
T KOG0726|consen  411 RM-------------------------------------KVTMEDFKKAKEKVL  427 (440)
T ss_pred             Hh-------------------------------------hccHHHHHHHHHHHH
Confidence            54                                     199999999998763

>CHL00195 ycf46 Ycf46; Provisional

Probab=100.00  E-value=9.2e-37  Score=293.10  Aligned_cols=245  Identities=27%  Similarity=0.315  Sum_probs=210.2

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY  130 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~  130 (343)
                      +..+|++|+|++.+|+.+.+......  ......++..++|+|||||||||||++|+++|++++.+++.+++..+.+.++
T Consensus       223 ~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v  300 (489)
T CHL00195        223 VNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV  300 (489)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence            46789999999999999987543221  1222334678899999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHcCCcEEEEcccccccCC---CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH
Q psy7809         131 GESEKLVRALFETARARAPAVIFIDEVDAFCSG---SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE  207 (343)
Q Consensus       131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~---~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~  207 (343)
                      |+++..++.+|..+...+||||||||||.++..   ....+...++++.|+..|+..     ..+++||+|||+++.||+
T Consensus       301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----~~~V~vIaTTN~~~~Ld~  375 (489)
T CHL00195        301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----KSPVFVVATANNIDLLPL  375 (489)
T ss_pred             ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----CCceEEEEecCChhhCCH
Confidence            999999999999999999999999999998863   223456678899999988743     347999999999999999


Q ss_pred             HHhc--cccCcch--------HHHHHhhhhcCCCC--CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy7809         208 ALKR--RFEKRIS--------PIQIIGLCLGEIRK--DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFT  275 (343)
Q Consensus       208 ~l~~--rf~~~i~--------r~~il~~~~~~~~~--~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~  275 (343)
                      +++|  ||+..++        |.+||+.++.+...  ..+.+++.||..|+||||+||.++|..|...|+.+.       
T Consensus       376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-------  448 (489)
T CHL00195        376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-------  448 (489)
T ss_pred             HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence            9998  9998887        99999999988643  357899999999999999999999999998887432       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHh
Q psy7809         276 GVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS--VDGALIRKYKRWNELY  340 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~--~~~~~~~~~~~~~~~~  340 (343)
                                              ++       ++.+||..|++.++|.  ...+.++.+++|...-
T Consensus       449 ------------------------~~-------lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~  484 (489)
T CHL00195        449 ------------------------RE-------FTTDDILLALKQFIPLAQTEKEQIEALQNWASSG  484 (489)
T ss_pred             ------------------------CC-------cCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence                                    13       8999999999999997  4788999999998753

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-37  Score=299.32  Aligned_cols=247  Identities=45%  Similarity=0.685  Sum_probs=225.3

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      .+....+..+|.+++|++.+++.+.+.+.+++.+++.+.. +..++.++|||||||||||++|+++|.+++.+|+.+..+
T Consensus       231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~  310 (494)
T COG0464         231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS  310 (494)
T ss_pred             ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence            5667888999999999999999999999999999998876 568888999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch--hhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH--EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      ++.++|+|++++.++.+|..|...+||||||||+|.++......  ....++.++++.+++++....   +|+||++||.
T Consensus       311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~---~v~vi~aTN~  387 (494)
T COG0464         311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE---GVLVIAATNR  387 (494)
T ss_pred             HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC---ceEEEecCCC
Confidence            99999999999999999999999999999999999999864432  333689999999999887654   7999999999


Q ss_pred             CCCCCHHHhc--cccCcch--------HHHHHhhhhcCCC--CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         202 PWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIR--KDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       202 ~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~--~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      |+.+|++++|  ||+..++        |.+|++.++....  +..++++..+++.|+||+++||..+|++|.+.++++..
T Consensus       388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~  467 (494)
T COG0464         388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR  467 (494)
T ss_pred             ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999  9999998        9999999999653  46789999999999999999999999999999998874


Q ss_pred             HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy7809         270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW  336 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~  336 (343)
                      .                             .+       ||.+||..|++..+|+++      |++|
T Consensus       468 ~-----------------------------~~-------~~~~~~~~a~~~~~p~~~------~~~~  492 (494)
T COG0464         468 R-----------------------------RE-------VTLDDFLDALKKIKPSVT------YEEW  492 (494)
T ss_pred             c-----------------------------CC-------ccHHHHHHHHHhcCCCCC------hhhc
Confidence            1                             12       999999999999999988      8888

>KOG0735|consensus

Probab=100.00  E-value=1.4e-36  Score=289.52  Aligned_cols=222  Identities=38%  Similarity=0.623  Sum_probs=206.8

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      +....+|+|++|+.++++.|.+.+.+|...|.+|... ++...|+|||||||||||+||.++|..++..|+.+..+++.+
T Consensus       660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~  739 (952)
T KOG0735|consen  660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS  739 (952)
T ss_pred             ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence            3444899999999999999999999999999999976 677889999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809         128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL  205 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l  205 (343)
                      +|.|.++..++.+|..|...+|||||+||+|.++++++  ..+...++.++|+.+|++.....   +|.|+++|.+|+.+
T Consensus       740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~---GV~i~aaTsRpdli  816 (952)
T KOG0735|consen  740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD---GVYILAATSRPDLI  816 (952)
T ss_pred             HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc---eEEEEEecCCcccc
Confidence            99999999999999999999999999999999998533  45678999999999999987644   89999999999999


Q ss_pred             CHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809         206 DEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG  273 (343)
Q Consensus       206 ~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~  273 (343)
                      ||+++|  |+++.+.        |.+|++.+........++|++.+|..|+||||+||..++.+|...|+.+...+.+
T Consensus       817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~  894 (952)
T KOG0735|consen  817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED  894 (952)
T ss_pred             CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence            999999  9999887        9999999999888899999999999999999999999999999999999987544

>KOG0729|consensus

Probab=100.00  E-value=2.3e-36  Score=259.36  Aligned_cols=236  Identities=33%  Similarity=0.556  Sum_probs=210.5

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      ++..|.+++.|++|..++++.|++.+..|+.+|+.|-.+ +.||.|+|+|||||||||.+||++|++.+.-|+.+-.+++
T Consensus       168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel  247 (435)
T KOG0729|consen  168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL  247 (435)
T ss_pred             eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence            677889999999999999999999999999999988765 8999999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ..+|+|+...+++++|..|+....||||+||||.+.+..-     ......+.+-.|+.+++++..   ..++-|+.+||
T Consensus       248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp---rgnikvlmatn  324 (435)
T KOG0729|consen  248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP---RGNIKVLMATN  324 (435)
T ss_pred             HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC---CCCeEEEeecC
Confidence            9999999999999999999999999999999999987321     112223445556666676654   45899999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      +|+.|||+++|  |+++.+.        |..|++++.+.+.+..++-++.||+.+...+|++|+.+|.+|.+.|++....
T Consensus       325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk  404 (435)
T KOG0729|consen  325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK  404 (435)
T ss_pred             CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence            99999999999  9988887        9999999999999999999999999999999999999999999999986544


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                                                           +.|..||.+|+.++.
T Consensus       405 -------------------------------------~atekdfl~av~kvv  419 (435)
T KOG0729|consen  405 -------------------------------------VATEKDFLDAVNKVV  419 (435)
T ss_pred             -------------------------------------hhhHHHHHHHHHHHH
Confidence                                                 288899999999873

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=100.00  E-value=7.1e-36  Score=282.53  Aligned_cols=244  Identities=37%  Similarity=0.591  Sum_probs=212.0

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ...+...|...|++|+|++++++.+.+.+..++.++.++... +.++.++|||||||||||++|+++|++++.+|+.+++
T Consensus       119 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~  198 (389)
T PRK03992        119 AMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG  198 (389)
T ss_pred             eeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence            334567788999999999999999999999999999988764 6889999999999999999999999999999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809         123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLA  197 (343)
Q Consensus       123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~  197 (343)
                      .++...+.|.....++.+|..+....|+||||||+|.++.....     .....+.+..++..++++..   ..++.||+
T Consensus       199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~---~~~v~VI~  275 (389)
T PRK03992        199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP---RGNVKIIA  275 (389)
T ss_pred             HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC---CCCEEEEE
Confidence            99999999999999999999999999999999999999863221     12233455667777776544   33799999


Q ss_pred             ecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809         198 ATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       198 ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r  267 (343)
                      |||.++.+|+++++  ||+..+.        |.+||+.++....+..++++..+|..|+||+++||..+|++|.+.|+++
T Consensus       276 aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~  355 (389)
T PRK03992        276 ATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD  355 (389)
T ss_pred             ecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence            99999999999998  9998886        9999999999888888899999999999999999999999999999876


Q ss_pred             HHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCH
Q psy7809         268 VIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDG  327 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~  327 (343)
                      ...                              .       |+.+||.+|++.++++...
T Consensus       356 ~~~------------------------------~-------i~~~d~~~A~~~~~~~~~~  378 (389)
T PRK03992        356 DRT------------------------------E-------VTMEDFLKAIEKVMGKEEK  378 (389)
T ss_pred             CCC------------------------------C-------cCHHHHHHHHHHHhccccc
Confidence            321                              2       9999999999999887543

>KOG0731|consensus

Probab=100.00  E-value=5.3e-36  Score=293.02  Aligned_cols=234  Identities=39%  Similarity=0.621  Sum_probs=210.6

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      .....+.|+|+.|.+++|+.|.+++.. +.+|+.+..+ ...|+|+||+||||||||.||+|+|.+.+.||+.++.+++.
T Consensus       303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv  381 (774)
T KOG0731|consen  303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV  381 (774)
T ss_pred             CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence            445569999999999999999998864 5777777754 79999999999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC------CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS------REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~------~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ..+++.....++.+|..++.++|||+||||||.+....      ..+......+++|+..||++...   ..|+|+++||
T Consensus       382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~---~~vi~~a~tn  458 (774)
T KOG0731|consen  382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS---KGVIVLAATN  458 (774)
T ss_pred             HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC---CcEEEEeccC
Confidence            99998888999999999999999999999999998743      23445668899999999999765   3899999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      +++.||++++|  ||++.|.        |..|++.|++..... +++++..||.+|.||+|+||.++|.+|...|.|+..
T Consensus       459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~  538 (774)
T KOG0731|consen  459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL  538 (774)
T ss_pred             CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence            99999999999  9999998        999999999999774 889999999999999999999999999999998865


Q ss_pred             HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                      .                              .       |+..||+.|++.+.
T Consensus       539 ~------------------------------~-------i~~~~~~~a~~Rvi  554 (774)
T KOG0731|consen  539 R------------------------------E-------IGTKDLEYAIERVI  554 (774)
T ss_pred             C------------------------------c-------cchhhHHHHHHHHh
Confidence            4                              2       89999999999554

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=100.00  E-value=3.2e-35  Score=278.51  Aligned_cols=237  Identities=38%  Similarity=0.585  Sum_probs=208.8

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      -+.+.|..+|+||+|++.+++.+.+.+..++.++.++... +.++.++|||||||||||++|+++|++++.+|+.+..++
T Consensus       173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se  252 (438)
T PTZ00361        173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE  252 (438)
T ss_pred             ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence            3677888999999999999999999999999999988864 688899999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      +...+.+.....++.+|..+....|+||||||+|.++....     ......+.+..++..++++...   .++.||++|
T Consensus       253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~---~~V~VI~AT  329 (438)
T PTZ00361        253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR---GDVKVIMAT  329 (438)
T ss_pred             hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc---CCeEEEEec
Confidence            99999999999999999999999999999999999986321     1122345566777777776443   378999999


Q ss_pred             CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      |+++.+|++++|  ||+..|.        |.+||+.++....+..+++++.++..++|||++||.++|..|...|+++..
T Consensus       330 Nr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r  409 (438)
T PTZ00361        330 NRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR  409 (438)
T ss_pred             CChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            999999999987  9998887        999999999998888899999999999999999999999999999998753


Q ss_pred             HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                      .                                     .|+.+||.+|++++.
T Consensus       410 ~-------------------------------------~Vt~~D~~~A~~~v~  425 (438)
T PTZ00361        410 M-------------------------------------KVTQADFRKAKEKVL  425 (438)
T ss_pred             C-------------------------------------ccCHHHHHHHHHHHH
Confidence            2                                     299999999999974

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=100.00  E-value=6.7e-34  Score=277.81  Aligned_cols=236  Identities=36%  Similarity=0.566  Sum_probs=203.3

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      ....+..+|+|++|++++++.+.+.+.. +.++..+.. +...++++||+||||||||++|+++|.+++.+++.+++.++
T Consensus        46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~  124 (495)
T TIGR01241        46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF  124 (495)
T ss_pred             cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence            3446789999999999999999988775 556665553 36788999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ...+.+...+.++.+|..+....|+||||||+|.++....     ......+.++.|+..|+++...   .+++||+|||
T Consensus       125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~---~~v~vI~aTn  201 (495)
T TIGR01241       125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN---TGVIVIAATN  201 (495)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC---CCeEEEEecC
Confidence            9888888889999999999999999999999999986422     1334457888999999887553   3799999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .++.||++++|  ||+..+.        |.+|++.++.......++++..+|..|.|||++||.++|++|...|.++...
T Consensus       202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~  281 (495)
T TIGR01241       202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT  281 (495)
T ss_pred             ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999998  9998887        9999999998887777899999999999999999999999998877654211


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK  323 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p  323 (343)
                                                    +       |+.+||..|+.....
T Consensus       282 ------------------------------~-------i~~~~l~~a~~~~~~  297 (495)
T TIGR01241       282 ------------------------------E-------ITMNDIEEAIDRVIA  297 (495)
T ss_pred             ------------------------------C-------CCHHHHHHHHHHHhc
Confidence                                          2       999999999998753

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-34  Score=275.50  Aligned_cols=232  Identities=36%  Similarity=0.549  Sum_probs=208.7

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHh-ccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK-GILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      ...+.|.|+.|.++.|+.+.+.+... ..|.-+. -+..-|+|++|+||||||||.||+++|.+.+.||+.++.+++...
T Consensus       144 ~~~v~F~DVAG~dEakeel~EiVdfL-k~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem  222 (596)
T COG0465         144 QVKVTFADVAGVDEAKEELSELVDFL-KNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM  222 (596)
T ss_pred             ccCcChhhhcCcHHHHHHHHHHHHHH-hCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence            56789999999999999999988754 4444443 345888999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      ++|-....++.+|..|+.++|||+||||+|.+...+     ..+....+.+++|+..||++..+   ..|++|++||+|+
T Consensus       223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~---~gviviaaTNRpd  299 (596)
T COG0465         223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN---EGVIVIAATNRPD  299 (596)
T ss_pred             hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC---CceEEEecCCCcc
Confidence            999999999999999999999999999999998643     34455567999999999999854   4899999999999


Q ss_pred             CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809         204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG  273 (343)
Q Consensus       204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~  273 (343)
                      -||++++|  ||++.+.        |++|++.+++...+..++++..+|+.|.||+++|+.+++.+|...|.++...   
T Consensus       300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~---  376 (596)
T COG0465         300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK---  376 (596)
T ss_pred             cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe---
Confidence            99999999  9999997        9999999999999999999999999999999999999999999999998654   


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                                                 .       +++.||++|..++-
T Consensus       377 ---------------------------~-------i~~~~i~ea~drv~  391 (596)
T COG0465         377 ---------------------------E-------ITMRDIEEAIDRVI  391 (596)
T ss_pred             ---------------------------e-------EeccchHHHHHHHh
Confidence                                       2       88999999999873

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=100.00  E-value=5.8e-33  Score=261.55  Aligned_cols=235  Identities=39%  Similarity=0.652  Sum_probs=202.7

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      +...|...|++|+|++++++.+.+.+..++.++..+... ..++.++||+||||||||++|+++|++++.+++.+.+.++
T Consensus       113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l  192 (364)
T TIGR01242       113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL  192 (364)
T ss_pred             eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence            456788999999999999999999999999999888754 6888999999999999999999999999999999999888


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ...+.+.....+..+|..+....|+||||||+|.+......     .....+.+..++..++++..   ..++.||+|||
T Consensus       193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~---~~~v~vI~ttn  269 (364)
T TIGR01242       193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP---RGNVKVIAATN  269 (364)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC---CCCEEEEEecC
Confidence            88888888888999999999999999999999999753211     12223455666766766543   23799999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .++.+|+++++  ||+..+.        |.+|++.++.......+++++.+|..|+||+++||..+|..|.+.|+++...
T Consensus       270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~  349 (364)
T TIGR01242       270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERD  349 (364)
T ss_pred             ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999998  8888775        9999999998887777899999999999999999999999999999876321


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhc
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC  321 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~  321 (343)
                                                           .|+.+||.+|++++
T Consensus       350 -------------------------------------~i~~~d~~~a~~~~  363 (364)
T TIGR01242       350 -------------------------------------YVTMDDFIKAVEKV  363 (364)
T ss_pred             -------------------------------------ccCHHHHHHHHHHh
Confidence                                                 29999999999875

Many proteins may score above the trusted cutoff because an internal

>KOG0741|consensus

Probab=100.00  E-value=2e-33  Score=260.50  Aligned_cols=260  Identities=28%  Similarity=0.484  Sum_probs=212.9

Q ss_pred             CCCCCCCc--ccccHH-HHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCC-ceEEEcCCc
Q psy7809          50 DTGVGWDD--IAGLDN-VKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGS-TFFNVLPSS  124 (343)
Q Consensus        50 ~~~~~~~~--l~G~~~-~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~v~~~~  124 (343)
                      .|...|++  |+|++. .-...++.+.....-|....++ +...+|+|||||||||||.+||.|.+.++. +-..|+.++
T Consensus       213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe  292 (744)
T KOG0741|consen  213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE  292 (744)
T ss_pred             CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence            34455665  678874 4444566666666667776665 678899999999999999999999999974 567889999


Q ss_pred             cccccccchHHHHHHHHHHHHHcC--------CcEEEEcccccccCC----CCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         125 LTSKHYGESEKLVRALFETARARA--------PAVIFIDEVDAFCSG----SREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~--------p~il~iDeid~l~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      +.++|+|+++.+++.+|..|....        -.||++||||++|..    ....+....+.++|+..||+...-+   +
T Consensus       293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN---N  369 (744)
T KOG0741|consen  293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN---N  369 (744)
T ss_pred             HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh---c
Confidence            999999999999999999885422        139999999999973    3345677899999999999987755   9


Q ss_pred             EEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCC----CCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809         193 VLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEI----RKDPNVDVATLSKQLIGYSGSDIRDLCQ  258 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~----~~~~~~~~~~la~~t~g~s~~di~~l~~  258 (343)
                      ++||+.||+.+.+|++|+|  ||+..+.        |.+|++++.+++    .+..++|+.+||.+|..|||++|.-+++
T Consensus       370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk  449 (744)
T KOG0741|consen  370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK  449 (744)
T ss_pred             EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence            9999999999999999999  8877665        999999999886    4568999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC--CCHHHHHHHH
Q psy7809         259 EIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS--VDGALIRKYK  334 (343)
Q Consensus       259 ~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~--~~~~~~~~~~  334 (343)
                      .|...|+.|+.+....                      ...-+.....+.|+++||..|+..++|.  ++++++..|.
T Consensus       450 sA~S~A~nR~vk~~~~----------------------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~  505 (744)
T KOG0741|consen  450 SAQSFAMNRHVKAGGK----------------------VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV  505 (744)
T ss_pred             HHHHHHHHhhhccCcc----------------------eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence            9999999999862211                      1122345556779999999999999998  4777777664

>KOG0651|consensus

Probab=100.00  E-value=3.5e-33  Score=244.31  Aligned_cols=239  Identities=31%  Similarity=0.529  Sum_probs=209.8

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      .+.....+|+.+.|.-.+...+++.+..|+..|.++.. ++.+|.+++||||||+|||.+|+++|..++.+|+.+..+.+
T Consensus       123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l  202 (388)
T KOG0651|consen  123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL  202 (388)
T ss_pred             hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence            34445679999999999999999999999999999997 58999999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      .+++.|++.+.+++.|..|....|||||+||||++.+.  .........+..+|++.+++........+|-+|.|||+|+
T Consensus       203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd  282 (388)
T KOG0651|consen  203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD  282 (388)
T ss_pred             hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence            99999999999999999999999999999999999873  2223344556666666655554444455899999999999


Q ss_pred             CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809         204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG  273 (343)
Q Consensus       204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~  273 (343)
                      .|+|+|+|  |+++.++        |..|++++...+.....++.+.+.+.++||.+.|+++.|++|-+.|++....   
T Consensus       283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~---  359 (388)
T KOG0651|consen  283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD---  359 (388)
T ss_pred             ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH---
Confidence            99999999  9888887        9999999999988889999999999999999999999999999998876543   


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                                                        .+-.|||.+|+.+..
T Consensus       360 ----------------------------------~vl~Ed~~k~vrk~~  374 (388)
T KOG0651|consen  360 ----------------------------------EVLHEDFMKLVRKQA  374 (388)
T ss_pred             ----------------------------------HHhHHHHHHHHHHHH
Confidence                                              277899999998763

>CHL00176 ftsH cell division protein; Validated

Probab=100.00  E-value=6.4e-32  Score=267.28  Aligned_cols=230  Identities=33%  Similarity=0.574  Sum_probs=197.8

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH  129 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~  129 (343)
                      +..+|+|++|++++++.+.+.+.. +..+..+.. +...+.++||+||||||||++|+++|.+++.+++.++++++...+
T Consensus       178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~  256 (638)
T CHL00176        178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF  256 (638)
T ss_pred             CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence            457899999999999999998765 455555443 357788999999999999999999999999999999999998888


Q ss_pred             ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809         130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD  204 (343)
Q Consensus       130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~  204 (343)
                      .+.....++.+|..+....||||||||+|.++...     ..+......++.|+..++++...   .+++||++||+++.
T Consensus       257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~---~~ViVIaaTN~~~~  333 (638)
T CHL00176        257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN---KGVIVIAATNRVDI  333 (638)
T ss_pred             hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC---CCeeEEEecCchHh
Confidence            88777889999999999999999999999997532     22344557888999999887553   38999999999999


Q ss_pred             CCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccc
Q psy7809         205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGF  274 (343)
Q Consensus       205 l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~  274 (343)
                      +|++++|  ||+..+.        |.+||+.++.......++++..+|..|.||+++||.++|++|...|.++...    
T Consensus       334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~----  409 (638)
T CHL00176        334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKA----  409 (638)
T ss_pred             hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC----
Confidence            9999998  8998886        9999999999887778899999999999999999999999998888765321    


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhc
Q psy7809         275 TGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC  321 (343)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~  321 (343)
                                                .       |+.+||+.|+..+
T Consensus       410 --------------------------~-------It~~dl~~Ai~rv  423 (638)
T CHL00176        410 --------------------------T-------ITMKEIDTAIDRV  423 (638)
T ss_pred             --------------------------C-------cCHHHHHHHHHHH
Confidence                                      2       9999999999987

>KOG0730|consensus

Probab=100.00  E-value=5.8e-32  Score=257.65  Aligned_cols=214  Identities=40%  Similarity=0.676  Sum_probs=198.8

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH  129 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~  129 (343)
                      +..+ .+++|.......+++.+..++.++.++... .++|+++|+|||||+|||.+++++|++.+.+++.++++++..++
T Consensus       180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~  258 (693)
T KOG0730|consen  180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF  258 (693)
T ss_pred             cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence            5566 799999999999999999999999998754 79999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchh-hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH
Q psy7809         130 YGESEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHE-ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE  207 (343)
Q Consensus       130 ~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~  207 (343)
                      .|++++.++..|..|..++ |+++||||+|.++++..... ...++..+++..+++....   .+++||++||+|..||+
T Consensus       259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~---~~vivl~atnrp~sld~  335 (693)
T KOG0730|consen  259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPD---AKVIVLAATNRPDSLDP  335 (693)
T ss_pred             ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCc---CcEEEEEecCCccccCh
Confidence            9999999999999999999 99999999999998644433 4889999999999998753   48999999999999999


Q ss_pred             HHhc-cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         208 ALKR-RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       208 ~l~~-rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      +++| ||++.+.        |.+|++.+++.+...+++++..+|..|.||+|+||..+|..|...+.++.
T Consensus       336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~  405 (693)
T KOG0730|consen  336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRT  405 (693)
T ss_pred             hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhh
Confidence            9998 9999987        99999999999988888999999999999999999999999999999883

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.98  E-value=5.3e-31  Score=252.99  Aligned_cols=244  Identities=31%  Similarity=0.482  Sum_probs=198.5

Q ss_pred             hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCc----
Q psy7809          42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGST----  116 (343)
Q Consensus        42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----  116 (343)
                      +..-++.+.|..+|++|+|++.+++.+.+.+..++.++.++... +.+++++|||||||||||++|+++|++++.+    
T Consensus       168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~  247 (512)
T TIGR03689       168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE  247 (512)
T ss_pred             HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence            44456788899999999999999999999999999999998854 7889999999999999999999999998654    


Q ss_pred             ------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCC---chhhhHHHHHHHhhhccc
Q psy7809         117 ------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDG  183 (343)
Q Consensus       117 ------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~---~~~~~~~~~~~ll~~l~~  183 (343)
                            |+.+...++..++.++.+..++.+|..+...    .|+||||||+|.++....   .++....++++|+..|++
T Consensus       248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg  327 (512)
T TIGR03689       248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG  327 (512)
T ss_pred             cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence                  5567778888999999999999999988764    699999999999987432   234456788999999998


Q ss_pred             CCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCC-CCC---------CcccHHHHHH
Q psy7809         184 VGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEI-RKD---------PNVDVATLSK  243 (343)
Q Consensus       184 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~-~~~---------~~~~~~~la~  243 (343)
                      +...   .+++||+|||+++.||++++|  ||+..|.        |.+||+.++... ...         ...++..+++
T Consensus       328 l~~~---~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~  404 (512)
T TIGR03689       328 VESL---DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQ  404 (512)
T ss_pred             cccC---CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHH
Confidence            8653   379999999999999999999  9999887        999999988653 221         1223333333


Q ss_pred             H-----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCC
Q psy7809         244 Q-----------------------------LIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDD  294 (343)
Q Consensus       244 ~-----------------------------t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (343)
                      .                             ++.+||++|.++|.+|...|+.+.....                      
T Consensus       405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~----------------------  462 (512)
T TIGR03689       405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG----------------------  462 (512)
T ss_pred             HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC----------------------
Confidence            3                             4567899999999999999998877410                      


Q ss_pred             CccccCCCCCCcccccHHHHHHHHHhc
Q psy7809         295 SKCQVAPLGSDRIVLNRSHFERAKEKC  321 (343)
Q Consensus       295 ~~~~~~~~~~~~~~lt~~df~~Al~~~  321 (343)
                          .+       .|+.+|+..|+..-
T Consensus       463 ----~~-------~~~~~~l~~a~~~e  478 (512)
T TIGR03689       463 ----QV-------GLRIEHLLAAVLDE  478 (512)
T ss_pred             ----Cc-------CcCHHHHHHHHHHh
Confidence                01       28999999999765

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.97  E-value=3.5e-30  Score=262.47  Aligned_cols=255  Identities=35%  Similarity=0.575  Sum_probs=214.6

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      .+..+|+||+|++.+++.+.+.+..++.+++++..+ +.++.++|||||||||||++++++|++++.+++.+++.++...
T Consensus       172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~  251 (733)
T TIGR01243       172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK  251 (733)
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence            467899999999999999999999999999988765 6888999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD  206 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~  206 (343)
                      +.+.....++.+|..+....|+||||||+|.++....  ......++.+.|+..++++...   ..++||++||.++.+|
T Consensus       252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~---~~vivI~atn~~~~ld  328 (733)
T TIGR01243       252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR---GRVIVIGATNRPDALD  328 (733)
T ss_pred             cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC---CCEEEEeecCChhhcC
Confidence            9999999999999999999999999999999987432  2344567889999999887543   3799999999999999


Q ss_pred             HHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy7809         207 EALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG  276 (343)
Q Consensus       207 ~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~  276 (343)
                      +++++  ||+..+.        |.+||+.+.....+..+.+++.+++.+.||+++||..+|+.|...++++........ 
T Consensus       329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~-  407 (733)
T TIGR01243       329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN-  407 (733)
T ss_pred             HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc-
Confidence            99998  8988776        999999998888777889999999999999999999999999999999876411100 


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCC
Q psy7809         277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV  325 (343)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~  325 (343)
                           .          ....+  ...-.....++.+||..|++.++|+.
T Consensus       408 -----~----------~~~~i--~~~~~~~~~v~~~df~~Al~~v~ps~  439 (733)
T TIGR01243       408 -----F----------EAEEI--PAEVLKELKVTMKDFMEALKMVEPSA  439 (733)
T ss_pred             -----c----------ccccc--cchhcccccccHHHHHHHHhhccccc
Confidence                 0          00000  00011233589999999999998774

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.97  E-value=4.6e-30  Score=256.59  Aligned_cols=234  Identities=35%  Similarity=0.546  Sum_probs=200.2

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHh-ccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK-GILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      .....|+++.|.+..++.+.+.+... ..+..+. .....+.+++|+||||||||++++++|.+++.+|+.+++.++...
T Consensus       146 ~~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~  224 (644)
T PRK10733        146 QIKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM  224 (644)
T ss_pred             hhhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence            34577899999999999999988764 3333333 234667899999999999999999999999999999999999888


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      +.+.....++.+|..+....|+||||||+|.++....     ......+.++.|+..|+++....   +++||++||.|+
T Consensus       225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~---~vivIaaTN~p~  301 (644)
T PRK10733        225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE---GIIVIAATNRPD  301 (644)
T ss_pred             hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC---CeeEEEecCChh
Confidence            8888888999999999999999999999999976322     23345678899999999886543   899999999999


Q ss_pred             CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809         204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG  273 (343)
Q Consensus       204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~  273 (343)
                      .||++++|  ||++.+.        |.+||+.++....+..++++..+|+.|.|||++||.++|++|...|.++...   
T Consensus       302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~---  378 (644)
T PRK10733        302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR---  378 (644)
T ss_pred             hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCC---
Confidence            99999998  9998887        9999999999988888999999999999999999999999999998865321   


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                                                        .|+.+||++|+..+.+.
T Consensus       379 ----------------------------------~i~~~d~~~a~~~v~~g  395 (644)
T PRK10733        379 ----------------------------------VVSMVEFEKAKDKIMMG  395 (644)
T ss_pred             ----------------------------------cccHHHHHHHHHHHhcc
Confidence                                              29999999999877543

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.97  E-value=3.5e-30  Score=268.41  Aligned_cols=197  Identities=19%  Similarity=0.286  Sum_probs=160.6

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc----------cc-----------------------
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH----------YG-----------------------  131 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~----------~~-----------------------  131 (343)
                      +..+|+||||+||||||||+||+++|.+++.||+.++++++...+          +|                       
T Consensus      1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206       1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred             CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence            468899999999999999999999999999999999999888543          11                       


Q ss_pred             --------ch--HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         132 --------ES--EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       132 --------~~--~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                              ..  ...++.+|+.|+.++||||+|||||.++...    .....++.|+..|++........+|+|||+||+
T Consensus      1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206       1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----SNYLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred             chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----cceehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence                    11  1237889999999999999999999997641    112347888899987654333558999999999


Q ss_pred             CCCCCHHHhc--cccCcch--------HHHHHhhhh--cCCCCCC-cccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         202 PWDLDEALKR--RFEKRIS--------PIQIIGLCL--GEIRKDP-NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       202 ~~~l~~~l~~--rf~~~i~--------r~~il~~~~--~~~~~~~-~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      |+.|||+++|  ||++.|.        |.+++..++  +...... .++++.+|+.|.||||+||.++|++|+..|+++.
T Consensus      1782 PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206       1782 PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred             cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            9999999999  9999886        777777543  3444443 3689999999999999999999999999999875


Q ss_pred             HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                      ..                                     .|+.+||..|+....
T Consensus      1862 ks-------------------------------------~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206       1862 KS-------------------------------------IIDTNTIRSALHRQT 1878 (2281)
T ss_pred             CC-------------------------------------ccCHHHHHHHHHHHH
Confidence            32                                     288899999998764

>KOG0732|consensus

Probab=99.96  E-value=9.2e-29  Score=248.22  Aligned_cols=254  Identities=33%  Similarity=0.573  Sum_probs=212.0

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL  121 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~  121 (343)
                      .....++|++++|++.+++.|++.+..|+.+|+.+..+ +.+|+|+|++||||||||..|+++|..+.     ..|+.-.
T Consensus       257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk  336 (1080)
T KOG0732|consen  257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK  336 (1080)
T ss_pred             hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence            34456899999999999999999999999999999866 89999999999999999999999998873     3566667


Q ss_pred             CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ..+..++++|+.+..++.+|..|+...|+|+|+||||-|++..  .+......+..+|+..|+++.+..   .|+|||+|
T Consensus       337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg---qVvvigAT  413 (1080)
T KOG0732|consen  337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG---QVVVIGAT  413 (1080)
T ss_pred             CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC---ceEEEccc
Confidence            7889999999999999999999999999999999999998843  344556789999999999997754   89999999


Q ss_pred             CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      |+++.+|++++|  ||++.++        |..|+.++..... .....-++.||+.|.||.|+||+.+|..|...++++.
T Consensus       414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~  493 (1080)
T KOG0732|consen  414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS  493 (1080)
T ss_pred             CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence            999999999999  9999887        9999999988773 3344557899999999999999999999999999876


Q ss_pred             HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCC
Q psy7809         269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV  325 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~  325 (343)
                      .-+ .|..     .+            .+.   -+...+.|...||..|+.+..|+.
T Consensus       494 ~Pq-~y~s-----~~------------kl~---~d~~~ikV~~~~f~~A~~~i~ps~  529 (1080)
T KOG0732|consen  494 FPQ-IYSS-----SD------------KLL---IDVALIKVEVRDFVEAMSRITPSS  529 (1080)
T ss_pred             cCe-eecc-----cc------------ccc---ccchhhhhhhHhhhhhhhccCCCC
Confidence            431 0100     00            000   122334488899999999988764

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.96  E-value=4e-28  Score=220.24  Aligned_cols=162  Identities=20%  Similarity=0.214  Sum_probs=137.3

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHc-----CCcEEEEccccc
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARAR-----APAVIFIDEVDA  159 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~  159 (343)
                      ++++|.+++||||||||||++|+++|++++.+++.++..++.++++|++++.++.+|..|...     +||||||||||.
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA  223 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA  223 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence            358999999999999999999999999999999999999999999999999999999999764     699999999999


Q ss_pred             ccCCCC--chhhhHHH-HHHHhhhcccCC---------CCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch------H
Q psy7809         160 FCSGSR--EHEATRRV-RCELLSHMDGVG---------TGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------P  219 (343)
Q Consensus       160 l~~~~~--~~~~~~~~-~~~ll~~l~~~~---------~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~------r  219 (343)
                      +++...  +.....++ ..+|+..+|+..         ......+|+||+|||+|+.||++++|  ||++.+.      |
T Consensus       224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R  303 (413)
T PLN00020        224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR  303 (413)
T ss_pred             cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHH
Confidence            998532  22333445 478999887642         11224579999999999999999999  9999877      9


Q ss_pred             HHHHhhhhcCCCCCCcccHHHHHHHccC
Q psy7809         220 IQIIGLCLGEIRKDPNVDVATLSKQLIG  247 (343)
Q Consensus       220 ~~il~~~~~~~~~~~~~~~~~la~~t~g  247 (343)
                      .+||+.+++...+. ..++..|+..+.|
T Consensus       304 ~eIL~~~~r~~~l~-~~dv~~Lv~~f~g  330 (413)
T PLN00020        304 IGVVHGIFRDDGVS-REDVVKLVDTFPG  330 (413)
T ss_pred             HHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence            99999999987654 5777888887766

>KOG0736|consensus

Probab=99.89  E-value=6.5e-22  Score=191.37  Aligned_cols=233  Identities=23%  Similarity=0.338  Sum_probs=180.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH  167 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~  167 (343)
                      ....+||+|+||||||++++++|.++|.|++.++|.++.+...+..+.++..+|..++.+.|+||||-++|.+.....+ 
T Consensus       430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-  508 (953)
T KOG0736|consen  430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-  508 (953)
T ss_pred             cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-
Confidence            3457999999999999999999999999999999999999999999999999999999999999999999999853333 


Q ss_pred             hhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCCCcccHH
Q psy7809         168 EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVDVA  239 (343)
Q Consensus       168 ~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~~~  239 (343)
                      ....+++..+...+..--......+++||++++..+.+++.+++.|.+.|.        |.+||++++....+..++...
T Consensus       509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k  588 (953)
T KOG0736|consen  509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK  588 (953)
T ss_pred             chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence            444455555555444111111244899999999999999999996666665        999999999999988999999


Q ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHH
Q psy7809         240 TLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKE  319 (343)
Q Consensus       240 ~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~  319 (343)
                      .+|.+|.||+.+|+..++..+-..+..+... .+..+......++                .+......++++||.+|+.
T Consensus       589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~-~~l~g~~~~~~~~----------------~~~~~~~~l~~edf~kals  651 (953)
T KOG0736|consen  589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKN-KGLAGGLQEEDEG----------------ELCAAGFLLTEEDFDKALS  651 (953)
T ss_pred             HHHHhcCCCCHHHHHHHhcCchHHHHHHHHh-hcccccchhcccc----------------ccccccceecHHHHHHHHH
Confidence            9999999999999999998884444444433 2222111111000                1222345699999999999


Q ss_pred             hcC------------CCCCHHHHHHHHHHHH
Q psy7809         320 KCR------------KSVDGALIRKYKRWNE  338 (343)
Q Consensus       320 ~~~------------p~~~~~~~~~~~~~~~  338 (343)
                      +++            |+|+|+++--+++...
T Consensus       652 ~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~  682 (953)
T KOG0736|consen  652 RLQKEFSDAIGAPKIPNVSWDDVGGLEEVKT  682 (953)
T ss_pred             HHHHhhhhhcCCCCCCccchhcccCHHHHHH
Confidence            775            8899998877766543

>KOG0735|consensus

Probab=99.89  E-value=3.8e-22  Score=191.37  Aligned_cols=224  Identities=23%  Similarity=0.260  Sum_probs=171.4

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCCcccccccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPSSLTSKHYG  131 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~~l~~~~~~  131 (343)
                      .|++-...+|+...+....|          +..+.++||+||+|||||.||++++.++.    +++..++|+.+......
T Consensus       408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e  477 (952)
T KOG0735|consen  408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE  477 (952)
T ss_pred             Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence            45666667777666644444          23456899999999999999999999874    57889999999988888


Q ss_pred             chHHHHHHHHHHHHHcCCcEEEEcccccccCC-CC---chhhhHHHHHHHh-hhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809         132 ESEKLVRALFETARARAPAVIFIDEVDAFCSG-SR---EHEATRRVRCELL-SHMDGVGTGSGDKGVLVLAATNHPWDLD  206 (343)
Q Consensus       132 ~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-~~---~~~~~~~~~~~ll-~~l~~~~~~~~~~~v~vI~ttn~~~~l~  206 (343)
                      ...+.+..+|..|.|++|+||+||++|.|++. ..   +.......+..++ +.+..+...  ...+.||+|.+....++
T Consensus       478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~--~~~ia~Iat~qe~qtl~  555 (952)
T KOG0735|consen  478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKR--NRKIAVIATGQELQTLN  555 (952)
T ss_pred             HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHcc--CcEEEEEEechhhhhcC
Confidence            88999999999999999999999999999972 11   2222233333444 333333332  33679999999999999


Q ss_pred             HHHhc--cccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy7809         207 EALKR--RFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFT  275 (343)
Q Consensus       207 ~~l~~--rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~  275 (343)
                      +.+.+  +|+..+.        |.+||+..+.+.... ..-|++.++..|+||...|+..++++|++.|+.+...     
T Consensus       556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris-----  630 (952)
T KOG0735|consen  556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS-----  630 (952)
T ss_pred             hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-----
Confidence            99988  6666555        999999988876321 2344555999999999999999999999999965543     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         276 GVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                                                 +.+. .+|.++|.++++.+.|.
T Consensus       631 ---------------------------~~~k-lltke~f~ksL~~F~P~  651 (952)
T KOG0735|consen  631 ---------------------------NGPK-LLTKELFEKSLKDFVPL  651 (952)
T ss_pred             ---------------------------cCcc-cchHHHHHHHHHhcChH
Confidence                                       0111 49999999999999875

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.87  E-value=2.1e-21  Score=174.87  Aligned_cols=208  Identities=21%  Similarity=0.271  Sum_probs=148.6

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccC---CCCceEEEEcCCCchHHHHHHHHHHHh-------CCceEEEcCC
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL---RPWRGILLFGPPGTGKTLLAKAVASQH-------GSTFFNVLPS  123 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~---~~~~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~~v~~~  123 (343)
                      .+++++|++++|+++.+++.+..........+.   ....+++|+||||||||++|+++|+.+       ..+++++++.
T Consensus         4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~   83 (261)
T TIGR02881         4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA   83 (261)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence            467899999999999999887755443333332   234579999999999999999999875       2478889999


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      ++.+.+++.....+..+|..+.   ++||||||+|.|... .+.......+..|+..++...     ..+++|+++...+
T Consensus        84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~-~~~~~~~~~i~~Ll~~~e~~~-----~~~~vila~~~~~  154 (261)
T TIGR02881        84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG-GEKDFGKEAIDTLVKGMEDNR-----NEFVLILAGYSDE  154 (261)
T ss_pred             HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC-CccchHHHHHHHHHHHHhccC-----CCEEEEecCCcch
Confidence            9999999998888888887764   479999999999642 222234566778888887542     2456666554322


Q ss_pred             -----CCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHc-------c--CCCHHHHHHHHHHH
Q psy7809         204 -----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQL-------I--GYSGSDIRDLCQEI  260 (343)
Q Consensus       204 -----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t-------~--g~s~~di~~l~~~A  260 (343)
                           .++|++.+||...+.        +..|++.++..... .++..+..+++..       .  .-+++.++++++.|
T Consensus       155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a  234 (261)
T TIGR02881       155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA  234 (261)
T ss_pred             hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence                 367899999976665        77888888775432 2222244443321       1  12678888899988


Q ss_pred             HHHHHHHHHH
Q psy7809         261 ILIAAREVIQ  270 (343)
Q Consensus       261 ~~~a~~r~~~  270 (343)
                      ......|.+.
T Consensus       235 ~~~~~~r~~~  244 (261)
T TIGR02881       235 IRRQAVRLLD  244 (261)
T ss_pred             HHHHHHHHhc
Confidence            8888777765

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>CHL00181 cbbX CbbX; Provisional

Probab=99.86  E-value=6.3e-21  Score=173.14  Aligned_cols=206  Identities=21%  Similarity=0.270  Sum_probs=148.2

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHh-ccC---CCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcCCc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFK-GIL---RPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLPSS  124 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~---~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~~~  124 (343)
                      ++++|++++|+++.+++.+... +.+.. .+.   .++.+++|+||||||||++|+++|..+.       .+++++++.+
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~~-~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~  101 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLLI-DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD  101 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence            4799999999999998866332 23322 222   2345699999999999999999998762       3689999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC-
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW-  203 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~-  203 (343)
                      +.+.+.|.+......+|..+.   ++||||||+|.+................|+..|+...     .+++||++++... 
T Consensus       102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-----~~~~vI~ag~~~~~  173 (287)
T CHL00181        102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-----DDLVVIFAGYKDRM  173 (287)
T ss_pred             HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-----CCEEEEEeCCcHHH
Confidence            988888887777777777653   4799999999997644444456778888888887542     3577777765422 


Q ss_pred             ----CCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHH----Hc--cCC-CHHHHHHHHHHHHHH
Q psy7809         204 ----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSK----QL--IGY-SGSDIRDLCQEIILI  263 (343)
Q Consensus       204 ----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~----~t--~g~-s~~di~~l~~~A~~~  263 (343)
                          .++|++.+||+..+.        +..|+..++...... .+.....+..    ..  ..| +++++++++++|...
T Consensus       174 ~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~  253 (287)
T CHL00181        174 DKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR  253 (287)
T ss_pred             HHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence                346999999988776        778888887764221 1222223333    22  334 389999999999999


Q ss_pred             HHHHHHH
Q psy7809         264 AAREVIQ  270 (343)
Q Consensus       264 a~~r~~~  270 (343)
                      ...|...
T Consensus       254 ~~~r~~~  260 (287)
T CHL00181        254 QANRIFE  260 (287)
T ss_pred             HHHHHHc
Confidence            8888876

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.86  E-value=2.5e-21  Score=155.80  Aligned_cols=125  Identities=42%  Similarity=0.652  Sum_probs=111.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCC--Cchh
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARA-PAVIFIDEVDAFCSGS--REHE  168 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~--~~~~  168 (343)
                      +||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....+..+|..+.... |+||+|||+|.+....  ....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~   80 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS   80 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence            689999999999999999999999999999999998888999999999999999887 9999999999998754  4455


Q ss_pred             hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHh-ccccCcch
Q psy7809         169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALK-RRFEKRIS  218 (343)
Q Consensus       169 ~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~-~rf~~~i~  218 (343)
                      ....+...|+..++.....  ..+++||+|||.++.+++.++ +||+.++.
T Consensus        81 ~~~~~~~~L~~~l~~~~~~--~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~  129 (132)
T PF00004_consen   81 FEQRLLNQLLSLLDNPSSK--NSRVIVIATTNSPDKIDPALLRSRFDRRIE  129 (132)
T ss_dssp             HHHHHHHHHHHHHHTTTTT--SSSEEEEEEESSGGGSCHHHHSTTSEEEEE
T ss_pred             ccccccceeeecccccccc--cccceeEEeeCChhhCCHhHHhCCCcEEEE
Confidence            6678888999999877553  347999999999999999999 89987763

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.85  E-value=2.4e-20  Score=169.45  Aligned_cols=205  Identities=21%  Similarity=0.259  Sum_probs=149.0

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHh-ccC---CCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcCCcc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFK-GIL---RPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLPSSL  125 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~-~~~---~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~~~l  125 (343)
                      +++|++++|+++.+++.+.. .+.... .+.   .+..+++|+||||||||++|+++|..+.       .+++.+++.++
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l  101 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL  101 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence            68999999999999887643 333322 222   2445899999999999999999988763       36999999898


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC--C
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP--W  203 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~--~  203 (343)
                      ...+.|.....+..+|..+.   +++|||||+|.+.....+......+...|+..|+...     .+++||++++..  +
T Consensus       102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-----~~~~vI~a~~~~~~~  173 (284)
T TIGR02880       102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-----DDLVVILAGYKDRMD  173 (284)
T ss_pred             hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-----CCEEEEEeCCcHHHH
Confidence            88888887777778887763   3899999999996543344456677888888887432     367777776543  2


Q ss_pred             ---CCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHc------cCC-CHHHHHHHHHHHHHHH
Q psy7809         204 ---DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQL------IGY-SGSDIRDLCQEIILIA  264 (343)
Q Consensus       204 ---~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t------~g~-s~~di~~l~~~A~~~a  264 (343)
                         .+++++.+||...+.        +..|++.++.+.... ....+..++...      +.+ +++++++++++|....
T Consensus       174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~  253 (284)
T TIGR02880       174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ  253 (284)
T ss_pred             HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence               247999999987776        777888888775321 222233444432      122 6899999999999888


Q ss_pred             HHHHHH
Q psy7809         265 AREVIQ  270 (343)
Q Consensus       265 ~~r~~~  270 (343)
                      ..|...
T Consensus       254 ~~r~~~  259 (284)
T TIGR02880       254 ANRLFC  259 (284)
T ss_pred             HHHHhc
Confidence            888875

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG0742|consensus

Probab=99.83  E-value=5.2e-20  Score=167.13  Aligned_cols=201  Identities=24%  Similarity=0.422  Sum_probs=149.6

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      ....+..|++++-...+.+.|..+...-....    ....+.+++|||||||||||++|+.+|...|..+-.+...++.-
T Consensus       347 s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP  422 (630)
T KOG0742|consen  347 SSRGKDPLEGVILHPSLEKRIEDLAIATANTK----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP  422 (630)
T ss_pred             hhcCCCCcCCeecCHHHHHHHHHHHHHhcccc----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc
Confidence            34455668999999999998887765321110    01256689999999999999999999999999988888777654


Q ss_pred             ccccchHHHHHHHHHHHHHcCCc-EEEEcccccccCCCCc---hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         128 KHYGESEKLVRALFETARARAPA-VIFIDEVDAFCSGSRE---HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a~~~~p~-il~iDeid~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      .. ......++.+|+.++....+ +|||||+|.++-..+.   ++..+..++.|+---   .  .....++++.+||+|.
T Consensus       423 lG-~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT---G--dqSrdivLvlAtNrpg  496 (630)
T KOG0742|consen  423 LG-AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT---G--DQSRDIVLVLATNRPG  496 (630)
T ss_pred             cc-hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh---c--ccccceEEEeccCCcc
Confidence            32 23456799999999876644 8899999998764333   344455555554322   1  1234799999999999


Q ss_pred             CCCHHHhccccCcch--------HHHHHhhhhcCCCC---------------------------CCcccHHHHHHHccCC
Q psy7809         204 DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK---------------------------DPNVDVATLSKQLIGY  248 (343)
Q Consensus       204 ~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~---------------------------~~~~~~~~la~~t~g~  248 (343)
                      ++|.++-+|++..++        |..++..|+.++..                           ..+.-+.+.|..|+||
T Consensus       497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf  576 (630)
T KOG0742|consen  497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF  576 (630)
T ss_pred             chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence            999999999999887        88898888876421                           0122377899999999


Q ss_pred             CHHHHHHHHH
Q psy7809         249 SGSDIRDLCQ  258 (343)
Q Consensus       249 s~~di~~l~~  258 (343)
                      ||++|..|+-
T Consensus       577 SGREiakLva  586 (630)
T KOG0742|consen  577 SGREIAKLVA  586 (630)
T ss_pred             cHHHHHHHHH
Confidence            9999998864

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.83  E-value=1.8e-19  Score=154.02  Aligned_cols=188  Identities=19%  Similarity=0.271  Sum_probs=116.5

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      ....+.+|+|++||++++..+.-++......       .....++|||||||+||||||+.+|++++.++..++...+..
T Consensus        16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k   88 (233)
T PF05496_consen   16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK   88 (233)
T ss_dssp             HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred             HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence            3455779999999999999988766532211       134568999999999999999999999999999887754322


Q ss_pred             ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC-----CC--------CCCCEE
Q psy7809         128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT-----GS--------GDKGVL  194 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~--------~~~~v~  194 (343)
                        .+    .+..++....  ...||||||||.+         .+.....|+..|+...-     ..        +-.++.
T Consensus        89 --~~----dl~~il~~l~--~~~ILFIDEIHRl---------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT  151 (233)
T PF05496_consen   89 --AG----DLAAILTNLK--EGDILFIDEIHRL---------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT  151 (233)
T ss_dssp             --CH----HHHHHHHT----TT-EEEECTCCC-----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred             --HH----HHHHHHHhcC--CCcEEEEechhhc---------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence              12    2333333332  3479999999988         34556667777664321     11        013588


Q ss_pred             EEEecCCCCCCCHHHhccccCcch-----HHHHHhhh---hcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         195 VLAATNHPWDLDEALKRRFEKRIS-----PIQIIGLC---LGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~rf~~~i~-----r~~il~~~---~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      +|++|++...|.+++++||.....     ..++.++.   ....... .+....++|.++.| +|+--..+++++
T Consensus       152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv  225 (233)
T PF05496_consen  152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV  225 (233)
T ss_dssp             EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred             EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence            999999999999999999987543     44444433   3333322 33446789999988 677665665543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG0744|consensus

Probab=99.81  E-value=1e-19  Score=160.85  Aligned_cols=200  Identities=29%  Similarity=0.395  Sum_probs=148.7

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHH--HhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---------CceEEEcCC
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQL--FKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------STFFNVLPS  123 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~--~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------~~~~~v~~~  123 (343)
                      |+.++=-..+|+.|..+....+.-.+.  -...+...+-+||+||||||||+|++++|+.+.         ..++++++.
T Consensus       141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh  220 (423)
T KOG0744|consen  141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH  220 (423)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence            456666678899888877654332221  112345556799999999999999999999874         468899999


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCC---c--EEEEcccccccC------CCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAP---A--VIFIDEVDAFCS------GSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p---~--il~iDeid~l~~------~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      .+.+++++++.+.+..+|+......-   +  .++|||++.|+.      .+.+....-++.++++.++|++....   +
T Consensus       221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~---N  297 (423)
T KOG0744|consen  221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP---N  297 (423)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC---C
Confidence            99999999999999999988865431   2  677999999975      24444566799999999999987654   8


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC------------------CcccHHHHHHH-c
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD------------------PNVDVATLSKQ-L  245 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~------------------~~~~~~~la~~-t  245 (343)
                      |++++|+|-.+.+|.++.+|-+.+.+        +.+|++.++.+....                  .+.....++.. +
T Consensus       298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~  377 (423)
T KOG0744|consen  298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST  377 (423)
T ss_pred             EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence            99999999999999999998777665        777777776653100                  11122334433 3


Q ss_pred             cCCCHHHHHHHH
Q psy7809         246 IGYSGSDIRDLC  257 (343)
Q Consensus       246 ~g~s~~di~~l~  257 (343)
                      .|.||+-|+.|=
T Consensus       378 ~gLSGRtlrkLP  389 (423)
T KOG0744|consen  378 VGLSGRTLRKLP  389 (423)
T ss_pred             cCCccchHhhhh
Confidence            788998888753

>KOG0743|consensus

Probab=99.80  E-value=1.1e-18  Score=161.44  Aligned_cols=198  Identities=20%  Similarity=0.286  Sum_probs=147.7

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccC-CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGIL-RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      +.-.++.+|+.++-..++|+.|.+-+..+.....++.... ..-+|.|||||||||||+++.|+|++++..++.+...+.
T Consensus       192 v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v  271 (457)
T KOG0743|consen  192 VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV  271 (457)
T ss_pred             cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc
Confidence            3445568899999889999999999988888888877653 444799999999999999999999999999999977665


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC---CCc----h--hhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG---SRE----H--EATRRVRCELLSHMDGVGTGSGDKGVLVL  196 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~---~~~----~--~~~~~~~~~ll~~l~~~~~~~~~~~v~vI  196 (343)
                      ...     .. ++.++..+..  .+||+|+|||.-+.-   ...    .  ....-.+.-||+.+|++.+... .-.+||
T Consensus       272 ~~n-----~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIiv  342 (457)
T KOG0743|consen  272 KLD-----SD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIV  342 (457)
T ss_pred             cCc-----HH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEE
Confidence            433     12 6666654433  379999999987641   111    0  1233567789999999988763 457899


Q ss_pred             EecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCC--CHHHHHH
Q psy7809         197 AATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGY--SGSDIRD  255 (343)
Q Consensus       197 ~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~--s~~di~~  255 (343)
                      .|||.++.|||+|+|  |++..|+        -+.+...++....  +..-++++.+..++-  ||+|+..
T Consensus       343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e  411 (457)
T KOG0743|consen  343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE  411 (457)
T ss_pred             EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence            999999999999999  9999998        4444444443321  244466676666654  8999864

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.79  E-value=2.4e-18  Score=175.43  Aligned_cols=250  Identities=18%  Similarity=0.212  Sum_probs=174.9

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----  113 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----  113 (343)
                      +.+.+..++.....+-.+++++|+++....+.+.+..            ....+++|+||||||||++|+.+|.++    
T Consensus       164 ~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~  231 (731)
T TIGR02639       164 ALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGK  231 (731)
T ss_pred             HHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            4444555666666778899999999999988877754            234689999999999999999999987    


Q ss_pred             ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809         114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG  185 (343)
Q Consensus       114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~  185 (343)
                            +.+++.+++..+.  ..+.|+.+..++.+|+.+.+..++||||||+|.|++.+...+......+.|...+.   
T Consensus       232 ~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---  308 (731)
T TIGR02639       232 VPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---  308 (731)
T ss_pred             CchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---
Confidence                  6789999988887  46788999999999999988888999999999998743222222223444444443   


Q ss_pred             CCCCCCCEEEEEecCCC-----CCCCHHHhccccCcch--------HHHHHhhhhcCC----C-CCCcccHHHHHHHccC
Q psy7809         186 TGSGDKGVLVLAATNHP-----WDLDEALKRRFEKRIS--------PIQIIGLCLGEI----R-KDPNVDVATLSKQLIG  247 (343)
Q Consensus       186 ~~~~~~~v~vI~ttn~~-----~~l~~~l~~rf~~~i~--------r~~il~~~~~~~----~-~~~~~~~~~la~~t~g  247 (343)
                          .+.+.+|++|+..     ...|+++.|||.. +.        +..|++......    . ...+..+..++..+..
T Consensus       309 ----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r  383 (731)
T TIGR02639       309 ----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR  383 (731)
T ss_pred             ----CCCeEEEEecCHHHHHHHhhhhHHHHHhCce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence                2368899999863     3579999999974 43        777777655442    1 2355567778888877


Q ss_pred             CCHHH-----HHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         248 YSGSD-----IRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       248 ~s~~d-----i~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                      |-+..     --+++++|+.....+..                                 ......|+.+|+..++....
T Consensus       384 yi~~r~~P~kai~lld~a~a~~~~~~~---------------------------------~~~~~~v~~~~i~~~i~~~t  430 (731)
T TIGR02639       384 YINDRFLPDKAIDVIDEAGASFRLRPK---------------------------------AKKKANVSVKDIENVVAKMA  430 (731)
T ss_pred             ccccccCCHHHHHHHHHhhhhhhcCcc---------------------------------cccccccCHHHHHHHHHHHh
Confidence            74332     23555555443221100                                 00123499999999999885


Q ss_pred             --C--CCCHHHHHHHHHHHHHh
Q psy7809         323 --K--SVDGALIRKYKRWNELY  340 (343)
Q Consensus       323 --p--~~~~~~~~~~~~~~~~~  340 (343)
                        |  .+++++...+....+.+
T Consensus       431 giP~~~~~~~~~~~l~~l~~~l  452 (731)
T TIGR02639       431 HIPVKTVSVDDREKLKNLEKNL  452 (731)
T ss_pred             CCChhhhhhHHHHHHHHHHHHH
Confidence              3  35667777776665544

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.78  E-value=1e-17  Score=165.21  Aligned_cols=186  Identities=22%  Similarity=0.215  Sum_probs=129.6

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++++.+|++|+|++.+++.|...+...           +.++.+||+||+|+|||++++.+|+.+++.         
T Consensus         6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG   74 (830)
T PRK07003          6 LARKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG   74 (830)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence            457889999999999999999999887642           344568999999999999999999998652         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     +++++..+      ......++.++..+..    ....|+||||+|.|         .....+.|
T Consensus        75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L---------T~~A~NAL  139 (830)
T PRK07003         75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML---------TNHAFNAM  139 (830)
T ss_pred             ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC---------CHHHHHHH
Confidence                           22222211      1112334555554432    23469999999988         23457788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~t~g~s  249 (343)
                      ++.|+..     ..++.||++||+++.|.+.|+||+...-.    ..+|   |+..+....+ .++..+..|++.+.| +
T Consensus       140 LKtLEEP-----P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s  213 (830)
T PRK07003        140 LKTLEEP-----PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S  213 (830)
T ss_pred             HHHHHhc-----CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            8988765     34789999999999999999997643333    2233   3333332222 245567789999988 5


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIILI  263 (343)
Q Consensus       250 ~~di~~l~~~A~~~  263 (343)
                      .++..++++.++.+
T Consensus       214 mRdALsLLdQAia~  227 (830)
T PRK07003        214 MRDALSLTDQAIAY  227 (830)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777776654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.78  E-value=4.2e-18  Score=161.97  Aligned_cols=186  Identities=18%  Similarity=0.186  Sum_probs=128.6

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------  116 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------  116 (343)
                      .+.+++.+.+|++++|++.+...|...+...           ..+..+||+||+|||||++|+.+|+.+++.        
T Consensus         7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC   75 (484)
T PRK14956          7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC   75 (484)
T ss_pred             hhHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence            3557889999999999999999998887643           334568999999999999999999998763        


Q ss_pred             ----------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                      +++++...      ......++.+...+.    .....|+||||+|.|         .....+.
T Consensus        76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L---------s~~A~NA  140 (484)
T PRK14956         76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML---------TDQSFNA  140 (484)
T ss_pred             CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc---------CHHHHHH
Confidence                            22222211      011223444433332    234569999999988         3356788


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----H---HHHHhhhhcCCC-CCCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----P---IQIIGLCLGEIR-KDPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r---~~il~~~~~~~~-~~~~~~~~~la~~t~g~  248 (343)
                      |++.++..     +..+++|++|+.++.+.+++++|+.....    .   ...++..+.... ..++..+..||+.++| 
T Consensus       141 LLKtLEEP-----p~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-  214 (484)
T PRK14956        141 LLKTLEEP-----PAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-  214 (484)
T ss_pred             HHHHhhcC-----CCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            88888753     45789999999999999999998653322    2   223333333322 2245567889999988 


Q ss_pred             CHHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEIIL  262 (343)
Q Consensus       249 s~~di~~l~~~A~~  262 (343)
                      +.+|..++++.++.
T Consensus       215 d~RdAL~lLeq~i~  228 (484)
T PRK14956        215 SVRDMLSFMEQAIV  228 (484)
T ss_pred             hHHHHHHHHHHHHH
Confidence            57777777776653

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.78  E-value=1.6e-17  Score=144.99  Aligned_cols=230  Identities=19%  Similarity=0.217  Sum_probs=158.2

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      .-.+..|++++|++++|++|.-++.....+.       ...-++|||||||.||||||..+|++++..+...+.+-+...
T Consensus        19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~   91 (332)
T COG2255          19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP   91 (332)
T ss_pred             ccCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence            3457889999999999999998887543322       455789999999999999999999999999888776655422


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC--------CCC-----CCCCEEE
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG--------TGS-----GDKGVLV  195 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~-----~~~~v~v  195 (343)
                        +    .+..++.....  .+||||||||.+.+         .+-..|...|+.+.        ...     .-.++.+
T Consensus        92 --g----DlaaiLt~Le~--~DVLFIDEIHrl~~---------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL  154 (332)
T COG2255          92 --G----DLAAILTNLEE--GDVLFIDEIHRLSP---------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL  154 (332)
T ss_pred             --h----hHHHHHhcCCc--CCeEEEehhhhcCh---------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence              2    23333333322  37999999999943         33334444554321        110     1236889


Q ss_pred             EEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809         196 LAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       196 I~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~  266 (343)
                      ||+|.+...|...+++||.....        ...|+.+....+... .+....++|+++.| +|+=-..|+++..-.|..
T Consensus       155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V  233 (332)
T COG2255         155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQV  233 (332)
T ss_pred             eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHH
Confidence            99999999999999999976654        556666655554333 34456789999999 666555666665555543


Q ss_pred             HHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHh
Q psy7809         267 EVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR---KSVDGALIRKYKRWNELY  340 (343)
Q Consensus       267 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~---p~~~~~~~~~~~~~~~~~  340 (343)
                      +...                                     .|+.+--.+|++...   .-..+-+.+.+.-..+.|
T Consensus       234 ~~~~-------------------------------------~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f  273 (332)
T COG2255         234 KGDG-------------------------------------DIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQF  273 (332)
T ss_pred             hcCC-------------------------------------cccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHh
Confidence            3211                                     277777777877775   335666777777777777

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.78  E-value=3.3e-18  Score=166.56  Aligned_cols=186  Identities=22%  Similarity=0.244  Sum_probs=129.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------  116 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------  116 (343)
                      .+.+++++.+|++|+|++.+++.|...+...           +.++.+||+||+|+|||++|+.+|+.+++.        
T Consensus         5 vLarKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~   73 (700)
T PRK12323          5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI   73 (700)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence            3457889999999999999999999888643           345678999999999999999999998762        


Q ss_pred             ---------------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhH
Q psy7809         117 ---------------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATR  171 (343)
Q Consensus       117 ---------------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~  171 (343)
                                           +++++..+      ......++.+.+.+.    .....|+||||+|.|         ..
T Consensus        74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L---------s~  138 (700)
T PRK12323         74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML---------TN  138 (700)
T ss_pred             CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc---------CH
Confidence                                 22222211      111233444444432    234569999999988         33


Q ss_pred             HHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh---hhcCCCC-CCcccHHHHHH
Q psy7809         172 RVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL---CLGEIRK-DPNVDVATLSK  243 (343)
Q Consensus       172 ~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~---~~~~~~~-~~~~~~~~la~  243 (343)
                      ...+.|++.|+..     ..+++||++|+.++.|.+.|+||+...-.    ..++.++   .+..... .++..++.|++
T Consensus       139 ~AaNALLKTLEEP-----P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~  213 (700)
T PRK12323        139 HAFNAMLKTLEEP-----PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ  213 (700)
T ss_pred             HHHHHHHHhhccC-----CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            5678899998854     44789999999999999999997654433    3333322   2222222 23344678888


Q ss_pred             HccCCCHHHHHHHHHHHHH
Q psy7809         244 QLIGYSGSDIRDLCQEIIL  262 (343)
Q Consensus       244 ~t~g~s~~di~~l~~~A~~  262 (343)
                      .+.| +.++..++++.++.
T Consensus       214 ~A~G-s~RdALsLLdQaia  231 (700)
T PRK12323        214 AAQG-SMRDALSLTDQAIA  231 (700)
T ss_pred             HcCC-CHHHHHHHHHHHHH
Confidence            9888 68888787776554

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.78  E-value=2.7e-17  Score=153.06  Aligned_cols=194  Identities=21%  Similarity=0.216  Sum_probs=131.1

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      .+..+..|++++|+++.++.+...+.....       ...++.+++|+||||||||++|+++|++++..+..++...+..
T Consensus        17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~   89 (328)
T PRK00080         17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK   89 (328)
T ss_pred             hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence            345677899999999999999887753211       1145678999999999999999999999998887766543321


Q ss_pred             ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC------CC-------CCCCCEE
Q psy7809         128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG------TG-------SGDKGVL  194 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~------~~-------~~~~~v~  194 (343)
                            ...+..++...  ..++||||||+|.+...         ....+...++...      ..       ....++.
T Consensus        90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~---------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~  152 (328)
T PRK00080         90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPV---------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT  152 (328)
T ss_pred             ------hHHHHHHHHhc--ccCCEEEEecHhhcchH---------HHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence                  12233444332  34689999999988421         1112223332211      00       0012478


Q ss_pred             EEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         195 VLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      +|++|+.+..+++.+++||...+.        +.++++........ .++..++.|++.+.|. ++.+..+++++...+.
T Consensus       153 li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~~a~  231 (328)
T PRK00080        153 LIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRDFAQ  231 (328)
T ss_pred             EEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHHHHH
Confidence            899999999999999999865543        66777766655432 2444578999999884 6878788887666655


Q ss_pred             H
Q psy7809         266 R  266 (343)
Q Consensus       266 ~  266 (343)
                      .
T Consensus       232 ~  232 (328)
T PRK00080        232 V  232 (328)
T ss_pred             H
Confidence            3

>KOG2004|consensus

Probab=99.76  E-value=2.1e-17  Score=159.29  Aligned_cols=198  Identities=21%  Similarity=0.237  Sum_probs=147.1

Q ss_pred             CCCCCCCCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCC
Q psy7809          18 KGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILR   87 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~   87 (343)
                      +..+-+.+..+.++-..+.++.+.+..-.+.+.....|          +|..|++++|+++.+++........      .
T Consensus       363 El~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs------~  436 (906)
T KOG2004|consen  363 ELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGS------V  436 (906)
T ss_pred             HHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhccc------C
Confidence            44555667778888888999999998777766665555          5789999999999999976543322      3


Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc---------cccccchHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT---------SKHYGESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      .+.-+.|+||||+|||+++++||+.+++.|+.++...+.         ..|+|.+...+-+.++.+....| +++|||+|
T Consensus       437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvD  515 (906)
T KOG2004|consen  437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVD  515 (906)
T ss_pred             CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhh
Confidence            445688999999999999999999999999999876554         34788888888888888888776 88899999


Q ss_pred             cccCCCCchhhhHHHHHHHhhhcc---------cCCCCC-CCCCEEEEEecCCCCCCCHHHhccccCcch-------HHH
Q psy7809         159 AFCSGSREHEATRRVRCELLSHMD---------GVGTGS-GDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQ  221 (343)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~-~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~  221 (343)
                      ++..+.++...+     +|++.||         .+-... .-++|++|||+|..+.++++|++|++..-.       ...
T Consensus       516 KlG~g~qGDPas-----ALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~  590 (906)
T KOG2004|consen  516 KLGSGHQGDPAS-----ALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVK  590 (906)
T ss_pred             hhCCCCCCChHH-----HHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHH
Confidence            998543333332     4555554         111111 134899999999999999999999765432       445


Q ss_pred             HHhhhh
Q psy7809         222 IIGLCL  227 (343)
Q Consensus       222 il~~~~  227 (343)
                      |.+.|+
T Consensus       591 IA~~yL  596 (906)
T KOG2004|consen  591 IAERYL  596 (906)
T ss_pred             HHHHhh
Confidence            555544

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.75  E-value=3.6e-17  Score=150.82  Aligned_cols=187  Identities=20%  Similarity=0.244  Sum_probs=123.7

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccch
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES  133 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~  133 (343)
                      +|++++|++++++.|..++......       ...+.+++|+||||||||++|+++|++++..+..+....+..  .   
T Consensus         2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~---   69 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P---   69 (305)
T ss_pred             CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c---
Confidence            6899999999999999887532111       134568999999999999999999999998877665433221  1   


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-------------CCCCCEEEEEecC
Q psy7809         134 EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-------------SGDKGVLVLAATN  200 (343)
Q Consensus       134 ~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-------------~~~~~v~vI~ttn  200 (343)
                       ..+...+...  ..+.+|||||+|.+..         .....|...++.....             ....++.+|++|+
T Consensus        70 -~~l~~~l~~~--~~~~vl~iDEi~~l~~---------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~  137 (305)
T TIGR00635        70 -GDLAAILTNL--EEGDVLFIDEIHRLSP---------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT  137 (305)
T ss_pred             -hhHHHHHHhc--ccCCEEEEehHhhhCH---------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence             1122222222  3457999999998843         1222333333322100             0122478999999


Q ss_pred             CCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       201 ~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      .+..+++++++||...+.        ..++++........ .++..++.+++.+.|+ ++.+..++..+...|.
T Consensus       138 ~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~  210 (305)
T TIGR00635       138 RAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQ  210 (305)
T ss_pred             CccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHH
Confidence            999999999999965543        56666665554322 2445578899999885 5777777776655443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=9.5e-17  Score=156.86  Aligned_cols=185  Identities=19%  Similarity=0.212  Sum_probs=127.9

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++++.+|++|+|++.+++.|...+...           ..+..+||+||+|+|||++|+++|+.+++.         
T Consensus         5 LarKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg   73 (702)
T PRK14960          5 LARKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE   73 (702)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence            457788999999999999999999888632           345678999999999999999999998752         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     ++.++..+-      .....++.+...+.    .....|+||||+|.|.         ....+.|
T Consensus        74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS---------~~A~NAL  138 (702)
T PRK14960         74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS---------THSFNAL  138 (702)
T ss_pred             cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC---------HHHHHHH
Confidence                           333333211      11233455544432    2235699999999882         3456788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HH---HHHhhhhcCC-CCCCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PI---QIIGLCLGEI-RKDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~---~il~~~~~~~-~~~~~~~~~~la~~t~g~s  249 (343)
                      ++.++..     +..+.+|++|+.+..+.+.+++|+...-.    ..   ..++..+... ....+..+..||+.+.| +
T Consensus       139 LKtLEEP-----P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d  212 (702)
T PRK14960        139 LKTLEEP-----PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S  212 (702)
T ss_pred             HHHHhcC-----CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            8888754     34678888888899999999887643322    22   2333333332 22345557889999877 7


Q ss_pred             HHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIIL  262 (343)
Q Consensus       250 ~~di~~l~~~A~~  262 (343)
                      .+++.+++..++.
T Consensus       213 LRdALnLLDQaIa  225 (702)
T PRK14960        213 LRDALSLTDQAIA  225 (702)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888776654

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=1.1e-16  Score=160.60  Aligned_cols=192  Identities=20%  Similarity=0.186  Sum_probs=127.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE-E----
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF-N----  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~-~----  119 (343)
                      .+.+++++.+|++|+|++.+++.|...+...           +.+..+||+||+|||||++|+++|+.+++.-. .    
T Consensus         5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC   73 (944)
T PRK14949          5 VLARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC   73 (944)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence            3456788999999999999999999887642           33456799999999999999999999876411 0    


Q ss_pred             EcC---Ccccccc------c----cchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         120 VLP---SSLTSKH------Y----GESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       120 v~~---~~l~~~~------~----~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                      -.|   ..+....      +    ......++.+...+.    .....|+||||+|.|         ....++.|++.|+
T Consensus        74 g~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L---------T~eAqNALLKtLE  144 (944)
T PRK14949         74 GVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML---------SRSSFNALLKTLE  144 (944)
T ss_pred             CCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc---------CHHHHHHHHHHHh
Confidence            000   0000000      0    011223444443332    223469999999988         4567889999998


Q ss_pred             cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCC-CCCcccHHHHHHHccCCCHHHHH
Q psy7809         183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIR  254 (343)
Q Consensus       183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~  254 (343)
                      ..     +..+.+|++|+.+..|.+.|++|+...-.    ..++   |+..+.... ...+..+..|+..+.| +.+++.
T Consensus       145 EP-----P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~AL  218 (944)
T PRK14949        145 EP-----PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDAL  218 (944)
T ss_pred             cc-----CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence            64     44678888899999999999987533222    2222   233232221 2244457889999988 688888


Q ss_pred             HHHHHHHH
Q psy7809         255 DLCQEIIL  262 (343)
Q Consensus       255 ~l~~~A~~  262 (343)
                      +++..|+.
T Consensus       219 nLLdQala  226 (944)
T PRK14949        219 SLTDQAIA  226 (944)
T ss_pred             HHHHHHHH
Confidence            88887663

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=2e-17  Score=161.11  Aligned_cols=187  Identities=21%  Similarity=0.191  Sum_probs=129.3

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------  116 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------  116 (343)
                      .+.+++++.+|++|+|++.+++.|...+...           ..+..+||+||+|+|||++|+.+|+.+++.        
T Consensus         5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC   73 (509)
T PRK14958          5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC   73 (509)
T ss_pred             hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence            3457889999999999999999999888643           345568999999999999999999998653        


Q ss_pred             ----------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                      +++++..+      ......++.+...+..    ....|+||||+|.|.         ....+.
T Consensus        74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls---------~~a~na  138 (509)
T PRK14958         74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS---------GHSFNA  138 (509)
T ss_pred             CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC---------HHHHHH
Confidence                            34443321      1122234555444322    234699999999883         345778


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~t~g~  248 (343)
                      |++.|+..     +..+.+|++|++++.+.+.+++|+...-.    ..++   ++..+..... .++..+..+++.+.| 
T Consensus       139 LLk~LEep-----p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-  212 (509)
T PRK14958        139 LLKTLEEP-----PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-  212 (509)
T ss_pred             HHHHHhcc-----CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            89988864     44678888888899999899997533222    2222   2333333322 244557789999877 


Q ss_pred             CHHHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEIILI  263 (343)
Q Consensus       249 s~~di~~l~~~A~~~  263 (343)
                      +.+++.++++.++.+
T Consensus       213 slR~al~lLdq~ia~  227 (509)
T PRK14958        213 SVRDALSLLDQSIAY  227 (509)
T ss_pred             cHHHHHHHHHHHHhc
Confidence            788888888776543

>TIGR00763 lon ATP-dependent protease La

Probab=99.74  E-value=4.1e-17  Score=167.25  Aligned_cols=233  Identities=20%  Similarity=0.187  Sum_probs=148.6

Q ss_pred             CCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEE
Q psy7809          24 GVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGIL   93 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vl   93 (343)
                      ..+...++......+.+.+..-.+.+.....+          ++++|++++++.+.+++........      ..+.+++
T Consensus       278 ~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~------~~~~~ll  351 (775)
T TIGR00763       278 LLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK------MKGPILC  351 (775)
T ss_pred             cCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC------CCCceEE
Confidence            34445555555556656555433333332222          3589999999999998765422111      2334799


Q ss_pred             EEcCCCchHHHHHHHHHHHhCCceEEEcCCccc---------cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC
Q psy7809          94 LFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT---------SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS  164 (343)
Q Consensus        94 l~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~  164 (343)
                      |+||||||||++|+++|+.++.+++.+++..+.         ..|.|.....+...|..+....| ||+|||||.+....
T Consensus       352 l~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~  430 (775)
T TIGR00763       352 LVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF  430 (775)
T ss_pred             EECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc
Confidence            999999999999999999999999999765432         23455555556667776655555 89999999997532


Q ss_pred             CchhhhHHHHHHHhhhccc-----CC----C-CCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhh
Q psy7809         165 REHEATRRVRCELLSHMDG-----VG----T-GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLC  226 (343)
Q Consensus       165 ~~~~~~~~~~~~ll~~l~~-----~~----~-~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~  226 (343)
                      +..     ..+.|++.++.     +.    . .-..+++++|+|||..+.+++++++||. .+.        +..|++.+
T Consensus       431 ~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~  504 (775)
T TIGR00763       431 RGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKY  504 (775)
T ss_pred             CCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHH
Confidence            221     23455555542     10    0 0012478999999999999999999985 333        66777665


Q ss_pred             hc-----CCCC------CCcccHHHHHH-HccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         227 LG-----EIRK------DPNVDVATLSK-QLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       227 ~~-----~~~~------~~~~~~~~la~-~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      +.     ...+      .++..+..|++ .+..+..++|+..+++.+..+.++..
T Consensus       505 l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~  559 (775)
T TIGR00763       505 LIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLV  559 (775)
T ss_pred             HHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHH
Confidence            52     1111      12233444544 33344567888877777776666654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.74  E-value=2.4e-16  Score=155.83  Aligned_cols=186  Identities=22%  Similarity=0.212  Sum_probs=127.7

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|++|+|++.+++.|...+...           ..+..+||+||+|+|||++|+.+|+.+++.         
T Consensus         6 La~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg   74 (647)
T PRK07994          6 LARKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG   74 (647)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence            346788899999999999999999888642           334567999999999999999999998763         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     +++++..+      ......++.+...+.    .....|+||||+|.|         .....+.|
T Consensus        75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L---------s~~a~NAL  139 (647)
T PRK07994         75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML---------SRHSFNAL  139 (647)
T ss_pred             CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC---------CHHHHHHH
Confidence                           22222211      011223444443332    234569999999988         34678899


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHH---hhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQII---GLCLGEIR-KDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il---~~~~~~~~-~~~~~~~~~la~~t~g~s  249 (343)
                      ++.|+..     +..+.+|++|++++.|.+.++||+...-.    ..+|.   ...+.... ..++..+..|+..+.| +
T Consensus       140 LKtLEEP-----p~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s  213 (647)
T PRK07994        140 LKTLEEP-----PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S  213 (647)
T ss_pred             HHHHHcC-----CCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            9999854     44788888899999999999997533222    33333   33232222 2344557789999888 6


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIILI  263 (343)
Q Consensus       250 ~~di~~l~~~A~~~  263 (343)
                      .++...+++.|+..
T Consensus       214 ~R~Al~lldqaia~  227 (647)
T PRK07994        214 MRDALSLTDQAIAS  227 (647)
T ss_pred             HHHHHHHHHHHHHh
Confidence            78888888766543

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.74  E-value=4.5e-17  Score=157.07  Aligned_cols=182  Identities=17%  Similarity=0.192  Sum_probs=120.7

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC----------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS----------  115 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~----------  115 (343)
                      +.+++++.+|++++|++.+++.|...+...           ..+.++||+||||||||++|+++|+.+++          
T Consensus         4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~   72 (472)
T PRK14962          4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN   72 (472)
T ss_pred             hHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence            456788999999999999999998877643           34567899999999999999999998865          


Q ss_pred             --------------ceEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         116 --------------TFFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       116 --------------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                    .++.++...      ......++.+...+..    ....||||||+|.+.         ...++.|
T Consensus        73 ~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt---------~~a~~~L  137 (472)
T PRK14962         73 ECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT---------KEAFNAL  137 (472)
T ss_pred             ccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH---------HHHHHHH
Confidence                          233443321      1112234444444332    234699999999883         2345677


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s  249 (343)
                      +..++..     +..+++|++|+.+..+++++++|+...-.       ...+++..+.... ..++..++.|+..+.| +
T Consensus       138 Lk~LE~p-----~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d  211 (472)
T PRK14962        138 LKTLEEP-----PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G  211 (472)
T ss_pred             HHHHHhC-----CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence            8887753     33677787777888999999998753222       3334444443322 2344557788888866 4


Q ss_pred             HHHHHHHHHH
Q psy7809         250 GSDIRDLCQE  259 (343)
Q Consensus       250 ~~di~~l~~~  259 (343)
                      .+++.+.++.
T Consensus       212 lR~aln~Le~  221 (472)
T PRK14962        212 LRDALTMLEQ  221 (472)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.73  E-value=9.1e-17  Score=146.58  Aligned_cols=167  Identities=22%  Similarity=0.363  Sum_probs=113.2

Q ss_pred             cccCCCCCCCcccccHHHHH---HHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQ---IFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~---~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      ...-.+.++++++||+.+.-   -|.+.+..            ....+++|||||||||||||+.||...+.+|..++..
T Consensus        15 A~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv   82 (436)
T COG2256          15 AERLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV   82 (436)
T ss_pred             HHHhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence            34455788999999998873   34444432            3456899999999999999999999999999999863


Q ss_pred             ccccccccchHHHHHHHHHHHHHcC----CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         124 SLTSKHYGESEKLVRALFETARARA----PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~----p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      .       ...+-++.+++.++...    ..||||||||.+-.         .-+..|+-.++       ...+++||+|
T Consensus        83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK---------~QQD~lLp~vE-------~G~iilIGAT  139 (436)
T COG2256          83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK---------AQQDALLPHVE-------NGTIILIGAT  139 (436)
T ss_pred             c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh---------hhhhhhhhhhc-------CCeEEEEecc
Confidence            3       23455788888885433    47999999998833         33446777775       3467777655


Q ss_pred             -CCC-CCCCHHHhccccCcch-------HHHHHhhhhcC-C-CCC------CcccHHHHHHHccCC
Q psy7809         200 -NHP-WDLDEALKRRFEKRIS-------PIQIIGLCLGE-I-RKD------PNVDVATLSKQLIGY  248 (343)
Q Consensus       200 -n~~-~~l~~~l~~rf~~~i~-------r~~il~~~~~~-~-~~~------~~~~~~~la~~t~g~  248 (343)
                       .+| -.++++|+||......       -..++...+.. . .+.      ++...+.|+..+.|-
T Consensus       140 TENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD  205 (436)
T COG2256         140 TENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD  205 (436)
T ss_pred             CCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence             445 4799999998654443       33333332211 1 221      233456777777774

>KOG0989|consensus

Probab=99.73  E-value=3.4e-16  Score=138.02  Aligned_cols=176  Identities=22%  Similarity=0.269  Sum_probs=120.9

Q ss_pred             hccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc------
Q psy7809          43 EKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST------  116 (343)
Q Consensus        43 ~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------  116 (343)
                      .+.+.+++.+.+|++++|++.+.+.|...+..            ....++|||||||||||+.|+++|+++..+      
T Consensus        23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r   90 (346)
T KOG0989|consen   23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR   90 (346)
T ss_pred             ccchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence            35678999999999999999999999988864            233579999999999999999999998762      


Q ss_pred             eEEEcCCccccccccchHHHHHHHHHHHHHc---------CC-cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         117 FFNVLPSSLTSKHYGESEKLVRALFETARAR---------AP-AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~---------~p-~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                      +.+.+.++..+..+...  ++. -|......         .| .|++|||.|.|         ....+++|.+.|+.+  
T Consensus        91 vl~lnaSderGisvvr~--Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm---------tsdaq~aLrr~mE~~--  156 (346)
T KOG0989|consen   91 VLELNASDERGISVVRE--KIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM---------TSDAQAALRRTMEDF--  156 (346)
T ss_pred             hhhhcccccccccchhh--hhc-CHHHHhhccccccCCCCCcceEEEEechhhh---------hHHHHHHHHHHHhcc--
Confidence            33334444443332211  111 12222111         12 59999999988         446788999999875  


Q ss_pred             CCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCCC-CcccHHHHHHHccC
Q psy7809         187 GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRKD-PNVDVATLSKQLIG  247 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~~-~~~~~~~la~~t~g  247 (343)
                         ...+++|..||.++.|...+.+|+.+..+       -...|+.......+. ++..++.|+..++|
T Consensus       157 ---s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G  222 (346)
T KOG0989|consen  157 ---SRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG  222 (346)
T ss_pred             ---ccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence               33689999999999999999997766554       223333333333222 33346677777766

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.72  E-value=1.1e-16  Score=155.05  Aligned_cols=194  Identities=16%  Similarity=0.192  Sum_probs=131.7

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE-----
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN-----  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~-----  119 (343)
                      .+.+++.+.+|+|++|++.+.+.|...+...           +.+.++||+||+|||||++|+++|+.+++....     
T Consensus        10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~   78 (507)
T PRK06645         10 PFARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT   78 (507)
T ss_pred             chhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence            4567889999999999999999998866532           345789999999999999999999998653110     


Q ss_pred             -------EcCCccccc----------cccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809         120 -------VLPSSLTSK----------HYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELL  178 (343)
Q Consensus       120 -------v~~~~l~~~----------~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll  178 (343)
                             -+|..+...          ........++.++..+...    ...|+||||+|.+.         ...++.|+
T Consensus        79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls---------~~a~naLL  149 (507)
T PRK06645         79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS---------KGAFNALL  149 (507)
T ss_pred             cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC---------HHHHHHHH
Confidence                   011111100          0011234566666665432    34699999999882         34577888


Q ss_pred             hhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCH
Q psy7809         179 SHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSG  250 (343)
Q Consensus       179 ~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~  250 (343)
                      +.++..     +..+++|++|+.++.+.+.+++|+...-.       ...+++..+..... .++..+..|++.+.| +.
T Consensus       150 k~LEep-----p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl  223 (507)
T PRK06645        150 KTLEEP-----PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA  223 (507)
T ss_pred             HHHhhc-----CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence            888743     34678888888888999999987542211       33444444444332 244557889999987 78


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         251 SDIRDLCQEIILIA  264 (343)
Q Consensus       251 ~di~~l~~~A~~~a  264 (343)
                      +++.++++.++.++
T Consensus       224 R~al~~Ldkai~~~  237 (507)
T PRK06645        224 RDAVSILDQAASMS  237 (507)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888888876553

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.72  E-value=1.2e-16  Score=150.43  Aligned_cols=184  Identities=18%  Similarity=0.187  Sum_probs=124.0

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce--------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF--------  117 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~--------  117 (343)
                      +.+++.+.+|++++|++.+++.+...+...           ..++.+||+||+|+|||++|+++|+.+.+..        
T Consensus         6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~   74 (363)
T PRK14961          6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR   74 (363)
T ss_pred             HHHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            456788999999999999999999877542           3456789999999999999999999986421        


Q ss_pred             ----------------EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         118 ----------------FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       118 ----------------~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                      +.+++..      ......++.+...+..    ....|++|||+|.+.         ....+.|
T Consensus        75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~---------~~a~naL  139 (363)
T PRK14961         75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS---------RHSFNAL  139 (363)
T ss_pred             CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC---------HHHHHHH
Confidence                            1121110      0122335555554432    123599999999882         2456678


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s  249 (343)
                      ++.++..     +..+.+|++|+.++.+.+++.+|+...-.       ...+++..+..... .++..+..++..+.| +
T Consensus       140 Lk~lEe~-----~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~  213 (363)
T PRK14961        140 LKTLEEP-----PQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S  213 (363)
T ss_pred             HHHHhcC-----CCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            8888754     33667787888888899999987633221       23344444433322 344567788888877 6


Q ss_pred             HHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEII  261 (343)
Q Consensus       250 ~~di~~l~~~A~  261 (343)
                      .+++.++++.++
T Consensus       214 ~R~al~~l~~~~  225 (363)
T PRK14961        214 MRDALNLLEHAI  225 (363)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777654

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=2.2e-16  Score=151.83  Aligned_cols=185  Identities=17%  Similarity=0.178  Sum_probs=130.2

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----------
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----------  115 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----------  115 (343)
                      .+++.+.+|+|++|++.+++.|...+...           +.+.++||+||+|+|||++|+.+|+.+++           
T Consensus         4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~   72 (491)
T PRK14964          4 ALKYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT   72 (491)
T ss_pred             hHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence            46788999999999999999998877543           45678999999999999999999987643           


Q ss_pred             -------------ceEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809         116 -------------TFFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELL  178 (343)
Q Consensus       116 -------------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll  178 (343)
                                   .+++++..+-      .....++.+...+..    ....|+||||+|.|.         ....+.|+
T Consensus        73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls---------~~A~NaLL  137 (491)
T PRK14964         73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS---------NSAFNALL  137 (491)
T ss_pred             cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC---------HHHHHHHH
Confidence                         2344444321      122345555555532    234699999998882         34677889


Q ss_pred             hhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCH
Q psy7809         179 SHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSG  250 (343)
Q Consensus       179 ~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~  250 (343)
                      +.++..     +..+.+|++|+.+..+.+.+++|+...-.       ....+...+.... ..++..+..|++.+.| +.
T Consensus       138 K~LEeP-----p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl  211 (491)
T PRK14964        138 KTLEEP-----APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM  211 (491)
T ss_pred             HHHhCC-----CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence            998854     44678888888888899999997644322       2333333333332 2345567889999977 78


Q ss_pred             HHHHHHHHHHHHH
Q psy7809         251 SDIRDLCQEIILI  263 (343)
Q Consensus       251 ~di~~l~~~A~~~  263 (343)
                      +++.++++.++.+
T Consensus       212 R~alslLdqli~y  224 (491)
T PRK14964        212 RNALFLLEQAAIY  224 (491)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888777654

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=2.5e-16  Score=155.31  Aligned_cols=186  Identities=19%  Similarity=0.232  Sum_probs=127.3

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|++|+|++.+++.|...+...           ..+..+||+||+|+|||++|+.+|+.+++.         
T Consensus         6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~   74 (618)
T PRK14951          6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT   74 (618)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence            457889999999999999999999988643           344568999999999999999999998652         


Q ss_pred             --------------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHH
Q psy7809         117 --------------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRR  172 (343)
Q Consensus       117 --------------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~  172 (343)
                                          +++++..+      ......++.+...+..    ....|++|||+|.|         +..
T Consensus        75 ~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L---------s~~  139 (618)
T PRK14951         75 ATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML---------TNT  139 (618)
T ss_pred             CCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC---------CHH
Confidence                                22222111      1112345555554432    12359999999988         334


Q ss_pred             HHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHH
Q psy7809         173 VRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQ  244 (343)
Q Consensus       173 ~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~  244 (343)
                      ..+.|++.++..     +..+.+|++|++++.+.+.+++|+...-.    ..++   ++..+....+ .++..+..|++.
T Consensus       140 a~NaLLKtLEEP-----P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~  214 (618)
T PRK14951        140 AFNAMLKTLEEP-----PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA  214 (618)
T ss_pred             HHHHHHHhcccC-----CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            577888888754     44678888888899999899997543222    3333   3333333222 234557889998


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q psy7809         245 LIGYSGSDIRDLCQEIILI  263 (343)
Q Consensus       245 t~g~s~~di~~l~~~A~~~  263 (343)
                      +.| +.+++.++++.++..
T Consensus       215 s~G-slR~al~lLdq~ia~  232 (618)
T PRK14951        215 ARG-SMRDALSLTDQAIAF  232 (618)
T ss_pred             cCC-CHHHHHHHHHHHHHh
Confidence            887 788888887766544

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.71  E-value=3.4e-16  Score=154.20  Aligned_cols=187  Identities=20%  Similarity=0.233  Sum_probs=130.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce-------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-------  117 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-------  117 (343)
                      .+.+++++.+|++|+|++.+++.|...+...           +.+.++||+||+|+|||++|+.+|+.+++.-       
T Consensus         5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC   73 (709)
T PRK08691          5 VLARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC   73 (709)
T ss_pred             hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence            3457889999999999999999999988643           4456899999999999999999999886531       


Q ss_pred             -----------------EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         118 -----------------FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       118 -----------------~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                       ++++...      ......++.++..+..    ....||||||+|.|         .....+.
T Consensus        74 g~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L---------s~~A~NA  138 (709)
T PRK08691         74 GVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML---------SKSAFNA  138 (709)
T ss_pred             cccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc---------CHHHHHH
Confidence                             1111111      1123345666654422    23469999999987         2345678


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~  248 (343)
                      |++.|+..     ...+.+|++|+++..+.+.+++|+...-.    ..+   .+...+....+ .++..+..|++.+.| 
T Consensus       139 LLKtLEEP-----p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-  212 (709)
T PRK08691        139 MLKTLEEP-----PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-  212 (709)
T ss_pred             HHHHHHhC-----CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-
Confidence            88888754     34678888889999999999997643321    222   33333333322 244457889999977 


Q ss_pred             CHHHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEIILI  263 (343)
Q Consensus       249 s~~di~~l~~~A~~~  263 (343)
                      +.+++.++++.++.+
T Consensus       213 slRdAlnLLDqaia~  227 (709)
T PRK08691        213 SMRDALSLLDQAIAL  227 (709)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            788888888877654

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.70  E-value=2.1e-16  Score=155.29  Aligned_cols=201  Identities=19%  Similarity=0.248  Sum_probs=129.4

Q ss_pred             hccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---------
Q psy7809          43 EKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---------  113 (343)
Q Consensus        43 ~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------  113 (343)
                      ..++.+++++.+|++++|++..++.+...+..            ..+.++||+||||||||++|+++...+         
T Consensus        52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~  119 (531)
T TIGR02902        52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK  119 (531)
T ss_pred             cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC
Confidence            45677888999999999999999998865432            345689999999999999999997643         


Q ss_pred             -CCceEEEcCCccc--cc-----cccchHHHH---HHHHH----------HHHHcCCcEEEEcccccccCCCCchhhhHH
Q psy7809         114 -GSTFFNVLPSSLT--SK-----HYGESEKLV---RALFE----------TARARAPAVIFIDEVDAFCSGSREHEATRR  172 (343)
Q Consensus       114 -~~~~~~v~~~~l~--~~-----~~~~~~~~i---~~~~~----------~a~~~~p~il~iDeid~l~~~~~~~~~~~~  172 (343)
                       +.+|+.++|....  ..     ..+.....+   ...|.          .......++|||||+|.|.         ..
T Consensus       120 ~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~---------~~  190 (531)
T TIGR02902       120 EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH---------PV  190 (531)
T ss_pred             CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC---------HH
Confidence             3578999886321  10     000000000   00000          0111234799999999883         34


Q ss_pred             HHHHHhhhcccC--------CC----------------CCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHH
Q psy7809         173 VRCELLSHMDGV--------GT----------------GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQ  221 (343)
Q Consensus       173 ~~~~ll~~l~~~--------~~----------------~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~  221 (343)
                      .++.|+..|+.-        ..                ..+.+..+|++|++.++.+++++++|+.....       ...
T Consensus       191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~  270 (531)
T TIGR02902       191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKE  270 (531)
T ss_pred             HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHH
Confidence            455566555421        00                00112245667778899999999998754433       667


Q ss_pred             HHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809         222 IIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       222 il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~  266 (343)
                      |++..+++... .++..++.|+..+.  +++++.++++.|...|..
T Consensus       271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~  314 (531)
T TIGR02902       271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALG  314 (531)
T ss_pred             HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh
Confidence            77777765532 23444666776663  789999999998877653

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.8e-16  Score=153.63  Aligned_cols=184  Identities=23%  Similarity=0.248  Sum_probs=136.7

Q ss_pred             CCCCCCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCCCC
Q psy7809          20 KPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPW   89 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~   89 (343)
                      ++-+....++++.+.-+.+.+.+..-.|.......+          .|..|++++|+++.+++........      ..+
T Consensus       277 ~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~------~kG  350 (782)
T COG0466         277 KKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK------LKG  350 (782)
T ss_pred             HHHhcCCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc------CCC
Confidence            333445567777777788888777666666555444          4789999999999999976543322      233


Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc---------cccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT---------SKHYGESEKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      .-++|+||||+|||+|++.||+.++..|+.++...+.         ..|+|.+...+-+-...+....| +++|||||++
T Consensus       351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm  429 (782)
T COG0466         351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKM  429 (782)
T ss_pred             cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhc
Confidence            5688999999999999999999999999999876554         34788888888788888888776 8899999999


Q ss_pred             cCCCCchhhhHHHHHHHhhhcc---------cCCCCC-CCCCEEEEEecCCCCCCCHHHhccccC
Q psy7809         161 CSGSREHEATRRVRCELLSHMD---------GVGTGS-GDKGVLVLAATNHPWDLDEALKRRFEK  215 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~-~~~~v~vI~ttn~~~~l~~~l~~rf~~  215 (343)
                      ...-.+...+     +|++.||         .+-... .-+.|+||+|+|..+.++.+|++|++.
T Consensus       430 ~ss~rGDPaS-----ALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEi  489 (782)
T COG0466         430 GSSFRGDPAS-----ALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEV  489 (782)
T ss_pred             cCCCCCChHH-----HHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceee
Confidence            8754433333     5666655         111111 134899999999999999999998764

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.69  E-value=6.9e-16  Score=156.02  Aligned_cols=206  Identities=22%  Similarity=0.251  Sum_probs=143.8

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----  113 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----  113 (343)
                      ..+.....+...-..-.++.++|.+...+.+.+.+..            ....++||+||||||||++|+.+|...    
T Consensus       168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~  235 (758)
T PRK11034        168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGD  235 (758)
T ss_pred             HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            4455555555555566788999999999988887754            234678999999999999999999864    


Q ss_pred             ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809         114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG  185 (343)
Q Consensus       114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~  185 (343)
                            +..++.++...+.  ..+.|+.+..++.++..+....++||||||+|.|++.+........+.+.|...+.   
T Consensus       236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~---  312 (758)
T PRK11034        236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---  312 (758)
T ss_pred             CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh---
Confidence                  4556666655555  35677888889999998888888999999999998754322222233333433332   


Q ss_pred             CCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcCCCCCCccc-----HHHHHHHccC
Q psy7809         186 TGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKDPNVD-----VATLSKQLIG  247 (343)
Q Consensus       186 ~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~~~~~-----~~~la~~t~g  247 (343)
                          ...+.+|++|+.++     ..|+++.|||+. |.        +..||+.+...+....++.     +...+..+..
T Consensus       313 ----~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~-I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r  387 (758)
T PRK11034        313 ----SGKIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK  387 (758)
T ss_pred             ----CCCeEEEecCChHHHHHHhhccHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence                23789999999764     579999999974 44        7788887766553333333     3444444544


Q ss_pred             C-----CHHHHHHHHHHHHHH
Q psy7809         248 Y-----SGSDIRDLCQEIILI  263 (343)
Q Consensus       248 ~-----s~~di~~l~~~A~~~  263 (343)
                      |     -|....++++.|+..
T Consensus       388 yi~~r~lPdKaidlldea~a~  408 (758)
T PRK11034        388 YINDRHLPDKAIDVIDEAGAR  408 (758)
T ss_pred             cccCccChHHHHHHHHHHHHh
Confidence            4     455677888877764

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.68  E-value=7.7e-16  Score=150.85  Aligned_cols=186  Identities=20%  Similarity=0.244  Sum_probs=126.4

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|++|+|++.+++.|...+...           ..++.+||+||+|+|||++|+.+|+.+++.         
T Consensus         6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg   74 (527)
T PRK14969          6 LARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG   74 (527)
T ss_pred             HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            446788899999999999999999888643           344568999999999999999999998653         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     +++++...      ......++.+...+..    ....|+||||+|.|.         ....+.|
T Consensus        75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls---------~~a~naL  139 (527)
T PRK14969         75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS---------KSAFNAM  139 (527)
T ss_pred             CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC---------HHHHHHH
Confidence                           12221110      1123345666655532    224599999999883         3457788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHh---hhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIG---LCLGEIRK-DPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~---~~~~~~~~-~~~~~~~~la~~t~g~s  249 (343)
                      ++.++..     +..+++|++|++++.+.+.+++|+...-.    ..+|..   ..+..... .++..+..|+..+.| +
T Consensus       140 LK~LEep-----p~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-s  213 (527)
T PRK14969        140 LKTLEEP-----PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-S  213 (527)
T ss_pred             HHHHhCC-----CCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            9988764     34678888888888888888886533222    333332   22222222 234456788888877 6


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIILI  263 (343)
Q Consensus       250 ~~di~~l~~~A~~~  263 (343)
                      .+++.++++.|+..
T Consensus       214 lr~al~lldqai~~  227 (527)
T PRK14969        214 MRDALSLLDQAIAY  227 (527)
T ss_pred             HHHHHHHHHHHHHh
Confidence            78888888776643

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.67  E-value=2.4e-16  Score=151.11  Aligned_cols=194  Identities=19%  Similarity=0.206  Sum_probs=137.2

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce-EE----
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-FN----  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-~~----  119 (343)
                      .+-+++++..|+|++|++.+.+.|...+..-           +-..+.||.||.|+|||++||.+|+.+++.- ..    
T Consensus         5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC   73 (515)
T COG2812           5 VLARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPC   73 (515)
T ss_pred             HHHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcc
Confidence            3457899999999999999999999988754           3446789999999999999999999987642 10    


Q ss_pred             ---EcCCccccc-cc---------cchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         120 ---VLPSSLTSK-HY---------GESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       120 ---v~~~~l~~~-~~---------~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                         ..|.++... ++         ...-+.++.+.+.+..    ..+.|++|||+|.|         +....+.|++.++
T Consensus        74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML---------S~~afNALLKTLE  144 (515)
T COG2812          74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML---------SKQAFNALLKTLE  144 (515)
T ss_pred             hhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh---------hHHHHHHHhcccc
Confidence               011111111 00         1112335555554432    33569999999877         6688999999998


Q ss_pred             cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHh---hhhcCCC-CCCcccHHHHHHHccCCCHHHHH
Q psy7809         183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIG---LCLGEIR-KDPNVDVATLSKQLIGYSGSDIR  254 (343)
Q Consensus       183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~---~~~~~~~-~~~~~~~~~la~~t~g~s~~di~  254 (343)
                      .-     +..|++|.+|..++.+++.++||+.+.-.    ...|..   ..+.... ...+..+..+|+.++| |.+|..
T Consensus       145 EP-----P~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal  218 (515)
T COG2812         145 EP-----PSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL  218 (515)
T ss_pred             cC-----ccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence            44     67899999999999999999997654433    333322   2222222 2344557789999988 789999


Q ss_pred             HHHHHHHHHH
Q psy7809         255 DLCQEIILIA  264 (343)
Q Consensus       255 ~l~~~A~~~a  264 (343)
                      .+++.|....
T Consensus       219 slLDq~i~~~  228 (515)
T COG2812         219 SLLDQAIAFG  228 (515)
T ss_pred             HHHHHHHHcc
Confidence            9999888774

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=1e-15  Score=155.93  Aligned_cols=184  Identities=17%  Similarity=0.141  Sum_probs=122.9

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|++|+|++.+++.|...+...           +.++.+||+||+|||||++|+.||+.+.+.         
T Consensus         5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg   73 (824)
T PRK07764          5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG   73 (824)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence            457899999999999999999999888642           344568999999999999999999998652         


Q ss_pred             -----------------eEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchhhhHHHHH
Q psy7809         117 -----------------FFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHEATRRVRC  175 (343)
Q Consensus       117 -----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~  175 (343)
                                       +++++....      .....++.+...+    ......|+||||+|.|         .....+
T Consensus        74 ~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l---------t~~a~N  138 (824)
T PRK07764         74 ECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV---------TPQGFN  138 (824)
T ss_pred             ccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc---------CHHHHH
Confidence                             122221110      0122233332222    2334569999999998         335677


Q ss_pred             HHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HH---HHHhhhhcCCCC-CCcccHHHHHHHccC
Q psy7809         176 ELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PI---QIIGLCLGEIRK-DPNVDVATLSKQLIG  247 (343)
Q Consensus       176 ~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~---~il~~~~~~~~~-~~~~~~~~la~~t~g  247 (343)
                      .|++.|+..     ...++||++|+.++.|.+.|++|+...-+    ..   .+|...+....+ ..+..+..|+..+.|
T Consensus       139 aLLK~LEEp-----P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG  213 (824)
T PRK07764        139 ALLKIVEEP-----PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG  213 (824)
T ss_pred             HHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            899999865     34678888888888899999997543322    22   233443333322 234446677778766


Q ss_pred             CCHHHHHHHHHHHH
Q psy7809         248 YSGSDIRDLCQEII  261 (343)
Q Consensus       248 ~s~~di~~l~~~A~  261 (343)
                       +.+++.+++++.+
T Consensus       214 -dlR~Al~eLEKLi  226 (824)
T PRK07764        214 -SVRDSLSVLDQLL  226 (824)
T ss_pred             -CHHHHHHHHHHHH
Confidence             6677666666544

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.67  E-value=2e-15  Score=144.65  Aligned_cols=179  Identities=22%  Similarity=0.333  Sum_probs=117.0

Q ss_pred             cccCCCCCCCcccccHHHHHH---HHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQI---FKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      .++.++.+|++++|++++...   |...+..            ....+++|+||||||||++|+++|+.++..++.+++.
T Consensus         3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~   70 (413)
T PRK13342          3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV   70 (413)
T ss_pred             hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence            456778899999999998666   7776643            2345899999999999999999999999999998875


Q ss_pred             ccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         124 SLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ...       ...++.++..+.    .....||||||+|.+.         ......|+..++.       ..+++|++|
T Consensus        71 ~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~---------~~~q~~LL~~le~-------~~iilI~at  127 (413)
T PRK13342         71 TSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN---------KAQQDALLPHVED-------GTITLIGAT  127 (413)
T ss_pred             ccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC---------HHHHHHHHHHhhc-------CcEEEEEeC
Confidence            321       223444444442    2245799999999883         2334566666652       246666654


Q ss_pred             C-C-CCCCCHHHhccccCcch-------HHHHHhhhhcCC--C--CCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         200 N-H-PWDLDEALKRRFEKRIS-------PIQIIGLCLGEI--R--KDPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       200 n-~-~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~--~--~~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      + . ...+++++++|+.....       ...+++..+...  .  ...+..+..+++.+.| ..+.+.++++.+.
T Consensus       128 t~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~  201 (413)
T PRK13342        128 TENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA  201 (413)
T ss_pred             CCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            3 3 34788999998733222       334444443321  1  1233446677887755 4566666666553

>PLN03025 replication factor C subunit; Provisional

Probab=99.67  E-value=2.8e-15  Score=138.89  Aligned_cols=181  Identities=18%  Similarity=0.141  Sum_probs=116.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~  119 (343)
                      ++.+++.+.+|++++|++++++.|..++...            ...++||+||||||||++|+++|+++..     .+++
T Consensus         2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e   69 (319)
T PLN03025          2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE   69 (319)
T ss_pred             ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence            3678899999999999999999998876532            2346999999999999999999999732     3555


Q ss_pred             EcCCccccccccchHHHHHHHHHHH-HH------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETA-RA------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a-~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      ++.++..+.      ..++...... ..      ..+.|++|||+|.+..         ...+.|+..++.+.     ..
T Consensus        70 ln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------~aq~aL~~~lE~~~-----~~  129 (319)
T PLN03025         70 LNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------GAQQALRRTMEIYS-----NT  129 (319)
T ss_pred             ecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------HHHHHHHHHHhccc-----CC
Confidence            555443221      1233322211 11      2356999999999832         33556677776442     24


Q ss_pred             EEEEEecCCCCCCCHHHhccccCc-ch------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKR-IS------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQ  258 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~-i~------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~  258 (343)
                      ..+|.++|..+.+.+++++|+... +.      ....++..+.... ..++..+..++..+.| ..+.+.+.++
T Consensus       130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq  202 (319)
T PLN03025        130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ  202 (319)
T ss_pred             ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence            557778888888989999976422 11      3334444443322 2244557778877765 3444444444

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.67  E-value=1.7e-15  Score=148.91  Aligned_cols=185  Identities=16%  Similarity=0.148  Sum_probs=123.7

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST----------  116 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----------  116 (343)
                      .+++.+.+|++|+|++.+++.|...+...           ..++.+||+||+|||||++|+++|+.+.+.          
T Consensus         4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~   72 (584)
T PRK14952          4 YRKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV   72 (584)
T ss_pred             HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence            46788999999999999999999988642           344568999999999999999999988642          


Q ss_pred             ----------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                      +++++....      .....++.+...+.    .....|+||||+|.|-         ....+.
T Consensus        73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt---------~~A~NA  137 (584)
T PRK14952         73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT---------TAGFNA  137 (584)
T ss_pred             cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC---------HHHHHH
Confidence                            222221110      01223444433332    2234699999999883         346778


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~  248 (343)
                      |++.|+..     +..+++|++|+.++.+.+.+++|+...-.    ..+   .+...+..... .++..+..++..+.| 
T Consensus       138 LLK~LEEp-----p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-  211 (584)
T PRK14952        138 LLKIVEEP-----PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-  211 (584)
T ss_pred             HHHHHhcC-----CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            89999864     44788888888889999999987432221    222   33333333322 234456677787766 


Q ss_pred             CHHHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEIILI  263 (343)
Q Consensus       249 s~~di~~l~~~A~~~  263 (343)
                      +.+++.++++.++..
T Consensus       212 dlR~aln~Ldql~~~  226 (584)
T PRK14952        212 SPRDTLSVLDQLLAG  226 (584)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            677777777765443

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.67  E-value=1.7e-15  Score=142.92  Aligned_cols=180  Identities=18%  Similarity=0.191  Sum_probs=119.4

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce----------------
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF----------------  117 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~----------------  117 (343)
                      .|++|+|++.+++.|...+.........+  ....++++||+||+|+|||++|+++|+.+.+.-                
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~   80 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL   80 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence            58999999999999999998653221111  113567899999999999999999999875531                


Q ss_pred             -------EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         118 -------FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       118 -------~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                             +.+.+..     .......++.++..+..    ....|+||||+|.+.         ....+.|++.|+..  
T Consensus        81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~---------~~aanaLLk~LEep--  144 (394)
T PRK07940         81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT---------ERAANALLKAVEEP--  144 (394)
T ss_pred             cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC---------HHHHHHHHHHhhcC--
Confidence                   1222111     01123346667666643    234599999999993         23457888888754  


Q ss_pred             CCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH
Q psy7809         187 GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD  255 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~  255 (343)
                         +.++++|.+|++++.+.++++||+...-.    ..++...+.+.... +...+..++..+.|..+..+.-
T Consensus       145 ---~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-~~~~a~~la~~s~G~~~~A~~l  213 (394)
T PRK07940        145 ---PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-DPETARRAARASQGHIGRARRL  213 (394)
T ss_pred             ---CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence               33556666667799999999998753333    55555554433332 3455678899999976655543

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.67  E-value=1.9e-15  Score=147.34  Aligned_cols=186  Identities=16%  Similarity=0.201  Sum_probs=123.9

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++++.+|++++|++.+++.|...+...           ..+..+||+||+|+|||++|+.+|+.+.+.         
T Consensus         6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg   74 (546)
T PRK14957          6 LARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN   74 (546)
T ss_pred             HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence            456788899999999999999999877642           344568999999999999999999988641         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     +++++...-      .....++.+...+..    ....|+||||+|.+         .....+.|
T Consensus        75 ~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l---------s~~a~naL  139 (546)
T PRK14957         75 KCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML---------SKQSFNAL  139 (546)
T ss_pred             ccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc---------cHHHHHHH
Confidence                           222221110      111223444443322    23469999999988         33567788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIR-KDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~-~~~~~~~~~la~~t~g~s  249 (343)
                      ++.|+..     +..+.+|++|+++..+.+.+++|+...-.    ..+|   ++..+.... ..++..+..|+..+.| +
T Consensus       140 LK~LEep-----p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d  213 (546)
T PRK14957        140 LKTLEEP-----PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S  213 (546)
T ss_pred             HHHHhcC-----CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            9988854     34677777778888888889887633222    2222   333333322 2345557788888876 6


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIILI  263 (343)
Q Consensus       250 ~~di~~l~~~A~~~  263 (343)
                      .+++.++++.++..
T Consensus       214 lR~alnlLek~i~~  227 (546)
T PRK14957        214 LRDALSLLDQAISF  227 (546)
T ss_pred             HHHHHHHHHHHHHh
Confidence            78777777766543

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=7.2e-15  Score=144.23  Aligned_cols=211  Identities=40%  Similarity=0.606  Sum_probs=177.6

Q ss_pred             cChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEc
Q psy7809          77 LMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFID  155 (343)
Q Consensus        77 ~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iD  155 (343)
                      .++..+.. +..++.+++++||||+|||.++++++.+ +..+..++......++.+.....+..+|..+....|+++++|
T Consensus         5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d   83 (494)
T COG0464           5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID   83 (494)
T ss_pred             cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence            34444443 3588899999999999999999999999 766688888999999999999999999999999999999999


Q ss_pred             ccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHH
Q psy7809         156 EVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQII  223 (343)
Q Consensus       156 eid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il  223 (343)
                      ++|.+.+...  .......+...++..+++..  . .. +++++.+|.+..+++++++  ||+..+.        +.+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~-~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~  159 (494)
T COG0464          84 EIDALAPKRSSDQGEVERRVVAQLLALMDGLK--R-GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL  159 (494)
T ss_pred             hhhhcccCccccccchhhHHHHHHHHhccccc--C-Cc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence            9999998533  34566788999999999887  2 44 8889999999999999998  8887776        77888


Q ss_pred             hhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCC
Q psy7809         224 GLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLG  303 (343)
Q Consensus       224 ~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (343)
                      ...........+.++..++..+.||++.++..++..+...+.++...                               ..
T Consensus       160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-------------------------------~~  208 (494)
T COG0464         160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-------------------------------LV  208 (494)
T ss_pred             HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc-------------------------------cC
Confidence            88887777667899999999999999999999999999999988631                               01


Q ss_pred             CCcccccHHHHHHHHHhcCC
Q psy7809         304 SDRIVLNRSHFERAKEKCRK  323 (343)
Q Consensus       304 ~~~~~lt~~df~~Al~~~~p  323 (343)
                      ...+.++.+||.++++.+.|
T Consensus       209 ~~~~~~~~~~~~~~l~~~~~  228 (494)
T COG0464         209 GEYIGVTEDDFEEALKKVLP  228 (494)
T ss_pred             cccccccHHHHHHHHHhcCc
Confidence            12234899999999999865

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.66  E-value=7.8e-15  Score=145.98  Aligned_cols=191  Identities=20%  Similarity=0.235  Sum_probs=127.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE---c
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV---L  121 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v---~  121 (343)
                      .+.+++++.+|++|+|++.+++.|...+...           ..++.+||+||+|+|||++|+++|+.+.+.-...   .
T Consensus         7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p   75 (725)
T PRK07133          7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP   75 (725)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence            3457889999999999999999999888643           3456789999999999999999999886531100   0


Q ss_pred             CC----------cccc-cccc-chHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809         122 PS----------SLTS-KHYG-ESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG  185 (343)
Q Consensus       122 ~~----------~l~~-~~~~-~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~  185 (343)
                      |.          ++.. ...+ .....++.+...+..    ....|++|||+|.|.         ....+.|++.|+.. 
T Consensus        76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT---------~~A~NALLKtLEEP-  145 (725)
T PRK07133         76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS---------KSAFNALLKTLEEP-  145 (725)
T ss_pred             hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC---------HHHHHHHHHHhhcC-
Confidence            10          0000 0000 123346666655543    234699999999883         24677889988854 


Q ss_pred             CCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHH
Q psy7809         186 TGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLC  257 (343)
Q Consensus       186 ~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~  257 (343)
                          +..+++|++|+.++.|.+.+++|+...-.    ..++   ++..+..... ..+..+..+|..+.| +.+++..++
T Consensus       146 ----P~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL  220 (725)
T PRK07133        146 ----PKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA  220 (725)
T ss_pred             ----CCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence                44678888888999999999998753322    2232   2322222222 233447788888877 677777777


Q ss_pred             HHHH
Q psy7809         258 QEII  261 (343)
Q Consensus       258 ~~A~  261 (343)
                      +.+.
T Consensus       221 ekl~  224 (725)
T PRK07133        221 EQVS  224 (725)
T ss_pred             HHHH
Confidence            6654

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.66  E-value=2.8e-15  Score=146.42  Aligned_cols=185  Identities=17%  Similarity=0.191  Sum_probs=124.6

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------  116 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------  116 (343)
                      .+.+++++.+|++++|++.+++.|...+...           ..++++||+||+|+|||++|+++|+.+.+.        
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C   73 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC   73 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence            4567889999999999999999999877532           345679999999999999999999988541        


Q ss_pred             ----------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                      ++.++...      ......++.+...+..    ....|++|||+|.|-         ....+.
T Consensus        74 g~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt---------~~A~Na  138 (605)
T PRK05896         74 NSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS---------TSAWNA  138 (605)
T ss_pred             cccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC---------HHHHHH
Confidence                            22222211      0112235555544432    224599999999882         235678


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCC-CCCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIR-KDPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~-~~~~~~~~~la~~t~g~  248 (343)
                      |+..|+..     +..+++|++|+.+..+.+++++|+...-.    ..+   .++..+.... ..++..+..++..+.| 
T Consensus       139 LLKtLEEP-----p~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-  212 (605)
T PRK05896        139 LLKTLEEP-----PKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-  212 (605)
T ss_pred             HHHHHHhC-----CCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            88888754     34678888888899999999997654322    222   3333332322 1234457788888877 


Q ss_pred             CHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEII  261 (343)
Q Consensus       249 s~~di~~l~~~A~  261 (343)
                      +.+++.++++.+.
T Consensus       213 dlR~AlnlLekL~  225 (605)
T PRK05896        213 SLRDGLSILDQLS  225 (605)
T ss_pred             cHHHHHHHHHHHH
Confidence            6777767666543

>PRK04195 replication factor C large subunit; Provisional

Probab=99.65  E-value=2.4e-15  Score=146.83  Aligned_cols=186  Identities=19%  Similarity=0.270  Sum_probs=123.9

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+++++.+.+|++++|++.+++.|..++....       .+ .++.++||+||||||||++|+++|++++.+++++++++
T Consensus         3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~-------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd   74 (482)
T PRK04195          3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWL-------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD   74 (482)
T ss_pred             CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence            35788999999999999999999999885432       11 34678999999999999999999999999999998876


Q ss_pred             cccccccchHHHHHHHHHHHHH------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         125 LTSKHYGESEKLVRALFETARA------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ....      ..+..+...+..      ..+.||+|||+|.+....     .......|+..++..       +..+|++
T Consensus        75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-----d~~~~~aL~~~l~~~-------~~~iIli  136 (482)
T PRK04195         75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-----DRGGARAILELIKKA-------KQPIILT  136 (482)
T ss_pred             cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-----chhHHHHHHHHHHcC-------CCCEEEe
Confidence            4421      223333333322      246799999999985421     112344566665521       3457778


Q ss_pred             cCCCCCCCH-HHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         199 TNHPWDLDE-ALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       199 tn~~~~l~~-~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      +|.+..+.. .+++|+...-.       ...+++..+..... .++..++.|++.+.|    |++.+++..
T Consensus       137 ~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L  203 (482)
T PRK04195        137 ANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL  203 (482)
T ss_pred             ccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence            898888876 67665332211       44455555544322 234557778877654    666555443

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=3e-15  Score=146.87  Aligned_cols=183  Identities=20%  Similarity=0.202  Sum_probs=120.5

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------  116 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------  116 (343)
                      .+.+++.+.+|++|+|++.+++.|...+...           +-+.++||+||+|+|||++|+.+|+.+.+.        
T Consensus         5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC   73 (624)
T PRK14959          5 SLTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC   73 (624)
T ss_pred             hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence            4567889999999999999999999888642           234689999999999999999999998753        


Q ss_pred             ----------------eEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                      +++++...      ......++.+...+    ......||||||+|.|.         ....+.
T Consensus        74 g~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt---------~~a~na  138 (624)
T PRK14959         74 NTCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT---------REAFNA  138 (624)
T ss_pred             cccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC---------HHHHHH
Confidence                            23332211      00112233332222    12234699999999883         345678


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~  248 (343)
                      |++.|+..     ...+++|++|+.+..+.+.+++|+...-.    ..+   +|+..+..... .++..+..|++.+.| 
T Consensus       139 LLk~LEEP-----~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-  212 (624)
T PRK14959        139 LLKTLEEP-----PARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-  212 (624)
T ss_pred             HHHHhhcc-----CCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            88888753     33678888899888898899987643322    222   33333333222 344557788888876 


Q ss_pred             CHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQE  259 (343)
Q Consensus       249 s~~di~~l~~~  259 (343)
                      +.+++.++++.
T Consensus       213 dlR~Al~lLeq  223 (624)
T PRK14959        213 SVRDSMSLLGQ  223 (624)
T ss_pred             CHHHHHHHHHH
Confidence            45555555543

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=3.5e-15  Score=145.09  Aligned_cols=184  Identities=20%  Similarity=0.257  Sum_probs=123.1

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|++|+|++.+++.|...+...           ..+..+||+||||||||++|+++|+.+.+.         
T Consensus         4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~   72 (504)
T PRK14963          4 LYQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE   72 (504)
T ss_pred             HHHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence            347889999999999999999999888642           344567999999999999999999988531         


Q ss_pred             --------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809         117 --------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELL  178 (343)
Q Consensus       117 --------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll  178 (343)
                                    ++.++..+      ......++.+...+..    ..+.||+|||+|.+         ....++.|+
T Consensus        73 C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l---------s~~a~naLL  137 (504)
T PRK14963         73 CESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM---------SKSAFNALL  137 (504)
T ss_pred             ChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc---------CHHHHHHHH
Confidence                          33333321      1112334444333322    24569999999877         234567788


Q ss_pred             hhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----H---HHHHhhhhcCCCC-CCcccHHHHHHHccCCCH
Q psy7809         179 SHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----P---IQIIGLCLGEIRK-DPNVDVATLSKQLIGYSG  250 (343)
Q Consensus       179 ~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r---~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~  250 (343)
                      ..++..     ...+++|.+++.+..+.+.+.+|+...-.    .   ...++..+..... .++..+..|+..+.| +.
T Consensus       138 k~LEep-----~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl  211 (504)
T PRK14963        138 KTLEEP-----PEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM  211 (504)
T ss_pred             HHHHhC-----CCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence            888754     33677888888889999999986542221    2   2333333333322 244557788888877 56


Q ss_pred             HHHHHHHHHHH
Q psy7809         251 SDIRDLCQEII  261 (343)
Q Consensus       251 ~di~~l~~~A~  261 (343)
                      +++.++++.++
T Consensus       212 R~aln~Lekl~  222 (504)
T PRK14963        212 RDAESLLERLL  222 (504)
T ss_pred             HHHHHHHHHHH
Confidence            77767666553

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.65  E-value=3.3e-15  Score=147.47  Aligned_cols=185  Identities=17%  Similarity=0.228  Sum_probs=127.4

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|++++|++.+.+.|...+...           ..++.+||+||+|||||++|+.+|+.+.+.         
T Consensus         6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~   74 (559)
T PRK05563          6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN   74 (559)
T ss_pred             HHHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            346788999999999999999999888642           345678999999999999999999987542         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     ++.++...      ......++.+...+..    ....|+||||+|.|.         ....+.|
T Consensus        75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt---------~~a~naL  139 (559)
T PRK05563         75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS---------TGAFNAL  139 (559)
T ss_pred             ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------HHHHHHH
Confidence                           23332211      1223446666655543    234599999999883         2457788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----H---HHHHhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----P---IQIIGLCLGEIRK-DPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r---~~il~~~~~~~~~-~~~~~~~~la~~t~g~s  249 (343)
                      ++.++..     +..+++|++|+.++.+.+.+++|+...-.    .   ...++..+..... .++..+..+|..+.| +
T Consensus       140 LKtLEep-----p~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~  213 (559)
T PRK05563        140 LKTLEEP-----PAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G  213 (559)
T ss_pred             HHHhcCC-----CCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            8888754     34678888888899999999986543322    2   2333443433322 234557788888877 6


Q ss_pred             HHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIIL  262 (343)
Q Consensus       250 ~~di~~l~~~A~~  262 (343)
                      .++..++++.+..
T Consensus       214 ~R~al~~Ldq~~~  226 (559)
T PRK05563        214 MRDALSILDQAIS  226 (559)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776544

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=3e-15  Score=148.31  Aligned_cols=186  Identities=18%  Similarity=0.213  Sum_probs=126.2

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|++|+|++.+++.|...+...           ..++.+|||||+|+|||++|+++|+.+.+.         
T Consensus         6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~   74 (576)
T PRK14965          6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN   74 (576)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence            346788999999999999999999887642           345678999999999999999999998642         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     +++++..+      ......++.+...+...    ...|+||||+|.|.         ....+.|
T Consensus        75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt---------~~a~naL  139 (576)
T PRK14965         75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS---------TNAFNAL  139 (576)
T ss_pred             ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC---------HHHHHHH
Confidence                           22222111      11223455555544321    23599999999883         3457789


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh---hhcCCC-CCCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL---CLGEIR-KDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~---~~~~~~-~~~~~~~~~la~~t~g~s  249 (343)
                      ++.|+..     +..+++|++|+.++.|.+.+++|+...-.    ..+|..+   .+.... ..++..+..|+..+.| +
T Consensus       140 Lk~LEep-----p~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~  213 (576)
T PRK14965        140 LKTLEEP-----PPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S  213 (576)
T ss_pred             HHHHHcC-----CCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence            9999854     44788888889999999999997643222    3333332   222222 2345557788888877 5


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIILI  263 (343)
Q Consensus       250 ~~di~~l~~~A~~~  263 (343)
                      .+++.++++.++.+
T Consensus       214 lr~al~~Ldqliay  227 (576)
T PRK14965        214 MRDSLSTLDQVLAF  227 (576)
T ss_pred             HHHHHHHHHHHHHh
Confidence            67776666655433

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.64  E-value=2.4e-15  Score=140.18  Aligned_cols=88  Identities=31%  Similarity=0.386  Sum_probs=63.0

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cccc-c
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYG-E  132 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~-~  132 (343)
                      -|+|++++++.+...+.....+..+....  ...|.++||+||||||||++|+++|..++.+|+.+++..+.. .|+| .
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d   92 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD   92 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence            48999999999987776532222221111  234689999999999999999999999999999999887763 5555 3


Q ss_pred             hHHHHHHHHHHH
Q psy7809         133 SEKLVRALFETA  144 (343)
Q Consensus       133 ~~~~i~~~~~~a  144 (343)
                      .+..++.+|..+
T Consensus        93 vE~i~r~l~e~A  104 (441)
T TIGR00390        93 VESMVRDLTDAA  104 (441)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444433

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.64  E-value=6.2e-15  Score=150.16  Aligned_cols=234  Identities=16%  Similarity=0.166  Sum_probs=148.3

Q ss_pred             CCCCCCCCCCCCChhHHHHhhccccccCCCCCC----------CcccccHHHHHHHHHHHhccccChHHHhccCCCCceE
Q psy7809          23 TGVPKVGPNRRANPELTALVEKDIVQTDTGVGW----------DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGI   92 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~v   92 (343)
                      +..+...++......+.+.+..-.|.+.....+          +++.|++.+|+++.+++........      ..+..+
T Consensus       279 ~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i  352 (784)
T PRK10787        279 KMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK------IKGPIL  352 (784)
T ss_pred             HhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc------CCCceE
Confidence            445677778888888888777666666555444          3589999999999988874322111      234569


Q ss_pred             EEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc---------ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC
Q psy7809          93 LLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS---------KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG  163 (343)
Q Consensus        93 ll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~---------~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~  163 (343)
                      +|+||||+|||++++.+|..++.+++.+++.....         .+.|.....+...+..+.... .||+|||+|.+...
T Consensus       353 ~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~  431 (784)
T PRK10787        353 CLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSD  431 (784)
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccc
Confidence            99999999999999999999999999887665432         234444344444444443334 48999999999653


Q ss_pred             CCchhhhHHHHHHHhhhccc---------CCCC-CCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhh
Q psy7809         164 SREHEATRRVRCELLSHMDG---------VGTG-SGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLC  226 (343)
Q Consensus       164 ~~~~~~~~~~~~~ll~~l~~---------~~~~-~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~  226 (343)
                      .+.     .....|+..++.         +... -.-+++++|+|+|.. .+++++++||.....       ..+|.+.+
T Consensus       432 ~~g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~  505 (784)
T PRK10787        432 MRG-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRH  505 (784)
T ss_pred             cCC-----CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHh
Confidence            221     123456665552         1100 012589999999987 599999999864332       44455444


Q ss_pred             hc-----CCCCC------CcccHHHHHH-HccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         227 LG-----EIRKD------PNVDVATLSK-QLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       227 ~~-----~~~~~------~~~~~~~la~-~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      +.     +....      ++.-+..+++ .+..+-.+.|+.++++.+..++.+..
T Consensus       506 L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~  560 (784)
T PRK10787        506 LLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLL  560 (784)
T ss_pred             hhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHH
Confidence            42     11111      1222444443 22333457788888877766666654

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.64  E-value=7.7e-15  Score=142.17  Aligned_cols=194  Identities=18%  Similarity=0.287  Sum_probs=120.4

Q ss_pred             CCCCCCCccc-cc--HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809          50 DTGVGWDDIA-GL--DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL  121 (343)
Q Consensus        50 ~~~~~~~~l~-G~--~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~  121 (343)
                      .+..+|++++ |.  ..+...+..+...+.          ...++++||||+|+|||+|++++++++     +..+++++
T Consensus       116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~----------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~  185 (450)
T PRK00149        116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG----------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT  185 (450)
T ss_pred             CCCCcccccccCCCcHHHHHHHHHHHhCcC----------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            4566888854 43  234555555443321          234679999999999999999999987     45688888


Q ss_pred             CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      +.++...+...........|... ...+++|+|||+|.+.+...       ....|+..++......   ..+||++...
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~~-------~~~~l~~~~n~l~~~~---~~iiits~~~  254 (450)
T PRK00149        186 SEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKER-------TQEEFFHTFNALHEAG---KQIVLTSDRP  254 (450)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCHH-------HHHHHHHHHHHHHHCC---CcEEEECCCC
Confidence            87766543332221111122222 22468999999999854221       1223333333322211   3456655555


Q ss_pred             CCC---CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         202 PWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       202 ~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      |..   +++.+.+||..-+.          |..|++..+..... .++..++.||..+.| +.++|..++......+.
T Consensus       255 p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~  331 (450)
T PRK00149        255 PKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS  331 (450)
T ss_pred             HHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence            554   67889999965322          88899888875432 345558899999877 78888877776655543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.64  E-value=5.5e-15  Score=152.12  Aligned_cols=207  Identities=18%  Similarity=0.196  Sum_probs=145.3

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---  114 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---  114 (343)
                      ..+.....+.....+-.+++++|+++.++++.+.+..            ....+++|+||||||||++|+.+|..+.   
T Consensus       169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~  236 (852)
T TIGR03345       169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGD  236 (852)
T ss_pred             hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCC
Confidence            4555556666777788999999999988888776654            2345889999999999999999998862   


Q ss_pred             -------CceEEEcCCccc--cccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         115 -------STFFNVLPSSLT--SKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       115 -------~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                             .+++.++...+.  ..+.|+.+..++.++..+.. ..+.||||||+|.+++.+..... ....+.|...+.  
T Consensus       237 v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~~n~Lkp~l~--  313 (852)
T TIGR03345       237 VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GDAANLLKPALA--  313 (852)
T ss_pred             CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-ccHHHHhhHHhh--
Confidence                   457777777765  35778888999999998865 35789999999999874322111 122233444442  


Q ss_pred             CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcCCC-----CCCcccHHHHHHHccC
Q psy7809         185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGEIR-----KDPNVDVATLSKQLIG  247 (343)
Q Consensus       185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-----~~~~~~~~~la~~t~g  247 (343)
                           .+.+.+||+|+..+     .+|+++.|||.....       +..||+.+.....     ...+..+..++..+.+
T Consensus       314 -----~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r  388 (852)
T TIGR03345       314 -----RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR  388 (852)
T ss_pred             -----CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence                 33688999998643     489999999964322       6677655554321     1256668889999988


Q ss_pred             CC-----HHHHHHHHHHHHHHH
Q psy7809         248 YS-----GSDIRDLCQEIILIA  264 (343)
Q Consensus       248 ~s-----~~di~~l~~~A~~~a  264 (343)
                      |-     |.---++++.|+...
T Consensus       389 yi~~r~LPDKAIdlldea~a~~  410 (852)
T TIGR03345       389 YIPGRQLPDKAVSLLDTACARV  410 (852)
T ss_pred             ccccccCccHHHHHHHHHHHHH
Confidence            83     333346667666543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.63  E-value=8.3e-15  Score=142.17  Aligned_cols=187  Identities=21%  Similarity=0.202  Sum_probs=126.7

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++++.+|++++|++.+++.|...+...           ..++.+|||||+|+|||++|+++|+.+.+.         
T Consensus         4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~   72 (535)
T PRK08451          4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD   72 (535)
T ss_pred             HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence            456889999999999999999999887532           345567999999999999999999987421         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     ++.++...      ......++.+......    ....|++|||+|.|         .....+.|
T Consensus        73 ~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L---------t~~A~NAL  137 (535)
T PRK08451         73 TCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML---------TKEAFNAL  137 (535)
T ss_pred             ccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC---------CHHHHHHH
Confidence                           22222111      0012345554443321    12359999999988         34567788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh---hhcCCC-CCCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL---CLGEIR-KDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~---~~~~~~-~~~~~~~~~la~~t~g~s  249 (343)
                      ++.|+..     +..+.+|.+|+++..+.+++++|+...-.    ..++..+   .+.... ..++..+..|+..+.| +
T Consensus       138 LK~LEEp-----p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d  211 (535)
T PRK08451        138 LKTLEEP-----PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S  211 (535)
T ss_pred             HHHHhhc-----CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence            9988865     33677777888889999999997542222    3333222   222222 2245567789998877 7


Q ss_pred             HHHHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIILIA  264 (343)
Q Consensus       250 ~~di~~l~~~A~~~a  264 (343)
                      .+++.++++.|+..+
T Consensus       212 lR~alnlLdqai~~~  226 (535)
T PRK08451        212 LRDTLTLLDQAIIYC  226 (535)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            888888888877654

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.62  E-value=7.7e-15  Score=142.24  Aligned_cols=192  Identities=17%  Similarity=0.152  Sum_probs=122.6

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce-E-----
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-F-----  118 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-~-----  118 (343)
                      ++.+++++.+|++++|++.+.+.|...+...           ..++.+|||||+|+|||++|+.+|+.+++.- .     
T Consensus         5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc   73 (486)
T PRK14953          5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC   73 (486)
T ss_pred             HHHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence            4557788999999999999999999888542           3445688999999999999999999886410 0     


Q ss_pred             --EEcCC--------ccc--cccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         119 --NVLPS--------SLT--SKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       119 --~v~~~--------~l~--~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                        ..+|.        ++.  ..........++.+...+..    ..+.|++|||+|.+.         ....+.|+..++
T Consensus        74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt---------~~a~naLLk~LE  144 (486)
T PRK14953         74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT---------KEAFNALLKTLE  144 (486)
T ss_pred             CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC---------HHHHHHHHHHHh
Confidence              00110        010  00000112234454444432    234699999999883         234667888887


Q ss_pred             cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809         183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR  254 (343)
Q Consensus       183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~  254 (343)
                      ..     +..+++|.+|+.++.+.+++.+|+...-.       ....++..+..... .++..+..|+..+.| +.+++.
T Consensus       145 ep-----p~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al  218 (486)
T PRK14953        145 EP-----PPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAA  218 (486)
T ss_pred             cC-----CCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence            54     33566666777788888899887653222       33344444444332 234456788888876 677777


Q ss_pred             HHHHHHHH
Q psy7809         255 DLCQEIIL  262 (343)
Q Consensus       255 ~l~~~A~~  262 (343)
                      ++++.+..
T Consensus       219 ~~Ldkl~~  226 (486)
T PRK14953        219 SLLDQAST  226 (486)
T ss_pred             HHHHHHHH
Confidence            77776653

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.62  E-value=4.2e-15  Score=153.35  Aligned_cols=173  Identities=21%  Similarity=0.268  Sum_probs=127.8

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----  113 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----  113 (343)
                      ..+....++.....+-.++.++|++...+++.+.+..            ....+++|+||||||||++|+.+|..+    
T Consensus       160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~  227 (857)
T PRK10865        160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGE  227 (857)
T ss_pred             HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence            4555556666667778899999999988888877754            234578999999999999999999987    


Q ss_pred             ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                            +.+++.++...+.  .++.|+.+..++.+|..+.. ..++||||||+|.|++.+.... .....+.|...+.  
T Consensus       228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~~~~lkp~l~--  304 (857)
T PRK10865        228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPALA--  304 (857)
T ss_pred             CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhHHHHhcchhh--
Confidence                  6788888887765  45778888889999987644 4678999999999986432221 1223333433332  


Q ss_pred             CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcCC
Q psy7809         185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGEI  230 (343)
Q Consensus       185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~~  230 (343)
                           .+.+.+||+|+..+     .+|+++.|||+....       +..|++.+...+
T Consensus       305 -----~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~  357 (857)
T PRK10865        305 -----RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERY  357 (857)
T ss_pred             -----cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhh
Confidence                 34788999998876     489999999975443       666777665543

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.62  E-value=4.2e-15  Score=137.72  Aligned_cols=144  Identities=24%  Similarity=0.198  Sum_probs=101.5

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      +.+++++.+|++++|++++++.+..++...           ..+..+||+||||+|||+++++++++++.+++++++.+ 
T Consensus        11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-   78 (316)
T PHA02544         11 WEQKYRPSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-   78 (316)
T ss_pred             ceeccCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence            568899999999999999999999887531           34456677999999999999999999999999998876 


Q ss_pred             ccccccchHHHHHHHHHHHH-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809         126 TSKHYGESEKLVRALFETAR-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD  204 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~  204 (343)
                       .. .......+..+..... ...+.+|+|||+|.+..        ......|...++..     ..++.+|+++|.+..
T Consensus        79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~~L~~~le~~-----~~~~~~Ilt~n~~~~  143 (316)
T PHA02544         79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQRHLRSFMEAY-----SKNCSFIITANNKNG  143 (316)
T ss_pred             -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHHHHHHHHHhc-----CCCceEEEEcCChhh
Confidence             21 2222222222211111 12467999999998722        11223344445543     235678889999999


Q ss_pred             CCHHHhccccCc
Q psy7809         205 LDEALKRRFEKR  216 (343)
Q Consensus       205 l~~~l~~rf~~~  216 (343)
                      +.+++++||...
T Consensus       144 l~~~l~sR~~~i  155 (316)
T PHA02544        144 IIEPLRSRCRVI  155 (316)
T ss_pred             chHHHHhhceEE
Confidence            999999987543

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.62  E-value=2.3e-14  Score=137.21  Aligned_cols=193  Identities=17%  Similarity=0.296  Sum_probs=118.9

Q ss_pred             CCCCCCCc-ccccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809          50 DTGVGWDD-IAGLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL  121 (343)
Q Consensus        50 ~~~~~~~~-l~G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~  121 (343)
                      .+..+|++ ++|...  +...+..+...+          ...+.+++||||+|+|||+|++++++++     +..+++++
T Consensus       104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~  173 (405)
T TIGR00362       104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS  173 (405)
T ss_pred             CCCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            35678888 446433  333444443322          1234579999999999999999999887     56788888


Q ss_pred             CCccccccccchHH-HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         122 PSSLTSKHYGESEK-LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       122 ~~~l~~~~~~~~~~-~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      +.++.......... .+..+....  ..+++|+|||+|.+.+...       ....|+..++......   ..+||++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~~-------~~~~l~~~~n~~~~~~---~~iiits~~  241 (405)
T TIGR00362       174 SEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKER-------TQEEFFHTFNALHENG---KQIVLTSDR  241 (405)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCHH-------HHHHHHHHHHHHHHCC---CCEEEecCC
Confidence            87765433222111 111222222  2357999999999864221       1223333333222211   345555555


Q ss_pred             CCCC---CCHHHhccccCcc--h--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         201 HPWD---LDEALKRRFEKRI--S--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       201 ~~~~---l~~~l~~rf~~~i--~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      .|..   +++.+.+||...+  .        |..|++..+..... .++..++.||....+ +.++|..++.+....|.
T Consensus       242 ~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~  319 (405)
T TIGR00362       242 PPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS  319 (405)
T ss_pred             CHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            5554   5688899997532  2        88999988876533 255567889999877 78888888877665554

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.62  E-value=8.8e-15  Score=137.72  Aligned_cols=186  Identities=19%  Similarity=0.253  Sum_probs=124.4

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------  116 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------  116 (343)
                      .+.+++++.+|++++|++.+++.|...+...           ..++.+||+||||+|||++|+++++.+.+.        
T Consensus         3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c   71 (355)
T TIGR02397         3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC   71 (355)
T ss_pred             cHHHHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence            3456788999999999999999999877532           345678999999999999999999987532        


Q ss_pred             ----------------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                      ++.++...      ......++.++..+...    ...|++|||+|.+.         ....+.
T Consensus        72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~---------~~~~~~  136 (355)
T TIGR02397        72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS---------KSAFNA  136 (355)
T ss_pred             CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC---------HHHHHH
Confidence                            22222210      11223456666655432    23599999999883         234667


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~  248 (343)
                      |++.++..     +..+++|+++++++.+.+.+++|+...-.       ...+++..+..... .++..+..++..+.| 
T Consensus       137 Ll~~le~~-----~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-  210 (355)
T TIGR02397       137 LLKTLEEP-----PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-  210 (355)
T ss_pred             HHHHHhCC-----ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            77877653     33677788888888888899987643222       34445544444332 234556778888866 


Q ss_pred             CHHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEIIL  262 (343)
Q Consensus       249 s~~di~~l~~~A~~  262 (343)
                      +.+.+.+.++.+..
T Consensus       211 ~~~~a~~~lekl~~  224 (355)
T TIGR02397       211 SLRDALSLLDQLIS  224 (355)
T ss_pred             ChHHHHHHHHHHHh
Confidence            66777666665544

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.61  E-value=1.6e-14  Score=142.89  Aligned_cols=193  Identities=17%  Similarity=0.130  Sum_probs=128.0

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc--
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL--  121 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~--  121 (343)
                      +.+.+++.+.+|++|+|++.+++.|...+...           +.+.++||+||+|+|||++|+.+|+.+.+.....+  
T Consensus        12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~   80 (598)
T PRK09111         12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG   80 (598)
T ss_pred             hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence            34557889999999999999999999888642           45678999999999999999999999875432111  


Q ss_pred             -----------C--------Ccccccc--ccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         122 -----------P--------SSLTSKH--YGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       122 -----------~--------~~l~~~~--~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                 |        .++....  .......++.++..+...    ...|+||||+|.|.         ....+.
T Consensus        81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls---------~~a~na  151 (598)
T PRK09111         81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS---------TAAFNA  151 (598)
T ss_pred             CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC---------HHHHHH
Confidence                       1        0110000  001133456666555432    34699999999882         345778


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCC-CCCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIR-KDPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~-~~~~~~~~~la~~t~g~  248 (343)
                      |++.|+..     +..+.+|++|+.++.+.+.+++|+...-.    ..+   .++..+.... ..++..++.|+..+.| 
T Consensus       152 LLKtLEeP-----p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-  225 (598)
T PRK09111        152 LLKTLEEP-----PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-  225 (598)
T ss_pred             HHHHHHhC-----CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            88888754     34677777888888888899987643222    223   2333333332 2234556778888877 


Q ss_pred             CHHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEIIL  262 (343)
Q Consensus       249 s~~di~~l~~~A~~  262 (343)
                      +.+++.++++.++.
T Consensus       226 dlr~al~~Ldkli~  239 (598)
T PRK09111        226 SVRDGLSLLDQAIA  239 (598)
T ss_pred             CHHHHHHHHHHHHh
Confidence            67888777776543

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.61  E-value=1.6e-14  Score=142.15  Aligned_cols=185  Identities=19%  Similarity=0.194  Sum_probs=124.4

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +-+++.+.+|++|+|++.+++.|...+...           ..++.+|||||+|+|||++|+++|+.+.+.         
T Consensus         6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~   74 (563)
T PRK06647          6 TATKRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG   74 (563)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence            346788999999999999999999888642           345679999999999999999999998652         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     ++.++...      ......++.+...+.    .....|++|||+|.|         .....+.|
T Consensus        75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L---------s~~a~naL  139 (563)
T PRK06647         75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML---------SNSAFNAL  139 (563)
T ss_pred             cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc---------CHHHHHHH
Confidence                           11111100      011233444443332    234569999999988         23467788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s  249 (343)
                      ++.++..     +..+++|++|+.+..+.+++++|+...-.       ....++..+.... ..++..+..||..+.| +
T Consensus       140 LK~LEep-----p~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d  213 (563)
T PRK06647        140 LKTIEEP-----PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S  213 (563)
T ss_pred             HHhhccC-----CCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            8888753     44678888888888999999997653222       2233333332222 2345557788888877 6


Q ss_pred             HHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIIL  262 (343)
Q Consensus       250 ~~di~~l~~~A~~  262 (343)
                      .+++..+++.++.
T Consensus       214 lR~alslLdklis  226 (563)
T PRK06647        214 VRDAYTLFDQVVS  226 (563)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777766543

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.60  E-value=4.4e-14  Score=133.47  Aligned_cols=195  Identities=20%  Similarity=0.172  Sum_probs=118.4

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---------CceEEEcCCccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------STFFNVLPSSLT  126 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------~~~~~v~~~~l~  126 (343)
                      ++++|.++.++.|...+.....        ...+.+++|+||||||||++++.+++++.         ..+++++|....
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~   86 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD   86 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence            4789999999999888753211        13456799999999999999999998763         467888886543


Q ss_pred             ccc---------c----------c-chHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809         127 SKH---------Y----------G-ESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG  185 (343)
Q Consensus       127 ~~~---------~----------~-~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~  185 (343)
                      ..+         .          + .....+..++..... ..+.||+|||+|.+....      ..++..|+...+...
T Consensus        87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------~~~L~~l~~~~~~~~  160 (365)
T TIGR02928        87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------DDLLYQLSRARSNGD  160 (365)
T ss_pred             CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------cHHHHhHhccccccC
Confidence            210         0          0 112233444444432 346799999999997321      124445544421111


Q ss_pred             CCCCCCCEEEEEecCCCC---CCCHHHhcccc-Ccch--------HHHHHhhhhcCC---CCCCcccHHH---HHHHccC
Q psy7809         186 TGSGDKGVLVLAATNHPW---DLDEALKRRFE-KRIS--------PIQIIGLCLGEI---RKDPNVDVAT---LSKQLIG  247 (343)
Q Consensus       186 ~~~~~~~v~vI~ttn~~~---~l~~~l~~rf~-~~i~--------r~~il~~~~~~~---~~~~~~~~~~---la~~t~g  247 (343)
                        ....++.+|+++|.++   .+++.+.+||. ..+.        ..+|++..+...   ....+..++.   ++..+.|
T Consensus       161 --~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G  238 (365)
T TIGR02928       161 --LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG  238 (365)
T ss_pred             --CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence              1124788999999886   47788888875 2233        556666665421   1112222333   3444445


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy7809         248 YSGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       248 ~s~~di~~l~~~A~~~a~~r  267 (343)
                      . .+...++|+.|...|..+
T Consensus       239 d-~R~al~~l~~a~~~a~~~  257 (365)
T TIGR02928       239 D-ARKAIDLLRVAGEIAERE  257 (365)
T ss_pred             C-HHHHHHHHHHHHHHHHHc
Confidence            3 455556788888777644

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.60  E-value=8e-15  Score=151.35  Aligned_cols=206  Identities=19%  Similarity=0.194  Sum_probs=144.7

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----  113 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----  113 (343)
                      ..+.+...+......-.++.++|.++.++++.+.+..            ...++++|+||||||||++|+.+|.++    
T Consensus       161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~  228 (821)
T CHL00095        161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRD  228 (821)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            4444555555556667799999999999999988864            345689999999999999999999886    


Q ss_pred             ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC
Q psy7809         114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG  185 (343)
Q Consensus       114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~  185 (343)
                            +.+++.++...+.  ..|.|+.+..+..+++.+....++||||||+|.|++.+..... ..+.+.|...+.   
T Consensus       229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~~a~lLkp~l~---  304 (821)
T CHL00095        229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-IDAANILKPALA---  304 (821)
T ss_pred             CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-ccHHHHhHHHHh---
Confidence                  3678999988776  4677888999999999998888899999999999874322111 123333333332   


Q ss_pred             CCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcC----CCC-CCcccHHHHHHHccCC
Q psy7809         186 TGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGE----IRK-DPNVDVATLSKQLIGY  248 (343)
Q Consensus       186 ~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~----~~~-~~~~~~~~la~~t~g~  248 (343)
                          ...+.+|++|+..+     ..++++.+||.....       ...|++.....    ..+ .++..+..++..+.+|
T Consensus       305 ----rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y  380 (821)
T CHL00095        305 ----RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY  380 (821)
T ss_pred             ----CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence                23688899888763     478999999975332       44555543322    111 3455577888888888


Q ss_pred             CH-----HHHHHHHHHHHHH
Q psy7809         249 SG-----SDIRDLCQEIILI  263 (343)
Q Consensus       249 s~-----~di~~l~~~A~~~  263 (343)
                      .+     .---.+++.|+..
T Consensus       381 i~~r~lPdkaidlld~a~a~  400 (821)
T CHL00095        381 IADRFLPDKAIDLLDEAGSR  400 (821)
T ss_pred             CccccCchHHHHHHHHHHHH
Confidence            53     2233555655543

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.60  E-value=7.1e-15  Score=137.14  Aligned_cols=88  Identities=30%  Similarity=0.372  Sum_probs=62.4

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cccc-c
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYG-E  132 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~-~  132 (343)
                      .|+|++++++.+...+.....+..+....  -..+.++||+||||||||++|+++|..++.+|+.+++..+.. .|+| .
T Consensus        16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d   95 (443)
T PRK05201         16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD   95 (443)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence            48999999999988775422111111111  123579999999999999999999999999999999987774 4666 3


Q ss_pred             hHHHHHHHHHHH
Q psy7809         133 SEKLVRALFETA  144 (343)
Q Consensus       133 ~~~~i~~~~~~a  144 (343)
                      .+..++.+|..|
T Consensus        96 ~e~~ir~L~~~A  107 (443)
T PRK05201         96 VESIIRDLVEIA  107 (443)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444444

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.60  E-value=1e-13  Score=137.88  Aligned_cols=189  Identities=17%  Similarity=0.173  Sum_probs=123.8

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE----E
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN----V  120 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~----v  120 (343)
                      .+..++++..|++++|++.+++.|...+...           +...++||+||+|+|||++|+++|+.+.+....    -
T Consensus         5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~   73 (620)
T PRK14948          5 PLHHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE   73 (620)
T ss_pred             hHHHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC
Confidence            4556788899999999999999999888643           234579999999999999999999998763110    0


Q ss_pred             cCC--------------ccc--cccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhh
Q psy7809         121 LPS--------------SLT--SKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSH  180 (343)
Q Consensus       121 ~~~--------------~l~--~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~  180 (343)
                      .|.              ++.  ..........++.++..+..    ....|+||||+|.|-         ....+.|++.
T Consensus        74 ~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------~~a~naLLK~  144 (620)
T PRK14948         74 PCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------TAAFNALLKT  144 (620)
T ss_pred             CCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC---------HHHHHHHHHH
Confidence            010              010  00111233456676665543    234699999999882         3467788998


Q ss_pred             cccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHH---HhhhhcCCC-CCCcccHHHHHHHccCCCHHH
Q psy7809         181 MDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQI---IGLCLGEIR-KDPNVDVATLSKQLIGYSGSD  252 (343)
Q Consensus       181 l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~i---l~~~~~~~~-~~~~~~~~~la~~t~g~s~~d  252 (343)
                      ++..     ...+++|++|++++.+.+.+++|+...-.    ..++   +...+.+.. ......+..+++.+.| +.++
T Consensus       145 LEeP-----p~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~  218 (620)
T PRK14948        145 LEEP-----PPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRD  218 (620)
T ss_pred             HhcC-----CcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence            8853     34678888888888898999987644322    2222   223332321 1233457788888877 4566


Q ss_pred             HHHHHHH
Q psy7809         253 IRDLCQE  259 (343)
Q Consensus       253 i~~l~~~  259 (343)
                      +.++++.
T Consensus       219 A~~lLek  225 (620)
T PRK14948        219 AESLLDQ  225 (620)
T ss_pred             HHHHHHH
Confidence            6555554

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.60  E-value=3.8e-14  Score=132.40  Aligned_cols=181  Identities=16%  Similarity=0.173  Sum_probs=112.8

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEE
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNV  120 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v  120 (343)
                      +.+++.+.+|++++|++.+++.|..++...            ...+++|+||||||||++|+++++++.     .+++++
T Consensus         5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i   72 (337)
T PRK12402          5 WTEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF   72 (337)
T ss_pred             hHHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence            567788999999999999999999887532            223699999999999999999999884     346777


Q ss_pred             cCCccccccc-------------cc-------hHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHH
Q psy7809         121 LPSSLTSKHY-------------GE-------SEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRC  175 (343)
Q Consensus       121 ~~~~l~~~~~-------------~~-------~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~  175 (343)
                      ++.++.....             +.       ....++.+.......     .+.+|+|||+|.+..         ....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------~~~~  143 (337)
T PRK12402         73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------DAQQ  143 (337)
T ss_pred             chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------HHHH
Confidence            7766532110             00       112233333333222     246999999998831         2334


Q ss_pred             HHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccC
Q psy7809         176 ELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIG  247 (343)
Q Consensus       176 ~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g  247 (343)
                      .|...++....     ...+|.+++.+..+.+.+.+|+.....       ...+++..+..... .++..+..|+..+.|
T Consensus       144 ~L~~~le~~~~-----~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g  218 (337)
T PRK12402        144 ALRRIMEQYSR-----TCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG  218 (337)
T ss_pred             HHHHHHHhccC-----CCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            55555554322     334555666666777888887533221       44555555444322 245556777777743


Q ss_pred             CCHHHH
Q psy7809         248 YSGSDI  253 (343)
Q Consensus       248 ~s~~di  253 (343)
                       +.+.+
T Consensus       219 -dlr~l  223 (337)
T PRK12402        219 -DLRKA  223 (337)
T ss_pred             -CHHHH
Confidence             33333

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.59  E-value=2.8e-14  Score=147.72  Aligned_cols=206  Identities=19%  Similarity=0.230  Sum_probs=144.4

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----  113 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----  113 (343)
                      ..+.....+.....+-.++.++|+++..+++.+.+..            ....+++|+||||||||++|+.+|..+    
T Consensus       155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~  222 (852)
T TIGR03346       155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD  222 (852)
T ss_pred             HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence            4555555666667778899999999988888887754            234678999999999999999999886    


Q ss_pred             ------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         114 ------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       114 ------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                            +.+++.++...+.  ..+.|..+..+..+|..+... .+.||||||+|.|++.+.... .....+.|...+.  
T Consensus       223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~d~~~~Lk~~l~--  299 (852)
T TIGR03346       223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AMDAGNMLKPALA--  299 (852)
T ss_pred             CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hhHHHHHhchhhh--
Confidence                  5678888877765  457788888899999988653 588999999999986332211 1123333333332  


Q ss_pred             CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch-------HHHHHhhhhcCCCC-----CCcccHHHHHHHccC
Q psy7809         185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-----DPNVDVATLSKQLIG  247 (343)
Q Consensus       185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-----~~~~~~~~la~~t~g  247 (343)
                           ...+.+|++|+..+     .+|+++.|||.....       +..|++.+...+..     ..+..+...+..+.+
T Consensus       300 -----~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~  374 (852)
T TIGR03346       300 -----RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR  374 (852)
T ss_pred             -----cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc
Confidence                 33688999998763     579999999975433       66777766555422     244556777888887


Q ss_pred             CCH-----HHHHHHHHHHHHH
Q psy7809         248 YSG-----SDIRDLCQEIILI  263 (343)
Q Consensus       248 ~s~-----~di~~l~~~A~~~  263 (343)
                      |-.     .---+|+++|+..
T Consensus       375 yi~~r~lPdkAidlld~a~a~  395 (852)
T TIGR03346       375 YITDRFLPDKAIDLIDEAAAR  395 (852)
T ss_pred             cccccCCchHHHHHHHHHHHH
Confidence            742     2233556666553

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG2028|consensus

Probab=99.59  E-value=1.7e-14  Score=129.88  Aligned_cols=174  Identities=22%  Similarity=0.371  Sum_probs=110.7

Q ss_pred             cccccCCCCCCCcccccHHHHHH---HHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---eE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQI---FKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---FF  118 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~  118 (343)
                      ++.++-.+.+++|++||+.+..+   |+.++..            ..-.+++||||||||||+||+.|+.-...+   |+
T Consensus       127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfv  194 (554)
T KOG2028|consen  127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFV  194 (554)
T ss_pred             ChhhhcCcchHHHhcchhhhcCcchHHHHHHHc------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEE
Confidence            45667778899999999887654   2222221            234589999999999999999999887655   66


Q ss_pred             EEcCCccccccccchHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809         119 NVLPSSLTSKHYGESEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV  193 (343)
Q Consensus       119 ~v~~~~l~~~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v  193 (343)
                      +++...-       ....++.+|+.++..     ...|||||||+.+-.         .-+..|+-.++       .+.|
T Consensus       195 elSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk---------sQQD~fLP~VE-------~G~I  251 (554)
T KOG2028|consen  195 ELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK---------SQQDTFLPHVE-------NGDI  251 (554)
T ss_pred             EEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh---------hhhhcccceec-------cCce
Confidence            6654332       223467777777542     357999999988833         22335555553       3367


Q ss_pred             EEEEec-CCC-CCCCHHHhccccCcch-------HHHHHhhhhc---CC-----CC------CCcccHHHHHHHccCCCH
Q psy7809         194 LVLAAT-NHP-WDLDEALKRRFEKRIS-------PIQIIGLCLG---EI-----RK------DPNVDVATLSKQLIGYSG  250 (343)
Q Consensus       194 ~vI~tt-n~~-~~l~~~l~~rf~~~i~-------r~~il~~~~~---~~-----~~------~~~~~~~~la~~t~g~s~  250 (343)
                      ++||+| .+| -.|+.++++|+...+.       -..||...+.   .-     .+      .++--++.||..++|-..
T Consensus       252 ~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR  331 (554)
T KOG2028|consen  252 TLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR  331 (554)
T ss_pred             EEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence            777665 344 4689999998765543       2233333221   10     11      122336778888888655


Q ss_pred             HHH
Q psy7809         251 SDI  253 (343)
Q Consensus       251 ~di  253 (343)
                      ..|
T Consensus       332 ~aL  334 (554)
T KOG2028|consen  332 AAL  334 (554)
T ss_pred             HHH
Confidence            555

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=4.1e-14  Score=134.81  Aligned_cols=192  Identities=17%  Similarity=0.169  Sum_probs=118.9

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN------  119 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~------  119 (343)
                      +-+++.+.+|++|+|++.+++.|...+...           ..+..+||+||+|+|||++|+++|+.+.+.-..      
T Consensus         6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~   74 (397)
T PRK14955          6 IARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL   74 (397)
T ss_pred             HHHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence            346788999999999999999998877642           345679999999999999999999998763100      


Q ss_pred             ----EcCC--------------cccc--ccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHH
Q psy7809         120 ----VLPS--------------SLTS--KHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRC  175 (343)
Q Consensus       120 ----v~~~--------------~l~~--~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~  175 (343)
                          -.|.              ++..  .........++.+...+..    ....|+||||+|.+.         ....+
T Consensus        75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~---------~~~~~  145 (397)
T PRK14955         75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS---------IAAFN  145 (397)
T ss_pred             ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC---------HHHHH
Confidence                0010              0000  0000112334444443321    123599999999883         23456


Q ss_pred             HHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcc----hHHHHH---hhhhcCCC-CCCcccHHHHHHHccC
Q psy7809         176 ELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI----SPIQII---GLCLGEIR-KDPNVDVATLSKQLIG  247 (343)
Q Consensus       176 ~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i----~r~~il---~~~~~~~~-~~~~~~~~~la~~t~g  247 (343)
                      .|++.++..     +...++|++++.+..+.+.+.+|+...-    ...++.   ...+.... ..++..++.|+..+.|
T Consensus       146 ~LLk~LEep-----~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g  220 (397)
T PRK14955        146 AFLKTLEEP-----PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG  220 (397)
T ss_pred             HHHHHHhcC-----CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            778887643     2356666677777888888888653211    133332   22222222 2345557788888876


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy7809         248 YSGSDIRDLCQEIILI  263 (343)
Q Consensus       248 ~s~~di~~l~~~A~~~  263 (343)
                       +.+.+.+.++.+..+
T Consensus       221 -~lr~a~~~L~kl~~~  235 (397)
T PRK14955        221 -SMRDAQSILDQVIAF  235 (397)
T ss_pred             -CHHHHHHHHHHHHHh
Confidence             567776766655444

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.58  E-value=6e-14  Score=135.20  Aligned_cols=184  Identities=21%  Similarity=0.234  Sum_probs=119.8

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+.+|+||+|++.+++.|...+...           ..+..+|||||+|+|||++|+++|+.+.+.         
T Consensus         7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c   75 (451)
T PRK06305          7 SSRKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC   75 (451)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence            346778899999999999999999888642           345679999999999999999999987542         


Q ss_pred             ----------------eEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchhhhHHHHHH
Q psy7809         117 ----------------FFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHEATRRVRCE  176 (343)
Q Consensus       117 ----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~  176 (343)
                                      ++.++....      .....++.+....    ......|++|||+|.+.         ....+.
T Consensus        76 ~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt---------~~~~n~  140 (451)
T PRK06305         76 NQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT---------KEAFNS  140 (451)
T ss_pred             cccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC---------HHHHHH
Confidence                            222211110      0112233222222    22345799999999883         235678


Q ss_pred             HhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHH---hhhhcCCCC-CCcccHHHHHHHccCC
Q psy7809         177 LLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQII---GLCLGEIRK-DPNVDVATLSKQLIGY  248 (343)
Q Consensus       177 ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il---~~~~~~~~~-~~~~~~~~la~~t~g~  248 (343)
                      |++.++..     +..+++|++|+.+..+.+.+++|+...-.    ..++.   ...+..... .++..+..|+..+.| 
T Consensus       141 LLk~lEep-----~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-  214 (451)
T PRK06305        141 LLKTLEEP-----PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-  214 (451)
T ss_pred             HHHHhhcC-----CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence            88888764     33677778888888899999997653322    33333   333322222 344557788888866 


Q ss_pred             CHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEII  261 (343)
Q Consensus       249 s~~di~~l~~~A~  261 (343)
                      +.+++.++++...
T Consensus       215 dlr~a~~~Lekl~  227 (451)
T PRK06305        215 SLRDAESLYDYVV  227 (451)
T ss_pred             CHHHHHHHHHHHH
Confidence            5666666665543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.58  E-value=5.5e-14  Score=135.27  Aligned_cols=193  Identities=14%  Similarity=0.232  Sum_probs=116.8

Q ss_pred             cCCCCCCCccc-ccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEE
Q psy7809          49 TDTGVGWDDIA-GLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNV  120 (343)
Q Consensus        49 ~~~~~~~~~l~-G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v  120 (343)
                      -.+..+|++++ |...  +...+.++...+           ...++++||||+|+|||+|++++++++     +..++++
T Consensus        98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~-----------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi  166 (440)
T PRK14088         98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP-----------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI  166 (440)
T ss_pred             CCCCCcccccccCCchHHHHHHHHHHHhCc-----------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            35667899876 5432  233333333221           124579999999999999999999886     4567888


Q ss_pred             cCCccccccccchHH-HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         121 LPSSLTSKHYGESEK-LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~-~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ++.++.......... .+. -|.......+.+|+|||++.+.+...       ....|+..++.+...   ...+||++.
T Consensus       167 ~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~~-------~q~elf~~~n~l~~~---~k~iIitsd  235 (440)
T PRK14088        167 TSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKTG-------VQTELFHTFNELHDS---GKQIVICSD  235 (440)
T ss_pred             EHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcHH-------HHHHHHHHHHHHHHc---CCeEEEECC
Confidence            887765443222111 112 23323333578999999998864211       112233333322221   134555555


Q ss_pred             CCCCC---CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809         200 NHPWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       200 n~~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a  264 (343)
                      ..|..   +.+.+.+||...+.          |..|++..+..... .++..++.||+...| +.++|..++.+....+
T Consensus       236 ~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~  313 (440)
T PRK14088        236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK  313 (440)
T ss_pred             CCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence            66665   45678888864432          88888888765322 244558889998877 6788887777655444

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.58  E-value=8.6e-14  Score=136.12  Aligned_cols=192  Identities=16%  Similarity=0.277  Sum_probs=117.7

Q ss_pred             CCCCCCccc-ccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcC
Q psy7809          51 TGVGWDDIA-GLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLP  122 (343)
Q Consensus        51 ~~~~~~~l~-G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~  122 (343)
                      +..+|++++ |..+  +...+..++..+          ....+.++|||++|+|||+|++++|+++     +..++++++
T Consensus       283 ~~~TFDnFvvG~sN~~A~aaa~avae~~----------~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita  352 (617)
T PRK14086        283 PKYTFDTFVIGASNRFAHAAAVAVAEAP----------AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS  352 (617)
T ss_pred             CCCCHhhhcCCCccHHHHHHHHHHHhCc----------cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence            456788875 4322  233344433321          0223459999999999999999999876     467889988


Q ss_pred             CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC-
Q psy7809         123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH-  201 (343)
Q Consensus       123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~-  201 (343)
                      .++...+...........|... ...+++|+||||+.+........       .|+..++.+...   ...+|| |++. 
T Consensus       353 eef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke~tqe-------eLF~l~N~l~e~---gk~III-TSd~~  420 (617)
T PRK14086        353 EEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKESTQE-------EFFHTFNTLHNA---NKQIVL-SSDRP  420 (617)
T ss_pred             HHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCHHHHH-------HHHHHHHHHHhc---CCCEEE-ecCCC
Confidence            8777554433222212223322 23468999999999865322222       222222222221   123444 5554 


Q ss_pred             CC---CCCHHHhccccCcch----------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         202 PW---DLDEALKRRFEKRIS----------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       202 ~~---~l~~~l~~rf~~~i~----------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      |.   .+++.|.+||..-+.          |..||+..+....+. ++.-++.|+....+ +.++|..++.+....+.
T Consensus       421 P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~  497 (617)
T PRK14086        421 PKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS  497 (617)
T ss_pred             hHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence            43   467899999977664          999999888765333 44557789888876 67888877776554443

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=2.2e-13  Score=135.04  Aligned_cols=191  Identities=17%  Similarity=0.188  Sum_probs=121.2

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN------  119 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~------  119 (343)
                      +.+++++.+|++|+|++.+++.|...+...           .-+.++||+||+|+|||++|+.+|+.+.+.--.      
T Consensus         6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~   74 (620)
T PRK14954          6 IARKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL   74 (620)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence            346788999999999999999999877542           345679999999999999999999998763100      


Q ss_pred             ----EcCC--------------cccccccc---chHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHH
Q psy7809         120 ----VLPS--------------SLTSKHYG---ESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVR  174 (343)
Q Consensus       120 ----v~~~--------------~l~~~~~~---~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~  174 (343)
                          -.|.              ++.. ..+   .....++.+...+.    .....|+||||+|.+.         ....
T Consensus        75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~-~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt---------~~a~  144 (620)
T PRK14954         75 QEVTEPCGECESCRDFDAGTSLNISE-FDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS---------TAAF  144 (620)
T ss_pred             cccCCCCccCHHHHHHhccCCCCeEE-ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC---------HHHH
Confidence                0010              0000 001   11233444444332    1234699999999883         2346


Q ss_pred             HHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHH---hhhhcCCC-CCCcccHHHHHHHcc
Q psy7809         175 CELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQII---GLCLGEIR-KDPNVDVATLSKQLI  246 (343)
Q Consensus       175 ~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il---~~~~~~~~-~~~~~~~~~la~~t~  246 (343)
                      +.|++.|+..     +..+++|++|+.+..+.+.+.+|....-.    ..++.   ...+.... ..++..++.|+..+.
T Consensus       145 naLLK~LEeP-----p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~  219 (620)
T PRK14954        145 NAFLKTLEEP-----PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ  219 (620)
T ss_pred             HHHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence            7888888754     33567777777788888898886432221    33332   22222222 234556788888887


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy7809         247 GYSGSDIRDLCQEIILI  263 (343)
Q Consensus       247 g~s~~di~~l~~~A~~~  263 (343)
                      | +.+++.+.++....+
T Consensus       220 G-dlr~al~eLeKL~~y  235 (620)
T PRK14954        220 G-SMRDAQSILDQVIAF  235 (620)
T ss_pred             C-CHHHHHHHHHHHHHh
Confidence            6 566666666654444

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.57  E-value=5.6e-14  Score=141.63  Aligned_cols=181  Identities=20%  Similarity=0.299  Sum_probs=114.6

Q ss_pred             cccccCCCCCCCcccccHHHHH---HHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQ---IFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~---~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ++..+.++.+|++++|++.+..   .+...+..            ....+++||||||||||++|+++++.++.+++.++
T Consensus        17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln   84 (725)
T PRK13341         17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN   84 (725)
T ss_pred             ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence            4455677899999999999885   45555532            23358999999999999999999999999988887


Q ss_pred             CCccccccccchHHHHHHHHHHHH-----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809         122 PSSLTSKHYGESEKLVRALFETAR-----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVL  196 (343)
Q Consensus       122 ~~~l~~~~~~~~~~~i~~~~~~a~-----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI  196 (343)
                      +....   .    +.++..+..+.     .....+|||||+|.+..         .....|+..++.       ..+++|
T Consensus        85 a~~~~---i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------~qQdaLL~~lE~-------g~IiLI  141 (725)
T PRK13341         85 AVLAG---V----KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------AQQDALLPWVEN-------GTITLI  141 (725)
T ss_pred             hhhhh---h----HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH---------HHHHHHHHHhcC-------ceEEEE
Confidence            64311   1    11223333221     12356999999998832         234456665542       256677


Q ss_pred             EecC-CC-CCCCHHHhccccCcch-------HHHHHhhhhcC-------C-CCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809         197 AATN-HP-WDLDEALKRRFEKRIS-------PIQIIGLCLGE-------I-RKDPNVDVATLSKQLIGYSGSDIRDLCQE  259 (343)
Q Consensus       197 ~ttn-~~-~~l~~~l~~rf~~~i~-------r~~il~~~~~~-------~-~~~~~~~~~~la~~t~g~s~~di~~l~~~  259 (343)
                      ++|+ .+ ..+++++++|+.....       ...+++..+..       . ...++..++.|+..+.| ..+.+.++++.
T Consensus       142 ~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~  220 (725)
T PRK13341        142 GATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL  220 (725)
T ss_pred             EecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            6553 33 4688999987532211       55666666542       1 11234446777777755 45666666655


Q ss_pred             HH
Q psy7809         260 II  261 (343)
Q Consensus       260 A~  261 (343)
                      |.
T Consensus       221 a~  222 (725)
T PRK13341        221 AV  222 (725)
T ss_pred             HH
Confidence            44

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.57  E-value=5.5e-14  Score=132.92  Aligned_cols=189  Identities=15%  Similarity=0.161  Sum_probs=120.4

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC--
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS--  123 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~--  123 (343)
                      +.+++++.+|++++|++.+++.+...+...           ..+.++|||||||+|||++|+++++.+........+.  
T Consensus         7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~   75 (367)
T PRK14970          7 SARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF   75 (367)
T ss_pred             HHHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            346788999999999999999999888642           3456899999999999999999999886522111100  


Q ss_pred             -----ccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809         124 -----SLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL  194 (343)
Q Consensus       124 -----~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  194 (343)
                           ++.. ........+..++..+..    ..+.||+|||+|.+..         ...+.|+..++..     +...+
T Consensus        76 ~~~~~~l~~-~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------~~~~~ll~~le~~-----~~~~~  140 (367)
T PRK14970         76 SFNIFELDA-ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------AAFNAFLKTLEEP-----PAHAI  140 (367)
T ss_pred             CcceEEecc-ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------HHHHHHHHHHhCC-----CCceE
Confidence                 0100 011112445566655432    2346999999998732         3456777777643     23456


Q ss_pred             EEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         195 VLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      +|++++.+..+.+++.+|+...-.    ..+   ++...+..... .++..++.|+..+.| +.+.+.+.++...
T Consensus       141 ~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~  214 (367)
T PRK14970        141 FILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV  214 (367)
T ss_pred             EEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            777777788888999886543211    233   33333333322 345567788888765 5666666666544

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.57  E-value=1.9e-13  Score=130.45  Aligned_cols=197  Identities=17%  Similarity=0.137  Sum_probs=120.9

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCccccc
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSK  128 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~  128 (343)
                      ..+.++|.++..+.|...+.....        ...+.+++|+||||+|||++++.+++++     +..+++++|....+.
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~   99 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR   99 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence            346789999999998887743211        1345679999999999999999999877     467888988654321


Q ss_pred             c-----------------cc-chHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809         129 H-----------------YG-ESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG  189 (343)
Q Consensus       129 ~-----------------~~-~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  189 (343)
                      +                 .+ .....+..++..... ..+.||+|||+|.+....     ....+..|+..++...    
T Consensus       100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-----~~~~l~~l~~~~~~~~----  170 (394)
T PRK00411        100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-----GNDVLYSLLRAHEEYP----  170 (394)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-----CchHHHHHHHhhhccC----
Confidence            0                 01 112333444443333 345799999999996211     1234556665554432    


Q ss_pred             CCCEEEEEecCCCC---CCCHHHhccccC-cch--------HHHHHhhhhcCC---CCCCcccHHHHHHHccCCC--HHH
Q psy7809         190 DKGVLVLAATNHPW---DLDEALKRRFEK-RIS--------PIQIIGLCLGEI---RKDPNVDVATLSKQLIGYS--GSD  252 (343)
Q Consensus       190 ~~~v~vI~ttn~~~---~l~~~l~~rf~~-~i~--------r~~il~~~~~~~---~~~~~~~~~~la~~t~g~s--~~d  252 (343)
                      ..++.+|+++|..+   .+++.+.+||.. .+.        ..+|++..+...   ....+..++.+++.+.+.+  .+.
T Consensus       171 ~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~  250 (394)
T PRK00411        171 GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV  250 (394)
T ss_pred             CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence            22678888888764   467788777643 222        555666555321   1223444677888775432  333


Q ss_pred             HHHHHHHHHHHHHHH
Q psy7809         253 IRDLCQEIILIAARE  267 (343)
Q Consensus       253 i~~l~~~A~~~a~~r  267 (343)
                      +.++|..|+..|..+
T Consensus       251 a~~ll~~a~~~a~~~  265 (394)
T PRK00411        251 AIDLLRRAGLIAERE  265 (394)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            446777777666543

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.56  E-value=1.6e-13  Score=127.24  Aligned_cols=184  Identities=19%  Similarity=0.176  Sum_probs=114.9

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~  119 (343)
                      .+.+++.+.+|++++|++++++.+...+...            ...+++|+||||+|||++++++++++..     .++.
T Consensus         6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~   73 (319)
T PRK00440          6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE   73 (319)
T ss_pred             ccchhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence            4668899999999999999999999887532            2236899999999999999999998742     3444


Q ss_pred             EcCCccccccccchHHHHHHHH-HHHHH-----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809         120 VLPSSLTSKHYGESEKLVRALF-ETARA-----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV  193 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~-~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v  193 (343)
                      +++.+...      ...+...+ ..+..     ..+.+|+|||+|.+..         .....|...++....     ..
T Consensus        74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------~~~~~L~~~le~~~~-----~~  133 (319)
T PRK00440         74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------DAQQALRRTMEMYSQ-----NT  133 (319)
T ss_pred             eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------HHHHHHHHHHhcCCC-----CC
Confidence            44332211      11122222 11211     2245999999998832         223456666654322     34


Q ss_pred             EEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         194 LVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       194 ~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      .+|.++|.+..+.+.+.+|+...-.       ...+++..+..... .++..+..++..+.| +.+.+.+.++.+.
T Consensus       134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~  208 (319)
T PRK00440        134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA  208 (319)
T ss_pred             eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            5666778777787888886553221       33445555544322 345567888888766 4555545554433

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.55  E-value=2e-13  Score=129.62  Aligned_cols=127  Identities=25%  Similarity=0.364  Sum_probs=85.8

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHh----ccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cccc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFK----GILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYG  131 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~  131 (343)
                      .|+|++.+++.+...+..+...-....    ....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|
T Consensus        72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG  151 (412)
T PRK05342         72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG  151 (412)
T ss_pred             HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence            389999999999776643211110000    11124578999999999999999999999999999999988753 4566


Q ss_pred             ch-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhccc
Q psy7809         132 ES-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDG  183 (343)
Q Consensus       132 ~~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~  183 (343)
                      .. ...+..++..+    ....++||||||||.+......     ......++..|++.|++
T Consensus       152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg  213 (412)
T PRK05342        152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG  213 (412)
T ss_pred             chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence            53 33344444321    2346789999999999764111     11123577888888875

>PRK06893 DNA replication initiation factor; Validated

Probab=99.54  E-value=2.7e-13  Score=119.70  Aligned_cols=182  Identities=15%  Similarity=0.130  Sum_probs=104.3

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL  125 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l  125 (343)
                      ..+..+|++++|.++.. .+......       ...  .....++||||||||||+|++++|+++   +....++.....
T Consensus         9 ~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~   78 (229)
T PRK06893          9 QIDDETLDNFYADNNLL-LLDSLRKN-------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS   78 (229)
T ss_pred             CCCcccccccccCChHH-HHHHHHHH-------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence            35667899998765432 11111111       111  122458999999999999999999886   334455544321


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL  205 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l  205 (343)
                      .        .....++...  ....+|+|||++.+.+...       ....|...++.....  ...++|++++..|..+
T Consensus        79 ~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~-------~~~~l~~l~n~~~~~--~~~illits~~~p~~l  139 (229)
T PRK06893         79 Q--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE-------WELAIFDLFNRIKEQ--GKTLLLISADCSPHAL  139 (229)
T ss_pred             h--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-------HHHHHHHHHHHHHHc--CCcEEEEeCCCChHHc
Confidence            1        0111222222  2347999999998854211       111233333322221  1134455566667665


Q ss_pred             C---HHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         206 D---EALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       206 ~---~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      +   +.+.+|+..-..          |..|++..+....+ .++..++.|+++..| +.+.+..++++.
T Consensus       140 ~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l  207 (229)
T PRK06893        140 SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL  207 (229)
T ss_pred             cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence            4   889987752221          88888876654432 355557889999977 677777777654

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.54  E-value=1.5e-13  Score=136.80  Aligned_cols=183  Identities=18%  Similarity=0.190  Sum_probs=115.6

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcCCcc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLPSSL  125 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~~~l  125 (343)
                      +.|+|.++.++.|..++...+..       ..+...++|+|+||||||++++.+..++          ...+++++|..+
T Consensus       755 D~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L  827 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV  827 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence            57899999999999888643321       1222345799999999999999998776          255789998654


Q ss_pred             ccccc----------------c-chHHHHHHHHHHHHH--cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         126 TSKHY----------------G-ESEKLVRALFETARA--RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       126 ~~~~~----------------~-~~~~~i~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                      ...+.                + .....+..+|.....  ....||+|||||.|...      ...++..|+.+...   
T Consensus       828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------~QDVLYnLFR~~~~---  898 (1164)
T PTZ00112        828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------TQKVLFTLFDWPTK---  898 (1164)
T ss_pred             CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------HHHHHHHHHHHhhc---
Confidence            32210                1 123445566655422  23469999999999652      12344455554321   


Q ss_pred             CCCCCCEEEEEecCC---CCCCCHHHhccccCc-ch--------HHHHHhhhhcCC-CCCCcccHHHHHHHccCCCHHHH
Q psy7809         187 GSGDKGVLVLAATNH---PWDLDEALKRRFEKR-IS--------PIQIIGLCLGEI-RKDPNVDVATLSKQLIGYSGSDI  253 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~---~~~l~~~l~~rf~~~-i~--------r~~il~~~~~~~-~~~~~~~~~~la~~t~g~s~~di  253 (343)
                        ...+++|||++|.   +..|++.+.+||... +.        ..+||+..+... ....+..+..+|+.++. ..+|+
T Consensus       899 --s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq-~SGDA  975 (1164)
T PTZ00112        899 --INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN-VSGDI  975 (1164)
T ss_pred             --cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-cCCHH
Confidence              1347899999986   445678888877643 22        667777666543 22344456777776653 34676


Q ss_pred             HHHH
Q psy7809         254 RDLC  257 (343)
Q Consensus       254 ~~l~  257 (343)
                      +.++
T Consensus       976 RKAL  979 (1164)
T PTZ00112        976 RKAL  979 (1164)
T ss_pred             HHHH
Confidence            6543

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.54  E-value=1.4e-13  Score=137.04  Aligned_cols=188  Identities=17%  Similarity=0.157  Sum_probs=119.3

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE---cC
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV---LP  122 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v---~~  122 (343)
                      +.+++.+.+|++|+|++.+++.|...+...           ..+..+||+||+|+|||++|+.+|+.+.+....-   .|
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c   74 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC   74 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            457889999999999999999998877642           3345689999999999999999999886432100   00


Q ss_pred             --------------Ccccc--ccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         123 --------------SSLTS--KHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       123 --------------~~l~~--~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                                    .++..  .........++.+...+..    ....|+||||+|.|.         ....+.|++.++
T Consensus        75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~---------~~a~naLLk~LE  145 (585)
T PRK14950         75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS---------TAAFNALLKTLE  145 (585)
T ss_pred             ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC---------HHHHHHHHHHHh
Confidence                          00000  0001112334444443322    224599999999883         245677888887


Q ss_pred             cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809         183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR  254 (343)
Q Consensus       183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~  254 (343)
                      ..     ...++||++++..+.+.+.+++|+...-.       ...++...+..... .++..+..|+..+.| +.+++.
T Consensus       146 ep-----p~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al  219 (585)
T PRK14950        146 EP-----PPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAE  219 (585)
T ss_pred             cC-----CCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence            54     23567777778888888888886543322       22233333333222 234457788888876 677776


Q ss_pred             HHHHH
Q psy7809         255 DLCQE  259 (343)
Q Consensus       255 ~l~~~  259 (343)
                      +.++.
T Consensus       220 ~~Lek  224 (585)
T PRK14950        220 NLLQQ  224 (585)
T ss_pred             HHHHH
Confidence            66664

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.54  E-value=4.4e-13  Score=128.79  Aligned_cols=194  Identities=19%  Similarity=0.235  Sum_probs=111.5

Q ss_pred             CCCCCCCccc-ccHH--HHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          50 DTGVGWDDIA-GLDN--VKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        50 ~~~~~~~~l~-G~~~--~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .+..+|++++ |...  +...+.++...+...+      ....++++||||+|+|||+|++++++++   +..++++++.
T Consensus       105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~  178 (445)
T PRK12422        105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGK------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE  178 (445)
T ss_pred             CccccccceeeCCcHHHHHHHHHHHHhcccccc------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence            5667899876 5332  2344444432221000      0234679999999999999999999876   5778888876


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      ++...........-...|.... ..+++|+|||++.+.+.....+....+++.+..          ....+|++++..|.
T Consensus       179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~----------~~k~IIlts~~~p~  247 (445)
T PRK12422        179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT----------EGKLIVISSTCAPQ  247 (445)
T ss_pred             HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH----------CCCcEEEecCCCHH
Confidence            6544322111111111233222 346799999999886432222222223332221          11344555544454


Q ss_pred             ---CCCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         204 ---DLDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       204 ---~l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                         .+++.+.+||...+.          |..|++..+..... .++..++.||....+ +.++|..++...+
T Consensus       248 ~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~  318 (445)
T PRK12422        248 DLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA  318 (445)
T ss_pred             HHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence               467899999864332          77888877766532 244446678887765 5666666555543

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.52  E-value=7.6e-13  Score=117.23  Aligned_cols=178  Identities=14%  Similarity=0.108  Sum_probs=105.0

Q ss_pred             CCCCCCCccc-c-cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCc
Q psy7809          50 DTGVGWDDIA-G-LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSS  124 (343)
Q Consensus        50 ~~~~~~~~l~-G-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~  124 (343)
                      .+..+|++++ | ...+...+......            ....+++||||+|||||+|++++++++.   ..+.++....
T Consensus        16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4456788876 4 55666666665432            2335899999999999999999998764   3455554433


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC-EEEEEecCCCC
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG-VLVLAATNHPW  203 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~-v~vI~ttn~~~  203 (343)
                      ...        ....+.+....  ..+|+|||++.+.+..........+++.+   ++       .++ .+++++++.|.
T Consensus        84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf~l~n~~---~e-------~g~~~li~ts~~~p~  143 (235)
T PRK08084         84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMAIFDLYNRI---LE-------SGRTRLLITGDRPPR  143 (235)
T ss_pred             Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHHHHHHHHHH---HH-------cCCCeEEEeCCCChH
Confidence            211        11122222211  26899999998854221111112222222   21       112 34555555555


Q ss_pred             C---CCHHHhccccCcch----------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         204 D---LDEALKRRFEKRIS----------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       204 ~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      .   +.+.++||+..-..          +..+++....... ..++.-++.|+++..| +.+.+..++++.
T Consensus       144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l  213 (235)
T PRK08084        144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL  213 (235)
T ss_pred             HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence            5   57999999853322          6677766444332 2345558899999987 688888877764

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.52  E-value=3.8e-13  Score=133.92  Aligned_cols=185  Identities=15%  Similarity=0.190  Sum_probs=123.8

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST----------  116 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----------  116 (343)
                      .+++.+.+|++|+|++.+++.|...+...           ..++.+|||||+|+|||++|+.+|+.+.+.          
T Consensus         8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg   76 (614)
T PRK14971          8 ARKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN   76 (614)
T ss_pred             HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence            46788899999999999999999888642           345678999999999999999999987632          


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     ++.+++.+      ......++.+...+...    ...|++|||+|.|.         ....+.|
T Consensus        77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls---------~~a~naL  141 (614)
T PRK14971         77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS---------QAAFNAF  141 (614)
T ss_pred             cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC---------HHHHHHH
Confidence                           22222211      11133455555444322    23599999999882         3457788


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcCCCCC-CcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGEIRKD-PNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~~~~~-~~~~~~~la~~t~g~s  249 (343)
                      ++.|+..     +...++|++|+.+..+-+.+++|+...-.    ..+   .++..+....+. +...+..|+..+.| +
T Consensus       142 LK~LEep-----p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d  215 (614)
T PRK14971        142 LKTLEEP-----PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G  215 (614)
T ss_pred             HHHHhCC-----CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence            8988864     34567788887888899999997544322    222   233333333322 33457888888866 6


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIILI  263 (343)
Q Consensus       250 ~~di~~l~~~A~~~  263 (343)
                      .+++.++++....+
T Consensus       216 lr~al~~Lekl~~y  229 (614)
T PRK14971        216 MRDALSIFDQVVSF  229 (614)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77776666665433

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.51  E-value=7.2e-13  Score=127.70  Aligned_cols=165  Identities=15%  Similarity=0.192  Sum_probs=104.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCccccccccchHH---HHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSKHYGESEK---LVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~~~~~~~~---~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      .++++|||++|+|||+|++++++++     +..++++++.++..........   .+..+...  ...+.+|+|||++.+
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l  218 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL  218 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence            4579999999999999999999865     4678888887776554433221   12222111  234579999999988


Q ss_pred             cCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC---CCHHHhccccCcch----------HHHHHhhhh
Q psy7809         161 CSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD---LDEALKRRFEKRIS----------PIQIIGLCL  227 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~~~i~----------r~~il~~~~  227 (343)
                      .....       ....|...++......   ..+||++...|..   +++.+.+||..-+.          |..|++..+
T Consensus       219 ~~k~~-------~~e~lf~l~N~~~~~~---k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~  288 (450)
T PRK14087        219 SYKEK-------TNEIFFTIFNNFIEND---KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI  288 (450)
T ss_pred             cCCHH-------HHHHHHHHHHHHHHcC---CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence            54221       1222333332222211   2334443344433   57899999975543          888888888


Q ss_pred             cCCC---CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809         228 GEIR---KDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       228 ~~~~---~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~  266 (343)
                      ....   ..++..++.||..+.| +.+.+..++.++...+..
T Consensus       289 ~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~  329 (450)
T PRK14087        289 KNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ  329 (450)
T ss_pred             HhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence            7643   2345567889999987 788888888877655543

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.51  E-value=8.6e-13  Score=114.66  Aligned_cols=140  Identities=24%  Similarity=0.328  Sum_probs=99.7

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS  124 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~  124 (343)
                      ....++.+++|+|.+.+++.|.+......       .+ .+.+++||+|++|||||++++++..++   |..++++...+
T Consensus        19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl-------~G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~   90 (249)
T PF05673_consen   19 KHPDPIRLDDLIGIERQKEALIENTEQFL-------QG-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED   90 (249)
T ss_pred             CCCCCCCHHHhcCHHHHHHHHHHHHHHHH-------cC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence            44557889999999999999987664332       22 578899999999999999999999876   56778887655


Q ss_pred             cccccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         125 LTSKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      +..         +..++..... ..+-|||+||+- +       +....-...|...|++--... +.+|+|.+|+|+.+
T Consensus        91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F-------e~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRH  152 (249)
T PF05673_consen   91 LGD---------LPELLDLLRDRPYKFILFCDDLS-F-------EEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRH  152 (249)
T ss_pred             hcc---------HHHHHHHHhcCCCCEEEEecCCC-C-------CCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhh
Confidence            543         4455555443 234699999973 1       112223345666666654433 77999999999998


Q ss_pred             CCCHHHhccc
Q psy7809         204 DLDEALKRRF  213 (343)
Q Consensus       204 ~l~~~l~~rf  213 (343)
                      .+++.+..|-
T Consensus       153 Lv~E~~~d~~  162 (249)
T PF05673_consen  153 LVPESFSDRE  162 (249)
T ss_pred             ccchhhhhcc
Confidence            8877666653

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.50  E-value=7.5e-13  Score=116.81  Aligned_cols=177  Identities=15%  Similarity=0.118  Sum_probs=105.0

Q ss_pred             ccCCCCCCCccc--ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          48 QTDTGVGWDDIA--GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        48 ~~~~~~~~~~l~--G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      ...++.+|++++  +.+.+...+..+...           .....+++|+||+|||||+||+++++++   +.+++++++
T Consensus        10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~   78 (227)
T PRK08903         10 GPPPPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA   78 (227)
T ss_pred             CCCChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence            345567899977  345666666665531           1345689999999999999999999875   567788877


Q ss_pred             CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC-
Q psy7809         123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH-  201 (343)
Q Consensus       123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~-  201 (343)
                      .++...            +  .......+|+|||+|.+..         .....|...++.....   ...++|.+++. 
T Consensus        79 ~~~~~~------------~--~~~~~~~~liiDdi~~l~~---------~~~~~L~~~~~~~~~~---~~~~vl~~~~~~  132 (227)
T PRK08903         79 ASPLLA------------F--DFDPEAELYAVDDVERLDD---------AQQIALFNLFNRVRAH---GQGALLVAGPAA  132 (227)
T ss_pred             HHhHHH------------H--hhcccCCEEEEeChhhcCc---------hHHHHHHHHHHHHHHc---CCcEEEEeCCCC
Confidence            654311            1  1122357999999998732         1122333333322211   13334444443 


Q ss_pred             C--CCCCHHHhccccC--cch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809         202 P--WDLDEALKRRFEK--RIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIIL  262 (343)
Q Consensus       202 ~--~~l~~~l~~rf~~--~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~  262 (343)
                      +  ..+.+.+.+||..  .+.        +..+++........ .++.-++.|+....| +.+++..+++....
T Consensus       133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~  205 (227)
T PRK08903        133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDR  205 (227)
T ss_pred             HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence            3  2356778888743  332        33445444433322 244457778887766 78888888776433

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.50  E-value=7.3e-13  Score=125.15  Aligned_cols=145  Identities=24%  Similarity=0.354  Sum_probs=93.3

Q ss_pred             cccccHHHHHHHHHHHhccccChHH----H--hccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-cc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQL----F--KGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KH  129 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~----~--~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~  129 (343)
                      .++|++++++.+...+......-..    .  ........++||+||||||||++|+++|..++.+|..+++..+.. .|
T Consensus        78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy  157 (413)
T TIGR00382        78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY  157 (413)
T ss_pred             eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence            3699999999998766321111000    0  000112468999999999999999999999999999999887653 45


Q ss_pred             ccch-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCC--------CCCC
Q psy7809         130 YGES-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTG--------SGDK  191 (343)
Q Consensus       130 ~~~~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~--------~~~~  191 (343)
                      +|.. ...+..++..+    ....++||||||+|.+......     ......+++.|++.|++....        ....
T Consensus       158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~  237 (413)
T TIGR00382       158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ  237 (413)
T ss_pred             ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence            5653 34444444432    2345789999999999763111     111125778888888754311        1123


Q ss_pred             CEEEEEecCC
Q psy7809         192 GVLVLAATNH  201 (343)
Q Consensus       192 ~v~vI~ttn~  201 (343)
                      +.++|.|+|-
T Consensus       238 ~~i~i~TsNi  247 (413)
T TIGR00382       238 EFIQIDTSNI  247 (413)
T ss_pred             CeEEEEcCCc
Confidence            5677777775

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK08727 hypothetical protein; Validated

Probab=99.49  E-value=2.7e-12  Score=113.62  Aligned_cols=178  Identities=15%  Similarity=0.175  Sum_probs=101.4

Q ss_pred             CCCCCCCccccc-HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809          50 DTGVGWDDIAGL-DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL  125 (343)
Q Consensus        50 ~~~~~~~~l~G~-~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l  125 (343)
                      .+..+|+++++. .+....+......            .....++|+||+|||||+|+++++.++   +..+.+++..++
T Consensus        13 ~~~~~f~~f~~~~~n~~~~~~~~~~~------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~   80 (233)
T PRK08727         13 PSDQRFDSYIAAPDGLLAQLQALAAG------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA   80 (233)
T ss_pred             CCcCChhhccCCcHHHHHHHHHHHhc------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence            445678887654 4444433332211            223469999999999999999998765   455566654432


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec-CCCCC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT-NHPWD  204 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt-n~~~~  204 (343)
                      ..        .+...+...  ....+|+|||++.+.......       ..+...++.....    +..+|+|+ ..|..
T Consensus        81 ~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~~~-------~~lf~l~n~~~~~----~~~vI~ts~~~p~~  139 (233)
T PRK08727         81 AG--------RLRDALEAL--EGRSLVALDGLESIAGQREDE-------VALFDFHNRARAA----GITLLYTARQMPDG  139 (233)
T ss_pred             hh--------hHHHHHHHH--hcCCEEEEeCcccccCChHHH-------HHHHHHHHHHHHc----CCeEEEECCCChhh
Confidence            21        223333333  344799999999886432211       1222222222111    22344444 45655


Q ss_pred             C---CHHHhccccCcch----------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         205 L---DEALKRRFEKRIS----------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       205 l---~~~l~~rf~~~i~----------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      +   ++.+.|||.....          +..+++....... ..++..++.|++.+.| +.+.+.++++...
T Consensus       140 l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~  209 (233)
T PRK08727        140 LALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLD  209 (233)
T ss_pred             hhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            4   6899999754432          7778876554322 2345567888988875 4455555555443

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.49  E-value=1.2e-12  Score=130.63  Aligned_cols=227  Identities=16%  Similarity=0.224  Sum_probs=132.6

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------  113 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------  113 (343)
                      +.+.....+.+|++++|++...+.+...+..            ..+.+++|+||+|||||++|+.+....          
T Consensus       142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~  209 (615)
T TIGR02903       142 KSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE  209 (615)
T ss_pred             hHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence            4555566788999999999988887665532            234579999999999999999998655          


Q ss_pred             CCceEEEcCCccccc-------cccchHHH----HHHHHHH----------HHHcCCcEEEEcccccccCCCCchhhhHH
Q psy7809         114 GSTFFNVLPSSLTSK-------HYGESEKL----VRALFET----------ARARAPAVIFIDEVDAFCSGSREHEATRR  172 (343)
Q Consensus       114 ~~~~~~v~~~~l~~~-------~~~~~~~~----i~~~~~~----------a~~~~p~il~iDeid~l~~~~~~~~~~~~  172 (343)
                      +.+|+.++|..+...       ..+.....    ....+..          ......++|||||++.|-         ..
T Consensus       210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld---------~~  280 (615)
T TIGR02903       210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD---------PL  280 (615)
T ss_pred             CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC---------HH
Confidence            356888888765210       11110000    0000100          012234699999998883         23


Q ss_pred             HHHHHhhhcccCC-----------------------CCCCCCCEEEEE-ecCCCCCCCHHHhccccCcch-------HHH
Q psy7809         173 VRCELLSHMDGVG-----------------------TGSGDKGVLVLA-ATNHPWDLDEALKRRFEKRIS-------PIQ  221 (343)
Q Consensus       173 ~~~~ll~~l~~~~-----------------------~~~~~~~v~vI~-ttn~~~~l~~~l~~rf~~~i~-------r~~  221 (343)
                      ....|+..++.-.                       .......+++|+ |++.++.+++++++||.....       ...
T Consensus       281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~  360 (615)
T TIGR02903       281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL  360 (615)
T ss_pred             HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence            3444444443210                       000122355554 556788899999998764432       666


Q ss_pred             HHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccC
Q psy7809         222 IIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVA  300 (343)
Q Consensus       222 il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (343)
                      |++..+..... .++.-++.|+..+.  .++...+++..+...+..+.....                            
T Consensus       361 Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~----------------------------  410 (615)
T TIGR02903       361 IVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAG----------------------------  410 (615)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhc----------------------------
Confidence            77766665422 22334455666553  344444555566555444432100                            


Q ss_pred             CCCCCcccccHHHHHHHHHhcC
Q psy7809         301 PLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       301 ~~~~~~~~lt~~df~~Al~~~~  322 (343)
                       .....+.|+.+|+.+++..-+
T Consensus       411 -~~~~~~~I~~edv~~~l~~~r  431 (615)
T TIGR02903       411 -KENDKVTITQDDVYEVIQISR  431 (615)
T ss_pred             -cCCCCeeECHHHHHHHhCCCc
Confidence             001123499999999998765

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.49  E-value=5.2e-13  Score=117.62  Aligned_cols=182  Identities=16%  Similarity=0.197  Sum_probs=109.7

Q ss_pred             CCCCCccc--ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809          52 GVGWDDIA--GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT  126 (343)
Q Consensus        52 ~~~~~~l~--G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~  126 (343)
                      ..+|++++  +...+.+.+..++..            ..+.+++|+||+|||||++|+++++++   +.+++++++..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        11 DPTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             chhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            45677776  466788888876531            345789999999999999999999876   4678888887765


Q ss_pred             cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809         127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD  206 (343)
Q Consensus       127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~  206 (343)
                      ...        ..++...  ..+.+|+|||+|.+....       .....+...++.....   ...+|++++..+..++
T Consensus        79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~~---~~~iIits~~~~~~~~  138 (226)
T TIGR03420        79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQP-------EWQEALFHLYNRVREA---GGRLLIAGRAAPAQLP  138 (226)
T ss_pred             HhH--------HHHHhhc--ccCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHc---CCeEEEECCCChHHCC
Confidence            321        2223222  234699999999884311       0112233333222111   1234444443444332


Q ss_pred             ---HHHhcccc--Ccch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809         207 ---EALKRRFE--KRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       207 ---~~l~~rf~--~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~  266 (343)
                         +.+.+|+.  ..+.        +..+++.+...... .++..+..|+....| +.+++.++++.+...+..
T Consensus       139 ~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~  211 (226)
T TIGR03420       139 LRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLA  211 (226)
T ss_pred             cccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence               77887764  3332        55666655443322 244446778887655 889999988876654443

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.49  E-value=6.3e-13  Score=116.38  Aligned_cols=192  Identities=17%  Similarity=0.266  Sum_probs=115.8

Q ss_pred             CCCCCCCccc-c--cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809          50 DTGVGWDDIA-G--LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL  121 (343)
Q Consensus        50 ~~~~~~~~l~-G--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~  121 (343)
                      .|..+|++++ |  ...+...+..+...+.          .....++||||+|+|||+|++++++++     +..+++++
T Consensus         2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~   71 (219)
T PF00308_consen    2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS   71 (219)
T ss_dssp             -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred             CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence            3567899875 5  3455555555544321          233568999999999999999999875     56688888


Q ss_pred             CCccccccccchHH-HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         122 PSSLTSKHYGESEK-LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       122 ~~~l~~~~~~~~~~-~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      +.++...+...... .+..+...  .....+|+||+++.+.+.       ......|...++.+...   ++.+|+++..
T Consensus        72 ~~~f~~~~~~~~~~~~~~~~~~~--~~~~DlL~iDDi~~l~~~-------~~~q~~lf~l~n~~~~~---~k~li~ts~~  139 (219)
T PF00308_consen   72 AEEFIREFADALRDGEIEEFKDR--LRSADLLIIDDIQFLAGK-------QRTQEELFHLFNRLIES---GKQLILTSDR  139 (219)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHH--HCTSSEEEEETGGGGTTH-------HHHHHHHHHHHHHHHHT---TSEEEEEESS
T ss_pred             HHHHHHHHHHHHHcccchhhhhh--hhcCCEEEEecchhhcCc-------hHHHHHHHHHHHHHHhh---CCeEEEEeCC
Confidence            77766543322211 12222221  124479999999998531       12333444444333221   2455666656


Q ss_pred             CCCC---CCHHHhccccCcch----------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809         201 HPWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       201 ~~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a  264 (343)
                      .|..   +++.+.+||..-+.          |..|++..+...... ++.-++.|++...+ +.++|..++++-...+
T Consensus       140 ~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~  216 (219)
T PF00308_consen  140 PPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA  216 (219)
T ss_dssp             -TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred             CCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence            6654   56889999876554          888888877766433 34446788888866 7888888877655443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.47  E-value=2e-12  Score=119.55  Aligned_cols=166  Identities=19%  Similarity=0.237  Sum_probs=108.9

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--------eEEEcCCcc
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--------FFNVLPSSL  125 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--------~~~v~~~~l  125 (343)
                      +|++++|++.+++.+...+...           ..++.+||+||+|+|||++|+.+|+.+.+.        ++.+...+ 
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~-   69 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN-   69 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence            6899999999999999887532           455678999999999999999999987432        22332210 


Q ss_pred             ccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         126 TSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                       +.  ......++.+...+.    .....|++||++|.+         .....+.|++.++..     +.++++|.+|+.
T Consensus        70 -~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m---------~~~a~naLLK~LEep-----p~~t~~il~~~~  132 (313)
T PRK05564         70 -KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM---------TEQAQNAFLKTIEEP-----PKGVFIILLCEN  132 (313)
T ss_pred             -CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc---------CHHHHHHHHHHhcCC-----CCCeEEEEEeCC
Confidence             11  112233555444332    223469999999888         345677899999854     446777777788


Q ss_pred             CCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCC
Q psy7809         202 PWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGY  248 (343)
Q Consensus       202 ~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~  248 (343)
                      ++.+.+.++||+...-.    ..++..+.-......+...+..++..+.|-
T Consensus       133 ~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~  183 (313)
T PRK05564        133 LEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGI  183 (313)
T ss_pred             hHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCC
Confidence            99999999997753332    344433333222222344466777777663

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.47  E-value=4.2e-12  Score=119.02  Aligned_cols=183  Identities=20%  Similarity=0.144  Sum_probs=117.6

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE-E---------
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF-N---------  119 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~-~---------  119 (343)
                      -.+.++++|+|++.+++.|...+...           +.+..+||+||+|+||+++|.++|+.+-+.-- .         
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~   81 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT   81 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence            35678999999999999999888653           45667999999999999999999988743110 0         


Q ss_pred             -E----cC-----------Cccccc-----ccc------chHHHHHHHHHHH----HHcCCcEEEEcccccccCCCCchh
Q psy7809         120 -V----LP-----------SSLTSK-----HYG------ESEKLVRALFETA----RARAPAVIFIDEVDAFCSGSREHE  168 (343)
Q Consensus       120 -v----~~-----------~~l~~~-----~~~------~~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~  168 (343)
                       +    .|           +++..-     ..+      -....++.+...+    ....|.|++|||+|.+        
T Consensus        82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------  153 (365)
T PRK07471         82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------  153 (365)
T ss_pred             cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence             0    00           111100     000      0122344444333    2345679999999988        


Q ss_pred             hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHH
Q psy7809         169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQ  244 (343)
Q Consensus       169 ~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~  244 (343)
                       .....+.|++.++..     +.+.++|.+|+.++.+.+.+++|+...-.    ..++............+..+..++..
T Consensus       154 -~~~aanaLLK~LEep-----p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~  227 (365)
T PRK07471        154 -NANAANALLKVLEEP-----PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAAL  227 (365)
T ss_pred             -CHHHHHHHHHHHhcC-----CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence             346677888888754     33678888999999999999997654433    55555444433222222233567777


Q ss_pred             ccCCCHHHHHHHHH
Q psy7809         245 LIGYSGSDIRDLCQ  258 (343)
Q Consensus       245 t~g~s~~di~~l~~  258 (343)
                      +.| +++....+++
T Consensus       228 s~G-sp~~Al~ll~  240 (365)
T PRK07471        228 AEG-SVGRALRLAG  240 (365)
T ss_pred             cCC-CHHHHHHHhc
Confidence            877 5555545543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.45  E-value=1.6e-12  Score=105.52  Aligned_cols=137  Identities=38%  Similarity=0.571  Sum_probs=88.0

Q ss_pred             ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHH
Q psy7809          60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKL  136 (343)
Q Consensus        60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~  136 (343)
                      |++.+.+.+...+..            ....+++|+||||+|||++++.++..+   +.+++.+++..............
T Consensus         2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   69 (151)
T cd00009           2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG   69 (151)
T ss_pred             chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence            566777777766643            245689999999999999999999998   88899998877654332221111


Q ss_pred             ---HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-CCCCCEEEEEecCCCC--CCCHHHh
Q psy7809         137 ---VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-SGDKGVLVLAATNHPW--DLDEALK  210 (343)
Q Consensus       137 ---i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~v~vI~ttn~~~--~l~~~l~  210 (343)
                         ....+.......+.+|+|||++.+..         .....++..+...... ....++.+|++++...  .+++.+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~  140 (151)
T cd00009          70 HFLVRLLFELAEKAKPGVLFIDEIDSLSR---------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALY  140 (151)
T ss_pred             hhhHhHHHHhhccCCCeEEEEeChhhhhH---------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHH
Confidence               11222333445678999999987721         1222333333332211 0123678888888876  6778888


Q ss_pred             ccccCcc
Q psy7809         211 RRFEKRI  217 (343)
Q Consensus       211 ~rf~~~i  217 (343)
                      +||..++
T Consensus       141 ~r~~~~i  147 (151)
T cd00009         141 DRLDIRI  147 (151)
T ss_pred             hhhccEe
Confidence            8886543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05642 DNA replication initiation factor; Validated

Probab=99.44  E-value=5.7e-12  Score=111.56  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=95.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR  165 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~  165 (343)
                      ..+++|+||+|+|||+|++++++++   +..+++++..++...        ...+.+....  ..+|+|||++.+.+...
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~~  114 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKAD  114 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCChH
Confidence            3678999999999999999999765   567778877665532        1222222222  26999999998854221


Q ss_pred             chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC---CHHHhccccCcch----------HHHHHhhhhcCCCC
Q psy7809         166 EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL---DEALKRRFEKRIS----------PIQIIGLCLGEIRK  232 (343)
Q Consensus       166 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l---~~~l~~rf~~~i~----------r~~il~~~~~~~~~  232 (343)
                      .       ...|...++.+..   .++.+|++++..|..+   .+.+++||..-+.          |..+++.......+
T Consensus       115 ~-------~~~Lf~l~n~~~~---~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~  184 (234)
T PRK05642        115 W-------EEALFHLFNRLRD---SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL  184 (234)
T ss_pred             H-------HHHHHHHHHHHHh---cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence            1       1233333333222   2255666666666443   5889999843332          77777744433322


Q ss_pred             -CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         233 -DPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       233 -~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                       .++.-++.|++...+ +.+.+..+++.-.
T Consensus       185 ~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~  213 (234)
T PRK05642        185 HLTDEVGHFILTRGTR-SMSALFDLLERLD  213 (234)
T ss_pred             CCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence             345557888888877 6788877776544

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=2.5e-12  Score=120.36  Aligned_cols=193  Identities=19%  Similarity=0.197  Sum_probs=120.9

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----eEEEcCCccccccc-
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----FFNVLPSSLTSKHY-  130 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----~~~v~~~~l~~~~~-  130 (343)
                      .+.+.++.++++..++......        ..|.++++||+||||||.+++.++.++...     +++++|....+.+. 
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i   89 (366)
T COG1474          18 ELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV   89 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence            3889999999999887543321        345579999999999999999999988544     89999977654321 


Q ss_pred             --------------cc-hHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809         131 --------------GE-SEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL  194 (343)
Q Consensus       131 --------------~~-~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  194 (343)
                                    |. ....+..+++.... ...-||+|||+|.|....+      .++..|+......     ..++.
T Consensus        90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------~~LY~L~r~~~~~-----~~~v~  158 (366)
T COG1474          90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------EVLYSLLRAPGEN-----KVKVS  158 (366)
T ss_pred             HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------hHHHHHHhhcccc-----ceeEE
Confidence                          11 12223333333333 2345999999999976433      4555666655443     33789


Q ss_pred             EEEecCCCC---CCCHHHhccccCcc-h--------HHHHHhhhhcCC---CCCCcccHHHHHHHc---cCCCHHHHHHH
Q psy7809         195 VLAATNHPW---DLDEALKRRFEKRI-S--------PIQIIGLCLGEI---RKDPNVDVATLSKQL---IGYSGSDIRDL  256 (343)
Q Consensus       195 vI~ttn~~~---~l~~~l~~rf~~~i-~--------r~~il~~~~~~~---~~~~~~~~~~la~~t---~g~s~~di~~l  256 (343)
                      +|+.+|..+   .+++.+.++|...- .        -.+|++......   ....+.-+..+|..+   .| ..+---++
T Consensus       159 vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidi  237 (366)
T COG1474         159 IIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDI  237 (366)
T ss_pred             EEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHH
Confidence            999999874   57888888554322 2        444444444322   111222233344333   33 22323368


Q ss_pred             HHHHHHHHHHHHH
Q psy7809         257 CQEIILIAAREVI  269 (343)
Q Consensus       257 ~~~A~~~a~~r~~  269 (343)
                      |+.|...|.++..
T Consensus       238 lr~A~eiAe~~~~  250 (366)
T COG1474         238 LRRAGEIAEREGS  250 (366)
T ss_pred             HHHHHHHHHhhCC
Confidence            8899988887654

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.43  E-value=2.7e-12  Score=130.16  Aligned_cols=201  Identities=17%  Similarity=0.182  Sum_probs=126.5

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc-----ccc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK-----HYG  131 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~-----~~~  131 (343)
                      .|+||+++++.|...+......  +. .-.+|..++||+||||||||++|+++|..++.+++.++|+++...     .+|
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~g--l~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG  535 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAG--LG-HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG  535 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhcc--cc-CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence            4799999999999988643110  00 001344579999999999999999999999999999998876432     111


Q ss_pred             ch----H-HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-CC-----CCCCCEEEEEecC
Q psy7809         132 ES----E-KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-TG-----SGDKGVLVLAATN  200 (343)
Q Consensus       132 ~~----~-~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~-----~~~~~v~vI~ttn  200 (343)
                      ..    . ..-..+.........+||||||||++         ...+.+.|++.|+.-. ..     ..-.++++|+|||
T Consensus       536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka---------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN  606 (758)
T PRK11034        536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA---------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN  606 (758)
T ss_pred             CCCCcccccccchHHHHHHhCCCcEEEeccHhhh---------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence            10    0 00111223334455689999999988         3467788888886321 11     0124788999998


Q ss_pred             CC-------------------------CCCCHHHhccccCcch--------HHHHHhhhhcC-------CCCC---Cccc
Q psy7809         201 HP-------------------------WDLDEALKRRFEKRIS--------PIQIIGLCLGE-------IRKD---PNVD  237 (343)
Q Consensus       201 ~~-------------------------~~l~~~l~~rf~~~i~--------r~~il~~~~~~-------~~~~---~~~~  237 (343)
                      .-                         ..+.|.++.|++..+.        ...|+...+..       ....   ++.-
T Consensus       607 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~  686 (758)
T PRK11034        607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEA  686 (758)
T ss_pred             cCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHH
Confidence            32                         1245777788886654        33344333321       1111   2333


Q ss_pred             HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         238 VATLSKQL--IGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       238 ~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      ++.|+...  ..|-.+.|+.++++-+...+.+..
T Consensus       687 ~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i  720 (758)
T PRK11034        687 RDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL  720 (758)
T ss_pred             HHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            55666543  234578899998888888877654

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.43  E-value=7.3e-12  Score=117.18  Aligned_cols=195  Identities=16%  Similarity=0.196  Sum_probs=123.3

Q ss_pred             ccCCCCCCCcccccH---HHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEE
Q psy7809          48 QTDTGVGWDDIAGLD---NVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFN  119 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~---~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~  119 (343)
                      .-.+..+|++++.-.   -+......+...+-          ...+.++||||.|+|||+|+++++++..     ..+++
T Consensus        79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g----------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y  148 (408)
T COG0593          79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPG----------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY  148 (408)
T ss_pred             cCCCCCchhheeeCCchHHHHHHHHHHHhccC----------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe
Confidence            446677888865422   22333333332221          2456799999999999999999998763     35777


Q ss_pred             EcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ++...+...++......-..-|+.-.  .-.+++|||++.+.++....+....+.+.+..          .++-+|+.+-
T Consensus       149 ~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~----------~~kqIvltsd  216 (408)
T COG0593         149 LTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE----------NGKQIVLTSD  216 (408)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh----------cCCEEEEEcC
Confidence            77766665544443333333444444  34799999999997654433444444444433          1245666666


Q ss_pred             CCCCCC---CHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDL---DEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       200 n~~~~l---~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      ..|..+   .+.++|||...+.          |..||+.......+ .++.-+..+|..... +.++|..++.+....|.
T Consensus       217 r~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~  295 (408)
T COG0593         217 RPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFAL  295 (408)
T ss_pred             CCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence            667665   4899999987765          88888886655533 345557788888755 67777776666555554

>PRK06620 hypothetical protein; Validated

Probab=99.43  E-value=9.8e-12  Score=108.36  Aligned_cols=169  Identities=17%  Similarity=0.186  Sum_probs=100.3

Q ss_pred             ccCCCCCCCccc-cc--HHHHHHHHHHHhccccChHHHhccCCC-CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          48 QTDTGVGWDDIA-GL--DNVKQIFKETLLLPKLMPQLFKGILRP-WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        48 ~~~~~~~~~~l~-G~--~~~k~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      ...+..+|++++ |.  +.+...+.+....+         ...+ ...++||||+|||||+|++++++..+..++.  ..
T Consensus         8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~   76 (214)
T PRK06620          8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DI   76 (214)
T ss_pred             CCCCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hh
Confidence            345667888865 33  34555555543211         0122 2679999999999999999999887643222  11


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      ..           ....+     ....+|+|||+|.+     +...   +. .+++.+.   .   .+..++|+++..|.
T Consensus        77 ~~-----------~~~~~-----~~~d~lliDdi~~~-----~~~~---lf-~l~N~~~---e---~g~~ilits~~~p~  125 (214)
T PRK06620         77 FF-----------NEEIL-----EKYNAFIIEDIENW-----QEPA---LL-HIFNIIN---E---KQKYLLLTSSDKSR  125 (214)
T ss_pred             hh-----------chhHH-----hcCCEEEEeccccc-----hHHH---HH-HHHHHHH---h---cCCEEEEEcCCCcc
Confidence            10           00111     12379999999855     1111   11 2222221   1   22466777776665


Q ss_pred             C--CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         204 D--LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       204 ~--l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      .  + +.+++|+...+.          +..+++..+....+ .++.-++.|+....| +.+.+..+++..
T Consensus       126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l  193 (214)
T PRK06620        126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI  193 (214)
T ss_pred             ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence            4  5 789999874432          67777776664322 345557889999877 677777777763

>KOG0991|consensus

Probab=99.41  E-value=1.5e-12  Score=110.83  Aligned_cols=141  Identities=18%  Similarity=0.226  Sum_probs=97.1

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceE
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFF  118 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~  118 (343)
                      ..+++++.+..+.||+|.++....|.-+...            ....+++|.||||+||||-+.++|+++-.     -+.
T Consensus        15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL   82 (333)
T KOG0991|consen   15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL   82 (333)
T ss_pred             chHHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence            3488999999999999999999999866643            34468999999999999999999998732     356


Q ss_pred             EEcCCccccccccchHHHHHHHHHHHHH-cCC---cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809         119 NVLPSSLTSKHYGESEKLVRALFETARA-RAP---AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL  194 (343)
Q Consensus       119 ~v~~~~l~~~~~~~~~~~i~~~~~~a~~-~~p---~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  194 (343)
                      +++.++-.+-.  -....++. |..-+- ..|   .|++|||+|++..         ..+.+|...|+-++.     ...
T Consensus        83 ELNASdeRGID--vVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~---------gAQQAlRRtMEiyS~-----ttR  145 (333)
T KOG0991|consen   83 ELNASDERGID--VVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTA---------GAQQALRRTMEIYSN-----TTR  145 (333)
T ss_pred             hccCccccccH--HHHHHHHH-HHHhhccCCCCceeEEEeeccchhhh---------HHHHHHHHHHHHHcc-----cch
Confidence            66666543321  11222222 222222 222   3999999999842         234455666655533     346


Q ss_pred             EEEecCCCCCCCHHHhccc
Q psy7809         195 VLAATNHPWDLDEALKRRF  213 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~rf  213 (343)
                      +..++|....+-+.+.||+
T Consensus       146 FalaCN~s~KIiEPIQSRC  164 (333)
T KOG0991|consen  146 FALACNQSEKIIEPIQSRC  164 (333)
T ss_pred             hhhhhcchhhhhhhHHhhh
Confidence            7888898888888888843

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.40  E-value=1.2e-11  Score=115.32  Aligned_cols=184  Identities=15%  Similarity=0.096  Sum_probs=114.7

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-------eEEE-c
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------FFNV-L  121 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------~~~v-~  121 (343)
                      -.+..+++|+|++++.+.|...+...           ..+..+||+||+|+|||++|+.+|+.+.+.       .... .
T Consensus        17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~   85 (351)
T PRK09112         17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP   85 (351)
T ss_pred             CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence            45788999999999999999888643           455679999999999999999999988551       1000 0


Q ss_pred             ---C-----------Cccc---cc--c------ccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHH
Q psy7809         122 ---P-----------SSLT---SK--H------YGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRR  172 (343)
Q Consensus       122 ---~-----------~~l~---~~--~------~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~  172 (343)
                         |           +++.   ..  .      ..-....++.+.....    .....|++|||+|.|         ...
T Consensus        86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l---------~~~  156 (351)
T PRK09112         86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM---------NRN  156 (351)
T ss_pred             CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc---------CHH
Confidence               1           0110   00  0      0001223333333222    234569999999988         335


Q ss_pred             HHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-----HHHHHhhhhcCCCC---CCcccHHHHHHH
Q psy7809         173 VRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-----PIQIIGLCLGEIRK---DPNVDVATLSKQ  244 (343)
Q Consensus       173 ~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-----r~~il~~~~~~~~~---~~~~~~~~la~~  244 (343)
                      ..+.|++.++..     +.+.++|..|+.++.+.+.+++|+. .+.     ..++....- ....   .++..+..++..
T Consensus       157 aanaLLk~LEEp-----p~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~-~~~~~~~~~~~~~~~i~~~  229 (351)
T PRK09112        157 AANAILKTLEEP-----PARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALS-HLGSSQGSDGEITEALLQR  229 (351)
T ss_pred             HHHHHHHHHhcC-----CCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHH-HhhcccCCCHHHHHHHHHH
Confidence            567788888764     3356777777888989999999874 333     333332222 2111   123346678888


Q ss_pred             ccCCCHHHHHHHHHHHH
Q psy7809         245 LIGYSGSDIRDLCQEII  261 (343)
Q Consensus       245 t~g~s~~di~~l~~~A~  261 (343)
                      +.| +++...++++...
T Consensus       230 s~G-~pr~Al~ll~~~~  245 (351)
T PRK09112        230 SKG-SVRKALLLLNYGG  245 (351)
T ss_pred             cCC-CHHHHHHHHhcCc
Confidence            877 5555555554443

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.40  E-value=6.1e-12  Score=107.71  Aligned_cols=140  Identities=28%  Similarity=0.382  Sum_probs=99.7

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      +...+.+.+.+|+|.+.+++.|.+-...       |..+ .+.++|||+|..|||||+|++++-+++   +..+++|+..
T Consensus        51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~  122 (287)
T COG2607          51 VPDPDPIDLADLVGVDRQKEALVRNTEQ-------FAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE  122 (287)
T ss_pred             CCCCCCcCHHHHhCchHHHHHHHHHHHH-------HHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence            4455668899999999999998865543       2222 577899999999999999999998877   4678888876


Q ss_pred             ccccccccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      ++..         +-.++...+... +-|||+|++-        .+........|-..|++--... +.+|+|.+|+|+.
T Consensus       123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS--------Fe~gd~~yK~LKs~LeG~ve~r-P~NVl~YATSNRR  184 (287)
T COG2607         123 DLAT---------LPDLVELLRARPEKFILFCDDLS--------FEEGDDAYKALKSALEGGVEGR-PANVLFYATSNRR  184 (287)
T ss_pred             HHhh---------HHHHHHHHhcCCceEEEEecCCC--------CCCCchHHHHHHHHhcCCcccC-CCeEEEEEecCCc
Confidence            6653         444555554432 4599999982        1122233445555666544433 6799999999999


Q ss_pred             CCCCHHHhcc
Q psy7809         203 WDLDEALKRR  212 (343)
Q Consensus       203 ~~l~~~l~~r  212 (343)
                      +.|++.+..+
T Consensus       185 HLl~e~~~dn  194 (287)
T COG2607         185 HLLPEDMKDN  194 (287)
T ss_pred             ccccHhhhhC
Confidence            9988777763

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.39  E-value=8e-12  Score=127.79  Aligned_cols=200  Identities=20%  Similarity=0.216  Sum_probs=129.0

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc-------
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK-------  128 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~-------  128 (343)
                      +.|+||+++++.+...+......   .....+|..++||+||+|||||++|+++|..++.+++.++++++...       
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li  530 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI  530 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence            45789999999988877642110   00001233468999999999999999999999999999998876532       


Q ss_pred             -----cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC------CCCCCEEEEE
Q psy7809         129 -----HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG------SGDKGVLVLA  197 (343)
Q Consensus       129 -----~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~v~vI~  197 (343)
                           |+|...  ...+.........+||+|||+|.+         ...+.+.|++.++.-.-.      -.-.+.+||+
T Consensus       531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka---------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~  599 (731)
T TIGR02639       531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA---------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIM  599 (731)
T ss_pred             cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc---------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence                 112111  122333444556689999999987         346777888888742110      0123678999


Q ss_pred             ecCCCC-------------------------CCCHHHhccccCcch--------HHHHHhhhhcCC-------C--C-CC
Q psy7809         198 ATNHPW-------------------------DLDEALKRRFEKRIS--------PIQIIGLCLGEI-------R--K-DP  234 (343)
Q Consensus       198 ttn~~~-------------------------~l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~--~-~~  234 (343)
                      |||...                         .+.|.++.|++..+.        ...|++..+...       .  + .+
T Consensus       600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~  679 (731)
T TIGR02639       600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELT  679 (731)
T ss_pred             CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeC
Confidence            988632                         145677778886664        445555554321       1  1 13


Q ss_pred             cccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         235 NVDVATLSKQ--LIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       235 ~~~~~~la~~--t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      +..++.|+..  ...|-.+.|+.++++-+..++.+..
T Consensus       680 ~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~  716 (731)
T TIGR02639       680 DDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI  716 (731)
T ss_pred             HHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence            3345567764  3456678999999988888877654

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.38  E-value=7e-12  Score=115.34  Aligned_cols=179  Identities=15%  Similarity=0.090  Sum_probs=114.2

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCce----------EEEcCC
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTF----------FNVLPS  123 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~----------~~v~~~  123 (343)
                      .|++|+|++.+++.+...+...           +-+..+||+||+|+||+++|.++|+.+-+.-          ...+.+
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP   70 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP   70 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence            5889999999999999988643           4467899999999999999999998863321          111112


Q ss_pred             ccc---------ccc--------cc--------chHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHH
Q psy7809         124 SLT---------SKH--------YG--------ESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVR  174 (343)
Q Consensus       124 ~l~---------~~~--------~~--------~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~  174 (343)
                      ++.         ++.        .+        -....++.+...+..    ....|++||++|.+         .....
T Consensus        71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m---------~~~aa  141 (314)
T PRK07399         71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM---------NEAAA  141 (314)
T ss_pred             CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc---------CHHHH
Confidence            211         000        00        011234555444432    23569999999988         34567


Q ss_pred             HHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCC-CCcccHHHHHHHccCCC
Q psy7809         175 CELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYS  249 (343)
Q Consensus       175 ~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s  249 (343)
                      +.|++.|+..     + +.++|.+|+.++.|-++++||+...-.    ..++...+-..... ..+.+...++..+.| +
T Consensus       142 NaLLK~LEEP-----p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~G-s  214 (314)
T PRK07399        142 NALLKTLEEP-----G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQG-S  214 (314)
T ss_pred             HHHHHHHhCC-----C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCC-C
Confidence            7899999864     3 346778888999999999997654433    33333333322111 112234788888877 5


Q ss_pred             HHHHHHHHHH
Q psy7809         250 GSDIRDLCQE  259 (343)
Q Consensus       250 ~~di~~l~~~  259 (343)
                      ++...++++.
T Consensus       215 ~~~al~~l~~  224 (314)
T PRK07399        215 PGAAIANIEQ  224 (314)
T ss_pred             HHHHHHHHHH
Confidence            6666555543

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.33  E-value=1.1e-11  Score=114.58  Aligned_cols=155  Identities=21%  Similarity=0.272  Sum_probs=93.2

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-------Cc--eEEEc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-------ST--FFNVL  121 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~--~~~v~  121 (343)
                      .+..|++|+|++++++.+.-.+..+            ...++||+|+||+|||++|++++..+.       .+  +..+.
T Consensus         3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~   70 (334)
T PRK13407          3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE   70 (334)
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence            4577999999999999888644321            235899999999999999999999882       21  11111


Q ss_pred             C-Ccc--------cc-------c--------cccch--HHHH-HH--HHHHH--HHcCCcEEEEcccccccCCCCchhhh
Q psy7809         122 P-SSL--------TS-------K--------HYGES--EKLV-RA--LFETA--RARAPAVIFIDEVDAFCSGSREHEAT  170 (343)
Q Consensus       122 ~-~~l--------~~-------~--------~~~~~--~~~i-~~--~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~  170 (343)
                      + .++        ..       .        ..|..  ...+ ..  .|..-  .....++|||||++.+         .
T Consensus        71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------~  141 (334)
T PRK13407         71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------E  141 (334)
T ss_pred             CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------C
Confidence            0 000        00       0        01110  0000 00  01100  0011259999999887         3


Q ss_pred             HHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHHHhhh
Q psy7809         171 RRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQIIGLC  226 (343)
Q Consensus       171 ~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~il~~~  226 (343)
                      ..++..|++.|+.-.        ....+.++++|+|+|..+ .++++++.||...+.         |.++++..
T Consensus       142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~  215 (334)
T PRK13407        142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR  215 (334)
T ss_pred             HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence            456666666664321        001144789999988754 589999999876665         56677664

>PRK09087 hypothetical protein; Validated

Probab=99.32  E-value=4.1e-11  Score=105.35  Aligned_cols=142  Identities=19%  Similarity=0.187  Sum_probs=84.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEA  169 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~  169 (343)
                      ..++|+||+|+|||||+++++...+..  +++..++...           ++....   ..+|+|||++.+..   ... 
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~---~~~-  104 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAA---EGPVLIEDIDAGGF---DET-  104 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhh---cCeEEEECCCCCCC---CHH-
Confidence            458999999999999999999876554  3333222111           111111   15899999997621   111 


Q ss_pred             hHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC---CCHHHhccccCcch----------HHHHHhhhhcCCCC-CCc
Q psy7809         170 TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD---LDEALKRRFEKRIS----------PIQIIGLCLGEIRK-DPN  235 (343)
Q Consensus       170 ~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~~~i~----------r~~il~~~~~~~~~-~~~  235 (343)
                            .|...++....   .++.+||+++..|..   ..+.+++||..-..          |..+++..+..... .++
T Consensus       105 ------~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~  175 (226)
T PRK09087        105 ------GLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP  175 (226)
T ss_pred             ------HHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence                  23333322222   124566666655543   25788998854433          88888888876533 345


Q ss_pred             ccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         236 VDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       236 ~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      ..++.|+++..| +.+.+..++.+..
T Consensus       176 ev~~~La~~~~r-~~~~l~~~l~~L~  200 (226)
T PRK09087        176 HVVYYLVSRMER-SLFAAQTIVDRLD  200 (226)
T ss_pred             HHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence            567889988875 4555555554433

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.32  E-value=4.1e-11  Score=110.84  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=98.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEEcCCccccccccchHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------FFNVLPSSLTSKHYGESEKLVRALFE  142 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~i~~~~~  142 (343)
                      +.+..+||+||+|+||+++|+++|+.+.+.                        ++.+.+.+- +.  .-....++.+..
T Consensus        20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~   96 (328)
T PRK05707         20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS   96 (328)
T ss_pred             CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence            556789999999999999999999988542                        222222110 00  012334555554


Q ss_pred             HHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809         143 TARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS  218 (343)
Q Consensus       143 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~  218 (343)
                      .+..    ....|++||++|.|         .....+.|++.++..     +.++++|.+|++++.|.+.++||+...-.
T Consensus        97 ~~~~~~~~~~~kv~iI~~a~~m---------~~~aaNaLLK~LEEP-----p~~~~fiL~t~~~~~ll~TI~SRc~~~~~  162 (328)
T PRK05707         97 FVVQTAQLGGRKVVLIEPAEAM---------NRNAANALLKSLEEP-----SGDTVLLLISHQPSRLLPTIKSRCQQQAC  162 (328)
T ss_pred             HHhhccccCCCeEEEECChhhC---------CHHHHHHHHHHHhCC-----CCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence            4432    33569999999988         446788999999864     44789999999999999999998766443


Q ss_pred             ----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHH
Q psy7809         219 ----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSD  252 (343)
Q Consensus       219 ----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~d  252 (343)
                          ..++...+........+.+...++..+.|- ++.
T Consensus       163 ~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la~Gs-p~~  199 (328)
T PRK05707        163 PLPSNEESLQWLQQALPESDERERIELLTLAGGS-PLR  199 (328)
T ss_pred             CCcCHHHHHHHHHHhcccCChHHHHHHHHHcCCC-HHH
Confidence                555555544332223344456677777773 443

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.32  E-value=7.7e-12  Score=101.63  Aligned_cols=113  Identities=28%  Similarity=0.346  Sum_probs=70.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc------cccc--hHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK------HYGE--SEKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~------~~~~--~~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                      +|+|+||||||||++|+.+|+.++.+++.+.+......      +.-.  ........+..+. ..+.+++|||++..  
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a--   77 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA--   77 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence            58999999999999999999999999988877553321      1100  0000000000000 14579999999866  


Q ss_pred             CCCchhhhHHHHHHHhhhcccCCCC--------CCCC------CEEEEEecCCCC----CCCHHHhccc
Q psy7809         163 GSREHEATRRVRCELLSHMDGVGTG--------SGDK------GVLVLAATNHPW----DLDEALKRRF  213 (343)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~------~v~vI~ttn~~~----~l~~~l~~rf  213 (343)
                             ...++..|+..++.-...        ....      ++.+|+|+|...    .+++++++||
T Consensus        78 -------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   78 -------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF  139 (139)
T ss_dssp             --------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred             -------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence                   345666666665531110        0011      389999999998    8999999997

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.31  E-value=5e-11  Score=110.39  Aligned_cols=154  Identities=17%  Similarity=0.278  Sum_probs=95.1

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcC
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLP  122 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~  122 (343)
                      .+...|.+|+|++++|..|...+..|            ...++||.|++|||||++||+++..+.       .+|. ..+
T Consensus        11 ~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p   77 (350)
T CHL00081         11 RPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP   77 (350)
T ss_pred             CCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence            34568999999999999999877654            335899999999999999999987663       1222 000


Q ss_pred             -------Cccccc-------------------cccchHHH------HHHHHHHHH---------HcCCcEEEEccccccc
Q psy7809         123 -------SSLTSK-------------------HYGESEKL------VRALFETAR---------ARAPAVIFIDEVDAFC  161 (343)
Q Consensus       123 -------~~l~~~-------------------~~~~~~~~------i~~~~~~a~---------~~~p~il~iDeid~l~  161 (343)
                             .++...                   ..+.+...      +...|....         ....++|||||++.+.
T Consensus        78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~  157 (350)
T CHL00081         78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD  157 (350)
T ss_pred             CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence                   000000                   00111111      111111111         1113699999998883


Q ss_pred             CCCCchhhhHHHHHHHhhhccc---------CCCCCCCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHH
Q psy7809         162 SGSREHEATRRVRCELLSHMDG---------VGTGSGDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQI  222 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~i  222 (343)
                               ...+..|+..|+.         .. ...+.++++|+|.|..+ .+.+.++.||.-.+.         +.+|
T Consensus       158 ---------~~~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~i  227 (350)
T CHL00081        158 ---------DHLVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKI  227 (350)
T ss_pred             ---------HHHHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHH
Confidence                     3455566666542         11 11244788888888655 589999999986554         6677


Q ss_pred             Hhhh
Q psy7809         223 IGLC  226 (343)
Q Consensus       223 l~~~  226 (343)
                      ++..
T Consensus       228 l~~~  231 (350)
T CHL00081        228 VEQR  231 (350)
T ss_pred             HHhh
Confidence            7664

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.28  E-value=4.2e-10  Score=101.64  Aligned_cols=137  Identities=22%  Similarity=0.157  Sum_probs=84.8

Q ss_pred             CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC------------CCCCCCHHHhccccCc
Q psy7809         149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN------------HPWDLDEALKRRFEKR  216 (343)
Q Consensus       149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn------------~~~~l~~~l~~rf~~~  216 (343)
                      |.||||||+|.|         .-..+..|.+.|+.-     -.++ +|.+||            .|+-++..+++|+--.
T Consensus       292 pGVLFIDEvHmL---------DIE~FsFlnrAlEse-----~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII  356 (450)
T COG1224         292 PGVLFIDEVHML---------DIECFSFLNRALESE-----LAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRLLII  356 (450)
T ss_pred             cceEEEechhhh---------hHHHHHHHHHHhhcc-----cCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhheeEE
Confidence            779999999877         223444444555422     1244 455555            4566888888865321


Q ss_pred             c----h---HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy7809         217 I----S---PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNI  288 (343)
Q Consensus       217 i----~---r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~  288 (343)
                      -    .   -.+|+++......+ .++..++.|+.....-|-+--.+|+.-|...|.++...                  
T Consensus       357 ~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~------------------  418 (450)
T COG1224         357 STRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK------------------  418 (450)
T ss_pred             ecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC------------------
Confidence            1    1   55667666655432 34555777887776666677777877777777776432                  


Q ss_pred             CCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy7809         289 GAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNEL  339 (343)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~  339 (343)
                                         .|..+|++.|.+-|-..  ..-++..++|...
T Consensus       419 -------------------~V~~~dVe~a~~lF~D~--krSv~~v~~~~~~  448 (450)
T COG1224         419 -------------------RVEVEDVERAKELFLDV--KRSVEYVEKYEGL  448 (450)
T ss_pred             -------------------eeehhHHHHHHHHHhhH--HHHHHHHHHHHhh
Confidence                               28889999999888533  1234555555544

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.27  E-value=4.3e-11  Score=120.31  Aligned_cols=142  Identities=20%  Similarity=0.266  Sum_probs=88.9

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-------------------
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-------------------  114 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-------------------  114 (343)
                      .|.+|+|++.++..+.-....+            ...+|||+|++|||||++|++++..+.                   
T Consensus         2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~   69 (633)
T TIGR02442         2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE   69 (633)
T ss_pred             CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence            4789999999999888666543            225799999999999999999998872                   


Q ss_pred             ----------------CceEEEcCCccccccccchHHHHHHHHHHH---------HHcCCcEEEEcccccccCCCCchhh
Q psy7809         115 ----------------STFFNVLPSSLTSKHYGESEKLVRALFETA---------RARAPAVIFIDEVDAFCSGSREHEA  169 (343)
Q Consensus       115 ----------------~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a---------~~~~p~il~iDeid~l~~~~~~~~~  169 (343)
                                      .+|+.+.+.......+|...  +...+...         .....++|||||++.+         
T Consensus        70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------  138 (633)
T TIGR02442        70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------  138 (633)
T ss_pred             cChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhC---------
Confidence                            34444433321111112110  11111000         0012259999999888         


Q ss_pred             hHHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCC-CCCCHHHhccccCcch
Q psy7809         170 TRRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHP-WDLDEALKRRFEKRIS  218 (343)
Q Consensus       170 ~~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~-~~l~~~l~~rf~~~i~  218 (343)
                      ...+++.|+..|+.-.        ....+.++.+|+|+|.. ..+.+.+++||...+.
T Consensus       139 ~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~  196 (633)
T TIGR02442       139 DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVD  196 (633)
T ss_pred             CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEE
Confidence            3456667777665210        00113468999998854 3588999999976554

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.26  E-value=2.7e-11  Score=112.48  Aligned_cols=135  Identities=25%  Similarity=0.328  Sum_probs=96.4

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC----------------------
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG----------------------  114 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~----------------------  114 (343)
                      +++|.+.+...+........          ..+..+||+||||+|||++|.++|+++.                      
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~   71 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG   71 (325)
T ss_pred             CcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence            56777777777776665321          2334699999999999999999999987                      


Q ss_pred             --CceEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC
Q psy7809         115 --STFFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS  188 (343)
Q Consensus       115 --~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~  188 (343)
                        ..++++++++.....  .....++.+-......    ...|++|||+|.|         .....+.++..++..    
T Consensus        72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m---------t~~A~nallk~lEep----  136 (325)
T COG0470          72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL---------TEDAANALLKTLEEP----  136 (325)
T ss_pred             CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH---------hHHHHHHHHHHhccC----
Confidence              457777776655432  1233344444433322    3469999999988         346788888888765    


Q ss_pred             CCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809         189 GDKGVLVLAATNHPWDLDEALKRRFEKRI  217 (343)
Q Consensus       189 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i  217 (343)
                       +.+..+|.+||.++.+-+.+++|+...-
T Consensus       137 -~~~~~~il~~n~~~~il~tI~SRc~~i~  164 (325)
T COG0470         137 -PKNTRFILITNDPSKILPTIRSRCQRIR  164 (325)
T ss_pred             -CCCeEEEEEcCChhhccchhhhcceeee
Confidence             4478999999999999999999654433

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.26  E-value=1.5e-10  Score=119.68  Aligned_cols=200  Identities=21%  Similarity=0.210  Sum_probs=121.4

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----  128 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----  128 (343)
                      +.|+||+..++.+...+......  + ....+|...+||+||+|+|||.+|+++|..+   ...++.++++++...    
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~g--l-~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~  642 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAG--L-EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS  642 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcC--C-CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence            46899999999998888643110  0 0001222358999999999999999999988   457888887765422    


Q ss_pred             --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEE
Q psy7809         129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVL  194 (343)
Q Consensus       129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~  194 (343)
                              |+|....  ..+....+.+.++||+|||||..         ...+.+.|++.++.-.-..      .-.+.+
T Consensus       643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka---------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i  711 (852)
T TIGR03345       643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA---------HPDVLELFYQVFDKGVMEDGEGREIDFKNTV  711 (852)
T ss_pred             cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc---------CHHHHHHHHHHhhcceeecCCCcEEeccccE
Confidence                    2222111  11233445567789999999876         3456677777776322100      124688


Q ss_pred             EEEecCCCC-----------------------------CCCHHHhccccCcch-------HHHHHhhhhcCC--------
Q psy7809         195 VLAATNHPW-----------------------------DLDEALKRRFEKRIS-------PIQIIGLCLGEI--------  230 (343)
Q Consensus       195 vI~ttn~~~-----------------------------~l~~~l~~rf~~~i~-------r~~il~~~~~~~--------  230 (343)
                      ||.|||...                             .+.|++++|++...+       ...|+...+...        
T Consensus       712 iI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~  791 (852)
T TIGR03345       712 ILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENH  791 (852)
T ss_pred             EEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999988421                             134566667752222       333443333221        


Q ss_pred             CC---CCcccHHHHHHHccC--CCHHHHHHHHHHHHHHHHHHHH
Q psy7809         231 RK---DPNVDVATLSKQLIG--YSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       231 ~~---~~~~~~~~la~~t~g--~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      ..   .++..++.|+....+  |-.+.|..+++.-+..++.+..
T Consensus       792 gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~  835 (852)
T TIGR03345       792 GAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI  835 (852)
T ss_pred             CceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            11   123335667777643  4578999999888877776654

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.26  E-value=2.4e-10  Score=103.01  Aligned_cols=118  Identities=22%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc------cccccccchHH-HHHH-------------------HH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS------LTSKHYGESEK-LVRA-------------------LF  141 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~------l~~~~~~~~~~-~i~~-------------------~~  141 (343)
                      ...+++|+||||||||++|+++|..++.+++.++|..      +.+.+.+.... .+..                   .+
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l   99 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL   99 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence            4468999999999999999999999999999997754      22222211111 1111                   11


Q ss_pred             HHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC----CCC-------CCCCEEEEEecCCCC-----CC
Q psy7809         142 ETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG----TGS-------GDKGVLVLAATNHPW-----DL  205 (343)
Q Consensus       142 ~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~----~~~-------~~~~v~vI~ttn~~~-----~l  205 (343)
                      ..|.. .+.+|+|||++.+         ...+.+.|+..|+.-.    ...       ...++.||+|+|...     .+
T Consensus       100 ~~A~~-~g~~lllDEi~r~---------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l  169 (262)
T TIGR02640       100 TLAVR-EGFTLVYDEFTRS---------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET  169 (262)
T ss_pred             HHHHH-cCCEEEEcchhhC---------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence            11222 2369999999876         2345555666554311    000       123677999999763     56


Q ss_pred             CHHHhccccC
Q psy7809         206 DEALKRRFEK  215 (343)
Q Consensus       206 ~~~l~~rf~~  215 (343)
                      ++++.+||..
T Consensus       170 ~~aL~~R~~~  179 (262)
T TIGR02640       170 QDALLDRLIT  179 (262)
T ss_pred             cHHHHhhcEE
Confidence            8889888743

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.26  E-value=6e-11  Score=112.23  Aligned_cols=139  Identities=22%  Similarity=0.269  Sum_probs=85.6

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEcC----C
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-------FFNVLP----S  123 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------~~~v~~----~  123 (343)
                      ++++.+.++..+.+...+.              ...+++|+||||||||++|+.+|..+...       ++.++.    .
T Consensus       174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe  239 (459)
T PRK11331        174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE  239 (459)
T ss_pred             hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence            4566666666666655553              34689999999999999999999987531       122221    1


Q ss_pred             cccccc----ccc--hHHHHHHHHHHHHHc--CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-----------
Q psy7809         124 SLTSKH----YGE--SEKLVRALFETARAR--APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV-----------  184 (343)
Q Consensus       124 ~l~~~~----~~~--~~~~i~~~~~~a~~~--~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-----------  184 (343)
                      +++..+    .+-  ....+..+...|...  .|.+|||||++.--        ..++...++..|+.-           
T Consensus       240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan--------i~kiFGel~~lLE~~~rg~~~~v~l~  311 (459)
T PRK11331        240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN--------LSKVFGEVMMLMEHDKRGENWSVPLT  311 (459)
T ss_pred             HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC--------HHHhhhhhhhhccccccccccceeee
Confidence            222111    110  011234445555543  57899999998652        223444444444311           


Q ss_pred             ------CCCCCCCCEEEEEecCCCC----CCCHHHhccccC
Q psy7809         185 ------GTGSGDKGVLVLAATNHPW----DLDEALKRRFEK  215 (343)
Q Consensus       185 ------~~~~~~~~v~vI~ttn~~~----~l~~~l~~rf~~  215 (343)
                            ....-+.++.||||+|..+    .+|.+++|||..
T Consensus       312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f  352 (459)
T PRK11331        312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF  352 (459)
T ss_pred             ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe
Confidence                  0112256899999999887    689999999855

>PHA02244 ATPase-like protein

Probab=99.26  E-value=2e-10  Score=106.01  Aligned_cols=118  Identities=22%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC----ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS----SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~----~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                      ....++||+||||||||++|+++|..++.+++.++..    .+.+ +..........-|-.+.. ..++|+|||++.+.+
T Consensus       117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p  194 (383)
T PHA02244        117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP  194 (383)
T ss_pred             hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCCH
Confidence            4456899999999999999999999999999988742    1111 011110111112222222 347999999987732


Q ss_pred             CCCchhhhHHHHHHHhhhccc-----CCCC-CCCCCEEEEEecCCC-----------CCCCHHHhccccC
Q psy7809         163 GSREHEATRRVRCELLSHMDG-----VGTG-SGDKGVLVLAATNHP-----------WDLDEALKRRFEK  215 (343)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~l~~-----~~~~-~~~~~v~vI~ttn~~-----------~~l~~~l~~rf~~  215 (343)
                               .++..|...++.     .... ....++.+|+|+|.+           ..|++++++||..
T Consensus       195 ---------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~  255 (383)
T PHA02244        195 ---------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP  255 (383)
T ss_pred             ---------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEE
Confidence                     233333333321     1110 012478999999974           4578999999864

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.25  E-value=1.5e-10  Score=107.66  Aligned_cols=134  Identities=19%  Similarity=0.230  Sum_probs=94.0

Q ss_pred             CCCcccc-cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------------
Q psy7809          54 GWDDIAG-LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST----------------  116 (343)
Q Consensus        54 ~~~~l~G-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----------------  116 (343)
                      .|+.|+| ++.+++.|...+...           ..++.+||+||+|+||+++|+.+|+.+.+.                
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~   71 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR   71 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence            4788888 888999998887532           456678999999999999999999887432                


Q ss_pred             --------eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         117 --------FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       117 --------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                              +..+...   +.  ......++.+...+.    .....|++|||+|.+         .....+.|++.++..
T Consensus        72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~---------~~~a~NaLLK~LEEP  137 (329)
T PRK08058         72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM---------TASAANSLLKFLEEP  137 (329)
T ss_pred             HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh---------CHHHHHHHHHHhcCC
Confidence                    2222111   00  011233444444332    123469999999888         345678999999864


Q ss_pred             CCCCCCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809         185 GTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI  217 (343)
Q Consensus       185 ~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i  217 (343)
                           +..+++|.+|+.+..+.++++||+...-
T Consensus       138 -----p~~~~~Il~t~~~~~ll~TIrSRc~~i~  165 (329)
T PRK08058        138 -----SGGTTAILLTENKHQILPTILSRCQVVE  165 (329)
T ss_pred             -----CCCceEEEEeCChHhCcHHHHhhceeee
Confidence                 4477888899899999999999765443

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.25  E-value=5.4e-11  Score=99.24  Aligned_cols=128  Identities=23%  Similarity=0.349  Sum_probs=87.6

Q ss_pred             ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----------------------
Q psy7809          60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----------------------  116 (343)
Q Consensus        60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----------------------  116 (343)
                      |++++.+.|...+...           .-+..+||+||+|+||+++|+++|+.+-..                       
T Consensus         1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d   69 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD   69 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred             CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence            7888899998887643           456779999999999999999999877331                       


Q ss_pred             eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         117 FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      ++.+.......   .-....++.+...+..    ....|++|||+|.|         .....+.|++.|+..     +.+
T Consensus        70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l---------~~~a~NaLLK~LEep-----p~~  132 (162)
T PF13177_consen   70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL---------TEEAQNALLKTLEEP-----PEN  132 (162)
T ss_dssp             EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS----------HHHHHHHHHHHHST-----TTT
T ss_pred             eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh---------hHHHHHHHHHHhcCC-----CCC
Confidence            23332221100   1122344554444322    23569999999988         557889999999865     458


Q ss_pred             EEEEEecCCCCCCCHHHhccccC
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEK  215 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~  215 (343)
                      +++|.+|++++.+.+.++||+..
T Consensus       133 ~~fiL~t~~~~~il~TI~SRc~~  155 (162)
T PF13177_consen  133 TYFILITNNPSKILPTIRSRCQV  155 (162)
T ss_dssp             EEEEEEES-GGGS-HHHHTTSEE
T ss_pred             EEEEEEECChHHChHHHHhhceE
Confidence            89999999999999999997643

...

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.24  E-value=2.2e-10  Score=106.08  Aligned_cols=149  Identities=20%  Similarity=0.271  Sum_probs=90.3

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-------CCceE--------
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-------GSTFF--------  118 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~--------  118 (343)
                      .|..|+|++++|..|.-.+..|            ...+++|.|++|+|||+++++++..+       ++++-        
T Consensus         2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (337)
T TIGR02030         2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM   69 (337)
T ss_pred             CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence            4788999999999987666543            24579999999999999999999776       22221        


Q ss_pred             -EEcCC-------------------cccc-----ccccchHHHHHHHH-------HH--HHHcCCcEEEEcccccccCCC
Q psy7809         119 -NVLPS-------------------SLTS-----KHYGESEKLVRALF-------ET--ARARAPAVIFIDEVDAFCSGS  164 (343)
Q Consensus       119 -~v~~~-------------------~l~~-----~~~~~~~~~i~~~~-------~~--a~~~~p~il~iDeid~l~~~~  164 (343)
                       ..+|.                   ++-.     ...|..  .+...+       ..  .......+|||||++.+    
T Consensus        70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L----  143 (337)
T TIGR02030        70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL----  143 (337)
T ss_pred             cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC----
Confidence             00111                   0000     111111  011110       00  00112369999999987    


Q ss_pred             CchhhhHHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHHHhh
Q psy7809         165 REHEATRRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQIIGL  225 (343)
Q Consensus       165 ~~~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~il~~  225 (343)
                           ....+..|+..|+.-.        ....+.++++|+|.|..+ .+++.++.||...+.         |.+|++.
T Consensus       144 -----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~  217 (337)
T TIGR02030       144 -----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVER  217 (337)
T ss_pred             -----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence                 3345556666654210        001134788889988655 689999999876654         5666665

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.24  E-value=3.7e-11  Score=100.92  Aligned_cols=114  Identities=25%  Similarity=0.329  Sum_probs=74.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC----ceEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS----TFFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDA  159 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~----~~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~  159 (343)
                      |-.++||.||+|||||.+|+++|..+..    +++.+++.++....  .....+..++..+    ......||+|||||+
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK   79 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK   79 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence            3457999999999999999999999996    99999999887610  0011111111111    111124999999999


Q ss_pred             ccCC--CCchhhhHHHHHHHhhhcccCCC--C----CCCCCEEEEEecCCCC
Q psy7809         160 FCSG--SREHEATRRVRCELLSHMDGVGT--G----SGDKGVLVLAATNHPW  203 (343)
Q Consensus       160 l~~~--~~~~~~~~~~~~~ll~~l~~~~~--~----~~~~~v~vI~ttn~~~  203 (343)
                      ..+.  .........+++.|++.+++-.-  .    -.-+++++|+|+|--.
T Consensus        80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~  131 (171)
T PF07724_consen   80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA  131 (171)
T ss_dssp             CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred             ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence            9762  33334445788888888863111  0    1134789999999654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.24  E-value=1.6e-10  Score=98.86  Aligned_cols=140  Identities=20%  Similarity=0.221  Sum_probs=85.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEEcCCccccccccchHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------FFNVLPSSLTSKHYGESEKLVRALFE  142 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~i~~~~~  142 (343)
                      ..+..+||+||+|+|||++|+.+++.+...                        +..+....   .  ......++.+.+
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~   86 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE   86 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence            345679999999999999999999987542                        22221111   0  011234555555


Q ss_pred             HHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809         143 TARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS  218 (343)
Q Consensus       143 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~  218 (343)
                      .+..    ....|++|||+|.+.         ....+.|+..++..     +...++|.+++.+..+.+++++|+...-.
T Consensus        87 ~~~~~~~~~~~kviiide~~~l~---------~~~~~~Ll~~le~~-----~~~~~~il~~~~~~~l~~~i~sr~~~~~~  152 (188)
T TIGR00678        87 FLSRTPQESGRRVVIIEDAERMN---------EAAANALLKTLEEP-----PPNTLFILITPSPEKLLPTIRSRCQVLPF  152 (188)
T ss_pred             HHccCcccCCeEEEEEechhhhC---------HHHHHHHHHHhcCC-----CCCeEEEEEECChHhChHHHHhhcEEeeC
Confidence            5433    235699999999883         23466788888754     23566777777888999999997642221


Q ss_pred             ----HHHHHhhhhcCCCCCCcccHHHHHHHccC
Q psy7809         219 ----PIQIIGLCLGEIRKDPNVDVATLSKQLIG  247 (343)
Q Consensus       219 ----r~~il~~~~~~~~~~~~~~~~~la~~t~g  247 (343)
                          ..++..++... . .++..+..++..+.|
T Consensus       153 ~~~~~~~~~~~l~~~-g-i~~~~~~~i~~~~~g  183 (188)
T TIGR00678       153 PPLSEEALLQWLIRQ-G-ISEEAAELLLALAGG  183 (188)
T ss_pred             CCCCHHHHHHHHHHc-C-CCHHHHHHHHHHcCC
Confidence                33333222222 2 223445666666655

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.22  E-value=2.8e-10  Score=118.21  Aligned_cols=201  Identities=22%  Similarity=0.279  Sum_probs=124.4

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc---
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH---  129 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~---  129 (343)
                      +.|+|++.+++.+...+......  + .....|...+||+||+|||||++|+++|..+   +.+++.++++++....   
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~g--l-~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~  641 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAG--L-SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA  641 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhcc--C-CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence            46899999999999888642100  0 0001344579999999999999999999987   4678888887764321   


Q ss_pred             ---------ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC--CC----CCCCCEE
Q psy7809         130 ---------YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG--TG----SGDKGVL  194 (343)
Q Consensus       130 ---------~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~--~~----~~~~~v~  194 (343)
                               +|...  -..+.........+||+||||+.+         +..+.+.|++.++.-.  ..    -.-++.+
T Consensus       642 ~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka---------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i  710 (852)
T TIGR03346       642 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA---------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV  710 (852)
T ss_pred             HhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC---------CHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence                     11111  112233334445579999999877         4467777888775321  10    0123678


Q ss_pred             EEEecCCCCC-------------------------CCHHHhccccCcch--------HHHHHhhhhcC-------CC---
Q psy7809         195 VLAATNHPWD-------------------------LDEALKRRFEKRIS--------PIQIIGLCLGE-------IR---  231 (343)
Q Consensus       195 vI~ttn~~~~-------------------------l~~~l~~rf~~~i~--------r~~il~~~~~~-------~~---  231 (343)
                      ||+|||....                         ..|.++.|++..+.        ..+|+...+..       ..   
T Consensus       711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l  790 (852)
T TIGR03346       711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITL  790 (852)
T ss_pred             EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence            9999997321                         22445556665443        33444433332       11   


Q ss_pred             CCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         232 KDPNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       232 ~~~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      ..++..++.|++..  ..+..+.|+.++++.+...+.+..-
T Consensus       791 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l  831 (852)
T TIGR03346       791 ELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL  831 (852)
T ss_pred             cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            11333455677653  2456899999999999888876653

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.21  E-value=3.6e-10  Score=117.12  Aligned_cols=198  Identities=23%  Similarity=0.300  Sum_probs=117.1

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc--
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH--  129 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~--  129 (343)
                      .+.|+|++.+++.+...+......  + .....|...+||+||+|||||++|++++..+   +.+++.++++++....  
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~~g--l-~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~  643 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSRAG--L-SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV  643 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHHhc--c-cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence            346899999999998887542100  0 0000223468999999999999999999887   4568888887764321  


Q ss_pred             ----------ccchHHHHHHHHHHH-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC--CCC----CCCCC
Q psy7809         130 ----------YGESEKLVRALFETA-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV--GTG----SGDKG  192 (343)
Q Consensus       130 ----------~~~~~~~i~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~--~~~----~~~~~  192 (343)
                                +|...   ...+..+ .....+||+|||++.+         ...+.+.|++.++.-  ...    -.-.+
T Consensus       644 ~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka---------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn  711 (857)
T PRK10865        644 SRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKA---------HPDVFNILLQVLDDGRLTDGQGRTVDFRN  711 (857)
T ss_pred             HHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhC---------CHHHHHHHHHHHhhCceecCCceEEeecc
Confidence                      11110   1122222 3333489999999877         345677777777531  110    01235


Q ss_pred             EEEEEecCCCC-------------------------CCCHHHhccccCcch--------HHHHHhhhhcCC-------CC
Q psy7809         193 VLVLAATNHPW-------------------------DLDEALKRRFEKRIS--------PIQIIGLCLGEI-------RK  232 (343)
Q Consensus       193 v~vI~ttn~~~-------------------------~l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~~  232 (343)
                      .+||+|||...                         .+.|+++.|++..+.        ...|++.++...       ..
T Consensus       712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi  791 (857)
T PRK10865        712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGY  791 (857)
T ss_pred             cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            67899998631                         134567777755443        333333333221       11


Q ss_pred             ---CCcccHHHHHHHccCCC----HHHHHHHHHHHHHHHHHHHH
Q psy7809         233 ---DPNVDVATLSKQLIGYS----GSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       233 ---~~~~~~~~la~~t~g~s----~~di~~l~~~A~~~a~~r~~  269 (343)
                         .++.-++.|+..  ||+    .+.|+.++++-+...+.+..
T Consensus       792 ~l~is~~al~~L~~~--gy~~~~GARpL~r~I~~~i~~~la~~i  833 (857)
T PRK10865        792 EIHISDEALKLLSEN--GYDPVYGARPLKRAIQQQIENPLAQQI  833 (857)
T ss_pred             cCcCCHHHHHHHHHc--CCCccCChHHHHHHHHHHHHHHHHHHH
Confidence               122234445543  443    67899999888887776654

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.21  E-value=2.7e-10  Score=117.94  Aligned_cols=201  Identities=22%  Similarity=0.234  Sum_probs=123.2

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----  128 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----  128 (343)
                      +.|+||+++++.+...+......  + ....+|..++||+||+|+|||++|+++|+.+   +.+++.++++++...    
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~g--l-~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~  585 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVG--L-KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS  585 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhc--c-cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence            46899999999998887532110  0 0011333568999999999999999999987   357888887766432    


Q ss_pred             --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-CC-----CCCCCEE
Q psy7809         129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-TG-----SGDKGVL  194 (343)
Q Consensus       129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~-----~~~~~v~  194 (343)
                              |+|..+  ...+.........+||+|||+|.+         ...+.+.|++.++.-. ..     -.-++.+
T Consensus       586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka---------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i  654 (821)
T CHL00095        586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA---------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTL  654 (821)
T ss_pred             HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC---------CHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence                    111111  122344444455589999999987         4467788888887421 00     0124788


Q ss_pred             EEEecCCCCC-------------------------------------CCHHHhccccCcch--------HHHHHhhhhcC
Q psy7809         195 VLAATNHPWD-------------------------------------LDEALKRRFEKRIS--------PIQIIGLCLGE  229 (343)
Q Consensus       195 vI~ttn~~~~-------------------------------------l~~~l~~rf~~~i~--------r~~il~~~~~~  229 (343)
                      ||+|||....                                     ..|.+++|++..+.        ...|++..+..
T Consensus       655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~  734 (821)
T CHL00095        655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN  734 (821)
T ss_pred             EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            9999885321                                     12455667765554        33444433332


Q ss_pred             C-------CCC---CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         230 I-------RKD---PNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       230 ~-------~~~---~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .       ...   ++...+.|+...  ..|-.+.|+.++++-+..++.+..-
T Consensus       735 l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l  787 (821)
T CHL00095        735 LFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL  787 (821)
T ss_pred             HHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence            1       111   222355677652  2445788999998888877776553

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.5e-10  Score=115.69  Aligned_cols=163  Identities=21%  Similarity=0.288  Sum_probs=122.5

Q ss_pred             hHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---
Q psy7809          37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---  113 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---  113 (343)
                      ...+.....+......-.++-++|.++-++++.+.+...            ..++-+|.|+||+|||.++..+|.+.   
T Consensus       151 ~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g  218 (786)
T COG0542         151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNG  218 (786)
T ss_pred             hhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcC
Confidence            455666666666667778999999999999988888753            33466889999999999999999875   


Q ss_pred             -------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         114 -------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       114 -------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                             +..++.++...+.  .+|-|+.+..++.+.+......+.||||||+|.+.+.+...+..-...+-|.-.+.  
T Consensus       219 ~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--  296 (786)
T COG0542         219 DVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--  296 (786)
T ss_pred             CCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--
Confidence                   4567888887776  46889999999999999998888999999999999854432212223333333332  


Q ss_pred             CCCCCCCCEEEEEecCCCC-----CCCHHHhccccCcch
Q psy7809         185 GTGSGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS  218 (343)
Q Consensus       185 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~  218 (343)
                           ...+-+||+|+..+     .-|++|-|||+....
T Consensus       297 -----RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V  330 (786)
T COG0542         297 -----RGELRCIGATTLDEYRKYIEKDAALERRFQKVLV  330 (786)
T ss_pred             -----cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeC
Confidence                 23567888887543     358999999988775

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.6e-10  Score=101.40  Aligned_cols=65  Identities=31%  Similarity=0.354  Sum_probs=50.9

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      -|+||++.|+.+.-.+.....+.++-..+  --.|.++|..||+|+|||-+||.+|+..+.||+.+.
T Consensus        16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE   82 (444)
T COG1220          16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE   82 (444)
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            37999999999887776544433332222  245789999999999999999999999999998763

>KOG1969|consensus

Probab=99.20  E-value=3.8e-10  Score=110.16  Aligned_cols=206  Identities=19%  Similarity=0.213  Sum_probs=120.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccc----c-------------ChHHHhcc-----CCCCceEEEEcCCCchH
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPK----L-------------MPQLFKGI-----LRPWRGILLFGPPGTGK  102 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~----~-------------~~~~~~~~-----~~~~~~vll~Gp~GtGK  102 (343)
                      -++.++.+..|.||.|-+.+-+.+..++...-    .             ..+.+...     -++.+-+||+||||.||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            46888999999999998888887777664210    0             00111111     12224588999999999


Q ss_pred             HHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHh
Q psy7809         103 TLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELL  178 (343)
Q Consensus       103 T~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll  178 (343)
                      ||||+.+|+..|+.+++++.++-.+.  ......+..+...-.    ...|..|+|||||--         .......++
T Consensus       340 TTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------~~~~Vdvil  408 (877)
T KOG1969|consen  340 TTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------PRAAVDVIL  408 (877)
T ss_pred             hHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC---------cHHHHHHHH
Confidence            99999999999999999999875432  112223333332221    145889999999843         233344444


Q ss_pred             hhccc-----CCCCC-----------CCCCEEEEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCC
Q psy7809         179 SHMDG-----VGTGS-----------GDKGVLVLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRK  232 (343)
Q Consensus       179 ~~l~~-----~~~~~-----------~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~  232 (343)
                      ..+..     .+...           +.=...|||.||+...  |+|+.  -|...+.        ..+-|+..+.+...
T Consensus       409 slv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m  486 (877)
T KOG1969|consen  409 SLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM  486 (877)
T ss_pred             HHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence            44431     11000           0013568999998664  56654  3444443        11222222222211


Q ss_pred             CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809         233 DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       233 ~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~  266 (343)
                        ..|...|+..++ ++..||+..++.....+..
T Consensus       487 --r~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~  517 (877)
T KOG1969|consen  487 --RADSKALNALCE-LTQNDIRSCINTLQFLASN  517 (877)
T ss_pred             --CCCHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence              244455555553 3467888877776666653

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.19  E-value=2.2e-10  Score=114.27  Aligned_cols=53  Identities=32%  Similarity=0.438  Sum_probs=44.8

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .|..-+++++|++++++.+...+..              ..+++|+||||||||++++++++.++..
T Consensus        12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~   64 (608)
T TIGR00764        12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE   64 (608)
T ss_pred             cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence            4556788999999999998877752              2489999999999999999999988654

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.19  E-value=7.2e-10  Score=102.01  Aligned_cols=157  Identities=16%  Similarity=0.163  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------  116 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------  116 (343)
                      +....+.|...+...           +.+..+||+||+|+||+++|+++|+.+-+.                        
T Consensus         7 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD   75 (325)
T PRK06871          7 LQPTYQQITQAFQQG-----------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD   75 (325)
T ss_pred             hHHHHHHHHHHHHcC-----------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            344555555555432           456789999999999999999999887431                        


Q ss_pred             eEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         117 FFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      ++.+.+.+  ++  .-....++.+...+.    .....|++||++|.|         .....+.|++.++.-     +.+
T Consensus        76 ~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m---------~~~AaNaLLKtLEEP-----p~~  137 (325)
T PRK06871         76 FHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL---------TEAAANALLKTLEEP-----RPN  137 (325)
T ss_pred             EEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhh---------CHHHHHHHHHHhcCC-----CCC
Confidence            22222110  00  112334555444433    233469999999988         446788999999854     558


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccC
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIG  247 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g  247 (343)
                      +++|.+|+.++.|.+.++||+...-.    ..++...+..... ........++..+.|
T Consensus       138 ~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~~~~~l~~g  195 (325)
T PRK06871        138 TYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-AEISEILTALRINYG  195 (325)
T ss_pred             eEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-cChHHHHHHHHHcCC
Confidence            89999999999999999997655443    4444433332211 222234455566666

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.18  E-value=1.3e-10  Score=93.39  Aligned_cols=74  Identities=31%  Similarity=0.504  Sum_probs=57.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCc---eEEEcCCccccc--------------cccchHHHHHHHHHHHHHcCCcE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGST---FFNVLPSSLTSK--------------HYGESEKLVRALFETARARAPAV  151 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~~~~l~~~--------------~~~~~~~~i~~~~~~a~~~~p~i  151 (343)
                      +..++|+||||||||++++.+|..+...   ++.+++......              ...........++..+....+.+
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV   81 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            3579999999999999999999999775   888877654332              11233455677888888877899


Q ss_pred             EEEcccccccC
Q psy7809         152 IFIDEVDAFCS  162 (343)
Q Consensus       152 l~iDeid~l~~  162 (343)
                      |+|||++.+..
T Consensus        82 iiiDei~~~~~   92 (148)
T smart00382       82 LILDEITSLLD   92 (148)
T ss_pred             EEEECCcccCC
Confidence            99999998864

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.18  E-value=4.6e-10  Score=102.49  Aligned_cols=120  Identities=18%  Similarity=0.154  Sum_probs=77.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc--cccchH----------HHHHHHHHHHHHcCCcEEEEc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK--HYGESE----------KLVRALFETARARAPAVIFID  155 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~--~~~~~~----------~~i~~~~~~a~~~~p~il~iD  155 (343)
                      ..++++|.||||||||++++.+|..++.+++.+++......  ..|...          ......+..|.. .+.+|++|
T Consensus        63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD  141 (327)
T TIGR01650        63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD  141 (327)
T ss_pred             cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence            34689999999999999999999999999999987655433  222210          001122333332 45789999


Q ss_pred             ccccccCCCCchhhhHHHHHHHhhhccc--------CC-CCCCCCCEEEEEecCCCC------------CCCHHHhcccc
Q psy7809         156 EVDAFCSGSREHEATRRVRCELLSHMDG--------VG-TGSGDKGVLVLAATNHPW------------DLDEALKRRFE  214 (343)
Q Consensus       156 eid~l~~~~~~~~~~~~~~~~ll~~l~~--------~~-~~~~~~~v~vI~ttn~~~------------~l~~~l~~rf~  214 (343)
                      |+|..-+         .+++.|...++.        .. .......+.||+|.|..+            .+++++++||.
T Consensus       142 Ein~a~p---------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~  212 (327)
T TIGR01650       142 EYDAGRP---------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS  212 (327)
T ss_pred             hhhccCH---------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence            9997722         333343333331        11 111233688999999854            36899999997


Q ss_pred             Ccc
Q psy7809         215 KRI  217 (343)
Q Consensus       215 ~~i  217 (343)
                      ..+
T Consensus       213 i~~  215 (327)
T TIGR01650       213 IVT  215 (327)
T ss_pred             eEe
Confidence            654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.17  E-value=1.2e-09  Score=101.34  Aligned_cols=144  Identities=16%  Similarity=0.193  Sum_probs=94.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc------------------------eEEEcCCccccccccchHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST------------------------FFNVLPSSLTSKHYGESEKLVRALFE  142 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~i~~~~~  142 (343)
                      +.+..+||+||+|+||+++|.++|..+-+.                        ++.+.+..- .  ..-..+.++.+..
T Consensus        22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~~   98 (334)
T PRK07993         22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVTE   98 (334)
T ss_pred             CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHHH
Confidence            556789999999999999999999887431                        222222100 0  0011233444444


Q ss_pred             HH----HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809         143 TA----RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS  218 (343)
Q Consensus       143 ~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~  218 (343)
                      .+    ......|++||++|.|         .....|.|++.|++-     +.++++|.+|+.++.|.+.++||+.....
T Consensus        99 ~~~~~~~~g~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~t~fiL~t~~~~~lLpTIrSRCq~~~~  164 (334)
T PRK07993         99 KLYEHARLGGAKVVWLPDAALL---------TDAAANALLKTLEEP-----PENTWFFLACREPARLLATLRSRCRLHYL  164 (334)
T ss_pred             HHhhccccCCceEEEEcchHhh---------CHHHHHHHHHHhcCC-----CCCeEEEEEECChhhChHHHHhccccccC
Confidence            33    3334569999999988         446788999999854     55889999999999999999998775443


Q ss_pred             ----HHHHHhhhhcCCCCCCcccHHHHHHHccCC
Q psy7809         219 ----PIQIIGLCLGEIRKDPNVDVATLSKQLIGY  248 (343)
Q Consensus       219 ----r~~il~~~~~~~~~~~~~~~~~la~~t~g~  248 (343)
                          ..++.......... +......++..+.|-
T Consensus       165 ~~~~~~~~~~~L~~~~~~-~~~~a~~~~~la~G~  197 (334)
T PRK07993        165 APPPEQYALTWLSREVTM-SQDALLAALRLSAGA  197 (334)
T ss_pred             CCCCHHHHHHHHHHccCC-CHHHHHHHHHHcCCC
Confidence                44444333333222 233355667777774

>KOG0990|consensus

Probab=99.15  E-value=1.4e-10  Score=103.41  Aligned_cols=142  Identities=20%  Similarity=0.227  Sum_probs=100.7

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc------e
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST------F  117 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~------~  117 (343)
                      -++.+++++..+.++++++++...+.++...+            ...+.|+|||||+|||+...+.|..+..+      +
T Consensus        29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~   96 (360)
T KOG0990|consen   29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML   96 (360)
T ss_pred             CCCccCCCCchhhhHhcCCchhhHHHHhccCC------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence            46789999999999999999999999885433            22389999999999999999999998764      1


Q ss_pred             EEEcCCccccccccchHHHHHHHHHHHHH-------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCC
Q psy7809         118 FNVLPSSLTSKHYGESEKLVRALFETARA-------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGD  190 (343)
Q Consensus       118 ~~v~~~~l~~~~~~~~~~~i~~~~~~a~~-------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~  190 (343)
                      ..++.++-.+-   .....-...|..++.       ..+.++++||+|.+         ....+++|.+.++.+..    
T Consensus        97 lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM---------T~~AQnALRRviek~t~----  160 (360)
T KOG0990|consen   97 LELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM---------TRDAQNALRRVIEKYTA----  160 (360)
T ss_pred             HHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh---------hHHHHHHHHHHHHHhcc----
Confidence            12222221111   111222233444432       25679999999988         44667777777766633    


Q ss_pred             CCEEEEEecCCCCCCCHHHhcccc
Q psy7809         191 KGVLVLAATNHPWDLDEALKRRFE  214 (343)
Q Consensus       191 ~~v~vI~ttn~~~~l~~~l~~rf~  214 (343)
                       ++.++..+|.+..+.+++++||.
T Consensus       161 -n~rF~ii~n~~~ki~pa~qsRct  183 (360)
T KOG0990|consen  161 -NTRFATISNPPQKIHPAQQSRCT  183 (360)
T ss_pred             -ceEEEEeccChhhcCchhhcccc
Confidence             56777889999999999998654

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.15  E-value=1.5e-10  Score=107.83  Aligned_cols=138  Identities=29%  Similarity=0.358  Sum_probs=89.5

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc--ccchH
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH--YGESE  134 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~--~~~~~  134 (343)
                      .++|.++++..+...+.              ...++||.||||||||++|+++|..++.+|+.+.|.......  .|...
T Consensus        25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~   90 (329)
T COG0714          25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA   90 (329)
T ss_pred             eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence            36777777777665553              346899999999999999999999999999999886543221  11110


Q ss_pred             HHH----HHHHHHHHH--cCC--cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC------C-CCCCCCEEEEEec
Q psy7809         135 KLV----RALFETARA--RAP--AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG------T-GSGDKGVLVLAAT  199 (343)
Q Consensus       135 ~~i----~~~~~~a~~--~~p--~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~------~-~~~~~~v~vI~tt  199 (343)
                      -..    ...|.....  ...  +|+++|||+..         ...+.+.|+..|+...      . ..-+..++||+|.
T Consensus        91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra---------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~  161 (329)
T COG0714          91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA---------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ  161 (329)
T ss_pred             HhhhhccCCeEEEecCCcccccceEEEEeccccC---------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence            000    000000000  001  39999999765         4466777777776411      1 1124578899999


Q ss_pred             C-----CCCCCCHHHhccccCcc
Q psy7809         200 N-----HPWDLDEALKRRFEKRI  217 (343)
Q Consensus       200 n-----~~~~l~~~l~~rf~~~i  217 (343)
                      |     ....+++++++||...+
T Consensus       162 Np~e~~g~~~l~eA~ldRf~~~~  184 (329)
T COG0714         162 NPGEYEGTYPLPEALLDRFLLRI  184 (329)
T ss_pred             CccccCCCcCCCHHHHhhEEEEE
Confidence            9     55678999999985443

>TIGR00368 Mg chelatase-related protein

Probab=99.15  E-value=2.5e-10  Score=111.02  Aligned_cols=176  Identities=22%  Similarity=0.241  Sum_probs=102.9

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----------------
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----------------  115 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----------------  115 (343)
                      ..|+++.|+..+++.+.-.+              ....+++|.||||||||++++.++..+..                 
T Consensus       189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g  254 (499)
T TIGR00368       189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG  254 (499)
T ss_pred             CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence            37899999999988777544              34468999999999999999999875421                 


Q ss_pred             -----------ceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         116 -----------TFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       116 -----------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                                 +|...++.......+|+....-...+..|   ..++|||||++.+         ...++..|+..|+.-
T Consensus       255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~---------~~~~~~~L~~~LE~~  322 (499)
T TIGR00368       255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF---------KRSVLDALREPIEDG  322 (499)
T ss_pred             hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC---------CHHHHHHHHHHHHcC
Confidence                       11111111000000111000001122222   2379999999877         345666666666432


Q ss_pred             C--------CCCCCCCEEEEEecCCC-----C------------------CCCHHHhccccCcchHHHHHhhhhcCCCCC
Q psy7809         185 G--------TGSGDKGVLVLAATNHP-----W------------------DLDEALKRRFEKRISPIQIIGLCLGEIRKD  233 (343)
Q Consensus       185 ~--------~~~~~~~v~vI~ttn~~-----~------------------~l~~~l~~rf~~~i~r~~il~~~~~~~~~~  233 (343)
                      .        ....+.++.+|+++|..     .                  .+...+++||+..+.              .
T Consensus       323 ~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~--------------~  388 (499)
T TIGR00368       323 SISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVE--------------V  388 (499)
T ss_pred             cEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEE--------------E
Confidence            1        01113478899999863     1                  244445555554442              1


Q ss_pred             CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         234 PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       234 ~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      ..++...+.....+-+..++++-+..|......|.
T Consensus       389 ~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~  423 (499)
T TIGR00368       389 PLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRY  423 (499)
T ss_pred             cCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            22334455555567788889888888877766664

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.6e-11  Score=105.72  Aligned_cols=95  Identities=33%  Similarity=0.499  Sum_probs=72.0

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccch-HHHHHHHHHHHHH----cCCcEEEEcccccccCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGES-EKLVRALFETARA----RAPAVIFIDEVDAFCSG  163 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~~-~~~i~~~~~~a~~----~~p~il~iDeid~l~~~  163 (343)
                      .++||.||+|||||.||+.+|+.++.||...++..+.. .|+|+- +..+..++..|..    ...+|++|||||++...
T Consensus        98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark  177 (408)
T COG1219          98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK  177 (408)
T ss_pred             ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence            57999999999999999999999999999999988874 567764 4445566555522    23479999999999874


Q ss_pred             CCc-----hhhhHHHHHHHhhhcccC
Q psy7809         164 SRE-----HEATRRVRCELLSHMDGV  184 (343)
Q Consensus       164 ~~~-----~~~~~~~~~~ll~~l~~~  184 (343)
                      ...     .....-++.+|++.+++-
T Consensus       178 SeN~SITRDVSGEGVQQALLKiiEGT  203 (408)
T COG1219         178 SENPSITRDVSGEGVQQALLKIIEGT  203 (408)
T ss_pred             CCCCCcccccCchHHHHHHHHHHcCc
Confidence            221     123345778899988863

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.15  E-value=1.7e-11  Score=96.11  Aligned_cols=108  Identities=29%  Similarity=0.346  Sum_probs=60.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC-ccc-----cccccchHH-H----HHHHHHHHHHcCCcEEEEccccc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS-SLT-----SKHYGESEK-L----VRALFETARARAPAVIFIDEVDA  159 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~-~l~-----~~~~~~~~~-~----i~~~~~~a~~~~p~il~iDeid~  159 (343)
                      ++||+|+||+|||++|+++|+.++..|..|.+. ++.     +..+-.... .    -.-+|       ..|+++|||..
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr   73 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR   73 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence            589999999999999999999999999888663 222     111110000 0    00011       14999999965


Q ss_pred             ccCCCCchhhhHHHHHHHhhhcccCCCC------CCCCCEEEEEecCCCC-----CCCHHHhcccc
Q psy7809         160 FCSGSREHEATRRVRCELLSHMDGVGTG------SGDKGVLVLAATNHPW-----DLDEALKRRFE  214 (343)
Q Consensus       160 l~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~v~vI~ttn~~~-----~l~~~l~~rf~  214 (343)
                      .         ..+.++.|++.|.+..-.      .-+..++||+|.|..+     .|++++++||-
T Consensus        74 a---------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~  130 (131)
T PF07726_consen   74 A---------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM  130 (131)
T ss_dssp             S----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred             C---------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence            4         557788888887642211      1245789999999876     58899999883

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>KOG0741|consensus

Probab=99.14  E-value=2.3e-10  Score=107.94  Aligned_cols=130  Identities=22%  Similarity=0.350  Sum_probs=93.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc-CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC-C
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-S  164 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~-~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-~  164 (343)
                      .+-.++||.||||+|||+||-.+|...+.||+.+- +.++.+..-...-..+..+|..|+...-+||++|+++.|+.- +
T Consensus       536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp  615 (744)
T KOG0741|consen  536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP  615 (744)
T ss_pred             CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc
Confidence            45578999999999999999999999999998764 445554433334556999999999988899999999999762 3


Q ss_pred             CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH-HHhccccCcch
Q psy7809         165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE-ALKRRFEKRIS  218 (343)
Q Consensus       165 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~-~l~~rf~~~i~  218 (343)
                      -+-..+..++.+|+..+......  ..+.+|++||+..+-|.. .+...|+..++
T Consensus       616 IGPRfSN~vlQaL~VllK~~ppk--g~kLli~~TTS~~~vL~~m~i~~~F~~~i~  668 (744)
T KOG0741|consen  616 IGPRFSNLVLQALLVLLKKQPPK--GRKLLIFGTTSRREVLQEMGILDCFSSTIH  668 (744)
T ss_pred             cCchhhHHHHHHHHHHhccCCCC--CceEEEEecccHHHHHHHcCHHHhhhheee
Confidence            33345666777777777654332  346788888887554432 33346665554

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.14  E-value=1.8e-11  Score=104.30  Aligned_cols=45  Identities=38%  Similarity=0.629  Sum_probs=37.5

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      |+||+||+.+|++|.-...              .+.++||+||||||||++|+++...+
T Consensus         2 f~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen    2 FSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             hhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999997664              34699999999999999999999765

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.1e-10  Score=116.54  Aligned_cols=200  Identities=22%  Similarity=0.273  Sum_probs=126.7

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCccccc----
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLTSK----  128 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~~~----  128 (343)
                      +.|+||+++...+...+......   .....+|..++||.||+|+|||-||+++|..+.   ..++.++++++..+    
T Consensus       491 ~rViGQd~AV~avs~aIrraRaG---L~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS  567 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAG---LGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS  567 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence            46899999999999888642110   001124556788999999999999999999996   78999999887643    


Q ss_pred             --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC--CCCC----CCCCEE
Q psy7809         129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV--GTGS----GDKGVL  194 (343)
Q Consensus       129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~--~~~~----~~~~v~  194 (343)
                              |+|.-+  -..+-...+....+||+||||++-         +..+++.|++.||.=  ....    .-++.+
T Consensus       568 rLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA---------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNti  636 (786)
T COG0542         568 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA---------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTI  636 (786)
T ss_pred             HHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc---------CHHHHHHHHHHhcCCeeecCCCCEEecceeE
Confidence                    333222  112333344555789999999755         668999999999831  1111    123688


Q ss_pred             EEEecCCCCC----------------------------CCHHHhccccCcch--------HHHHHhhhhcCC-------C
Q psy7809         195 VLAATNHPWD----------------------------LDEALKRRFEKRIS--------PIQIIGLCLGEI-------R  231 (343)
Q Consensus       195 vI~ttn~~~~----------------------------l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~  231 (343)
                      ||.|+|--..                            ..|.++.|++..|.        ..+|+...+...       .
T Consensus       637 IImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~  716 (786)
T COG0542         637 IIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERG  716 (786)
T ss_pred             EEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999983210                            23555557775554        334444433322       1


Q ss_pred             CC---CcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         232 KD---PNVDVATLSKQLI--GYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       232 ~~---~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      ..   ++.-.+.|+...-  .|-++-|+.++++-+...+.+..
T Consensus       717 i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i  759 (786)
T COG0542         717 ITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI  759 (786)
T ss_pred             ceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence            11   2223445665542  45577888888877777666554

>PRK04132 replication factor C small subunit; Provisional

Probab=99.12  E-value=3.7e-09  Score=107.81  Aligned_cols=150  Identities=15%  Similarity=0.094  Sum_probs=101.1

Q ss_pred             ceEEEEc--CCCchHHHHHHHHHHHh-----CCceEEEcCCccccccccchHHHHHHHHHHHHHcC------CcEEEEcc
Q psy7809          90 RGILLFG--PPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSKHYGESEKLVRALFETARARA------PAVIFIDE  156 (343)
Q Consensus        90 ~~vll~G--p~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~------p~il~iDe  156 (343)
                      -+-+..|  |++.||||+|+++|+++     +.+++++++++..+.      ..++.+...+....      ..|+||||
T Consensus       565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDE  638 (846)
T PRK04132        565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDE  638 (846)
T ss_pred             hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence            3456778  99999999999999998     457999999875332      23555444333222      35999999


Q ss_pred             cccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHH---HHhhhhcC
Q psy7809         157 VDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQ---IIGLCLGE  229 (343)
Q Consensus       157 id~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~---il~~~~~~  229 (343)
                      +|.|.         ...++.|+..|+..     +.++.+|++||+++.+.++++||+...-.    ..+   .++..+..
T Consensus       639 aD~Lt---------~~AQnALLk~lEep-----~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~  704 (846)
T PRK04132        639 ADALT---------QDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN  704 (846)
T ss_pred             cccCC---------HHHHHHHHHHhhCC-----CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHh
Confidence            99992         35677899998865     34788999999999999999997543322    222   23333333


Q ss_pred             CCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         230 IRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       230 ~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      ... .++..+..++..+.|- .+..-++++.+
T Consensus       705 Egi~i~~e~L~~Ia~~s~GD-lR~AIn~Lq~~  735 (846)
T PRK04132        705 EGLELTEEGLQAILYIAEGD-MRRAINILQAA  735 (846)
T ss_pred             cCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence            222 2455678888888873 44444555543

>smart00350 MCM minichromosome maintenance proteins

Probab=99.11  E-value=9.8e-10  Score=108.00  Aligned_cols=150  Identities=24%  Similarity=0.246  Sum_probs=85.0

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE----cCCccccccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV----LPSSLTSKHY  130 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v----~~~~l~~~~~  130 (343)
                      ..+.|++.+|..+.-.+...-. +....+ ......++||+|+||+|||++|++++.......+..    ++..+.....
T Consensus       203 p~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~  281 (509)
T smart00350      203 PSIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT  281 (509)
T ss_pred             ccccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence            4678888888877765543210 000000 123345899999999999999999998875443222    2222211110


Q ss_pred             cch--HH-HH-HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC---C-----CCCCCCEEEEEe
Q psy7809         131 GES--EK-LV-RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG---T-----GSGDKGVLVLAA  198 (343)
Q Consensus       131 ~~~--~~-~i-~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~---~-----~~~~~~v~vI~t  198 (343)
                      ...  .. .+ ...+..   ...++++|||+|.+-         ......|++.|+.-.   .     ..-+.++.||+|
T Consensus       282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~---------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa  349 (509)
T smart00350      282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMD---------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAA  349 (509)
T ss_pred             EccCcceEEecCccEEe---cCCCEEEEechhhCC---------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEE
Confidence            000  00 00 000111   123699999999883         234445555554211   0     001347889999


Q ss_pred             cCCCC-------------CCCHHHhccccCcch
Q psy7809         199 TNHPW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       199 tn~~~-------------~l~~~l~~rf~~~i~  218 (343)
                      +|..+             .|++++++||+-.+.
T Consensus       350 ~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~  382 (509)
T smart00350      350 ANPIGGRYDPKLTPEENIDLPAPILSRFDLLFV  382 (509)
T ss_pred             eCCCCcccCCCcChhhccCCChHHhCceeeEEE
Confidence            99753             589999999977554

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=99.09  E-value=2.4e-09  Score=96.16  Aligned_cols=201  Identities=16%  Similarity=0.171  Sum_probs=116.9

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---------CceEEEcC
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------STFFNVLP  122 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------~~~~~v~~  122 (343)
                      .-.|=.......+.+.|.+.+..|..         ....++||+|++|.|||++++.++....         .+++.+.+
T Consensus        33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~  103 (302)
T PF05621_consen   33 ADRWIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM  103 (302)
T ss_pred             cCCeecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec
Confidence            34454444456666777777766632         3456899999999999999999987542         35666654


Q ss_pred             Cccccc--------------c--ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         123 SSLTSK--------------H--YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       123 ~~l~~~--------------~--~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                      +.-.+.              +  -....+....+....+..++.+|+|||++.++.+...  ....+++.| +.+   ++
T Consensus       104 P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~--~qr~~Ln~L-K~L---~N  177 (302)
T PF05621_consen  104 PPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR--KQREFLNAL-KFL---GN  177 (302)
T ss_pred             CCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH--HHHHHHHHH-HHH---hh
Confidence            322110              0  0112233344455666777889999999997653211  122233322 222   21


Q ss_pred             CCCCCCEEEEEecCCCC--CCCHHHhccccCcch--------HHHHHhhhhcCCCC--CCc----ccHHHHHHHccCCCH
Q psy7809         187 GSGDKGVLVLAATNHPW--DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK--DPN----VDVATLSKQLIGYSG  250 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~~~--~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~--~~~----~~~~~la~~t~g~s~  250 (343)
                      .- .-.++.+||..-..  .-|+.+.+||.-...        ...++..+-....+  .+.    .-...|-..|+| +-
T Consensus       178 eL-~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G-~i  255 (302)
T PF05621_consen  178 EL-QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG-LI  255 (302)
T ss_pred             cc-CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-ch
Confidence            11 22456666543222  236788888876554        33444444333322  122    223467778888 47


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy7809         251 SDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       251 ~di~~l~~~A~~~a~~r~~  269 (343)
                      ++|..++..|...|++...
T Consensus       256 G~l~~ll~~aA~~AI~sG~  274 (302)
T PF05621_consen  256 GELSRLLNAAAIAAIRSGE  274 (302)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            8999999999999987643

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK12377 putative replication protein; Provisional

Probab=99.09  E-value=5e-10  Score=99.37  Aligned_cols=131  Identities=16%  Similarity=0.124  Sum_probs=74.4

Q ss_pred             cCCCCCCCccc----ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          49 TDTGVGWDDIA----GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        49 ~~~~~~~~~l~----G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      .....+|+++.    |+..+...+..++....          ....+++|+||||||||+||.++|+++   +..+++++
T Consensus        67 ~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~  136 (248)
T PRK12377         67 LHRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT  136 (248)
T ss_pred             ccccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            34456788875    33344555554443221          234689999999999999999999887   56677777


Q ss_pred             CCccccccccchH--HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         122 PSSLTSKHYGESE--KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       122 ~~~l~~~~~~~~~--~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ..++.........  .....++...  ....+|+|||++....    +.....   .|...++.....    ...+|.||
T Consensus       137 ~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~----s~~~~~---~l~~ii~~R~~~----~~ptiitS  203 (248)
T PRK12377        137 VPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE----TKNEQV---VLNQIIDRRTAS----MRSVGMLT  203 (248)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC----CHHHHH---HHHHHHHHHHhc----CCCEEEEc
Confidence            6665543211100  0111222222  3457999999976532    122223   344444433221    23467788


Q ss_pred             CCC
Q psy7809         200 NHP  202 (343)
Q Consensus       200 n~~  202 (343)
                      |..
T Consensus       204 Nl~  206 (248)
T PRK12377        204 NLN  206 (248)
T ss_pred             CCC
Confidence            864

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.09  E-value=4.1e-09  Score=96.90  Aligned_cols=163  Identities=19%  Similarity=0.222  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------------------eEE
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------------------FFN  119 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------------------~~~  119 (343)
                      ++.+.+.+...+...           +-+..+||+||+|+||+++|.++|+.+-+.                     ++.
T Consensus         9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~   77 (319)
T PRK08769          9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL   77 (319)
T ss_pred             HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence            455566666555432           456689999999999999999999876432                     222


Q ss_pred             E--cCCccccc-cccchHHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         120 V--LPSSLTSK-HYGESEKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       120 v--~~~~l~~~-~~~~~~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      +  .+.+-..+ ...-..+.++.+.+.+...    ...|++||++|.|         .....|.|++.|+..     +.+
T Consensus        78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~  143 (319)
T PRK08769         78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI---------NRAACNALLKTLEEP-----SPG  143 (319)
T ss_pred             EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh---------CHHHHHHHHHHhhCC-----CCC
Confidence            2  11100000 0001233455555544332    2359999999988         446788999999864     447


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCH
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSG  250 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~  250 (343)
                      +++|.+|+.++.|.+.++||+...-.    ..++....... . .+..+...++..+.|-.+
T Consensus       144 ~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~~~~~a~~~~~l~~G~p~  203 (319)
T PRK08769        144 RYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-VSERAAQEALDAARGHPG  203 (319)
T ss_pred             CeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-CChHHHHHHHHHcCCCHH
Confidence            78999999999999999998765443    45555444432 2 223335567777777433

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.09  E-value=1.1e-09  Score=108.74  Aligned_cols=112  Identities=15%  Similarity=0.177  Sum_probs=75.3

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE-Ec-
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN-VL-  121 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~-v~-  121 (343)
                      ..+.+++.+.++++|+|+++.++.+..++......       ..+...++|+||+|||||++++.+|++++..+++ .+ 
T Consensus        72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np  144 (637)
T TIGR00602        72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP  144 (637)
T ss_pred             CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence            35788999999999999999999998887543211       1233458999999999999999999998865433 21 


Q ss_pred             --CCccccc------------cccchHHHHHHHHHHHHH----------cCCcEEEEcccccccC
Q psy7809         122 --PSSLTSK------------HYGESEKLVRALFETARA----------RAPAVIFIDEVDAFCS  162 (343)
Q Consensus       122 --~~~l~~~------------~~~~~~~~i~~~~~~a~~----------~~p~il~iDeid~l~~  162 (343)
                        +......            .+......+..++..+..          ....||+|||++.++.
T Consensus       145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~  209 (637)
T TIGR00602       145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY  209 (637)
T ss_pred             hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch
Confidence              1111000            011223445555555542          2346999999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.04  E-value=6.1e-09  Score=94.12  Aligned_cols=184  Identities=18%  Similarity=0.183  Sum_probs=99.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCC-ceEE---EcCC----c----ccc----ccccc-hHHHHHHH---H-HHHHHc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGS-TFFN---VLPS----S----LTS----KHYGE-SEKLVRAL---F-ETARAR  147 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~---v~~~----~----l~~----~~~~~-~~~~i~~~---~-~~a~~~  147 (343)
                      +..++|+||+|+|||++++.++..+.. .+..   +.+.    +    +..    ...+. ....+..+   + ......
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~  122 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG  122 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            346889999999999999999998763 2221   1110    0    000    00011 11112222   2 222345


Q ss_pred             CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC---CC----CHHHhccccCcch--
Q psy7809         148 APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW---DL----DEALKRRFEKRIS--  218 (343)
Q Consensus       148 ~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~---~l----~~~l~~rf~~~i~--  218 (343)
                      .+.+|+|||++.+..      .....+..+...    .... ...+.|+.+. .++   .+    ...+.+|+...+.  
T Consensus       123 ~~~vliiDe~~~l~~------~~~~~l~~l~~~----~~~~-~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l~  190 (269)
T TIGR03015       123 KRALLVVDEAQNLTP------ELLEELRMLSNF----QTDN-AKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHLG  190 (269)
T ss_pred             CCeEEEEECcccCCH------HHHHHHHHHhCc----ccCC-CCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeCC
Confidence            567999999998731      111122222221    1111 1123333333 222   11    1234455544443  


Q ss_pred             ------HHHHHhhhhcCC-----CCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy7809         219 ------PIQIIGLCLGEI-----RKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNN  287 (343)
Q Consensus       219 ------r~~il~~~~~~~-----~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~  287 (343)
                            -..++...+...     ...++..++.|++.+.|. ++.|..+|..|+..|..+...                 
T Consensus       191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~-----------------  252 (269)
T TIGR03015       191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKR-----------------  252 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCC-----------------
Confidence                  233344333322     123456688899999996 677999999998888765321                 


Q ss_pred             CCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         288 IGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                                   .       |+.+++..++..+.
T Consensus       253 -------------~-------i~~~~v~~~~~~~~  267 (269)
T TIGR03015       253 -------------E-------IGGEEVREVIAEID  267 (269)
T ss_pred             -------------C-------CCHHHHHHHHHHhh
Confidence                         3       99999999998764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.04  E-value=1.3e-08  Score=94.43  Aligned_cols=147  Identities=20%  Similarity=0.168  Sum_probs=92.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCce-------------------------EEEcCCccc---------------
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTF-------------------------FNVLPSSLT---------------  126 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-------------------------~~v~~~~l~---------------  126 (343)
                      +.+.++||+||+|+||+++|+.+|+.+.+..                         +.+.+....               
T Consensus        19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~   98 (342)
T PRK06964         19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA   98 (342)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence            5667899999999999999999998875421                         222111000               


Q ss_pred             ---cc----c-ccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809         127 ---SK----H-YGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL  194 (343)
Q Consensus       127 ---~~----~-~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  194 (343)
                         ++    . ..-..+.++.+...+..    ....|++||++|.|         .....|.|++.+++-     +.+++
T Consensus        99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~t~  164 (342)
T PRK06964         99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL---------NVAAANALLKTLEEP-----PPGTV  164 (342)
T ss_pred             hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc---------CHHHHHHHHHHhcCC-----CcCcE
Confidence               00    0 00112345555544422    22459999999998         446788999999854     55889


Q ss_pred             EEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHH
Q psy7809         195 VLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSD  252 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~d  252 (343)
                      +|.+|++++.|.+.++||+...-.    ..++...+... ...   +...++..+.| +++.
T Consensus       165 fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~---~~~~~l~~~~G-sp~~  221 (342)
T PRK06964        165 FLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA---DADALLAEAGG-APLA  221 (342)
T ss_pred             EEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC---hHHHHHHHcCC-CHHH
Confidence            999999999999999998754333    44554444332 221   12345566656 4443

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.03  E-value=9.2e-09  Score=94.47  Aligned_cols=162  Identities=19%  Similarity=0.136  Sum_probs=102.1

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----------------------e
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----------------------F  117 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----------------------~  117 (343)
                      +....+.+...+...           +.+..+||+||.|+||+++|+.+|+.+-+.                       +
T Consensus         8 l~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~   76 (319)
T PRK06090          8 LVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL   76 (319)
T ss_pred             HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence            455566666555432           556789999999999999999999876431                       2


Q ss_pred             EEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809         118 FNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV  193 (343)
Q Consensus       118 ~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v  193 (343)
                      +.+.+.. .++  .-..+.++.+...+..    ....|++||++|.|         .....|.|++.+++-     +.++
T Consensus        77 ~~i~p~~-~~~--~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m---------~~~AaNaLLKtLEEP-----p~~t  139 (319)
T PRK06090         77 HVIKPEK-EGK--SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM---------NESASNALLKTLEEP-----APNC  139 (319)
T ss_pred             EEEecCc-CCC--cCCHHHHHHHHHHHhhCcccCCceEEEecchhhh---------CHHHHHHHHHHhcCC-----CCCe
Confidence            2232211 000  0122344554444422    23469999999988         446788999999854     5578


Q ss_pred             EEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH
Q psy7809         194 LVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD  255 (343)
Q Consensus       194 ~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~  255 (343)
                      ++|.+|+.++.|-|.++||+...-.    ..++...... ....   ....++..+.| ++.....
T Consensus       140 ~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~-~~~~---~~~~~l~l~~G-~p~~A~~  200 (319)
T PRK06090        140 LFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKG-QGIT---VPAYALKLNMG-SPLKTLA  200 (319)
T ss_pred             EEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHH-cCCc---hHHHHHHHcCC-CHHHHHH
Confidence            9999999999999999998765433    4455444433 2221   23455666666 4443333

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.02  E-value=1.6e-09  Score=95.96  Aligned_cols=131  Identities=15%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             cCCCCCCCcccc----cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          49 TDTGVGWDDIAG----LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        49 ~~~~~~~~~l~G----~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      .....+|+++.-    +..+...+..++...          .....+++|+|++|||||+|+.++|.++   +..+++++
T Consensus        65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~----------~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it  134 (244)
T PRK07952         65 LHQNCSFENYRVECEGQMNALSKARQYVEEF----------DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT  134 (244)
T ss_pred             cccCCccccccCCCchHHHHHHHHHHHHHhh----------ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            345678888752    233444444444221          1223589999999999999999999988   66788887


Q ss_pred             CCccccccccch---HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         122 PSSLTSKHYGES---EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       122 ~~~l~~~~~~~~---~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ..++........   ......++....  ..++|+|||++....    ......++..++..-   +.    .+..+|.|
T Consensus       135 ~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~----s~~~~~~l~~Ii~~R---y~----~~~~tiit  201 (244)
T PRK07952        135 VADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE----SRYEKVIINQIVDRR---SS----SKRPTGML  201 (244)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC----CHHHHHHHHHHHHHH---Hh----CCCCEEEe
Confidence            777664322110   111223333322  457999999987632    223334444444432   11    12357777


Q ss_pred             cCCC
Q psy7809         199 TNHP  202 (343)
Q Consensus       199 tn~~  202 (343)
                      ||..
T Consensus       202 SNl~  205 (244)
T PRK07952        202 TNSN  205 (244)
T ss_pred             CCCC
Confidence            7754

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.01  E-value=5.9e-10  Score=106.17  Aligned_cols=145  Identities=23%  Similarity=0.353  Sum_probs=94.9

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL  125 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l  125 (343)
                      .....+|++|+|......++.+.+...          .....+|||.|.+||||..+|++|=+..   +.||+.++|..+
T Consensus       238 ~~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi  307 (560)
T COG3829         238 LKAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI  307 (560)
T ss_pred             cccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence            344578999999887777776655432          1556789999999999999999996554   679999999765


Q ss_pred             cccc---------ccchHHH----HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCC
Q psy7809         126 TSKH---------YGESEKL----VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTG  187 (343)
Q Consensus       126 ~~~~---------~~~~~~~----i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~  187 (343)
                      -...         .|.....    -..+|..|..   +-||||||..|         +..++..|+..++.     +.+.
T Consensus       308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem---------pl~LQaKLLRVLQEkei~rvG~t  375 (560)
T COG3829         308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM---------PLPLQAKLLRVLQEKEIERVGGT  375 (560)
T ss_pred             CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC---------CHHHHHHHHHHHhhceEEecCCC
Confidence            4321         1111111    1234444433   58999999766         55777888887763     2222


Q ss_pred             C-CCCCEEEEEecCCCCCCCHHHhc-cccCcc
Q psy7809         188 S-GDKGVLVLAATNHPWDLDEALKR-RFEKRI  217 (343)
Q Consensus       188 ~-~~~~v~vI~ttn~~~~l~~~l~~-rf~~~i  217 (343)
                      . .+..|.||++||.  .|.+.+.. +|..-+
T Consensus       376 ~~~~vDVRIIAATN~--nL~~~i~~G~FReDL  405 (560)
T COG3829         376 KPIPVDVRIIAATNR--NLEKMIAEGTFREDL  405 (560)
T ss_pred             CceeeEEEEEeccCc--CHHHHHhcCcchhhh
Confidence            2 1236889999997  34444444 444433

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=98.99  E-value=4.9e-09  Score=87.80  Aligned_cols=122  Identities=23%  Similarity=0.372  Sum_probs=71.7

Q ss_pred             ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc----
Q psy7809          58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY----  130 (343)
Q Consensus        58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~----  130 (343)
                      |+|.....+.+.+.+....          ..+.+|||+|++||||+.+|++|-+..   +.+|+.++|..+.....    
T Consensus         1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L   70 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL   70 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence            3565555555555443221          345789999999999999999998765   46899999987643211    


Q ss_pred             -cch-------HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-----CCCC-CCCCEEEE
Q psy7809         131 -GES-------EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV-----GTGS-GDKGVLVL  196 (343)
Q Consensus       131 -~~~-------~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~-~~~~v~vI  196 (343)
                       |..       ...-..+|..|.   .+.||||||+.|         +..++..|+..|+.-     .... ...++.||
T Consensus        71 FG~~~~~~~~~~~~~~G~l~~A~---~GtL~Ld~I~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI  138 (168)
T PF00158_consen   71 FGHEKGAFTGARSDKKGLLEQAN---GGTLFLDEIEDL---------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRII  138 (168)
T ss_dssp             HEBCSSSSTTTSSEBEHHHHHTT---TSEEEEETGGGS----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEE
T ss_pred             hccccccccccccccCCceeecc---ceEEeecchhhh---------HHHHHHHHHHHHhhchhccccccccccccceEE
Confidence             100       000113344333   379999999988         446666777777621     1110 12368889


Q ss_pred             EecCC
Q psy7809         197 AATNH  201 (343)
Q Consensus       197 ~ttn~  201 (343)
                      ++|+.
T Consensus       139 ~st~~  143 (168)
T PF00158_consen  139 ASTSK  143 (168)
T ss_dssp             EEESS
T ss_pred             eecCc
Confidence            99886

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>KOG1514|consensus

Probab=98.99  E-value=2.2e-08  Score=97.72  Aligned_cols=207  Identities=19%  Similarity=0.226  Sum_probs=120.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC----------CceEEEcCCccccc----------cccch------HHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG----------STFFNVLPSSLTSK----------HYGES------EKLVRALFET  143 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~----------~~~~~v~~~~l~~~----------~~~~~------~~~i~~~~~~  143 (343)
                      ..+++.|-||||||.+++.+-+++.          ..+++++.-.+.+.          ..+..      -..+..-|..
T Consensus       423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~  502 (767)
T KOG1514|consen  423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV  502 (767)
T ss_pred             eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence            3688999999999999999977653          45677776555431          01110      1111112220


Q ss_pred             H-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----
Q psy7809         144 A-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----  218 (343)
Q Consensus       144 a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----  218 (343)
                      . ....++||+|||+|.|+..      ...++..|..+...     +..+++||+.+|..+....-+..|...++.    
T Consensus       503 ~k~~~~~~VvLiDElD~Lvtr------~QdVlYn~fdWpt~-----~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi  571 (767)
T KOG1514|consen  503 PKPKRSTTVVLIDELDILVTR------SQDVLYNIFDWPTL-----KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRI  571 (767)
T ss_pred             CCCCCCCEEEEeccHHHHhcc------cHHHHHHHhcCCcC-----CCCceEEEEecccccCHHHHhccchhhhccceee
Confidence            0 1234679999999999753      23455555555432     245788888888766433222212222221    


Q ss_pred             ---------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy7809         219 ---------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSG--SDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNN  287 (343)
Q Consensus       219 ---------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~--~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~  287 (343)
                               ..+|+...+..........+.-+|+..+..||  +--.++|++|...|..+...  +              
T Consensus       572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~--~--------------  635 (767)
T KOG1514|consen  572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVK--G--------------  635 (767)
T ss_pred             ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccc--c--------------
Confidence                     66777777766533333445556666655443  22347899999998877652  0              


Q ss_pred             CCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy7809         288 IGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWN  337 (343)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~  337 (343)
                           .         ....-.|+.-||.+|+..+..+.-..-++..-...
T Consensus       636 -----k---------~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~  671 (767)
T KOG1514|consen  636 -----K---------LAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQ  671 (767)
T ss_pred             -----c---------ccccceeehHHHHHHHHHHhhhhHHHHhcchHHHH
Confidence                 0         00011388899999999997654444444443333

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.99  E-value=8.6e-09  Score=102.75  Aligned_cols=128  Identities=19%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCccccccccchHHHHHHHHHHH---------HHcCCcEEEEccc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSKHYGESEKLVRALFETA---------RARAPAVIFIDEV  157 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~l~~~~~~~~~~~i~~~~~~a---------~~~~p~il~iDei  157 (343)
                      -.+|||.|+||||||++|++++..+..  +|+.+.+.......+|..  .+...+...         .....++|||||+
T Consensus        16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi   93 (589)
T TIGR02031        16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA   93 (589)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence            358999999999999999999998764  577776432222222321  011101000         0012259999999


Q ss_pred             ccccCCCCchhhhHHHHHHHhhhcccCC-------C-CCCCCCEEEEEecCCCC---CCCHHHhccccCcch--------
Q psy7809         158 DAFCSGSREHEATRRVRCELLSHMDGVG-------T-GSGDKGVLVLAATNHPW---DLDEALKRRFEKRIS--------  218 (343)
Q Consensus       158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~-------~-~~~~~~v~vI~ttn~~~---~l~~~l~~rf~~~i~--------  218 (343)
                      +.+         ...++..|+..|+.-.       . ...+.++.||+|+|..+   .+.+.++.||...+.        
T Consensus        94 ~rl---------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~  164 (589)
T TIGR02031        94 NLL---------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQD  164 (589)
T ss_pred             hhC---------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHH
Confidence            888         3456667777665211       0 01134688999999765   689999999988554        


Q ss_pred             -HHHHHhhhh
Q psy7809         219 -PIQIIGLCL  227 (343)
Q Consensus       219 -r~~il~~~~  227 (343)
                       |.+|++..+
T Consensus       165 er~eil~~~~  174 (589)
T TIGR02031       165 LRVEIVRRER  174 (589)
T ss_pred             HHHHHHHHHH
Confidence             677777655

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1e-09  Score=103.26  Aligned_cols=47  Identities=32%  Similarity=0.559  Sum_probs=40.7

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..|.||+||+..|+.+....              ..++++|++||||||||++|+.+...+
T Consensus       176 ~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL  222 (490)
T COG0606         176 PDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL  222 (490)
T ss_pred             cchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence            47889999999999999766              356799999999999999999887544

>PRK13531 regulatory ATPase RavA; Provisional

Probab=98.97  E-value=1.4e-09  Score=103.84  Aligned_cols=139  Identities=17%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCc-cccccccch
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSS-LTSKHYGES  133 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~-l~~~~~~~~  133 (343)
                      .|+|.+++++.+...+.              ...++||+||||||||++|++++..++.  +|..+.+.- .....+|..
T Consensus        21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l   86 (498)
T PRK13531         21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL   86 (498)
T ss_pred             hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence            57888888888876663              4468999999999999999999987753  344333221 111111111


Q ss_pred             -HHHH--HHHHHHHHHc---CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-CCC----CCCCEEEEEecCCC
Q psy7809         134 -EKLV--RALFETARAR---APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-TGS----GDKGVLVLAATNHP  202 (343)
Q Consensus       134 -~~~i--~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~~----~~~~v~vI~ttn~~  202 (343)
                       -...  ..-|......   ...+||+|||..+         .....+.|+..|+.-. ...    +-...+++++||..
T Consensus        87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra---------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L  157 (498)
T PRK13531         87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL  157 (498)
T ss_pred             HHhhhhhcCchhhhcCCccccccEEeecccccC---------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence             0000  1112111100   2249999999655         5577788888884321 100    01123344444633


Q ss_pred             CC---CCHHHhccccCcch
Q psy7809         203 WD---LDEALKRRFEKRIS  218 (343)
Q Consensus       203 ~~---l~~~l~~rf~~~i~  218 (343)
                      ..   ..+++..||..++.
T Consensus       158 PE~g~~leAL~DRFliri~  176 (498)
T PRK13531        158 PEADSSLEALYDRMLIRLW  176 (498)
T ss_pred             cccCCchHHhHhhEEEEEE
Confidence            21   23588888855554

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.97  E-value=2.2e-08  Score=93.10  Aligned_cols=155  Identities=23%  Similarity=0.313  Sum_probs=98.5

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC----------
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP----------  122 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~----------  122 (343)
                      ..|.-++|++.++..|--....|            .-.++||.|+.|+|||+++|+++..|.-......|          
T Consensus        14 ~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~   81 (423)
T COG1239          14 LPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE   81 (423)
T ss_pred             cchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence            45778999999999887544332            34689999999999999999999887422111111          


Q ss_pred             ---C-------------------ccccccccchHH-H-----HHHHHH-HHHHcC--------CcEEEEcccccccCCCC
Q psy7809         123 ---S-------------------SLTSKHYGESEK-L-----VRALFE-TARARA--------PAVIFIDEVDAFCSGSR  165 (343)
Q Consensus       123 ---~-------------------~l~~~~~~~~~~-~-----i~~~~~-~a~~~~--------p~il~iDeid~l~~~~~  165 (343)
                         .                   .+.....+.++. .     +..+.. --+..+        ..||++||+..|     
T Consensus        82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-----  156 (423)
T COG1239          82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-----  156 (423)
T ss_pred             hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc-----
Confidence               0                   011111222222 1     111111 001111        259999999877     


Q ss_pred             chhhhHHHHHHHhhhcc---------cCCCCCCCCCEEEEEecCCC-CCCCHHHhccccCcch---------HHHHHhhh
Q psy7809         166 EHEATRRVRCELLSHMD---------GVGTGSGDKGVLVLAATNHP-WDLDEALKRRFEKRIS---------PIQIIGLC  226 (343)
Q Consensus       166 ~~~~~~~~~~~ll~~l~---------~~~~~~~~~~v~vI~ttn~~-~~l~~~l~~rf~~~i~---------r~~il~~~  226 (343)
                          ..+++..|+..+.         +++-.. +.++++|+|+|.- ..|-+.|+.||...+.         |.+|+++.
T Consensus       157 ----~d~lvd~LLd~aaeG~n~vereGisi~h-pa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~  231 (423)
T COG1239         157 ----DDHLVDALLDVAAEGVNDVEREGISIRH-PARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR  231 (423)
T ss_pred             ----cHHHHHHHHHHHHhCCceeeeCceeecc-CccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence                4466777777654         232222 5589999999986 4688999999987775         77777766


Q ss_pred             hcC
Q psy7809         227 LGE  229 (343)
Q Consensus       227 ~~~  229 (343)
                      +..
T Consensus       232 ~~f  234 (423)
T COG1239         232 LAF  234 (423)
T ss_pred             HHh
Confidence            553

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=98.96  E-value=1.4e-09  Score=103.51  Aligned_cols=141  Identities=24%  Similarity=0.382  Sum_probs=91.2

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH  129 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~  129 (343)
                      ....+++|.....+++.+.+...          .....+|||+|++||||-.+||+|-...   +.||+.++|..+....
T Consensus       138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l  207 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL  207 (464)
T ss_pred             cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence            45778999988888888776532          1455689999999999999999996655   5699999997765321


Q ss_pred             -----ccchH----H---HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCCCC-CC
Q psy7809         130 -----YGESE----K---LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTGSG-DK  191 (343)
Q Consensus       130 -----~~~~~----~---~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~~~-~~  191 (343)
                           +|...    .   .-...|+.|.   .+.||||||..|         ...++..|+..++.     +.+... .-
T Consensus       208 ~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~m---------pl~~Q~kLLRvLqe~~~~rvG~~~~i~v  275 (464)
T COG2204         208 LESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEM---------PLELQVKLLRVLQEREFERVGGNKPIKV  275 (464)
T ss_pred             HHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccC---------CHHHHHHHHHHHHcCeeEecCCCcccce
Confidence                 11110    0   0111333332   369999999777         44667777777762     322211 22


Q ss_pred             CEEEEEecCCCCCCCHHHhc-cccCcc
Q psy7809         192 GVLVLAATNHPWDLDEALKR-RFEKRI  217 (343)
Q Consensus       192 ~v~vI~ttn~~~~l~~~l~~-rf~~~i  217 (343)
                      .|.||++||.  +|...+.. +|..-+
T Consensus       276 dvRiIaaT~~--dL~~~v~~G~FReDL  300 (464)
T COG2204         276 DVRIIAATNR--DLEEEVAAGRFREDL  300 (464)
T ss_pred             eeEEEeecCc--CHHHHHHcCCcHHHH
Confidence            5789999997  44444444 444333

>KOG0745|consensus

Probab=98.95  E-value=2.5e-09  Score=98.94  Aligned_cols=94  Identities=31%  Similarity=0.506  Sum_probs=71.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccch-HHHHHHHHHHHH----HcCCcEEEEcccccccCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGES-EKLVRALFETAR----ARAPAVIFIDEVDAFCSG  163 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~~-~~~i~~~~~~a~----~~~p~il~iDeid~l~~~  163 (343)
                      .+|||.||+|+|||.||+.+|+-++.||...+|..+.. .|+|+- +..+..++..|.    ..+..|+||||+|+|...
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~  306 (564)
T KOG0745|consen  227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK  306 (564)
T ss_pred             ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence            47999999999999999999999999999999998874 566663 556666666552    234579999999999842


Q ss_pred             CC-----chhhhHHHHHHHhhhccc
Q psy7809         164 SR-----EHEATRRVRCELLSHMDG  183 (343)
Q Consensus       164 ~~-----~~~~~~~~~~~ll~~l~~  183 (343)
                      ..     ......-++..|++.+++
T Consensus       307 ~~~i~~~RDVsGEGVQQaLLKllEG  331 (564)
T KOG0745|consen  307 AESIHTSRDVSGEGVQQALLKLLEG  331 (564)
T ss_pred             CccccccccccchhHHHHHHHHhcc
Confidence            11     122234577788888875

>TIGR01817 nifA Nif-specific regulatory protein

Probab=98.93  E-value=1.9e-08  Score=99.78  Aligned_cols=131  Identities=24%  Similarity=0.280  Sum_probs=82.7

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT  126 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~  126 (343)
                      .+...+++++|.....+.+.+.+....          ....+|||+|++||||+++|++|....   +.+|+.++|..+.
T Consensus       190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~  259 (534)
T TIGR01817       190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS  259 (534)
T ss_pred             cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence            344678899999888888777665321          345689999999999999999998775   4689999998764


Q ss_pred             cccc-----cchHHH-------HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-
Q psy7809         127 SKHY-----GESEKL-------VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-  188 (343)
Q Consensus       127 ~~~~-----~~~~~~-------i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-  188 (343)
                      ....     |.....       -...+..   ...++|||||+|.|.         ...+..|+..++.-.     ... 
T Consensus       260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~---------~~~Q~~Ll~~l~~~~~~~~~~~~~  327 (534)
T TIGR01817       260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEIS---------PAFQAKLLRVLQEGEFERVGGNRT  327 (534)
T ss_pred             HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCC---------HHHHHHHHHHHhcCcEEECCCCce
Confidence            3210     000000       0001111   124699999999883         345566666664311     100 


Q ss_pred             CCCCEEEEEecCCC
Q psy7809         189 GDKGVLVLAATNHP  202 (343)
Q Consensus       189 ~~~~v~vI~ttn~~  202 (343)
                      ....+.+|++|+..
T Consensus       328 ~~~~~riI~~s~~~  341 (534)
T TIGR01817       328 LKVDVRLVAATNRD  341 (534)
T ss_pred             EeecEEEEEeCCCC
Confidence            01246788887653

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.93  E-value=5e-09  Score=98.03  Aligned_cols=192  Identities=21%  Similarity=0.277  Sum_probs=112.6

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcCCcc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLPSSL  125 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~~~l  125 (343)
                      .....+.+++|.....+.+.+.+...          .....+||++|++||||+.+|+.+...    .+.||+.+||..+
T Consensus        72 ~~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~  141 (403)
T COG1221          72 LKSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY  141 (403)
T ss_pred             ccchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence            33456788999876666666655431          145568999999999999999999533    3668999999887


Q ss_pred             ccccccc------------hHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCC-
Q psy7809         126 TSKHYGE------------SEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTG-  187 (343)
Q Consensus       126 ~~~~~~~------------~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~-  187 (343)
                      .......            ....-..+|..|..   +.||+|||+.|.         ...+..|+..|+.     +.+. 
T Consensus       142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP---------~~~Q~kLl~~le~g~~~rvG~~~  209 (403)
T COG1221         142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLP---------PEGQEKLLRVLEEGEYRRVGGSQ  209 (403)
T ss_pred             CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCC---------HhHHHHHHHHHHcCceEecCCCC
Confidence            6542211            01111223443332   699999998884         3455567777764     2221 


Q ss_pred             CCCCCEEEEEecCCCCCCCHHHhc-------cccCcch----------HHHHHhhhhc----CCCCCCcccHHHHHHHcc
Q psy7809         188 SGDKGVLVLAATNHPWDLDEALKR-------RFEKRIS----------PIQIIGLCLG----EIRKDPNVDVATLSKQLI  246 (343)
Q Consensus       188 ~~~~~v~vI~ttn~~~~l~~~l~~-------rf~~~i~----------r~~il~~~~~----~~~~~~~~~~~~la~~t~  246 (343)
                      .-...|.+|++|+.  .++..++.       ++...|.          +..+++.++.    +.......+.....+...
T Consensus       210 ~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~  287 (403)
T COG1221         210 PRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL  287 (403)
T ss_pred             CcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence            11346778888774  33333333       4444443          3333333333    222221222222222222


Q ss_pred             CC----CHHHHHHHHHHHHHHHH
Q psy7809         247 GY----SGSDIRDLCQEIILIAA  265 (343)
Q Consensus       247 g~----s~~di~~l~~~A~~~a~  265 (343)
                      .|    +-++|++++++++..+.
T Consensus       288 ~y~~pGNirELkN~Ve~~~~~~~  310 (403)
T COG1221         288 AYDWPGNIRELKNLVERAVAQAS  310 (403)
T ss_pred             hCCCCCcHHHHHHHHHHHHHHhc
Confidence            22    67999999999888774

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.91  E-value=1.6e-08  Score=100.90  Aligned_cols=53  Identities=28%  Similarity=0.426  Sum_probs=44.3

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ...|+..|++++|++++++.|...+..              ..+++|+||||||||+++++++..+.
T Consensus        23 ~~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~   75 (637)
T PRK13765         23 IEVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP   75 (637)
T ss_pred             cccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            345667899999999999998876642              24799999999999999999998765

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=98.91  E-value=3e-08  Score=92.10  Aligned_cols=138  Identities=22%  Similarity=0.219  Sum_probs=84.6

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc-
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH-  129 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~-  129 (343)
                      .+++++|.....+.+.+.+....          ....+|||+|++||||+++|+++-...   +.+|+.++|..+.... 
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~   73 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL   73 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence            46788998877777776664321          345689999999999999999997554   4689999998764211 


Q ss_pred             ----ccchH-------HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCC
Q psy7809         130 ----YGESE-------KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKG  192 (343)
Q Consensus       130 ----~~~~~-------~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~  192 (343)
                          +|...       ......+..   ...+.|||||+|.|.         ...+..|+..++.-.     .. .....
T Consensus        74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~---------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~  141 (326)
T PRK11608         74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP---------MLVQEKLLRVIEYGELERVGGSQPLQVN  141 (326)
T ss_pred             HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCC---------HHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence                01000       000112222   234689999999883         345556666654311     10 00124


Q ss_pred             EEEEEecCCC-------CCCCHHHhccc
Q psy7809         193 VLVLAATNHP-------WDLDEALKRRF  213 (343)
Q Consensus       193 v~vI~ttn~~-------~~l~~~l~~rf  213 (343)
                      +.||++|+..       ..+.+.+..||
T Consensus       142 ~RiI~~s~~~l~~l~~~g~f~~dL~~~l  169 (326)
T PRK11608        142 VRLVCATNADLPAMVAEGKFRADLLDRL  169 (326)
T ss_pred             EEEEEeCchhHHHHHHcCCchHHHHHhc
Confidence            7788887753       23446666666

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=98.90  E-value=1.4e-08  Score=94.29  Aligned_cols=115  Identities=23%  Similarity=0.276  Sum_probs=69.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc-----cchH-------HHHHHHHHHHHHcCCcE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY-----GESE-------KLVRALFETARARAPAV  151 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~-----~~~~-------~~i~~~~~~a~~~~p~i  151 (343)
                      ....+|||+|++||||+++|++|-...   +.+|+.++|..+.....     |...       ..-..+|..+   ..+.
T Consensus        20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGt   96 (329)
T TIGR02974        20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGT   96 (329)
T ss_pred             CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCE
Confidence            345689999999999999999996554   46999999987542211     0000       0001112222   2479


Q ss_pred             EEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCCEEEEEecCCC-------CCCCHHHhccc
Q psy7809         152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKGVLVLAATNHP-------WDLDEALKRRF  213 (343)
Q Consensus       152 l~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~v~vI~ttn~~-------~~l~~~l~~rf  213 (343)
                      ||||||+.|         ...++..|+..++.-.     .. .....+.+|++|+..       ..+.+.+..||
T Consensus        97 L~Ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl  162 (329)
T TIGR02974        97 LFLDELATA---------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRL  162 (329)
T ss_pred             EEeCChHhC---------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHh
Confidence            999999988         3355566666664321     10 012357788888753       12345555565

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.88  E-value=4.7e-09  Score=97.02  Aligned_cols=72  Identities=19%  Similarity=0.331  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc---hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE---SEKLVRALFETARARAPAVIFIDEVDAFC  161 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~---~~~~i~~~~~~a~~~~p~il~iDeid~l~  161 (343)
                      ...+++|+||+|+|||+|+.++|+++   +..+++++..++.......   ........+...  ....+|+|||+....
T Consensus       182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~  259 (329)
T PRK06835        182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK  259 (329)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC
Confidence            34789999999999999999999987   6778888877765432110   000011112222  234799999997663

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=98.88  E-value=1.9e-08  Score=94.88  Aligned_cols=191  Identities=19%  Similarity=0.273  Sum_probs=113.6

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK  128 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~  128 (343)
                      ...+.+++|......++.+.+....          .....|||.|.+||||..+||+|=...   ..+|+.+||..+...
T Consensus       219 ~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes  288 (550)
T COG3604         219 VLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES  288 (550)
T ss_pred             hcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence            4567789999888887777665432          455689999999999999999997655   579999999776532


Q ss_pred             cccc-hHHHHHHHHHHHHHcC--------CcEEEEcccccccCCCCchhhhHHHHHHHhhhcc-----cCCCCCC-CCCE
Q psy7809         129 HYGE-SEKLVRALFETARARA--------PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD-----GVGTGSG-DKGV  193 (343)
Q Consensus       129 ~~~~-~~~~i~~~~~~a~~~~--------p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~-----~~~~~~~-~~~v  193 (343)
                      .... .-...+..|.-|....        .+-||||||..|         .-.++..|+..++     .+.+... .-.|
T Consensus       289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ikVDV  359 (550)
T COG3604         289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRTIKVDV  359 (550)
T ss_pred             HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC---------CHHHHHHHHHHHhhcceeecCCCceeEEEE
Confidence            1100 0001222333332222        258999999766         4456667776664     3333221 1147


Q ss_pred             EEEEecCCCCCCCHHHhc-cccCcch-----------------------HHHHHhhhhcCCCC-CCccc---HHHHHHHc
Q psy7809         194 LVLAATNHPWDLDEALKR-RFEKRIS-----------------------PIQIIGLCLGEIRK-DPNVD---VATLSKQL  245 (343)
Q Consensus       194 ~vI~ttn~~~~l~~~l~~-rf~~~i~-----------------------r~~il~~~~~~~~~-~~~~~---~~~la~~t  245 (343)
                      .||++||+  +|...+.. +|..-++                       -...++.+-.+... .-.+.   ++.|.+..
T Consensus       360 RiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~  437 (550)
T COG3604         360 RVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE  437 (550)
T ss_pred             EEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence            89999997  55555555 4433222                       11112222222211 11122   33333332


Q ss_pred             -cCCCHHHHHHHHHHHHHHH
Q psy7809         246 -IGYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       246 -~g~s~~di~~l~~~A~~~a  264 (343)
                       .| +-++|++++++|...|
T Consensus       438 wPG-NVRELen~veRavlla  456 (550)
T COG3604         438 WPG-NVRELENVVERAVLLA  456 (550)
T ss_pred             CCC-cHHHHHHHHHHHHHHh
Confidence             22 6799999999999988

>PRK08116 hypothetical protein; Validated

Probab=98.87  E-value=3.6e-09  Score=95.40  Aligned_cols=102  Identities=23%  Similarity=0.300  Sum_probs=59.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc----hHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE----SEKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~----~~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      .+.+++|+|++|||||+||.++|+++   +.++++++..++.......    .......++...  ....+|+|||++..
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e  190 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAE  190 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCC
Confidence            34579999999999999999999986   6788888876655432111    011112233222  23469999999643


Q ss_pred             cCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         161 CSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      -.    .+   .....|...++.....    +..+|.|||.+
T Consensus       191 ~~----t~---~~~~~l~~iin~r~~~----~~~~IiTsN~~  221 (268)
T PRK08116        191 RD----TE---WAREKVYNIIDSRYRK----GLPTIVTTNLS  221 (268)
T ss_pred             CC----CH---HHHHHHHHHHHHHHHC----CCCEEEECCCC
Confidence            11    11   2233444444433221    23477777754

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.84  E-value=4.3e-08  Score=99.82  Aligned_cols=151  Identities=20%  Similarity=0.164  Sum_probs=84.9

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHh---------ccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-------ceEE
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFK---------GILRPWRGILLFGPPGTGKTLLAKAVASQHGS-------TFFN  119 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~---------~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-------~~~~  119 (343)
                      ..|.|.+.+|+.|.-.+..--....-..         ..++...+|||.|+||||||.+|+.+++....       ++..
T Consensus       450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~  529 (915)
T PTZ00111        450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS  529 (915)
T ss_pred             CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence            4689999999988655543211000000         11344568999999999999999999875432       2333


Q ss_pred             EcCCccccccccchHH-HH-HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-------C-CCC
Q psy7809         120 VLPSSLTSKHYGESEK-LV-RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-------T-GSG  189 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~-~i-~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-------~-~~~  189 (343)
                      +.+............. .+ ...+..   ...++++|||+|.+.         ......|++.|+.-.       . ..-
T Consensus       530 vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms---------~~~Q~aLlEaMEqqtIsI~KaGi~~tL  597 (915)
T PTZ00111        530 VGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCH---------NESRLSLYEVMEQQTVTIAKAGIVATL  597 (915)
T ss_pred             ccccchhhhcccccCcccccCCcEEE---cCCCeEEecchhhCC---------HHHHHHHHHHHhCCEEEEecCCcceec
Confidence            3222211100000000 00 000011   113699999999883         234455555554321       0 011


Q ss_pred             CCCEEEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809         190 DKGVLVLAATNHPW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       190 ~~~v~vI~ttn~~~-------------~l~~~l~~rf~~~i~  218 (343)
                      +.++.||+++|..+             .|++++++||+..+.
T Consensus       598 ~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~  639 (915)
T PTZ00111        598 KAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYL  639 (915)
T ss_pred             CCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEE
Confidence            34789999999752             378999999987654

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=98.83  E-value=8.6e-08  Score=97.92  Aligned_cols=128  Identities=20%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH  129 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~  129 (343)
                      ..|++++|.....+.+.+.+....          ....+|||+|++|||||++|++|....   +.+|+.++|..+....
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~  442 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL  442 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence            567889998888877766664321          344689999999999999999997754   5699999998764221


Q ss_pred             -----ccch-------HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCC
Q psy7809         130 -----YGES-------EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDK  191 (343)
Q Consensus       130 -----~~~~-------~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~  191 (343)
                           +|..       .......|..+   ..++||||||+.+         ...+...|+..++.-.     ... ...
T Consensus       443 ~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~  510 (686)
T PRK15429        443 LESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM---------PLELQPKLLRVLQEQEFERLGSNKIIQT  510 (686)
T ss_pred             hhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC---------CHHHHHHHHHHHHhCCEEeCCCCCcccc
Confidence                 1110       00011123222   3479999999988         3345556666654311     110 123


Q ss_pred             CEEEEEecCCC
Q psy7809         192 GVLVLAATNHP  202 (343)
Q Consensus       192 ~v~vI~ttn~~  202 (343)
                      ++.+|++|+..
T Consensus       511 ~~RiI~~t~~~  521 (686)
T PRK15429        511 DVRLIAATNRD  521 (686)
T ss_pred             eEEEEEeCCCC
Confidence            57788888764

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=98.83  E-value=6.6e-09  Score=101.86  Aligned_cols=128  Identities=25%  Similarity=0.328  Sum_probs=82.5

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH-----------hCCceEEEc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ-----------HGSTFFNVL  121 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~-----------l~~~~~~v~  121 (343)
                      ..|++++|.....+.+.+.+....          ....+|||+|++||||+++|++|-..           .+.+|+.++
T Consensus       216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in  285 (538)
T PRK15424        216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN  285 (538)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence            468899999888887777664321          34568999999999999999999766           356999999


Q ss_pred             CCccccccc-----cchHH--------HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC---
Q psy7809         122 PSSLTSKHY-----GESEK--------LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG---  185 (343)
Q Consensus       122 ~~~l~~~~~-----~~~~~--------~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~---  185 (343)
                      |..+.....     |....        .-..+|..+   ..+.||||||+.|         +...+..|+..++.-.   
T Consensus       286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L---------p~~~Q~kLl~~L~e~~~~r  353 (538)
T PRK15424        286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEM---------PLPLQTRLLRVLEEKEVTR  353 (538)
T ss_pred             cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhC---------CHHHHHHHHhhhhcCeEEe
Confidence            987643211     10000        001233333   2368999999988         3456666777665321   


Q ss_pred             --CCC-CCCCEEEEEecCCC
Q psy7809         186 --TGS-GDKGVLVLAATNHP  202 (343)
Q Consensus       186 --~~~-~~~~v~vI~ttn~~  202 (343)
                        ... -...+.+|++|+..
T Consensus       354 ~G~~~~~~~dvRiIaat~~~  373 (538)
T PRK15424        354 VGGHQPVPVDVRVISATHCD  373 (538)
T ss_pred             cCCCceeccceEEEEecCCC
Confidence              111 12246788888753

>PRK06921 hypothetical protein; Provisional

Probab=98.82  E-value=1.3e-08  Score=91.75  Aligned_cols=69  Identities=26%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA  159 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~  159 (343)
                      ...+++|+||+|+|||+|+.++|+++    +..++++...++........ ......+..  .....+|+|||++.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~  188 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK  188 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence            35689999999999999999999876    45667776555433211110 111112222  23457999999954

>PRK08181 transposase; Validated

Probab=98.82  E-value=7.4e-09  Score=93.06  Aligned_cols=73  Identities=23%  Similarity=0.329  Sum_probs=49.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch-HHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES-EKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                      ...+++|+||+|||||+|+.+++.++   |..+++++..++........ .......+...  ..+.+|+|||++.+..
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~  181 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK  181 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence            45689999999999999999998755   66778887766665321110 01122233322  3457999999987743

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=98.82  E-value=3.1e-08  Score=100.39  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=80.6

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK  128 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~  128 (343)
                      ...|++++|.....+.+.+.+....          ....+|||+|++||||+++|+++-...   +.+|+.++|..+...
T Consensus       321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~  390 (638)
T PRK11388        321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE  390 (638)
T ss_pred             cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence            4579999998877777666554321          344579999999999999999998765   468999999876421


Q ss_pred             cccchHHHHHHHHHH------------HHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CC
Q psy7809         129 HYGESEKLVRALFET------------ARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GD  190 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~  190 (343)
                      .      ....+|..            ......+.||||||+.|         ...++..|+..++.-.     ... ..
T Consensus       391 ~------~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~  455 (638)
T PRK11388        391 A------LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL---------SPELQSALLQVLKTGVITRLDSRRLIP  455 (638)
T ss_pred             H------HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence            1      11112211            00112468999999988         3355566666664321     100 01


Q ss_pred             CCEEEEEecCCC
Q psy7809         191 KGVLVLAATNHP  202 (343)
Q Consensus       191 ~~v~vI~ttn~~  202 (343)
                      -.+.+|+||+..
T Consensus       456 ~~~riI~~t~~~  467 (638)
T PRK11388        456 VDVRVIATTTAD  467 (638)
T ss_pred             eeEEEEEeccCC
Confidence            146788888763

>KOG2227|consensus

Probab=98.81  E-value=1.4e-07  Score=88.48  Aligned_cols=217  Identities=19%  Similarity=0.233  Sum_probs=130.3

Q ss_pred             CCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHH
Q psy7809          31 NRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      .....++.-+.....+....++.   .++|.+.-+..+++++..++..        ..+.++++.|.||+|||.+...+.
T Consensus       128 ~~p~~ke~~~~~~~~l~~t~~p~---~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl  196 (529)
T KOG2227|consen  128 MNPSAKEISEQRSESLLNTAPPG---TLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVL  196 (529)
T ss_pred             CCcccHHHHHHHHHHHHhcCCCC---CccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHH
Confidence            33334445555555555555554   5689999999999988765432        556789999999999999998776


Q ss_pred             HHhC-----CceEEEcCCcccccc---------------ccchHHHHHHHHHHH-HHcC-CcEEEEcccccccCCCCchh
Q psy7809         111 SQHG-----STFFNVLPSSLTSKH---------------YGESEKLVRALFETA-RARA-PAVIFIDEVDAFCSGSREHE  168 (343)
Q Consensus       111 ~~l~-----~~~~~v~~~~l~~~~---------------~~~~~~~i~~~~~~a-~~~~-p~il~iDeid~l~~~~~~~~  168 (343)
                      ..+.     ...++++|..+....               ...........|..- .... +-|+++||+|.|+...+   
T Consensus       197 ~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---  273 (529)
T KOG2227|consen  197 DSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---  273 (529)
T ss_pred             HhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---
Confidence            5442     245788887654210               011111122222222 2222 55999999999974322   


Q ss_pred             hhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc-ccc-----Ccch-----HHHHHhhhhcCC---CCCC
Q psy7809         169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR-RFE-----KRIS-----PIQIIGLCLGEI---RKDP  234 (343)
Q Consensus       169 ~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~-rf~-----~~i~-----r~~il~~~~~~~---~~~~  234 (343)
                         .++.++..+-..     ...++++||.+|..+.-|..|-+ ..+     ..+.     +.+|.+++-.+.   ....
T Consensus       274 ---~vLy~lFewp~l-----p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~  345 (529)
T KOG2227|consen  274 ---TVLYTLFEWPKL-----PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI  345 (529)
T ss_pred             ---ceeeeehhcccC-----CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc
Confidence               233333333221     24589999999988766654444 111     1111     555555555443   2222


Q ss_pred             --cccHHHHHHHccCCCHHHHH---HHHHHHHHHHHHHHHH
Q psy7809         235 --NVDVATLSKQLIGYSGSDIR---DLCQEIILIAAREVIQ  270 (343)
Q Consensus       235 --~~~~~~la~~t~g~s~~di~---~l~~~A~~~a~~r~~~  270 (343)
                        ...+...|+...|- .||++   .+|++|+.++..+...
T Consensus       346 ~~~~Aie~~ArKvaa~-SGDlRkaLdv~R~aiEI~E~e~r~  385 (529)
T KOG2227|consen  346 FLNAAIELCARKVAAP-SGDLRKALDVCRRAIEIAEIEKRK  385 (529)
T ss_pred             cchHHHHHHHHHhccC-chhHHHHHHHHHHHHHHHHHHHhh
Confidence              23466788888885 46776   5788899888876544

>KOG2035|consensus

Probab=98.81  E-value=1.1e-07  Score=83.40  Aligned_cols=171  Identities=16%  Similarity=0.262  Sum_probs=111.9

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---c------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---T------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~------  116 (343)
                      ++.++.+.+++.+.+.++....+..+...            ....++++|||+|+||.|.+-++.+++..   +      
T Consensus         3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~   70 (351)
T KOG2035|consen    3 WVDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET   70 (351)
T ss_pred             chhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence            45677888899999999998888876641            23468999999999999999999988732   1      


Q ss_pred             --------------------eEEEcCCccccccccch-HHHHHHHHHHHHHcCC---------cEEEEcccccccCCCCc
Q psy7809         117 --------------------FFNVLPSSLTSKHYGES-EKLVRALFETARARAP---------AVIFIDEVDAFCSGSRE  166 (343)
Q Consensus       117 --------------------~~~v~~~~l~~~~~~~~-~~~i~~~~~~a~~~~p---------~il~iDeid~l~~~~~~  166 (343)
                                          .+++++++     .|.. ...+.++++.....+|         .+++|-|+|.|      
T Consensus        71 ~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L------  139 (351)
T KOG2035|consen   71 RTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL------  139 (351)
T ss_pred             EEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh------
Confidence                                11112222     1211 2345555555544332         49999999988      


Q ss_pred             hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhcc-ccCcch------HHHHHhhhhcCCCCC-CcccH
Q psy7809         167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR-FEKRIS------PIQIIGLCLGEIRKD-PNVDV  238 (343)
Q Consensus       167 ~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~r-f~~~i~------r~~il~~~~~~~~~~-~~~~~  238 (343)
                         ....+.+|...|+.+..     ++.+|..+|..+.+-+++++| |-.++.      -..++...+++..+. +..-+
T Consensus       140 ---T~dAQ~aLRRTMEkYs~-----~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l  211 (351)
T KOG2035|consen  140 ---TRDAQHALRRTMEKYSS-----NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELL  211 (351)
T ss_pred             ---hHHHHHHHHHHHHHHhc-----CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHH
Confidence               45667788888887754     567888899999999999995 334443      223344444443222 23334


Q ss_pred             HHHHHHccC
Q psy7809         239 ATLSKQLIG  247 (343)
Q Consensus       239 ~~la~~t~g  247 (343)
                      ..+|+.+.|
T Consensus       212 ~rIa~kS~~  220 (351)
T KOG2035|consen  212 KRIAEKSNR  220 (351)
T ss_pred             HHHHHHhcc
Confidence            566666655

>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting

Probab=98.80  E-value=2e-09  Score=73.93  Aligned_cols=45  Identities=27%  Similarity=0.502  Sum_probs=36.9

Q ss_pred             CCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809         290 AKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG  341 (343)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~  341 (343)
                      ..+....+..++       |+.+||..|++.++|||+.+++++|++|.++||
T Consensus        18 ~di~~~~l~~p~-------it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG   62 (62)
T PF09336_consen   18 MDIPAEKLKEPP-------ITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG   62 (62)
T ss_dssp             TGS-GGGB-HHH-------BCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred             hhcCcccccCCC-------CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence            444455555555       999999999999999999999999999999999

It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....

>PRK06526 transposase; Provisional

Probab=98.80  E-value=4.4e-09  Score=93.95  Aligned_cols=73  Identities=21%  Similarity=0.307  Sum_probs=46.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc-hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE-SEKLVRALFETARARAPAVIFIDEVDAFC  161 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~-~~~~i~~~~~~a~~~~p~il~iDeid~l~  161 (343)
                      ....+++|+||||||||+|+.+++.++   |..+.++++.++....... ....+...+..  ...+.+|+|||++.+.
T Consensus        96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~  172 (254)
T PRK06526         96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP  172 (254)
T ss_pred             hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence            455789999999999999999998775   5556565555544322100 00011222222  2346799999998774

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=98.80  E-value=2.2e-07  Score=91.67  Aligned_cols=127  Identities=21%  Similarity=0.292  Sum_probs=81.4

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc-
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH-  129 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~-  129 (343)
                      .+.+++|.....+.+.+.+....          ....+|||+|++||||+++|+++....   +.+|+.++|..+.... 
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~  254 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA  254 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence            57789998888877777665421          455689999999999999999998765   4689999998764321 


Q ss_pred             ----ccchHHH-------HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCC
Q psy7809         130 ----YGESEKL-------VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKG  192 (343)
Q Consensus       130 ----~~~~~~~-------i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~  192 (343)
                          +|.....       ....|..+   ..+.|||||||.|.         ...+..|+..++.-.     ... ....
T Consensus       255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~  322 (509)
T PRK05022        255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP---------LALQAKLLRVLQYGEIQRVGSDRSLRVD  322 (509)
T ss_pred             HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC---------HHHHHHHHHHHhcCCEeeCCCCcceecc
Confidence                1100000       00123222   24689999999883         345556666654311     110 1225


Q ss_pred             EEEEEecCCC
Q psy7809         193 VLVLAATNHP  202 (343)
Q Consensus       193 v~vI~ttn~~  202 (343)
                      +.+|++|+..
T Consensus       323 ~RiI~~t~~~  332 (509)
T PRK05022        323 VRVIAATNRD  332 (509)
T ss_pred             eEEEEecCCC
Confidence            6788888764

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.79  E-value=7e-08  Score=93.75  Aligned_cols=47  Identities=34%  Similarity=0.499  Sum_probs=37.5

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..|.++.|+..+++.+.-.+              ....+++|.||+|+|||++++.++..+
T Consensus       188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gll  234 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLL  234 (506)
T ss_pred             cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence            37888999988887765222              355789999999999999999998765

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=98.77  E-value=6.2e-08  Score=95.60  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=80.9

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL  125 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l  125 (343)
                      .....+|++++|.....+.+.+.+....          .....|||+|++||||+++|+++-...   ..+|+.++|..+
T Consensus       197 ~~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~  266 (520)
T PRK10820        197 VNDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI  266 (520)
T ss_pred             ccccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence            3456789999998876666665553211          234579999999999999999985543   468999999876


Q ss_pred             cccc-----ccchH-------HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC
Q psy7809         126 TSKH-----YGESE-------KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS  188 (343)
Q Consensus       126 ~~~~-----~~~~~-------~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~  188 (343)
                      ....     +|...       ..-..+|..+   ..+.|||||||.|.         ..++..|+..++.-.     ...
T Consensus       267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~  334 (520)
T PRK10820        267 PDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS---------PRMQAKLLRFLNDGTFRRVGEDH  334 (520)
T ss_pred             CHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC---------HHHHHHHHHHHhcCCcccCCCCc
Confidence            4321     11000       0001123322   23689999999883         345556666664311     100


Q ss_pred             -CCCCEEEEEecCCC
Q psy7809         189 -GDKGVLVLAATNHP  202 (343)
Q Consensus       189 -~~~~v~vI~ttn~~  202 (343)
                       ....+.||++|+.+
T Consensus       335 ~~~~~vRiI~st~~~  349 (520)
T PRK10820        335 EVHVDVRVICATQKN  349 (520)
T ss_pred             ceeeeeEEEEecCCC
Confidence             01246788877654

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.75  E-value=2.5e-08  Score=89.20  Aligned_cols=71  Identities=27%  Similarity=0.432  Sum_probs=48.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHH--HHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEK--LVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~--~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      ...+++|+||||+|||+||-|+++++   |.++..+..++++.........  .-..+....  ....||+|||+...
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~  179 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE  179 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence            56799999999999999999999887   6788888888877542221110  011111111  23479999999765

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.74  E-value=1.4e-07  Score=92.20  Aligned_cols=70  Identities=24%  Similarity=0.171  Sum_probs=53.4

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+++++.+.+.+||+-...-.+.++.++......       ..+.+-+||+||+|||||++++.+|++++..+.+-
T Consensus         7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew   76 (519)
T PF03215_consen    7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW   76 (519)
T ss_pred             CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence            46788999999999998776666777666532111       12344688999999999999999999999877653

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=98.74  E-value=1.1e-07  Score=85.75  Aligned_cols=113  Identities=16%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc----------------eEEEcCCccccccccchHHHHHHHHHHHHH----
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST----------------FFNVLPSSLTSKHYGESEKLVRALFETARA----  146 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----  146 (343)
                      +-+..+||+||+|+||+.+|.++|..+-+.                ++.+.+..- +.  .-..+.++.+...+..    
T Consensus        17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~--~I~idqiR~l~~~~~~~p~e   93 (290)
T PRK05917         17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GR--LHSIETPRAIKKQIWIHPYE   93 (290)
T ss_pred             CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CC--cCcHHHHHHHHHHHhhCccC
Confidence            456789999999999999999999887442                222211100 00  0112334444444332    


Q ss_pred             cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCc
Q psy7809         147 RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKR  216 (343)
Q Consensus       147 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~  216 (343)
                      ....|++||++|.+         .....+.|++.++..     +.++++|..|+.++.+.|.++||+...
T Consensus        94 ~~~kv~ii~~ad~m---------t~~AaNaLLK~LEEP-----p~~~~fiL~~~~~~~ll~TI~SRcq~~  149 (290)
T PRK05917         94 SPYKIYIIHEADRM---------TLDAISAFLKVLEDP-----PQHGVIILTSAKPQRLPPTIRSRSLSI  149 (290)
T ss_pred             CCceEEEEechhhc---------CHHHHHHHHHHhhcC-----CCCeEEEEEeCChhhCcHHHHhcceEE
Confidence            23359999999998         446788999999864     558899999999999999999976553

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.74  E-value=6.4e-08  Score=89.60  Aligned_cols=117  Identities=21%  Similarity=0.259  Sum_probs=77.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC-------------------------ceEEEcCCcc---cccc-ccchHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS-------------------------TFFNVLPSSL---TSKH-YGESEKLV  137 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~-------------------------~~~~v~~~~l---~~~~-~~~~~~~i  137 (343)
                      +.+..+||+||+|+|||++|+.+|+.+.+                         .++++.+..-   .++. ..-..+.+
T Consensus        19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i   98 (325)
T PRK08699         19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV   98 (325)
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence            45678999999999999999999988743                         2333433110   0000 00123446


Q ss_pred             HHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccc
Q psy7809         138 RALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRF  213 (343)
Q Consensus       138 ~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf  213 (343)
                      +.+.+.+..    ....|++||+++.+         .....+.+++.++...     .++.+|.+|.+++.+.+.+.+|+
T Consensus        99 R~l~~~~~~~p~~~~~kV~iiEp~~~L---------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~SRc  164 (325)
T PRK08699         99 REIIDNVYLTSVRGGLRVILIHPAESM---------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIKSRC  164 (325)
T ss_pred             HHHHHHHhhCcccCCceEEEEechhhC---------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHHHHh
Confidence            666555543    23459999999988         3456777888887652     24667778999999999999976


Q ss_pred             cCcc
Q psy7809         214 EKRI  217 (343)
Q Consensus       214 ~~~i  217 (343)
                      ...-
T Consensus       165 ~~~~  168 (325)
T PRK08699        165 RKMV  168 (325)
T ss_pred             hhhc
Confidence            5433

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=98.73  E-value=1.9e-08  Score=98.66  Aligned_cols=128  Identities=23%  Similarity=0.319  Sum_probs=81.9

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH  129 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~  129 (343)
                      ..|++++|.....+.+.+.+....          ....+|||+|++||||+++|++|-...   +.+|+.++|..+....
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l  278 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL  278 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence            568899999888887777664321          345689999999999999999997654   5699999998764321


Q ss_pred             -----ccchH--------HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CC
Q psy7809         130 -----YGESE--------KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GD  190 (343)
Q Consensus       130 -----~~~~~--------~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~  190 (343)
                           +|...        ..-..+|..+.   .+.||||||+.|         +..++..|+..++.-.     ... ..
T Consensus       279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L---------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~  346 (526)
T TIGR02329       279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM---------PLPLQTRLLRVLEEREVVRVGGTEPVP  346 (526)
T ss_pred             HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC---------CHHHHHHHHHHHhcCcEEecCCCceee
Confidence                 11000        00112333332   368999999988         3455666666665321     111 01


Q ss_pred             CCEEEEEecCCC
Q psy7809         191 KGVLVLAATNHP  202 (343)
Q Consensus       191 ~~v~vI~ttn~~  202 (343)
                      ..+.+|++|+..
T Consensus       347 ~dvRiIaat~~~  358 (526)
T TIGR02329       347 VDVRVVAATHCA  358 (526)
T ss_pred             ecceEEeccCCC
Confidence            245678887754

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.72  E-value=6.6e-09  Score=87.95  Aligned_cols=72  Identities=25%  Similarity=0.428  Sum_probs=46.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch-HHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES-EKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      ....+++|+||+|+|||+||.++++++   +..+.+++..++........ .......+....  ...+|+|||+...
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~  120 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE  120 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence            456799999999999999999998765   77888888777764321110 011223333332  3479999999644

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK09183 transposase/IS protein; Provisional

Probab=98.72  E-value=1.8e-08  Score=90.44  Aligned_cols=74  Identities=24%  Similarity=0.332  Sum_probs=48.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc-hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE-SEKLVRALFETARARAPAVIFIDEVDAFC  161 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~-~~~~i~~~~~~a~~~~p~il~iDeid~l~  161 (343)
                      ....+++|+||+|||||+|+.+++..+   |..+.++++.++....... ....+...+... ...+.+++|||++.+.
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~  177 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP  177 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence            455689999999999999999997664   6677777766655322110 001133334332 2456799999998763

>KOG1051|consensus

Probab=98.71  E-value=1.1e-07  Score=96.61  Aligned_cols=130  Identities=24%  Similarity=0.299  Sum_probs=92.4

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccC--CCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCccc----
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGIL--RPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLT----  126 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~--~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~----  126 (343)
                      +.|+||+++...+.+.+.....      ++.  .+...++|.||.|+|||-||+++|..+-   -.++.++++++.    
T Consensus       562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk  635 (898)
T KOG1051|consen  562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK  635 (898)
T ss_pred             hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence            4589999999999998875421      111  3667899999999999999999998873   468889888532    


Q ss_pred             --c---ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEEE
Q psy7809         127 --S---KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVLV  195 (343)
Q Consensus       127 --~---~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~v  195 (343)
                        +   .|+|...  ...+....+....+||+|||||.-         +..+++.|++.++.-.-..      .-++++|
T Consensus       636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA---------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~  704 (898)
T KOG1051|consen  636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA---------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF  704 (898)
T ss_pred             ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc---------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence              2   2344332  345666666667789999999755         5578888888887422111      1347899


Q ss_pred             EEecCCC
Q psy7809         196 LAATNHP  202 (343)
Q Consensus       196 I~ttn~~  202 (343)
                      |.|+|.-
T Consensus       705 IMTsn~~  711 (898)
T KOG1051|consen  705 IMTSNVG  711 (898)
T ss_pred             EEecccc
Confidence            9998863

>PF13173 AAA_14: AAA domain

Probab=98.69  E-value=6.9e-08  Score=77.23  Aligned_cols=69  Identities=25%  Similarity=0.358  Sum_probs=47.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      ..++|+||+|||||++++.++..+.  .+++++++.+..........  +...+.......+.+|||||++.+
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~   73 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL   73 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence            4689999999999999999998887  78888887765542211111  223332222225689999999877

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.68  E-value=9.8e-08  Score=76.30  Aligned_cols=86  Identities=28%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh--------CCceEEEcCCccccc--------------cc--cchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH--------GSTFFNVLPSSLTSK--------------HY--GESEKLVRALFETA  144 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l--------~~~~~~v~~~~l~~~--------------~~--~~~~~~i~~~~~~a  144 (343)
                      ...++++||+|+|||++++.++..+        ..+++.+++......              ..  .........+.+..
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l   83 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL   83 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence            4578999999999999999999887        667777766443310              01  12233444455555


Q ss_pred             HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       145 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                      ......+|+|||+|.+.        ....++.|...++
T Consensus        84 ~~~~~~~lviDe~~~l~--------~~~~l~~l~~l~~  113 (131)
T PF13401_consen   84 DRRRVVLLVIDEADHLF--------SDEFLEFLRSLLN  113 (131)
T ss_dssp             HHCTEEEEEEETTHHHH--------THHHHHHHHHHTC
T ss_pred             HhcCCeEEEEeChHhcC--------CHHHHHHHHHHHh
Confidence            55554599999999874        2445555555544

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.68  E-value=8.7e-08  Score=84.15  Aligned_cols=177  Identities=19%  Similarity=0.238  Sum_probs=88.1

Q ss_pred             ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEcC-Ccccc------
Q psy7809          58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVLP-SSLTS------  127 (343)
Q Consensus        58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~~-~~l~~------  127 (343)
                      ++|.+...+.|.+.+..            .+...++|+||+|+|||+|++.+...+..   ..+++.. .....      
T Consensus         1 F~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~   68 (234)
T PF01637_consen    1 FFGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF   68 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence            35777777777766542            23568999999999999999999998732   1112211 00000      


Q ss_pred             ----------------------------ccccchHHHHHHHHHHHHHcC-CcEEEEccccccc-CCCCchhhhHHHHHHH
Q psy7809         128 ----------------------------KHYGESEKLVRALFETARARA-PAVIFIDEVDAFC-SGSREHEATRRVRCEL  177 (343)
Q Consensus       128 ----------------------------~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~-~~~~~~~~~~~~~~~l  177 (343)
                                                  .........+..++....... ..||+|||++.+. ...    ........|
T Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----~~~~~~~~l  144 (234)
T PF01637_consen   69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----EDKDFLKSL  144 (234)
T ss_dssp             HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----chHHHHHHH
Confidence                                        000112334556666655443 3799999999997 211    123444455


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCC------CHHHhccccCcch--------HHHHHhhhhcCCC-C-CCcccHHHH
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDL------DEALKRRFEKRIS--------PIQIIGLCLGEIR-K-DPNVDVATL  241 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l------~~~l~~rf~~~i~--------r~~il~~~~~~~~-~-~~~~~~~~l  241 (343)
                      ...++....   ..++.+|.++......      ...+..|+.. +.        -.++++..+.... + .++.+++.+
T Consensus       145 ~~~~~~~~~---~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i  220 (234)
T PF01637_consen  145 RSLLDSLLS---QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEI  220 (234)
T ss_dssp             HHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHH
T ss_pred             HHHHhhccc---cCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence            555554222   1244444444332111      1122223333 22        3344444443331 1 367788899


Q ss_pred             HHHccCCCHHHHHH
Q psy7809         242 SKQLIGYSGSDIRD  255 (343)
Q Consensus       242 a~~t~g~s~~di~~  255 (343)
                      ...+.|. |+-|..
T Consensus       221 ~~~~gG~-P~~l~~  233 (234)
T PF01637_consen  221 YSLTGGN-PRYLQE  233 (234)
T ss_dssp             HHHHTT--HHHHHH
T ss_pred             HHHhCCC-HHHHhc
Confidence            9999884 666643

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.67  E-value=5.5e-08  Score=78.89  Aligned_cols=88  Identities=26%  Similarity=0.456  Sum_probs=55.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG  163 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~  163 (343)
                      .....|+|+|++||||+++|+++....+.   +|+.++|..+.           .+++..+   ....|||+|+|.|.  
T Consensus        19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~--   82 (138)
T PF14532_consen   19 KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS--   82 (138)
T ss_dssp             CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS---
T ss_pred             CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC--
Confidence            34567999999999999999999887653   45555555432           2344443   55799999999993  


Q ss_pred             CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       164 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                             ...+..|+..+....    ..++.+|+++..
T Consensus        83 -------~~~Q~~L~~~l~~~~----~~~~RlI~ss~~  109 (138)
T PF14532_consen   83 -------PEAQRRLLDLLKRQE----RSNVRLIASSSQ  109 (138)
T ss_dssp             -------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred             -------HHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence                   344455555554422    124455655553

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.66  E-value=6.4e-08  Score=88.83  Aligned_cols=71  Identities=20%  Similarity=0.332  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchH-HHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESE-KLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~-~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      ...|++|+||+|+|||+|+.++|+++   |..+..+..+++......... ..+...+...  ....||+|||+..-
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e  229 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE  229 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence            45799999999999999999999988   677777777665543211100 0122333322  24579999999654

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.65  E-value=6.1e-07  Score=79.45  Aligned_cols=116  Identities=9%  Similarity=0.033  Sum_probs=77.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCce--------------EEEcCCccccccc---cchHHHHHHHHHHHH----
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTF--------------FNVLPSSLTSKHY---GESEKLVRALFETAR----  145 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~--------------~~v~~~~l~~~~~---~~~~~~i~~~~~~a~----  145 (343)
                      .++..+||+||.|+||..+|.++|..+-+.-              ..-..+++.--+.   .-....++.+.....    
T Consensus         5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~   84 (261)
T PRK05818          5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV   84 (261)
T ss_pred             CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence            5678899999999999999999998763210              0001111111000   011223333333321    


Q ss_pred             H-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCc
Q psy7809         146 A-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKR  216 (343)
Q Consensus       146 ~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~  216 (343)
                      . ....|++|+++|.+         .....+.|++.++.-     +.++++|.+|+.++.+.+.++||+...
T Consensus        85 e~~~~KV~II~~ae~m---------~~~AaNaLLK~LEEP-----p~~t~fiLit~~~~~lLpTI~SRCq~~  142 (261)
T PRK05818         85 ESNGKKIYIIYGIEKL---------NKQSANSLLKLIEEP-----PKNTYGIFTTRNENNILNTILSRCVQY  142 (261)
T ss_pred             hcCCCEEEEeccHhhh---------CHHHHHHHHHhhcCC-----CCCeEEEEEECChHhCchHhhhheeee
Confidence            2 23579999999988         446788999999853     568899999999999999999986553

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=98.64  E-value=1.2e-06  Score=79.30  Aligned_cols=167  Identities=19%  Similarity=0.109  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE----------------EEcCCc
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF----------------NVLPSS  124 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~----------------~v~~~~  124 (343)
                      ++.+++.+...+...           +.+..+||+||  +||+++|+.+|..+-+.-.                .-+.++
T Consensus         7 q~~~~~~L~~~~~~~-----------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD   73 (290)
T PRK07276          7 QPKVFQRFQTILEQD-----------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD   73 (290)
T ss_pred             HHHHHHHHHHHHHcC-----------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            455666666655432           45678999996  6899999999987643210                001112


Q ss_pred             cccccc-c--chHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809         125 LTSKHY-G--ESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLA  197 (343)
Q Consensus       125 l~~~~~-~--~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~  197 (343)
                      +.--.. +  -....++.+...+..    ....|++||++|.+         .....|.|++.++.-     +.++++|.
T Consensus        74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m---------~~~AaNaLLKtLEEP-----p~~t~~iL  139 (290)
T PRK07276         74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM---------HVNAANSLLKVIEEP-----QSEIYIFL  139 (290)
T ss_pred             eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc---------CHHHHHHHHHHhcCC-----CCCeEEEE
Confidence            111000 1  112345555444432    23469999999998         346788999999854     45789999


Q ss_pred             ecCCCCCCCHHHhccccCcch---HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809         198 ATNHPWDLDEALKRRFEKRIS---PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQ  258 (343)
Q Consensus       198 ttn~~~~l~~~l~~rf~~~i~---r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~  258 (343)
                      +|++++.+-|.++||+...-.   ...+.... ...... ......++ ...| +++....+..
T Consensus       140 ~t~~~~~lLpTI~SRcq~i~f~~~~~~~~~~L-~~~g~~-~~~a~~la-~~~~-s~~~A~~l~~  199 (290)
T PRK07276        140 LTNDENKVLPTIKSRTQIFHFPKNEAYLIQLL-EQKGLL-KTQAELLA-KLAQ-STSEAEKLAQ  199 (290)
T ss_pred             EECChhhCchHHHHcceeeeCCCcHHHHHHHH-HHcCCC-hHHHHHHH-HHCC-CHHHHHHHhC
Confidence            999999999999997654333   33333333 222221 12223344 3445 5666666553

>KOG0478|consensus

Probab=98.63  E-value=2.6e-07  Score=90.02  Aligned_cols=151  Identities=25%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC-Cccccc--cccch
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP-SSLTSK--HYGES  133 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~-~~l~~~--~~~~~  133 (343)
                      .|.|++++|+.|.-.+..-........+..+..-+|||+|.||||||.+.+.+.+.+..-.+.--- +.-.+.  ++-.-
T Consensus       430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd  509 (804)
T KOG0478|consen  430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD  509 (804)
T ss_pred             hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence            678999999988755533211111111123445689999999999999999999876543332100 000000  00000


Q ss_pred             HHHHHHHHHH--H-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc---------CCCCCCCCCEEEEEecCC
Q psy7809         134 EKLVRALFET--A-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG---------VGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       134 ~~~i~~~~~~--a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~v~vI~ttn~  201 (343)
                      .. .+.+.-.  | --...+|-+|||||+|-      ...+.   .|.+.|+.         +-..- +.+.-||+++|.
T Consensus       510 ~d-tkqlVLesGALVLSD~GiCCIDEFDKM~------dStrS---vLhEvMEQQTvSIAKAGII~sL-NAR~SVLAaANP  578 (804)
T KOG0478|consen  510 PD-TRQLVLESGALVLSDNGICCIDEFDKMS------DSTRS---VLHEVMEQQTLSIAKAGIIASL-NARCSVLAAANP  578 (804)
T ss_pred             Cc-cceeeeecCcEEEcCCceEEchhhhhhh------HHHHH---HHHHHHHHhhhhHhhcceeeec-cccceeeeeecc
Confidence            00 0000000  0 00123689999999992      22223   33333332         11111 235678999985


Q ss_pred             CC-------------CCCHHHhccccCcch
Q psy7809         202 PW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       202 ~~-------------~l~~~l~~rf~~~i~  218 (343)
                      ..             .|++.|+|||+..+-
T Consensus       579 ~~skynp~k~i~eNI~LpptLLSRFDLIyl  608 (804)
T KOG0478|consen  579 IRSKYNPNKSIIENINLPPTLLSRFDLIFL  608 (804)
T ss_pred             ccccCCCCCchhhccCCChhhhhhhcEEEE
Confidence            42             378999999987664

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=98.62  E-value=1e-07  Score=89.27  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=82.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC-ceEEEcCCccccccccch------HHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS-TFFNVLPSSLTSKHYGES------EKLVRALFETARARAPAVIFIDEVDA  159 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~v~~~~l~~~~~~~~------~~~i~~~~~~a~~~~p~il~iDeid~  159 (343)
                      .+++|++||||+|+|||+|.-.+...+.. .-..+...+++.......      ...+..+-+.... ...||+|||++.
T Consensus        60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~V  138 (362)
T PF03969_consen   60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQV  138 (362)
T ss_pred             CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeeec
Confidence            57899999999999999999999887753 212222212221110000      0112222222222 224999999964


Q ss_pred             ccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC-CCCCH-HHhc-cccCcchHHHHHhhhhcCCCCCCcc
Q psy7809         160 FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP-WDLDE-ALKR-RFEKRISPIQIIGLCLGEIRKDPNV  236 (343)
Q Consensus       160 l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~-~~l~~-~l~~-rf~~~i~r~~il~~~~~~~~~~~~~  236 (343)
                      -      ......++..|+..+-       ..++++|+|+|.+ ++|-+ .+.+ +|.-   -..+|+..+.-+.+.+..
T Consensus       139 ~------DiaDAmil~rLf~~l~-------~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp---~I~~l~~~~~vv~ld~~~  202 (362)
T PF03969_consen  139 T------DIADAMILKRLFEALF-------KRGVVLVATSNRPPEDLYKNGLQRERFLP---FIDLLKRRCDVVELDGGV  202 (362)
T ss_pred             c------chhHHHHHHHHHHHHH-------HCCCEEEecCCCChHHHcCCcccHHHHHH---HHHHHHhceEEEEecCCC
Confidence            4      3345567777777664       2378999999974 43322 2222 3333   445777777777777888


Q ss_pred             cHHHHHH
Q psy7809         237 DVATLSK  243 (343)
Q Consensus       237 ~~~~la~  243 (343)
                      |+.....
T Consensus       203 DyR~~~~  209 (362)
T PF03969_consen  203 DYRRRGA  209 (362)
T ss_pred             chhhhcc
Confidence            8876543

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>KOG1970|consensus

Probab=98.58  E-value=1.8e-06  Score=82.53  Aligned_cols=71  Identities=21%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +++++.+.+.++|.-...-+..++.++...    ..+. ...+.+-+||+||+||||||.++.+|+++|..+++-.
T Consensus        72 W~eKy~P~t~eeLAVHkkKI~eVk~WL~~~----~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~  142 (634)
T KOG1970|consen   72 WVEKYKPRTLEELAVHKKKISEVKQWLKQV----AEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS  142 (634)
T ss_pred             hHHhcCcccHHHHhhhHHhHHHHHHHHHHH----HHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence            566777788888754333333333333200    0000 0134456889999999999999999999998877643

>KOG0482|consensus

Probab=98.56  E-value=2.1e-07  Score=87.83  Aligned_cols=177  Identities=21%  Similarity=0.251  Sum_probs=95.9

Q ss_pred             CCCCChhHHHHhhccccccCCCCCC-CcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHH
Q psy7809          31 NRRANPELTALVEKDIVQTDTGVGW-DDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKA  108 (343)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~  108 (343)
                      ....+++..+++..+-+-..-..++ .+|.|.+++|+.|.-.+..--... ...+. ++...+|+|.|.||+.||-|.+.
T Consensus       316 ~~~~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~-~~dGMKIRGdINicLmGDPGVAKSQLLky  394 (721)
T KOG0482|consen  316 TGELEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKS-PGDGMKIRGDINICLMGDPGVAKSQLLKY  394 (721)
T ss_pred             cccccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCC-CCCCceeecceeEEecCCCchhHHHHHHH
Confidence            3444555555555443222222223 479999999999987776432211 11111 45556899999999999999999


Q ss_pred             HHHHhCCceEEEcCCccccccccchHHHHHHHHH-------HHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhh
Q psy7809         109 VASQHGSTFFNVLPSSLTSKHYGESEKLVRALFE-------TARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSH  180 (343)
Q Consensus       109 ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~-------~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~  180 (343)
                      +.+-.-..++..-..   +..+|-+....+.-..       -|.- ...+|.+|||+|++....      +....+.+++
T Consensus       395 i~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D------RtAIHEVMEQ  465 (721)
T KOG0482|consen  395 ISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD------RTAIHEVMEQ  465 (721)
T ss_pred             HHhcCcccceecCCC---CCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh------hHHHHHHHHh
Confidence            987665444432111   1112222111111000       0000 012589999999995422      1122222111


Q ss_pred             ----c--ccCCCCCCCCCEEEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809         181 ----M--DGVGTGSGDKGVLVLAATNHPW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       181 ----l--~~~~~~~~~~~v~vI~ttn~~~-------------~l~~~l~~rf~~~i~  218 (343)
                          +  .++...- +.+.-|++++|..+             .|+++|+|||+....
T Consensus       466 QTISIaKAGI~TtL-NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~L  521 (721)
T KOG0482|consen  466 QTISIAKAGINTTL-NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWL  521 (721)
T ss_pred             hhhhhhhhccccch-hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhh
Confidence                1  1222221 33567888888653             489999999986654

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=98.51  E-value=3.3e-07  Score=91.21  Aligned_cols=150  Identities=25%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc-C---Cccccc
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL-P---SSLTSK  128 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~-~---~~l~~~  128 (343)
                      ...|.|.+.+|+++.-.+...  -......  .++.--++||.|.||+|||.|.+.+++.+-..++.-- .   ..|...
T Consensus       285 aPsIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa  362 (682)
T COG1241         285 APSIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA  362 (682)
T ss_pred             cccccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence            457889999999987555322  1111111  1344468999999999999999999987755444321 1   111110


Q ss_pred             cccchHHHHHHHHHHH---HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC---------CCCCCCCEEEE
Q psy7809         129 HYGESEKLVRALFETA---RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG---------TGSGDKGVLVL  196 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~v~vI  196 (343)
                      ......  ..++.-.+   .-..++|.+|||+|.+-.         .....+.+.|++..         ..- +.+.-|+
T Consensus       363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~---------~dr~aihEaMEQQtIsIaKAGI~atL-nARcsvL  430 (682)
T COG1241         363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNE---------EDRVAIHEAMEQQTISIAKAGITATL-NARCSVL  430 (682)
T ss_pred             EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCCh---------HHHHHHHHHHHhcEeeecccceeeec-chhhhhh
Confidence            000000  00000000   001247999999998832         23334455554311         111 2356688


Q ss_pred             EecCCCC-------------CCCHHHhccccCcch
Q psy7809         197 AATNHPW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       197 ~ttn~~~-------------~l~~~l~~rf~~~i~  218 (343)
                      |++|...             .|++++++||+-.+.
T Consensus       431 AAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv  465 (682)
T COG1241         431 AAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV  465 (682)
T ss_pred             hhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence            8888764             378999999987765

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.50  E-value=2.9e-07  Score=85.23  Aligned_cols=62  Identities=19%  Similarity=0.322  Sum_probs=49.0

Q ss_pred             CC-cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-------ceEEEcC
Q psy7809          55 WD-DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-------TFFNVLP  122 (343)
Q Consensus        55 ~~-~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-------~~~~v~~  122 (343)
                      |+ ++.|+++.++++.+++....      .+.......++|.||||+|||++|+++++.++.       +++.+..
T Consensus        49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~  118 (361)
T smart00763       49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW  118 (361)
T ss_pred             cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence            45 89999999999998876432      111233467899999999999999999999976       7888766

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.47  E-value=6.5e-07  Score=82.37  Aligned_cols=82  Identities=30%  Similarity=0.398  Sum_probs=57.1

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccccccc
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGE  132 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~~~~~  132 (343)
                      .+.++||.+++++.--.+.+.       ..+.-.++++||.||||||||.||-++|+++|  .||..++.+++.+..+..
T Consensus        23 ~~GlVGQ~~AReAagiiv~mI-------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK   95 (398)
T PF06068_consen   23 ADGLVGQEKAREAAGIIVDMI-------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK   95 (398)
T ss_dssp             ETTEES-HHHHHHHHHHHHHH-------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred             cccccChHHHHHHHHHHHHHH-------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence            457999999999876655432       22224668999999999999999999999997  799999999998776655


Q ss_pred             hHHHHHHHHHHH
Q psy7809         133 SEKLVRALFETA  144 (343)
Q Consensus       133 ~~~~i~~~~~~a  144 (343)
                      ++ .+.+.|+.+
T Consensus        96 TE-~L~qa~Rra  106 (398)
T PF06068_consen   96 TE-ALTQAFRRA  106 (398)
T ss_dssp             HH-HHHHHHHCS
T ss_pred             hH-HHHHHHHHh
Confidence            44 344555544

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=98.46  E-value=5.7e-06  Score=75.59  Aligned_cols=139  Identities=9%  Similarity=-0.016  Sum_probs=85.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCc-------------eEEEcCCccccccccchHHHHHHHHHHHHH-----cCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGST-------------FFNVLPSSLTSKHYGESEKLVRALFETARA-----RAP  149 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~-------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~-----~~p  149 (343)
                      -++..||+|+.|.||+.+++.+++.+-+.             ++.++..   +..  .....++.+......     ...
T Consensus        17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~   91 (299)
T PRK07132         17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQK   91 (299)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCc
Confidence            44578899999999999999999887321             1222100   110  112234444333321     245


Q ss_pred             cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhh
Q psy7809         150 AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGL  225 (343)
Q Consensus       150 ~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~  225 (343)
                      .|++||++|.+         .....+.|++.++..     +..+++|.+|+.++.+-+.+++|+...-.    ..++...
T Consensus        92 KvvII~~~e~m---------~~~a~NaLLK~LEEP-----p~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~  157 (299)
T PRK07132         92 KILIIKNIEKT---------SNSLLNALLKTIEEP-----PKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK  157 (299)
T ss_pred             eEEEEeccccc---------CHHHHHHHHHHhhCC-----CCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence            69999999888         335677899999864     45678888887889999999997654333    4555544


Q ss_pred             hhcCCCCCCcccHHHHHHHccC
Q psy7809         226 CLGEIRKDPNVDVATLSKQLIG  247 (343)
Q Consensus       226 ~~~~~~~~~~~~~~~la~~t~g  247 (343)
                      .... . .++.....+|..+.|
T Consensus       158 l~~~-~-~~~~~a~~~a~~~~~  177 (299)
T PRK07132        158 LLSK-N-KEKEYNWFYAYIFSN  177 (299)
T ss_pred             HHHc-C-CChhHHHHHHHHcCC
Confidence            4432 2 222333445555544

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=98.46  E-value=1.5e-06  Score=84.36  Aligned_cols=124  Identities=19%  Similarity=0.212  Sum_probs=74.0

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY  130 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~  130 (343)
                      .+.+++|.....+.+...+...          .....+++|+|++||||+++|+++....   +.+|+.++|..+.....
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~  206 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL  206 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence            3445666655555555444211          1344679999999999999999997665   46899999987642211


Q ss_pred             cchHHHHHHHHHH---------------HHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-C
Q psy7809         131 GESEKLVRALFET---------------ARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-G  189 (343)
Q Consensus       131 ~~~~~~i~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~  189 (343)
                            -..+|..               ......+.|||||++.|.         ...+..|+..++.-.     ... .
T Consensus       207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~---------~~~q~~l~~~l~~~~~~~~~~~~~~  271 (445)
T TIGR02915       207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP---------LNLQAKLLRFLQERVIERLGGREEI  271 (445)
T ss_pred             ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC---------HHHHHHHHHHHhhCeEEeCCCCcee
Confidence                  1111110               011234699999999883         345556666654311     110 1


Q ss_pred             CCCEEEEEecCCC
Q psy7809         190 DKGVLVLAATNHP  202 (343)
Q Consensus       190 ~~~v~vI~ttn~~  202 (343)
                      ...+.+|++|+..
T Consensus       272 ~~~~rii~~~~~~  284 (445)
T TIGR02915       272 PVDVRIVCATNQD  284 (445)
T ss_pred             eeceEEEEecCCC
Confidence            2256788888754

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.45  E-value=3.6e-06  Score=83.57  Aligned_cols=135  Identities=13%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCccccccccch--HHH
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSKHYGES--EKL  136 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~l~~~~~~~~--~~~  136 (343)
                      +++++..|.-..+.|           ....||+|.|++|+|||+++++++..+..  +|..+...--....+|..  +..
T Consensus         8 ~~~~~~Al~l~av~p-----------~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~   76 (584)
T PRK13406          8 WADAALAAALLAVDP-----------AGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT   76 (584)
T ss_pred             HHHHHHHHHHhCcCc-----------cccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence            566666666544433           13368999999999999999999998754  666654332222222221  111


Q ss_pred             H--------HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-C-------CCCCCCCEEEEEecC
Q psy7809         137 V--------RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV-G-------TGSGDKGVLVLAATN  200 (343)
Q Consensus       137 i--------~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-~-------~~~~~~~v~vI~ttn  200 (343)
                      +        ..++..|   ...||||||+..+         ...++..|++.|+.- .       ....+.++++|+|-|
T Consensus        77 l~~g~~~~~pGlla~A---h~GvL~lDe~n~~---------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~  144 (584)
T PRK13406         77 LRAGRPVAQRGLLAEA---DGGVLVLAMAERL---------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE  144 (584)
T ss_pred             hhcCCcCCCCCceeec---cCCEEEecCcccC---------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC
Confidence            1        0111111   1269999999766         557888888888631 0       011245788999844


Q ss_pred             CC---CCCCHHHhccccCcch
Q psy7809         201 HP---WDLDEALKRRFEKRIS  218 (343)
Q Consensus       201 ~~---~~l~~~l~~rf~~~i~  218 (343)
                      ..   ..|++.++.||...+.
T Consensus       145 ~~~~~~~L~~~lLDRf~l~v~  165 (584)
T PRK13406        145 GAEEDERAPAALADRLAFHLD  165 (584)
T ss_pred             ChhcccCCCHHhHhheEEEEE
Confidence            32   3488999999987776

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.45  E-value=1.5e-06  Score=71.67  Aligned_cols=71  Identities=25%  Similarity=0.336  Sum_probs=46.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------------------------ccchHHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------------------------YGESEKLVRALFETA  144 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------------------------~~~~~~~i~~~~~~a  144 (343)
                      ++|+||||+|||+++..++...   +.++++++........                        ..............+
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR   81 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence            6899999999999999998876   4556666553322100                        000111122334555


Q ss_pred             HHcCCcEEEEcccccccC
Q psy7809         145 RARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       145 ~~~~p~il~iDeid~l~~  162 (343)
                      ....|.+++|||+..+..
T Consensus        82 ~~~~~~~lviDe~~~~~~   99 (165)
T cd01120          82 ERGGDDLIILDELTRLVR   99 (165)
T ss_pred             hCCCCEEEEEEcHHHHHH
Confidence            667788999999998864

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG2228|consensus

Probab=98.44  E-value=3.4e-06  Score=76.23  Aligned_cols=144  Identities=22%  Similarity=0.374  Sum_probs=86.2

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHH---HHhCCceEEEcCCcccc-----
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVA---SQHGSTFFNVLPSSLTS-----  127 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia---~~l~~~~~~v~~~~l~~-----  127 (343)
                      -.+.|..+..+.+.+++..-..        ....+++++.||.|+|||++.....   .+.+-+++.+.......     
T Consensus        24 ~~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a   95 (408)
T KOG2228|consen   24 INLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA   95 (408)
T ss_pred             cceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence            3557766666666665543211        2466889999999999999876553   35677777765433221     


Q ss_pred             ----------------ccccchHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         128 ----------------KHYGESEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       128 ----------------~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                                      +..|.....+..++...+..     .+.|+++||||.+++...     ..++..+...-+..  
T Consensus        96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r-----QtllYnlfDisqs~--  168 (408)
T KOG2228|consen   96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR-----QTLLYNLFDISQSA--  168 (408)
T ss_pred             HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh-----hHHHHHHHHHHhhc--
Confidence                            11233333344444433321     234778899999976322     12333344433211  


Q ss_pred             CCCCCCEEEEEecCCCCC---CCHHHhccccCcc
Q psy7809         187 GSGDKGVLVLAATNHPWD---LDEALKRRFEKRI  217 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~~~~---l~~~l~~rf~~~i  217 (343)
                         ..++.|||.|.+.+.   |.+.+.+||.+++
T Consensus       169 ---r~Piciig~Ttrld~lE~LEKRVKSRFshr~  199 (408)
T KOG2228|consen  169 ---RAPICIIGVTTRLDILELLEKRVKSRFSHRV  199 (408)
T ss_pred             ---CCCeEEEEeeccccHHHHHHHHHHhhcccce
Confidence               337888888887765   5578888999883

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=98.42  E-value=4.7e-06  Score=81.54  Aligned_cols=186  Identities=19%  Similarity=0.192  Sum_probs=101.3

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY  130 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~  130 (343)
                      .+.+++|.....+.+...+...          ......++|.|++||||+++|+++....   +.+|+.++|..+.... 
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~-  204 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL-  204 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence            3456777665555554444311          1345679999999999999999998775   4689999998763211 


Q ss_pred             cchHHHHHHHHHH---------------HHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-C
Q psy7809         131 GESEKLVRALFET---------------ARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-G  189 (343)
Q Consensus       131 ~~~~~~i~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~  189 (343)
                           .-..+|..               ......+.|||||+|.|.         ...+..|+..++.-.     ... .
T Consensus       205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~---------~~~q~~L~~~l~~~~~~~~~~~~~~  270 (469)
T PRK10923        205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP---------LDVQTRLLRVLADGQFYRVGGYAPV  270 (469)
T ss_pred             -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC---------HHHHHHHHHHHhcCcEEeCCCCCeE
Confidence                 11111110               011124689999999883         345556666654321     100 0


Q ss_pred             CCCEEEEEecCCC-------CCCCHHHhcccc-Ccch----------HHHHHhhhhcCC----CC----CCcccHHHHHH
Q psy7809         190 DKGVLVLAATNHP-------WDLDEALKRRFE-KRIS----------PIQIIGLCLGEI----RK----DPNVDVATLSK  243 (343)
Q Consensus       190 ~~~v~vI~ttn~~-------~~l~~~l~~rf~-~~i~----------r~~il~~~~~~~----~~----~~~~~~~~la~  243 (343)
                      ...+.+|+||+..       ..+.+.+..||. ..|.          ...+++.++...    ..    .+...+..|..
T Consensus       271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~  350 (469)
T PRK10923        271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR  350 (469)
T ss_pred             EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence            1246788887653       123455555542 2222          222333333322    11    12222333433


Q ss_pred             HccCCCHHHHHHHHHHHHHHH
Q psy7809         244 QLIGYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       244 ~t~g~s~~di~~l~~~A~~~a  264 (343)
                      ..=--+-++|++++++|+..+
T Consensus       351 ~~wpgNv~eL~~~i~~~~~~~  371 (469)
T PRK10923        351 LAWPGNVRQLENTCRWLTVMA  371 (469)
T ss_pred             CCCCChHHHHHHHHHHHHHhC
Confidence            332226788888888877654

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.40  E-value=8.1e-06  Score=71.85  Aligned_cols=66  Identities=24%  Similarity=0.216  Sum_probs=51.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      ...+-.++||+|||||..++.+|+.+|.+++.++|.+..+      ...+..+|.-+.... +.+++||++.|
T Consensus        31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl   96 (231)
T PF12774_consen   31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRL   96 (231)
T ss_dssp             TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCS
T ss_pred             cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhh
Confidence            3456678999999999999999999999999999988554      245667776665544 79999999988

>KOG2680|consensus

Probab=98.40  E-value=2.4e-05  Score=69.77  Aligned_cols=53  Identities=26%  Similarity=0.386  Sum_probs=36.0

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      +.++|+-..+++.--.+..       ...+.-.++.+|+.|+||+|||.+|-.+++.+|.
T Consensus        40 ~GmVGQ~~AR~Aagvi~km-------i~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~   92 (454)
T KOG2680|consen   40 EGMVGQVKARKAAGVILKM-------IREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGD   92 (454)
T ss_pred             ccchhhHHHHHHhHHHHHH-------HHcCcccceEEEEecCCCCCceeeeeehhhhhCC
Confidence            4567776666654332221       1112235678999999999999999999988863

>PHA00729 NTP-binding motif containing protein

Probab=98.40  E-value=1.5e-06  Score=75.50  Aligned_cols=27  Identities=33%  Similarity=0.373  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .+++|+|+||||||++|.+++.+++..
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~   44 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWK   44 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            589999999999999999999988643

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.35  E-value=1.5e-06  Score=75.54  Aligned_cols=80  Identities=18%  Similarity=0.324  Sum_probs=53.8

Q ss_pred             hccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc-----------------------cchHHH
Q psy7809          83 KGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY-----------------------GESEKL  136 (343)
Q Consensus        83 ~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~-----------------------~~~~~~  136 (343)
                      .+++....-++|+||||+|||+++..++...   +...++++..++.....                       .+....
T Consensus         6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   85 (209)
T TIGR02237         6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA   85 (209)
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence            3456777789999999999999999998654   56788887765211000                       011112


Q ss_pred             HHHHHHHHHHcCCcEEEEcccccccC
Q psy7809         137 VRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       137 i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                      +..+...+.+..+++|+||-+..+..
T Consensus        86 ~~~l~~~~~~~~~~lvVIDSis~l~~  111 (209)
T TIGR02237        86 IQKTSKFIDRDSASLVVVDSFTALYR  111 (209)
T ss_pred             HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence            44444445555789999999998864

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.32  E-value=1.1e-05  Score=78.61  Aligned_cols=101  Identities=23%  Similarity=0.317  Sum_probs=62.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHH---------------HHHcC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFET---------------ARARA  148 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~---------------a~~~~  148 (343)
                      .....++++|++||||+++|+++....   +.+|+.++|..+....      .-..+|..               .....
T Consensus       164 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~  237 (457)
T PRK11361        164 LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERAN  237 (457)
T ss_pred             CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECC
Confidence            344679999999999999999997654   4689999998764221      01111110               01112


Q ss_pred             CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCCEEEEEecCCC
Q psy7809         149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKGVLVLAATNHP  202 (343)
Q Consensus       149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~v~vI~ttn~~  202 (343)
                      .++|||||+|.|.         ...+..|+..++.-.     ... ...++.+|++|+..
T Consensus       238 ~gtl~ld~i~~l~---------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~  288 (457)
T PRK11361        238 EGTLLLDEIGEMP---------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD  288 (457)
T ss_pred             CCEEEEechhhCC---------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence            3699999999983         344556666654321     100 01257788888754

>KOG0480|consensus

Probab=98.31  E-value=2.5e-06  Score=82.72  Aligned_cols=148  Identities=21%  Similarity=0.172  Sum_probs=82.5

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc----CCccc---
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL----PSSLT---  126 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~----~~~l~---  126 (343)
                      -|..|.|.+.+|.-|.-.+..--....-..-.++.-.+|+|.|.||+|||-+.++.+.-+-..+|..-    .+.|.   
T Consensus       343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV  422 (764)
T KOG0480|consen  343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV  422 (764)
T ss_pred             hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence            35678899999888775553211111000011355568999999999999999999977655444321    11111   


Q ss_pred             ------cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC--------CCCCC
Q psy7809         127 ------SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG--------SGDKG  192 (343)
Q Consensus       127 ------~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~  192 (343)
                            +.|.-+....     -.   ...+|-+|||||++-..         -..++.+.|++..-.        .-+.+
T Consensus       423 vkD~esgdf~iEAGAL-----mL---ADnGICCIDEFDKMd~~---------dqvAihEAMEQQtISIaKAGv~aTLnAR  485 (764)
T KOG0480|consen  423 VKDEESGDFTIEAGAL-----ML---ADNGICCIDEFDKMDVK---------DQVAIHEAMEQQTISIAKAGVVATLNAR  485 (764)
T ss_pred             EecCCCCceeeecCcE-----EE---ccCceEEechhcccChH---------hHHHHHHHHHhheehheecceEEeecch
Confidence                  1111111000     00   11369999999999321         122344444421100        00224


Q ss_pred             EEEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809         193 VLVLAATNHPW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       193 v~vI~ttn~~~-------------~l~~~l~~rf~~~i~  218 (343)
                      .-||+++|...             .++++++|||+..+.
T Consensus       486 tSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~Fi  524 (764)
T KOG0480|consen  486 TSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFI  524 (764)
T ss_pred             hhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEE
Confidence            56788888663             367999999987664

>COG1485 Predicted ATPase [General function prediction only]

Probab=98.30  E-value=1.1e-05  Score=73.64  Aligned_cols=138  Identities=23%  Similarity=0.306  Sum_probs=80.1

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCce-EEEcCCcccccc-------ccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTF-FNVLPSSLTSKH-------YGESEKLVRALFETARARAPAVIFIDEV  157 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~-~~v~~~~l~~~~-------~~~~~~~i~~~~~~a~~~~p~il~iDei  157 (343)
                      ..+++|++|||+-|+|||+|.-.+...+..+- ..+....++...       .|.. .-+..+-..... .-.||+|||+
T Consensus        62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF  139 (367)
T COG1485          62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAA-ETRVLCFDEF  139 (367)
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHh-cCCEEEeeee
Confidence            35779999999999999999999988764322 112111111100       0111 111111111111 1259999999


Q ss_pred             ccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC-CCCCH-HHhc-cccCcchHHHHHhhhhcCCCCCC
Q psy7809         158 DAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP-WDLDE-ALKR-RFEKRISPIQIIGLCLGEIRKDP  234 (343)
Q Consensus       158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~-~~l~~-~l~~-rf~~~i~r~~il~~~~~~~~~~~  234 (343)
                      ..=      ......+++.|++.|-       ..+|++++|+|.+ +.|-+ .+.| +|--   -.++++.++.-+.++.
T Consensus       140 ~Vt------DI~DAMiL~rL~~~Lf-------~~GV~lvaTSN~~P~~LY~dGlqR~~FLP---~I~li~~~~~v~~vD~  203 (367)
T COG1485         140 EVT------DIADAMILGRLLEALF-------ARGVVLVATSNTAPDNLYKDGLQRERFLP---AIDLIKSHFEVVNVDG  203 (367)
T ss_pred             eec------ChHHHHHHHHHHHHHH-------HCCcEEEEeCCCChHHhcccchhHHhhHH---HHHHHHHheEEEEecC
Confidence            532      2344566777777664       2378999999964 44432 3333 4433   4467888887777777


Q ss_pred             cccHHHH
Q psy7809         235 NVDVATL  241 (343)
Q Consensus       235 ~~~~~~l  241 (343)
                      ..|+...
T Consensus       204 ~~DYR~r  210 (367)
T COG1485         204 PVDYRLR  210 (367)
T ss_pred             Ccccccc
Confidence            7776543

>KOG2383|consensus

Probab=98.30  E-value=2e-06  Score=79.40  Aligned_cols=159  Identities=22%  Similarity=0.288  Sum_probs=87.1

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCce--EEEcCCccccc-----------c----ccchH----HHHHHHHHHH
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTF--FNVLPSSLTSK-----------H----YGESE----KLVRALFETA  144 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~--~~v~~~~l~~~-----------~----~~~~~----~~i~~~~~~a  144 (343)
                      -.+|+|++|||.-|||||+|.-.+...+....  -.+...+++..           .    .+...    .-+.-+-+..
T Consensus       111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI  190 (467)
T KOG2383|consen  111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI  190 (467)
T ss_pred             CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence            35689999999999999999999875442210  01111111100           0    00000    0011111111


Q ss_pred             HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC-CCCCCHHHhccccCcchHHHHH
Q psy7809         145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH-PWDLDEALKRRFEKRISPIQII  223 (343)
Q Consensus       145 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~-~~~l~~~l~~rf~~~i~r~~il  223 (343)
                      .. .-++|++||+..-      ..+..-+++.|...|-       ..++++++|+|+ |++|...=+.| +..+.-..+|
T Consensus       191 a~-ea~lLCFDEfQVT------DVADAmiL~rLf~~Lf-------~~GvVlvATSNR~P~dLYknGlQR-~~F~PfI~~L  255 (467)
T KOG2383|consen  191 AE-EAILLCFDEFQVT------DVADAMILKRLFEHLF-------KNGVVLVATSNRAPEDLYKNGLQR-ENFIPFIALL  255 (467)
T ss_pred             hh-hceeeeechhhhh------hHHHHHHHHHHHHHHH-------hCCeEEEEeCCCChHHHhhcchhh-hhhhhHHHHH
Confidence            11 1269999999432      3344556666666553       237999999997 45554322222 1222255688


Q ss_pred             hhhhcCCCCCCcccHHHHHHHc-cCC--C-HHHHHHHHHH
Q psy7809         224 GLCLGEIRKDPNVDVATLSKQL-IGY--S-GSDIRDLCQE  259 (343)
Q Consensus       224 ~~~~~~~~~~~~~~~~~la~~t-~g~--s-~~di~~l~~~  259 (343)
                      +..+.-+.+.+.+|+...+.-. .+|  . ..|+..++++
T Consensus       256 ~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~  295 (467)
T KOG2383|consen  256 EERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKE  295 (467)
T ss_pred             HHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHH
Confidence            8888888888999999444333 222  3 3377666554

>PRK15115 response regulator GlrR; Provisional

Probab=98.29  E-value=1.2e-05  Score=77.98  Aligned_cols=99  Identities=23%  Similarity=0.358  Sum_probs=61.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHH---------------HHHcCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFET---------------ARARAP  149 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~---------------a~~~~p  149 (343)
                      ....++|+|++||||+++|+++....   +.+|+.++|..+.....      -..+|..               ......
T Consensus       156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~  229 (444)
T PRK15115        156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEG  229 (444)
T ss_pred             CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence            34579999999999999999997764   47899999987643211      1111211               011123


Q ss_pred             cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCCEEEEEecCC
Q psy7809         150 AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKGVLVLAATNH  201 (343)
Q Consensus       150 ~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~v~vI~ttn~  201 (343)
                      +.|||||+|.|.         ...+..|+..++.-.     ... ....+.+|++|+.
T Consensus       230 gtl~l~~i~~l~---------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~  278 (444)
T PRK15115        230 GTLFLDEIGDMP---------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR  278 (444)
T ss_pred             CEEEEEccccCC---------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC
Confidence            689999999883         344555666554211     100 0125678888875

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.27  E-value=1.8e-06  Score=66.77  Aligned_cols=25  Identities=44%  Similarity=0.764  Sum_probs=21.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      |.|+||||+|||++|+.+|..+..+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999877543

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.23  E-value=2.7e-05  Score=63.34  Aligned_cols=27  Identities=33%  Similarity=0.428  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ....++++|+||+||||++..++..+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            345789999999999999999998773

>KOG2170|consensus

Probab=98.18  E-value=1.2e-05  Score=71.83  Aligned_cols=133  Identities=20%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----eE--EEcCCcccc-c
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----FF--NVLPSSLTS-K  128 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----~~--~v~~~~l~~-~  128 (343)
                      .|.||.-+++.+...+......+.     -+.|-.+=|+|++||||.++++.||+.+...     ++  ++...++-. +
T Consensus        83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~  157 (344)
T KOG2170|consen   83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS  157 (344)
T ss_pred             HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence            367887777777666654332221     1344456688999999999999999876321     11  010011110 1


Q ss_pred             cccch-HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC--CCCCEEEEEecCCCC
Q psy7809         129 HYGES-EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS--GDKGVLVLAATNHPW  203 (343)
Q Consensus       129 ~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~v~vI~ttn~~~  203 (343)
                      ++..- .+.-..+...+..++.+|+++||+|+|-         ..++.++--.++.+....  ...+.++|.-+|.-.
T Consensus       158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg  226 (344)
T KOG2170|consen  158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG  226 (344)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence            11111 2223334455566777899999999993         344555555555322211  133566777776543

>KOG0477|consensus

Probab=98.18  E-value=5.9e-06  Score=80.01  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=43.4

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .|.|.+.+|.++.-.+..-..+..-....++.-.++||+|.||||||-+.+.+++-....++.
T Consensus       450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~t  512 (854)
T KOG0477|consen  450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFT  512 (854)
T ss_pred             hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence            578999999998866643211111111123444689999999999999999999877665554

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.17  E-value=1.3e-05  Score=72.41  Aligned_cols=121  Identities=21%  Similarity=0.258  Sum_probs=61.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCce---EEEcCCccccccccchHHHHHHHHHHHHH-----------cCCcEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTF---FNVLPSSLTSKHYGESEKLVRALFETARA-----------RAPAVI  152 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~---~~v~~~~l~~~~~~~~~~~i~~~~~~a~~-----------~~p~il  152 (343)
                      ....++||+||+|||||++++.+-..+...-   ..++++..      .....+..+++....           ....|+
T Consensus        31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~  104 (272)
T PF12775_consen   31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL  104 (272)
T ss_dssp             HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred             HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence            3457899999999999999999877664332   22333221      122223222221110           123499


Q ss_pred             EEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC-----CCCCEEEEEecCCCC---CCCHHHhcccc
Q psy7809         153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS-----GDKGVLVLAATNHPW---DLDEALKRRFE  214 (343)
Q Consensus       153 ~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~~v~vI~ttn~~~---~l~~~l~~rf~  214 (343)
                      ||||+..-....-+....-+++.+++..= +.+...     .-.++.+|++++...   .+++.+.|.|.
T Consensus       105 fiDDlN~p~~d~ygtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~  173 (272)
T PF12775_consen  105 FIDDLNMPQPDKYGTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN  173 (272)
T ss_dssp             EEETTT-S---TTS--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE
T ss_pred             EecccCCCCCCCCCCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE
Confidence            99999765442222222223333333321 222211     123678899988643   35666666543

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=98.17  E-value=5e-07  Score=84.11  Aligned_cols=145  Identities=26%  Similarity=0.238  Sum_probs=71.5

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc-----cc----
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS-----LT----  126 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~-----l~----  126 (343)
                      ..|.|.+.+|..+.-.+..............+...++||.|.||+|||.|.+.+++.....++ ++...     +.    
T Consensus        24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~  102 (331)
T PF00493_consen   24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVS  102 (331)
T ss_dssp             STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEEC
T ss_pred             CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceec
Confidence            467899998888764333211110000011245568999999999999999988755443332 22211     11    


Q ss_pred             -----cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-C-------CCCCE
Q psy7809         127 -----SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-S-------GDKGV  193 (343)
Q Consensus       127 -----~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~-------~~~~v  193 (343)
                           +.+.-+..     .+-.|   ..+|++|||+|.+-.         .....|.+.|+.-.-. .       -+.+.
T Consensus       103 ~d~~~~~~~leaG-----alvla---d~GiccIDe~dk~~~---------~~~~~l~eaMEqq~isi~kagi~~~l~ar~  165 (331)
T PF00493_consen  103 RDPVTGEWVLEAG-----ALVLA---DGGICCIDEFDKMKE---------DDRDALHEAMEQQTISIAKAGIVTTLNARC  165 (331)
T ss_dssp             CCGGTSSECEEE------HHHHC---TTSEEEECTTTT--C---------HHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred             cccccceeEEeCC-----chhcc---cCceeeecccccccc---------hHHHHHHHHHHcCeeccchhhhcccccchh
Confidence                 11111111     11112   237999999999832         2344555555531100 0       02357


Q ss_pred             EEEEecCCCC-------------CCCHHHhccccCcch
Q psy7809         194 LVLAATNHPW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       194 ~vI~ttn~~~-------------~l~~~l~~rf~~~i~  218 (343)
                      .|++++|...             .+++.+++||+-.+.
T Consensus       166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~  203 (331)
T PF00493_consen  166 SVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFL  203 (331)
T ss_dssp             EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEEC
T ss_pred             hhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEE
Confidence            7899998765             367889999997764

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=98.16  E-value=7e-06  Score=77.34  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=54.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR  165 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~  165 (343)
                      ....++++.||+|||||+++.+++... -..--.++...+....    .   ...+.  .-..+++|+|||+..+.-   
T Consensus       207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L----~---~~~lg--~v~~~DlLI~DEvgylp~---  274 (449)
T TIGR02688       207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNI----S---TRQIG--LVGRWDVVAFDEVATLKF---  274 (449)
T ss_pred             hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHH----H---HHHHh--hhccCCEEEEEcCCCCcC---
Confidence            456799999999999999999987651 1000222222222110    0   01111  123457999999988643   


Q ss_pred             chhhhHHHHHHHhhhcccC------CCCCCCCCEEEEEecCC
Q psy7809         166 EHEATRRVRCELLSHMDGV------GTGSGDKGVLVLAATNH  201 (343)
Q Consensus       166 ~~~~~~~~~~~ll~~l~~~------~~~~~~~~v~vI~ttn~  201 (343)
                        .....+...|...|+.-      ........++++|-++.
T Consensus       275 --~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~  314 (449)
T TIGR02688       275 --AKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL  314 (449)
T ss_pred             --CchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence              12233445555555421      11111335677776664

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.16  E-value=1.4e-05  Score=67.86  Aligned_cols=71  Identities=27%  Similarity=0.295  Sum_probs=44.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc--------------------------cc-----cchH---
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK--------------------------HY-----GESE---  134 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~--------------------------~~-----~~~~---  134 (343)
                      ++++||||||||+++..++.+.   +..+.+++..+-...                          ..     +...   
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~   81 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL   81 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence            6899999999999999887653   556666654221100                          00     0000   


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809         135 KLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       135 ~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                      ..+..+...+....|.+++||++..+..
T Consensus        82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~  109 (187)
T cd01124          82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL  109 (187)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence            1124444555667889999999987754

A related protein is found in archaea.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.12  E-value=1.7e-05  Score=77.36  Aligned_cols=101  Identities=22%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHH---------------HHHHcC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFE---------------TARARA  148 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~---------------~a~~~~  148 (343)
                      .....+++.|.+||||+++|+++....   +.+|+.++|..+.....      -..+|.               ......
T Consensus       155 ~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~  228 (463)
T TIGR01818       155 RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQAD  228 (463)
T ss_pred             CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECC
Confidence            344579999999999999999998764   46899999987633211      001111               001112


Q ss_pred             CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCCEEEEEecCCC
Q psy7809         149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKGVLVLAATNHP  202 (343)
Q Consensus       149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~v~vI~ttn~~  202 (343)
                      .+.|||||++.|.         ......|+..++.-.     .. .....+.+|++|+..
T Consensus       229 ~gtl~l~ei~~l~---------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~  279 (463)
T TIGR01818       229 GGTLFLDEIGDMP---------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN  279 (463)
T ss_pred             CCeEEEEchhhCC---------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence            4789999999883         234555665554211     10 001245677777653

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.11  E-value=1.8e-05  Score=76.61  Aligned_cols=79  Identities=29%  Similarity=0.421  Sum_probs=54.9

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------cc--------chHHHHHHHHHHHHH
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------YG--------ESEKLVRALFETARA  146 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------~~--------~~~~~i~~~~~~a~~  146 (343)
                      +++.+...++|+|+||+|||+++..+|...   +..+++++..+-....      .+        .....+..++.....
T Consensus        75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~  154 (446)
T PRK11823         75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE  154 (446)
T ss_pred             CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence            345666789999999999999999998765   5677777764422111      00        011224556666677


Q ss_pred             cCCcEEEEcccccccC
Q psy7809         147 RAPAVIFIDEVDAFCS  162 (343)
Q Consensus       147 ~~p~il~iDeid~l~~  162 (343)
                      ..|.+|+||.+..+..
T Consensus       155 ~~~~lVVIDSIq~l~~  170 (446)
T PRK11823        155 EKPDLVVIDSIQTMYS  170 (446)
T ss_pred             hCCCEEEEechhhhcc
Confidence            7899999999998865

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.10  E-value=3.2e-06  Score=66.54  Aligned_cols=31  Identities=39%  Similarity=0.679  Sum_probs=27.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ++|.|+||+||||+|+.+|..++.+++.++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            6899999999999999999999988776654

...

>TIGR02012 tigrfam_recA protein RecA

Probab=98.09  E-value=2.6e-05  Score=71.74  Aligned_cols=79  Identities=25%  Similarity=0.280  Sum_probs=52.2

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc----------------ccccchHHHHHHHHHHH
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS----------------KHYGESEKLVRALFETA  144 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a  144 (343)
                      +++.....++|+||||||||+|+..++...   +....++++.+...                ......+..+..+....
T Consensus        50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li  129 (321)
T TIGR02012        50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV  129 (321)
T ss_pred             CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence            345666789999999999999998876544   56667776543221                11122233344444444


Q ss_pred             HHcCCcEEEEcccccccC
Q psy7809         145 RARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       145 ~~~~p~il~iDeid~l~~  162 (343)
                      ....+.+|+||-+-.+.+
T Consensus       130 ~~~~~~lIVIDSv~al~~  147 (321)
T TIGR02012       130 RSGAVDIIVVDSVAALVP  147 (321)
T ss_pred             hccCCcEEEEcchhhhcc
Confidence            556789999999998875

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.09  E-value=1.2e-05  Score=70.73  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=32.5

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      +++..+..++|+|+||+|||+++..+|.+.   +..++++++.
T Consensus        18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            445667789999999999999999998654   6677888776

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.08  E-value=6.7e-05  Score=68.28  Aligned_cols=41  Identities=32%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          62 DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        62 ~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +..+++|.+.+....          .....+.|+|++|+|||+||+.+++.
T Consensus         2 e~~~~~l~~~L~~~~----------~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    2 EKEIEKLKDWLLDNS----------NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHHHHHTTT----------TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhCCC----------CCeEEEEEEcCCcCCcceeeeecccc
Confidence            344556665554321          34567899999999999999999977

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PHA02624 large T antigen; Provisional

Probab=98.07  E-value=2.9e-05  Score=76.15  Aligned_cols=120  Identities=19%  Similarity=0.158  Sum_probs=70.0

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR  165 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~  165 (343)
                      ++..+.++|+||+|||||+++.++++.++...+.++++.-..          +-.+..+..  ..+.+||++-.-+-...
T Consensus       428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks----------~FwL~pl~D--~~~~l~dD~t~~~~~~~  495 (647)
T PHA02624        428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL----------NFELGCAID--QFMVVFEDVKGQPADNK  495 (647)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh----------HHHhhhhhh--ceEEEeeeccccccccc
Confidence            355568999999999999999999999976677776443211          111111211  15888999854332111


Q ss_pred             --chhhhHHHHHHHhhhcccCCCCC---C------CCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809         166 --EHEATRRVRCELLSHMDGVGTGS---G------DKGVLVLAATNHPWDLDEALKRRFEKRIS  218 (343)
Q Consensus       166 --~~~~~~~~~~~ll~~l~~~~~~~---~------~~~v~vI~ttn~~~~l~~~l~~rf~~~i~  218 (343)
                        ..+..-.-+..|...|||.-..+   +      ..--.+|.|+|. ..++..+.-||...+.
T Consensus       496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~  558 (647)
T PHA02624        496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLD  558 (647)
T ss_pred             cCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhcc
Confidence              00111112345666777651110   0      001235666665 5688888889888876

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=98.06  E-value=2.1e-05  Score=68.52  Aligned_cols=73  Identities=22%  Similarity=0.227  Sum_probs=40.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc--cc--------cccccchHHHHHHHHHHHHH--cCCcEEEEc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS--LT--------SKHYGESEKLVRALFETARA--RAPAVIFID  155 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~--l~--------~~~~~~~~~~i~~~~~~a~~--~~p~il~iD  155 (343)
                      .+..+||||+||+|||++|+.++..  .-++..+...  +.        ..........+.+.+..+..  ..+..|+||
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID   88 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID   88 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence            3567999999999999999998632  2222222211  00        00011112223333333322  335799999


Q ss_pred             ccccccC
Q psy7809         156 EVDAFCS  162 (343)
Q Consensus       156 eid~l~~  162 (343)
                      +++.+..
T Consensus        89 sI~~l~~   95 (220)
T TIGR01618        89 NISALQN   95 (220)
T ss_pred             cHHHHHH
Confidence            9998753

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.06  E-value=5.3e-06  Score=69.45  Aligned_cols=23  Identities=48%  Similarity=0.765  Sum_probs=20.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +++|+|+||+||||+++.++..+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            47999999999999999999887

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=98.05  E-value=7.7e-06  Score=70.23  Aligned_cols=118  Identities=18%  Similarity=0.222  Sum_probs=56.0

Q ss_pred             EEEEcCCCchHHHHHHHH-HHH---hCCceEEEcCCccccccccc----hHH-------------HHHHHHHHHHHcCCc
Q psy7809          92 ILLFGPPGTGKTLLAKAV-ASQ---HGSTFFNVLPSSLTSKHYGE----SEK-------------LVRALFETARARAPA  150 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~i-a~~---l~~~~~~v~~~~l~~~~~~~----~~~-------------~i~~~~~~a~~~~p~  150 (343)
                      .+++|.||+|||+.|-.. ...   -|.+++. +...+.-.....    ...             ..............+
T Consensus         3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (193)
T PF05707_consen    3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS   81 (193)
T ss_dssp             EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred             EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence            578999999999987655 332   2555554 443232111111    000             001111111111457


Q ss_pred             EEEEcccccccCCCCc-hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809         151 VIFIDEVDAFCSGSRE-HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS  218 (343)
Q Consensus       151 il~iDeid~l~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~  218 (343)
                      ||+|||+..+++.... ........ .++......       ++-||.+|.++..+++.+++..+..++
T Consensus        82 liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~-------g~diiliTQ~~~~id~~ir~lve~~~~  142 (193)
T PF05707_consen   82 LIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHY-------GWDIILITQSPSQIDKFIRDLVEYHYH  142 (193)
T ss_dssp             EEEETTGGGTSB---T-T----HHH-HGGGGCCCT-------T-EEEEEES-GGGB-HHHHCCEEEEEE
T ss_pred             EEEEECChhhcCCCccccccchHHH-HHHHHhCcC-------CcEEEEEeCCHHHHhHHHHHHHheEEE
Confidence            9999999999875444 22223333 344443322       678999999999999999886555554

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PF05729 NACHT: NACHT domain

Probab=98.04  E-value=1.5e-05  Score=66.01  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      -++|+|++|+|||++++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            47899999999999999999776

>PLN03210 Resistant to P

Probab=98.02  E-value=4.2e-05  Score=82.76  Aligned_cols=75  Identities=19%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             CCCChhHHHHhhccccccC---CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHH
Q psy7809          32 RRANPELTALVEKDIVQTD---TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKA  108 (343)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~  108 (343)
                      ...+.++.+.+..+++.+.   +...+++++|++...+.+...+....          ....-+-|+|++|+||||||++
T Consensus       157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----------~~~~vvgI~G~gGiGKTTLA~~  226 (1153)
T PLN03210        157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----------EEVRMVGIWGSSGIGKTTIARA  226 (1153)
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----------CceEEEEEEcCCCCchHHHHHH
Confidence            3456667777777765444   45677899999999999988775321          3445688999999999999999


Q ss_pred             HHHHhCCc
Q psy7809         109 VASQHGST  116 (343)
Q Consensus       109 ia~~l~~~  116 (343)
                      +++.+..+
T Consensus       227 l~~~l~~~  234 (1153)
T PLN03210        227 LFSRLSRQ  234 (1153)
T ss_pred             HHHHHhhc
Confidence            98877543

syringae 6; Provisional

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.02  E-value=3.7e-05  Score=72.52  Aligned_cols=78  Identities=26%  Similarity=0.362  Sum_probs=53.4

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------cc--------chHHHHHHHHHHHHHc
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------YG--------ESEKLVRALFETARAR  147 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------~~--------~~~~~i~~~~~~a~~~  147 (343)
                      ++.+..-++|+|+||+|||+++..+|..+   +..+++++..+-....      .+        .....+..++..+...
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~  157 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL  157 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence            34666779999999999999999998765   3467777654321110      00        0112345666666777


Q ss_pred             CCcEEEEcccccccC
Q psy7809         148 APAVIFIDEVDAFCS  162 (343)
Q Consensus       148 ~p~il~iDeid~l~~  162 (343)
                      .|.+|+||++..+..
T Consensus       158 ~~~lVVIDSIq~l~~  172 (372)
T cd01121         158 KPDLVIIDSIQTVYS  172 (372)
T ss_pred             CCcEEEEcchHHhhc
Confidence            899999999998864

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>KOG1968|consensus

Probab=97.99  E-value=1.6e-05  Score=81.80  Aligned_cols=201  Identities=20%  Similarity=0.193  Sum_probs=113.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhcccc-ChHHHhccCCCC--c-eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKL-MPQLFKGILRPW--R-GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~-~~~~~~~~~~~~--~-~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+..++.+....++.|.......+...+..... .+..+.......  . .++++||||+|||+.+..+|.+++..+++.
T Consensus       309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~  388 (871)
T KOG1968|consen  309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK  388 (871)
T ss_pred             ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence            344556666667788776666566665554311 111111111111  2 368999999999999999999999999999


Q ss_pred             cCCccccccccch-------HHHHHHHH---HHHHH-cCC-cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC
Q psy7809         121 LPSSLTSKHYGES-------EKLVRALF---ETARA-RAP-AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS  188 (343)
Q Consensus       121 ~~~~l~~~~~~~~-------~~~i~~~~---~~a~~-~~p-~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~  188 (343)
                      +..+..++.....       ...+...+   ..... ... .||++||+|.+...      .+..+..+...+..     
T Consensus       389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~------dRg~v~~l~~l~~k-----  457 (871)
T KOG1968|consen  389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE------DRGGVSKLSSLCKK-----  457 (871)
T ss_pred             CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch------hhhhHHHHHHHHHh-----
Confidence            9988776543211       11122222   00000 111 29999999988651      22233333333331     


Q ss_pred             CCCCEEEEEecCCCCCCCHHHhcc--ccCcch-------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809         189 GDKGVLVLAATNHPWDLDEALKRR--FEKRIS-------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQE  259 (343)
Q Consensus       189 ~~~~v~vI~ttn~~~~l~~~l~~r--f~~~i~-------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~  259 (343)
                        ..+-+|+++|+.......-+.+  |+.++.       +..|..++........+-.++.+.+.+    ++||++.+..
T Consensus       458 --s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~  531 (871)
T KOG1968|consen  458 --SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQ  531 (871)
T ss_pred             --ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence              1456888888876654322222  333333       444444444444334455566776666    6788776554


Q ss_pred             HHH
Q psy7809         260 IIL  262 (343)
Q Consensus       260 A~~  262 (343)
                      -.+
T Consensus       532 lq~  534 (871)
T KOG1968|consen  532 LQF  534 (871)
T ss_pred             Hhh
Confidence            333

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.99  E-value=8.6e-05  Score=65.29  Aligned_cols=100  Identities=24%  Similarity=0.298  Sum_probs=62.3

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCcccc--------------------------cc----
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTS--------------------------KH----  129 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~--------------------------~~----  129 (343)
                      +++..+..+|+.||||+|||+++..++...    +...++++..+-..                          ..    
T Consensus        14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~   93 (226)
T PF06745_consen   14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI   93 (226)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred             CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence            455777889999999999999999876432    66766665422110                          00    


Q ss_pred             ---ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         130 ---YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       130 ---~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                         .......+..+........+.+++||.+..+ ............+..+...+...
T Consensus        94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~~~~~~~r~~l~~l~~~l~~~  150 (226)
T PF06745_consen   94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLYDDPEELRRFLRALIKFLKSR  150 (226)
T ss_dssp             T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTSSSGGGHHHHHHHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhcCCHHHHHHHHHHHHHHHHHC
Confidence               1123344555556666677899999999999 32233333445666676666433

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.99  E-value=7.9e-06  Score=79.68  Aligned_cols=61  Identities=18%  Similarity=0.348  Sum_probs=45.8

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-CceEEE
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-STFFNV  120 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-~~~~~v  120 (343)
                      -|+|+.|++++++++.+++....      .++......++|.||||+|||+||+++|+.+. .+++.+
T Consensus        74 fF~d~yGlee~ieriv~~l~~Aa------~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~  135 (644)
T PRK15455         74 AFEEFYGMEEAIEQIVSYFRHAA------QGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL  135 (644)
T ss_pred             chhcccCcHHHHHHHHHHHHHHH------HhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence            46799999999999999884321      11223445788999999999999999998774 345544

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.99  E-value=4.7e-05  Score=70.09  Aligned_cols=78  Identities=23%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc----------------ccccchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS----------------KHYGESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a~  145 (343)
                      ++....-+.++||||+|||+||-.++...   +....+++..+-..                ......+..+..+...+.
T Consensus        51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~  130 (325)
T cd00983          51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR  130 (325)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence            45666779999999999999999887543   66777776633111                111122333333333445


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...+++|+||-+-.+.+
T Consensus       131 s~~~~lIVIDSvaal~~  147 (325)
T cd00983         131 SGAVDLIVVDSVAALVP  147 (325)
T ss_pred             ccCCCEEEEcchHhhcc
Confidence            56789999999998875

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK07261 topology modulation protein; Provisional

Probab=97.98  E-value=2.2e-05  Score=65.99  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      -++|.|+||+||||+|+.++..++.+++.++.-.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~   35 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH   35 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence            3789999999999999999999998887776433

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.98  E-value=0.00017  Score=62.07  Aligned_cols=99  Identities=24%  Similarity=0.353  Sum_probs=51.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch----HHHHHHHHHHHH---------HcCCcEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES----EKLVRALFETAR---------ARAPAVI  152 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~----~~~i~~~~~~a~---------~~~p~il  152 (343)
                      .+.++|.||||||||++++.+...+   +..++.+.+..-........    ...+..++....         .....+|
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl   97 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL   97 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence            3467889999999999999987554   45566554432211100000    000111111110         1233699


Q ss_pred             EEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       153 ~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      +|||+..+         ....+..++..+...     ..+++++|-.+.
T Consensus        98 iVDEasmv---------~~~~~~~ll~~~~~~-----~~klilvGD~~Q  132 (196)
T PF13604_consen   98 IVDEASMV---------DSRQLARLLRLAKKS-----GAKLILVGDPNQ  132 (196)
T ss_dssp             EESSGGG----------BHHHHHHHHHHS-T------T-EEEEEE-TTS
T ss_pred             EEeccccc---------CHHHHHHHHHHHHhc-----CCEEEEECCcch
Confidence            99999655         445566666666532     236778886654

>PRK08118 topology modulation protein; Reviewed

Probab=97.97  E-value=2.2e-05  Score=65.80  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=29.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      .|++.||||+||||+|+.+++.++.+++.++.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~   34 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA   34 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence            58999999999999999999999999888764

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=97.97  E-value=3e-05  Score=70.84  Aligned_cols=134  Identities=23%  Similarity=0.310  Sum_probs=86.3

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      +...+...|+.+++.....+.+.+.....          ..-...+||.|.+||||-.+|+++-...   ..+|+.++|.
T Consensus       195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA  264 (511)
T COG3283         195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCA  264 (511)
T ss_pred             cccccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecC
Confidence            34456678888998876666655433211          0122468999999999999999885443   5789999998


Q ss_pred             ccccccc-----cch--HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC--C----C
Q psy7809         124 SLTSKHY-----GES--EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS--G----D  190 (343)
Q Consensus       124 ~l~~~~~-----~~~--~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~----~  190 (343)
                      .+-....     |..  ..--..+|..|..   +-+|+|||..+         +.+++..|+.++..=.-..  .    .
T Consensus       265 ~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm---------Sp~lQaKLLRFL~DGtFRRVGee~Ev~  332 (511)
T COG3283         265 SLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM---------SPRLQAKLLRFLNDGTFRRVGEDHEVH  332 (511)
T ss_pred             CCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc---------CHHHHHHHHHHhcCCceeecCCcceEE
Confidence            7654311     111  1122345655544   57899999655         6688889999886321110  0    1


Q ss_pred             CCEEEEEecCCC
Q psy7809         191 KGVLVLAATNHP  202 (343)
Q Consensus       191 ~~v~vI~ttn~~  202 (343)
                      -.|.||++|..+
T Consensus       333 vdVRVIcatq~n  344 (511)
T COG3283         333 VDVRVICATQVN  344 (511)
T ss_pred             EEEEEEeccccc
Confidence            257899998764

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.96  E-value=3e-05  Score=60.90  Aligned_cols=52  Identities=17%  Similarity=0.188  Sum_probs=37.8

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .|.||.-+.+.+...+...+..+     .-..|--+-|+|++|||||++++.||+.+
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            57898888777777766543222     11333445689999999999999999986

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.96  E-value=0.0001  Score=65.01  Aligned_cols=77  Identities=26%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc-----------------------------cc--
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK-----------------------------HY--  130 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~-----------------------------~~--  130 (343)
                      ++.+...+++.|++|||||+++..++...   +....+++..+-...                             ..  
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~   99 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN   99 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence            34666789999999999999987665543   455555543211100                             00  


Q ss_pred             cchHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809         131 GESEKLVRALFETARARAPAVIFIDEVDAFC  161 (343)
Q Consensus       131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~  161 (343)
                      ......+..+........|.+++||++-.+.
T Consensus       100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l  130 (230)
T PRK08533        100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI  130 (230)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence            0012334445555555578999999998765

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.93  E-value=1.1e-05  Score=67.54  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++..++|+|+||||||++++.+|..++.+++..+
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d   36 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD   36 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            45678999999999999999999999998887653

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.90  E-value=0.00014  Score=64.46  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=29.3

Q ss_pred             hccCCCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEc
Q psy7809          83 KGILRPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVL  121 (343)
Q Consensus        83 ~~~~~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~  121 (343)
                      .+++.++..++++||||+|||+++..++.+   -|.+.++++
T Consensus        15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs   56 (237)
T TIGR03877        15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA   56 (237)
T ss_pred             cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            345677888999999999999999887654   244555554

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK09354 recA recombinase A; Provisional

Probab=97.90  E-value=0.0001  Score=68.42  Aligned_cols=79  Identities=24%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCcccc----------------ccccchHHHHHHHHHHH
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTS----------------KHYGESEKLVRALFETA  144 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a  144 (343)
                      +++.....++|+||+|||||+|+-.++..   .+...++++..+-..                ......+..+..+-...
T Consensus        55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li  134 (349)
T PRK09354         55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV  134 (349)
T ss_pred             CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence            34566678999999999999999988644   366677776544211                01111223333333334


Q ss_pred             HHcCCcEEEEcccccccC
Q psy7809         145 RARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       145 ~~~~p~il~iDeid~l~~  162 (343)
                      ....+.+|+||-+-.+.+
T Consensus       135 ~s~~~~lIVIDSvaaL~~  152 (349)
T PRK09354        135 RSGAVDLIVVDSVAALVP  152 (349)
T ss_pred             hcCCCCEEEEeChhhhcc
Confidence            556788999999998875

>KOG0481|consensus

Probab=97.90  E-value=0.00048  Score=65.73  Aligned_cols=150  Identities=22%  Similarity=0.210  Sum_probs=78.7

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc----CCcccc---
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL----PSSLTS---  127 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~----~~~l~~---  127 (343)
                      .|.|.+++|+++.=.+..  ........+  .+..-+|||.|.|||.||-|.+-+-+-.-.-++.--    ...|..   
T Consensus       332 SIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~  409 (729)
T KOG0481|consen  332 SIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI  409 (729)
T ss_pred             hhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence            678999999999855432  222222222  344568999999999999999988665433333211    011110   


Q ss_pred             -------ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         128 -------KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       128 -------~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                             .|..+...        .. ...+|++|||+|++-....-.-....-+.++.-.-.++...- +++.-|++++|
T Consensus       410 RD~~tReFylEGGAM--------VL-ADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~L-NSRtSVLAAAN  479 (729)
T KOG0481|consen  410 RDPSTREFYLEGGAM--------VL-ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTL-NSRTSVLAAAN  479 (729)
T ss_pred             ecCCcceEEEecceE--------EE-ecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeee-cchhhhhhhcC
Confidence                   01111000        00 012699999999994321110000000001111111332222 34667888888


Q ss_pred             CCC-----------C--CCHHHhccccCcch
Q psy7809         201 HPW-----------D--LDEALKRRFEKRIS  218 (343)
Q Consensus       201 ~~~-----------~--l~~~l~~rf~~~i~  218 (343)
                      .+.           .  ..+.+++||+-.+-
T Consensus       480 pvfGRyDd~Kt~~dNIDf~~TILSRFDmIFI  510 (729)
T KOG0481|consen  480 PVFGRYDDTKTGEDNIDFMPTILSRFDMIFI  510 (729)
T ss_pred             CccccccccCCcccccchhhhHhhhccEEEE
Confidence            652           2  34899999986653

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=97.89  E-value=3.3e-05  Score=74.91  Aligned_cols=101  Identities=21%  Similarity=0.312  Sum_probs=61.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHH---------------HHHcC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFET---------------ARARA  148 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~---------------a~~~~  148 (343)
                      .....++++|.+|+||+++|+++-...   +.+|+.++|..+.....      -..+|..               .....
T Consensus       160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~  233 (441)
T PRK10365        160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEAD  233 (441)
T ss_pred             CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECC
Confidence            344679999999999999999997654   46899999987542211      0111110               11123


Q ss_pred             CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC-CCCCEEEEEecCCC
Q psy7809         149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS-GDKGVLVLAATNHP  202 (343)
Q Consensus       149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~-~~~~v~vI~ttn~~  202 (343)
                      .++|||||+|.|..         ..+..|+..++.-.     ... ....+.+|++|+..
T Consensus       234 ~gtl~ldei~~l~~---------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~  284 (441)
T PRK10365        234 GGTLFLDEIGDISP---------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD  284 (441)
T ss_pred             CCEEEEeccccCCH---------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC
Confidence            57899999999842         34455555554311     100 01245677777653

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.89  E-value=1.3e-05  Score=67.85  Aligned_cols=59  Identities=20%  Similarity=0.265  Sum_probs=38.0

Q ss_pred             ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---eEEEcCCcc
Q psy7809          58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---FFNVLPSSL  125 (343)
Q Consensus        58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~~~~l  125 (343)
                      ++|.++..+++...+. ...        ...+..++|+|++|+|||++++.+...+..+   ++.+.+...
T Consensus         2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS   63 (185)
T ss_dssp             -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred             CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence            6899999999998884 111        1455789999999999999999998766433   666666554

>KOG1942|consensus

Probab=97.88  E-value=2.3e-05  Score=69.72  Aligned_cols=81  Identities=31%  Similarity=0.401  Sum_probs=56.1

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccccccch
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGES  133 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~~~~~~  133 (343)
                      ..++||++.+++.--.+...       ....-.++.+||.||||||||.||-+++.++|  .||..+..+++.+..+..+
T Consensus        38 ~g~vGQ~~AReAagiivdli-------k~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKT  110 (456)
T KOG1942|consen   38 AGFVGQENAREAAGIIVDLI-------KSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKT  110 (456)
T ss_pred             cccccchhhhhhhhHHHHHH-------HhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHH
Confidence            46899998888754433321       11114567899999999999999999999996  5777777777776655444


Q ss_pred             HHHHHHHHHHH
Q psy7809         134 EKLVRALFETA  144 (343)
Q Consensus       134 ~~~i~~~~~~a  144 (343)
                      +. +.+-|+.+
T Consensus       111 Ev-LmenfRRa  120 (456)
T KOG1942|consen  111 EV-LMENFRRA  120 (456)
T ss_pred             HH-HHHHHHHH
Confidence            33 33444444

>KOG0479|consensus

Probab=97.87  E-value=0.00025  Score=68.57  Aligned_cols=151  Identities=28%  Similarity=0.282  Sum_probs=82.8

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccch--
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES--  133 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~--  133 (343)
                      .|.|.+.+|++|.-++..-. ...+..+ .++.--++|+.|.|.+.||-|.|.+.+.....+-.-   .-.+..+|-+  
T Consensus       302 SI~GH~~vKkAillLLlGGv-Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TT---GRGSSGVGLTAA  377 (818)
T KOG0479|consen  302 SIYGHDYVKKAILLLLLGGV-EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATT---GRGSSGVGLTAA  377 (818)
T ss_pred             ccccHHHHHHHHHHHHhccc-eeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccccccc---CCCCCCccceeE
Confidence            57899999999886664321 1111111 134456899999999999999999976542211110   0000111110  


Q ss_pred             -----HHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhh----c--ccCCCCCCCCCEEEEEecCC
Q psy7809         134 -----EKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSH----M--DGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       134 -----~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~----l--~~~~~~~~~~~v~vI~ttn~  201 (343)
                           +..-+.+-.-|.- ...+|++|||||++..      ..+-...+.+++    +  .+++..- +.+.-||+++|.
T Consensus       378 VTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsD------iDRvAIHEVMEQqtVTIaKAGIHasL-NARCSVlAAANP  450 (818)
T KOG0479|consen  378 VTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSD------IDRVAIHEVMEQQTVTIAKAGIHASL-NARCSVLAAANP  450 (818)
T ss_pred             EeeccccchhhhhcCceEEccCceEEehhcccccc------hhHHHHHHHHhcceEEeEeccchhhh-ccceeeeeecCc
Confidence                 0001111111111 1136999999999942      222222232221    1  1333322 447889999997


Q ss_pred             CC-------------CCCHHHhccccCcch
Q psy7809         202 PW-------------DLDEALKRRFEKRIS  218 (343)
Q Consensus       202 ~~-------------~l~~~l~~rf~~~i~  218 (343)
                      .+             .|+..+++||+..+.
T Consensus       451 vyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv  480 (818)
T KOG0479|consen  451 VYGQYDQSKTPMENIGLPDSLLSRFDLLFV  480 (818)
T ss_pred             cccccCCCCChhhccCCcHHHHhhhcEEEE
Confidence            64             278899999987664

>cd01394 radB RadB

Probab=97.87  E-value=9.6e-05  Score=64.60  Aligned_cols=40  Identities=30%  Similarity=0.425  Sum_probs=31.1

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      +++..+.-++|+|+||+|||+++..+|.+.   +.++++++..
T Consensus        14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            345666779999999999999999998765   4566667543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.85  E-value=7.9e-05  Score=65.84  Aligned_cols=79  Identities=18%  Similarity=0.166  Sum_probs=49.4

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCccccc-c------------------------
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTSK-H------------------------  129 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~~-~------------------------  129 (343)
                      +++....-+.|+||||+|||+++..++...         +...++++..+-... .                        
T Consensus        14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~   93 (235)
T cd01123          14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA   93 (235)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence            345666778999999999999999998543         246677765442110 0                        


Q ss_pred             --ccchHHHHHHHHHHHHHc-CCcEEEEcccccccC
Q psy7809         130 --YGESEKLVRALFETARAR-APAVIFIDEVDAFCS  162 (343)
Q Consensus       130 --~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~  162 (343)
                        ..+....+..+....... .+.+|+||-+..++.
T Consensus        94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~  129 (235)
T cd01123          94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR  129 (235)
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence              001111223333333445 788999999998753

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF14516 AAA_35: AAA-like domain

Probab=97.85  E-value=0.00089  Score=62.44  Aligned_cols=40  Identities=23%  Similarity=0.177  Sum_probs=32.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT  126 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~  126 (343)
                      .++..+.|.||..+|||++...+.+.+   +...+++++..+.
T Consensus        29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~   71 (331)
T PF14516_consen   29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG   71 (331)
T ss_pred             cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence            456789999999999999999987655   6777888776654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.84  E-value=0.00011  Score=69.01  Aligned_cols=110  Identities=22%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh----C-CceEEEcCCcccc--------------ccc--cchHHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH----G-STFFNVLPSSLTS--------------KHY--GESEKLVRALFETAR  145 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l----~-~~~~~v~~~~l~~--------------~~~--~~~~~~i~~~~~~a~  145 (343)
                      ..+..++|.||+|+||||++..+|..+    + ..+..+....+..              ..+  ......+...+.  .
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~  212 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--E  212 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--H
Confidence            445679999999999999999998764    3 2344444333210              000  001111222222  2


Q ss_pred             HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809         146 ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA  208 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~  208 (343)
                      .....+|+||.+.....        ...+...+..+.....  ....++|+.+++..+.+...
T Consensus       213 l~~~DlVLIDTaG~~~~--------d~~l~e~La~L~~~~~--~~~~lLVLsAts~~~~l~ev  265 (374)
T PRK14722        213 LRNKHMVLIDTIGMSQR--------DRTVSDQIAMLHGADT--PVQRLLLLNATSHGDTLNEV  265 (374)
T ss_pred             hcCCCEEEEcCCCCCcc--------cHHHHHHHHHHhccCC--CCeEEEEecCccChHHHHHH
Confidence            23457999999954311        1122333333432221  12357777777777666543

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.83  E-value=9.1e-05  Score=66.75  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEE-cCCcccc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNV-LPSSLTS  127 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v-~~~~l~~  127 (343)
                      ...+++++-.++..+.+.+.+..             +...++|.||+|+||||+++++...+.   ..++.+ ++.++.-
T Consensus        56 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~  122 (264)
T cd01129          56 ILDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI  122 (264)
T ss_pred             CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence            34667776666777777666532             334589999999999999999977764   234444 2222221


Q ss_pred             c-----ccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         128 K-----HYG-ESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       128 ~-----~~~-~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      .     .+. .....+..++..+....|++|+++|+.
T Consensus       123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR  159 (264)
T cd01129         123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR  159 (264)
T ss_pred             CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence            1     111 111236677777778899999999994

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.00053  Score=60.15  Aligned_cols=166  Identities=16%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCc---eEEEcCCcccccc---------cc----ch----HHHHHHHHHHHHH-cCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGST---FFNVLPSSLTSKH---------YG----ES----EKLVRALFETARA-RAP  149 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~~~~l~~~~---------~~----~~----~~~i~~~~~~a~~-~~p  149 (343)
                      -+.++|+-|+|||.++|++..-+...   .++++...+....         ..    ..    +..-+.+...... ..|
T Consensus        53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~  132 (269)
T COG3267          53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP  132 (269)
T ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            46789999999999999776655422   2333332221100         00    01    1112222222233 345


Q ss_pred             cEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc----cccCcch-------
Q psy7809         150 AVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR----RFEKRIS-------  218 (343)
Q Consensus       150 ~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~----rf~~~i~-------  218 (343)
                      -++++||++.+..         ..+..+.-..+......+.-.+++||-..-...+-....+    |+..+|.       
T Consensus       133 v~l~vdEah~L~~---------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~  203 (269)
T COG3267         133 VVLMVDEAHDLND---------SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA  203 (269)
T ss_pred             eEEeehhHhhhCh---------hHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence            7999999998843         2222222222221111112245666543322222112222    5555443       


Q ss_pred             -HHHHHhhhhcC----CCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809         219 -PIQIIGLCLGE----IRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       219 -r~~il~~~~~~----~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~  266 (343)
                       -...++..++.    ..+.++..+..+...+.|+ |+-|.++|..|...|..
T Consensus       204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~  255 (269)
T COG3267         204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYS  255 (269)
T ss_pred             HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence             23344444443    3445666688899999995 88888888888877763

>PRK04296 thymidine kinase; Provisional

Probab=97.82  E-value=0.00016  Score=61.91  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v  120 (343)
                      -.+++||+|+|||+++..++.++   +..++.+
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~   36 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF   36 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            46899999999999999888765   4455545

>PRK10536 hypothetical protein; Provisional

Probab=97.81  E-value=0.00029  Score=62.52  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.||+|||||+||.+++.+
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999874

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.80  E-value=5e-05  Score=65.45  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC----ceEEEc-CCcccc---------ccccchHHHHHHHHHHHHHcCCcEEEEcc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS----TFFNVL-PSSLTS---------KHYGESEKLVRALFETARARAPAVIFIDE  156 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~----~~~~v~-~~~l~~---------~~~~~~~~~i~~~~~~a~~~~p~il~iDe  156 (343)
                      -++|.||+|+||||++++++..+..    .++.+. +.++..         ..++.....+...+..+....|.++++||
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE   82 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE   82 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence            4789999999999999999887742    222221 111111         01121122355666677777899999999


Q ss_pred             c
Q psy7809         157 V  157 (343)
Q Consensus       157 i  157 (343)
                      +
T Consensus        83 i   83 (198)
T cd01131          83 M   83 (198)
T ss_pred             C
Confidence            8

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.79  E-value=0.00011  Score=64.49  Aligned_cols=41  Identities=27%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---C------CceEEEcCCc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---G------STFFNVLPSS  124 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~------~~~~~v~~~~  124 (343)
                      +++....-+.|+||||+|||+++..+|...   +      ..+++++..+
T Consensus        14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~   63 (226)
T cd01393          14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG   63 (226)
T ss_pred             CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence            345667789999999999999999998653   2      4566666543

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.77  E-value=0.00016  Score=63.91  Aligned_cols=78  Identities=23%  Similarity=0.344  Sum_probs=49.9

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc--------------c-----------------
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK--------------H-----------------  129 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~--------------~-----------------  129 (343)
                      +++..+..++++|+||+|||+++..++.+.   +...++++..+-...              +                 
T Consensus        20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~   99 (234)
T PRK06067         20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE   99 (234)
T ss_pred             CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence            345677889999999999999999997543   556665544221100              0                 


Q ss_pred             --ccchHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809         130 --YGESEKLVRALFETARARAPAVIFIDEVDAFC  161 (343)
Q Consensus       130 --~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~  161 (343)
                        .......+..+........|.+++||++..+.
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~  133 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA  133 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence              01112334444445555678999999998664

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=97.75  E-value=0.0079  Score=52.75  Aligned_cols=116  Identities=11%  Similarity=0.048  Sum_probs=77.6

Q ss_pred             CCceEEEEcCCC-chHHHHHHHHHHHhCC---------ceEEEcCCcccccc-ccchHHHHHHHHHHHH----HcCCcEE
Q psy7809          88 PWRGILLFGPPG-TGKTLLAKAVASQHGS---------TFFNVLPSSLTSKH-YGESEKLVRALFETAR----ARAPAVI  152 (343)
Q Consensus        88 ~~~~vll~Gp~G-tGKT~la~~ia~~l~~---------~~~~v~~~~l~~~~-~~~~~~~i~~~~~~a~----~~~p~il  152 (343)
                      -....||.|..+ +||..++.-++..+..         .++.+.+..-.... ..-....++.+...+.    .....|+
T Consensus        14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi   93 (263)
T PRK06581         14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA   93 (263)
T ss_pred             chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence            345789999997 9999999988877643         23334322110000 0112334555444443    2334699


Q ss_pred             EEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809         153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI  217 (343)
Q Consensus       153 ~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i  217 (343)
                      +|+++|.|         .....+.|++.++.-     +.++++|.+|.+++.+.+.++||+...-
T Consensus        94 II~~ae~m---------t~~AANALLKtLEEP-----P~~t~fILit~~~~~LLpTIrSRCq~i~  144 (263)
T PRK06581         94 IIYSAELM---------NLNAANSCLKILEDA-----PKNSYIFLITSRAASIISTIRSRCFKIN  144 (263)
T ss_pred             EEechHHh---------CHHHHHHHHHhhcCC-----CCCeEEEEEeCChhhCchhHhhceEEEe
Confidence            99999988         446788999999853     5578899999999999999999765543

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.74  E-value=0.00024  Score=61.32  Aligned_cols=74  Identities=23%  Similarity=0.369  Sum_probs=46.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC--------ceEEEcCC-ccccccccc-------------hHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--------TFFNVLPS-SLTSKHYGE-------------SEKLVRALFETA  144 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--------~~~~v~~~-~l~~~~~~~-------------~~~~i~~~~~~a  144 (343)
                      ..+.+.|+.|||||||||+.|-+|+-+..        .+..++.. ++.+-..+.             ..-.-..+....
T Consensus       135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI  214 (308)
T COG3854         135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI  214 (308)
T ss_pred             cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence            45567999999999999999999987632        23333322 222110000             011123345566


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ..+.|.|+++|||...
T Consensus       215 rsm~PEViIvDEIGt~  230 (308)
T COG3854         215 RSMSPEVIIVDEIGTE  230 (308)
T ss_pred             HhcCCcEEEEeccccH
Confidence            7789999999999644

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.74  E-value=0.00018  Score=64.05  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=24.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      ..+..++|.||+|+|||++++.+++.+..
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            34567999999999999999999988754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK13947 shikimate kinase; Provisional

Probab=97.72  E-value=3.7e-05  Score=64.48  Aligned_cols=31  Identities=39%  Similarity=0.482  Sum_probs=28.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +++|.|+||||||++++.+|..++.+|+..+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d   33 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD   33 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence            6899999999999999999999999987654

>PRK03839 putative kinase; Provisional

Probab=97.72  E-value=3.2e-05  Score=65.54  Aligned_cols=31  Identities=32%  Similarity=0.562  Sum_probs=27.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++|.|+||+||||+++.+|+.++.+++.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d   32 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence            3789999999999999999999999887654

>PRK00625 shikimate kinase; Provisional

Probab=97.72  E-value=3.6e-05  Score=64.78  Aligned_cols=31  Identities=39%  Similarity=0.514  Sum_probs=28.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +|+|.|.||+|||++++.+|+.++.+++.++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D   32 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD   32 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence            5899999999999999999999999988775

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.71  E-value=0.00025  Score=68.20  Aligned_cols=37  Identities=30%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      ..|..++|+|++|+||||++..+|..+   +..+..+++.
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D  132 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD  132 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            356789999999999999999999776   4555555554

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.70  E-value=0.00028  Score=60.88  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCchHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ...++|.||.|+||||+++.++.
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            35789999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14974 cell division protein FtsY; Provisional

Probab=97.70  E-value=0.00065  Score=63.13  Aligned_cols=73  Identities=23%  Similarity=0.290  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc-------------------cc-cchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK-------------------HY-GESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~-------------------~~-~~~~~~i~~~~~~a  144 (343)
                      .+.-++|.|++|+||||++..+|..+   +..+..+.+..+...                   .. ......+......+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~  218 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA  218 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence            35678999999999999999988765   344544544322110                   00 01112233344444


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ......+|+||....+
T Consensus       219 ~~~~~DvVLIDTaGr~  234 (336)
T PRK14974        219 KARGIDVVLIDTAGRM  234 (336)
T ss_pred             HhCCCCEEEEECCCcc
Confidence            4455679999999665

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.70  E-value=0.00027  Score=66.33  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +.-.+|+||+|+|||+|++.+++...
T Consensus       169 GQR~lIvgppGvGKTTLaK~Ian~I~  194 (416)
T PRK09376        169 GQRGLIVAPPKAGKTVLLQNIANSIT  194 (416)
T ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Confidence            34588999999999999999998764

>PRK13764 ATPase; Provisional

Probab=97.70  E-value=0.00011  Score=72.93  Aligned_cols=71  Identities=24%  Similarity=0.316  Sum_probs=43.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEE-cCCccc-----cccccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNV-LPSSLT-----SKHYGESEKLVRALFETARARAPAVIFIDEV  157 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v-~~~~l~-----~~~~~~~~~~i~~~~~~a~~~~p~il~iDei  157 (343)
                      ....++|++||+|+||||++++++..+.   ..+..+ ++.++.     ..+. ............+....|+++++||+
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEi  333 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEM  333 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCC
Confidence            3456899999999999999999998774   233233 122221     1111 00011223333345678999999999


Q ss_pred             c
Q psy7809         158 D  158 (343)
Q Consensus       158 d  158 (343)
                      -
T Consensus       334 R  334 (602)
T PRK13764        334 R  334 (602)
T ss_pred             C
Confidence            4

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.68  E-value=4.2e-05  Score=62.77  Aligned_cols=31  Identities=32%  Similarity=0.526  Sum_probs=27.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +++|+|+||+|||++++.+|..++.+++..+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d   31 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD   31 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence            4789999999999999999999998877654

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK06762 hypothetical protein; Provisional

Probab=97.68  E-value=0.00011  Score=61.23  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      .-++|+|+||+||||+|+.++..++..+..++...+.
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r   39 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR   39 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence            4578999999999999999999996566666654443

>TIGR00416 sms DNA repair protein RadA

Probab=97.68  E-value=0.0003  Score=68.22  Aligned_cols=78  Identities=26%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc------ccc--------hHHHHHHHHHHHHHc
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH------YGE--------SEKLVRALFETARAR  147 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~------~~~--------~~~~i~~~~~~a~~~  147 (343)
                      ++.+..-++|+|+||+|||+++..++...   +..+++++..+-....      .+-        ....+..+...+...
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~  169 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE  169 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence            45666779999999999999999997755   3467777654322110      000        011245555666677


Q ss_pred             CCcEEEEcccccccC
Q psy7809         148 APAVIFIDEVDAFCS  162 (343)
Q Consensus       148 ~p~il~iDeid~l~~  162 (343)
                      .|.+|+||.+..+..
T Consensus       170 ~~~~vVIDSIq~l~~  184 (454)
T TIGR00416       170 NPQACVIDSIQTLYS  184 (454)
T ss_pred             CCcEEEEecchhhcc
Confidence            899999999988764

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.67  E-value=0.00021  Score=64.60  Aligned_cols=37  Identities=27%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP  122 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~  122 (343)
                      +.+...++|.|+||+|||+++..++...    +..+.+++.
T Consensus        27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~   67 (271)
T cd01122          27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL   67 (271)
T ss_pred             EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence            4566778999999999999999887653    556666554

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=97.67  E-value=0.00018  Score=64.18  Aligned_cols=74  Identities=28%  Similarity=0.440  Sum_probs=48.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHH------HhCCceEEEcCCccccccc-cchHHHHHHHHHHHHH--------cCCcEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVAS------QHGSTFFNVLPSSLTSKHY-GESEKLVRALFETARA--------RAPAVI  152 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~------~l~~~~~~v~~~~l~~~~~-~~~~~~i~~~~~~a~~--------~~p~il  152 (343)
                      ....+||.||.|.|||.||+.+..      .+..+|++++|..+.+... ...-..++..|.-+..        ....+|
T Consensus       207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml  286 (531)
T COG4650         207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML  286 (531)
T ss_pred             ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence            345699999999999999999863      4567899999998876421 0000112222222211        123699


Q ss_pred             EEccccccc
Q psy7809         153 FIDEVDAFC  161 (343)
Q Consensus       153 ~iDeid~l~  161 (343)
                      |+|||..|.
T Consensus       287 fldeigelg  295 (531)
T COG4650         287 FLDEIGELG  295 (531)
T ss_pred             ehHhhhhcC
Confidence            999998884

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.67  E-value=0.00036  Score=62.72  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      +++.++..++++|+||+|||+++-.++...   +.+..+++.
T Consensus        31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~   72 (259)
T TIGR03878        31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV   72 (259)
T ss_pred             CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            345677789999999999999999987543   456555554

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.67  E-value=7.2e-05  Score=67.70  Aligned_cols=99  Identities=24%  Similarity=0.337  Sum_probs=59.9

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---eEEEc-CCcc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---FFNVL-PSSL  125 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~-~~~l  125 (343)
                      ....+++++.-...+.+.+.+++....          ....++++.|++|+||||+++++...+...   ++.+. ..++
T Consensus        98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~  167 (270)
T PF00437_consen   98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL  167 (270)
T ss_dssp             SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred             cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence            344577888766666666666554321          345689999999999999999999877433   33332 2222


Q ss_pred             cccc-----c--cchHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         126 TSKH-----Y--GESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       126 ~~~~-----~--~~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      .-..     .  .........++..+....|++|+++|+.
T Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR  207 (270)
T PF00437_consen  168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR  207 (270)
T ss_dssp             --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred             eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence            1110     0  1112236677777888899999999994

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.66  E-value=0.00016  Score=67.82  Aligned_cols=71  Identities=23%  Similarity=0.348  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC----ceEEEc-CCccc---------cccccchHHHHHHHHHHHHHcCCcEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS----TFFNVL-PSSLT---------SKHYGESEKLVRALFETARARAPAVIF  153 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~----~~~~v~-~~~l~---------~~~~~~~~~~i~~~~~~a~~~~p~il~  153 (343)
                      +...++|.||+|+||||+.+++...+..    .++.+. +.++.         ....+.....+...+..+....|++|+
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~  200 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL  200 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence            3456899999999999999999887642    233331 11211         111122122356667777778999999


Q ss_pred             Ecccc
Q psy7809         154 IDEVD  158 (343)
Q Consensus       154 iDeid  158 (343)
                      +||+.
T Consensus       201 vgEir  205 (343)
T TIGR01420       201 IGEMR  205 (343)
T ss_pred             EeCCC
Confidence            99993

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.66  E-value=3.9e-05  Score=62.14  Aligned_cols=27  Identities=48%  Similarity=0.883  Sum_probs=23.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ++++||||+||||+|+.++..++..++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~~~~i   28 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLGAVVI   28 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence            689999999999999999999984433

...

>KOG3347|consensus

Probab=97.65  E-value=4.3e-05  Score=61.31  Aligned_cols=33  Identities=36%  Similarity=0.646  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ..++|++|-|||||||++..+|..++.+++.++
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is   39 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS   39 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence            358999999999999999999999999888774

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.65  E-value=0.0006  Score=73.12  Aligned_cols=122  Identities=26%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc------ccc-ccc--hHHHH-HHHHHHHHHcCCcEEEEcc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT------SKH-YGE--SEKLV-RALFETARARAPAVIFIDE  156 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~------~~~-~~~--~~~~i-~~~~~~a~~~~p~il~iDe  156 (343)
                      +..+++||.|.||+|||+|..++|+..|-..+.++.++-.      +.+ +++  .+-.+ ..-|-.|... ...++|||
T Consensus      1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDE 1619 (4600)
T COG5271        1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDE 1619 (4600)
T ss_pred             hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeeh
Confidence            4457899999999999999999999999999999876532      111 111  00011 1122223332 25899999


Q ss_pred             cccccCCCCchhhhHHHHHHHhhhcccCCCC---------CCCCCEEEEEecCCCC------CCCHHHhccccCcch
Q psy7809         157 VDAFCSGSREHEATRRVRCELLSHMDGVGTG---------SGDKGVLVLAATNHPW------DLDEALKRRFEKRIS  218 (343)
Q Consensus       157 id~l~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~~v~vI~ttn~~~------~l~~~l~~rf~~~i~  218 (343)
                      +..-         +..++.-|-.+++.....         ....++.|.++-|..+      .|+..++.||.....
T Consensus      1620 iNLa---------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~ 1687 (4600)
T COG5271        1620 INLA---------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKM 1687 (4600)
T ss_pred             hhhh---------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEe
Confidence            9533         445555565665532211         0123567777776553      489999999877654

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.65  E-value=0.00018  Score=65.96  Aligned_cols=71  Identities=23%  Similarity=0.327  Sum_probs=47.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc-CCccc-------cccccchHHHHHHHHHHHHHcCCcEEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL-PSSLT-------SKHYGESEKLVRALFETARARAPAVIFI  154 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~-~~~l~-------~~~~~~~~~~i~~~~~~a~~~~p~il~i  154 (343)
                      ...++++.||+|+||||++++++..+.     ..++.+. ..++.       ..........+..++..+....|+.|++
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv  210 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV  210 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence            446899999999999999999998762     2333331 11111       0001111114677888888899999999


Q ss_pred             cccc
Q psy7809         155 DEVD  158 (343)
Q Consensus       155 Deid  158 (343)
                      .|+-
T Consensus       211 GEiR  214 (299)
T TIGR02782       211 GEVR  214 (299)
T ss_pred             eccC
Confidence            9993

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK04328 hypothetical protein; Provisional

Probab=97.65  E-value=0.0006  Score=60.95  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=23.9

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +++.++..++++||||+|||+++..++.+
T Consensus        18 GGip~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         18 GGIPERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             CCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34567788999999999999999987654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.64  E-value=0.00025  Score=58.31  Aligned_cols=27  Identities=44%  Similarity=0.491  Sum_probs=23.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++-.++|.||+|||||++.+.+|...
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            566679999999999999999999754

>PRK05973 replicative DNA helicase; Provisional

Probab=97.64  E-value=0.00063  Score=60.02  Aligned_cols=39  Identities=36%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      +++.++..++|.|+||+|||+++-.++...   |.++++++.
T Consensus        59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl  100 (237)
T PRK05973         59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL  100 (237)
T ss_pred             CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            345777789999999999999999887644   666666554

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.64  E-value=0.00022  Score=59.72  Aligned_cols=69  Identities=17%  Similarity=0.271  Sum_probs=44.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc-----------------cchHHHHHHHHHHHHHcCCcEEEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-----------------GESEKLVRALFETARARAPAVIFI  154 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~-----------------~~~~~~i~~~~~~a~~~~p~il~i  154 (343)
                      +|+.|++|+|||++|..++...+.+.+++....-.+...                 .+....+...+...  ..+.+++|
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI   79 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI   79 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence            589999999999999999988777777775443222110                 11122233333221  14679999


Q ss_pred             cccccccC
Q psy7809         155 DEVDAFCS  162 (343)
Q Consensus       155 Deid~l~~  162 (343)
                      |-+..+..
T Consensus        80 Dclt~~~~   87 (169)
T cd00544          80 DCLTLWVT   87 (169)
T ss_pred             EcHhHHHH
Confidence            99988765

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.63  E-value=4.7e-05  Score=63.21  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D   34 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD   34 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence            47899999999999999999999999998875

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.63  E-value=0.00019  Score=67.66  Aligned_cols=69  Identities=23%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc-CCcccc-----------ccccchHHHHHHHHHHHHHcCCcEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL-PSSLTS-----------KHYGESEKLVRALFETARARAPAVI  152 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~-~~~l~~-----------~~~~~~~~~i~~~~~~a~~~~p~il  152 (343)
                      ..++++||+|+||||+++++..++.     .+++.+. +.++.-           ..++.....+...+..+....|++|
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I  229 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII  229 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence            4689999999999999999987762     3344442 112110           1112112235667777778899999


Q ss_pred             EEcccc
Q psy7809         153 FIDEVD  158 (343)
Q Consensus       153 ~iDeid  158 (343)
                      ++.|+.
T Consensus       230 ~vGEiR  235 (372)
T TIGR02525       230 GVGEIR  235 (372)
T ss_pred             eeCCCC
Confidence            999994

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=0.00047  Score=65.29  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=59.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC-------Cce--EEEcCCcccc------------c--cccchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG-------STF--FNVLPSSLTS------------K--HYGESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~--~~v~~~~l~~------------~--~~~~~~~~i~~~~~~a  144 (343)
                      .+..++|+||+|+||||++..+|..+.       ..+  +.+++.....            -  ........+...+...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            356799999999999999999987652       233  3444321110            0  1111222333333333


Q ss_pred             HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809         145 RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD  206 (343)
Q Consensus       145 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~  206 (343)
                        ....+|+||.+.....       ....+..+...++.....  ...++|+.+|.....+.
T Consensus       253 --~~~DlVLIDTaGr~~~-------~~~~l~el~~~l~~~~~~--~e~~LVlsat~~~~~~~  303 (388)
T PRK12723        253 --KDFDLVLVDTIGKSPK-------DFMKLAEMKELLNACGRD--AEFHLAVSSTTKTSDVK  303 (388)
T ss_pred             --CCCCEEEEcCCCCCcc-------CHHHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHH
Confidence              3457999999976632       111233444444433211  23567777766655554

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.62  E-value=0.00044  Score=61.34  Aligned_cols=38  Identities=26%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP  122 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~  122 (343)
                      ++.++.-++|.|+||+|||+++..++...    +.++.++++
T Consensus         9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~   50 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            34666779999999999999999887544    667776654

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK13695 putative NTPase; Provisional

Probab=97.62  E-value=0.0006  Score=57.39  Aligned_cols=23  Identities=43%  Similarity=0.614  Sum_probs=20.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++|.|++|+||||+++.++..+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987765

>KOG1051|consensus

Probab=97.62  E-value=0.00045  Score=71.03  Aligned_cols=144  Identities=22%  Similarity=0.317  Sum_probs=94.2

Q ss_pred             CCccccc-HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcCC
Q psy7809          55 WDDIAGL-DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLPS  123 (343)
Q Consensus        55 ~~~l~G~-~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~~  123 (343)
                      ++-++|. ++-.+.+.+.+...            ..++-+|.|.||+|||.++.-++...          +..++.++..
T Consensus       185 ldPvigr~deeirRvi~iL~Rr------------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g  252 (898)
T KOG1051|consen  185 LDPVIGRHDEEIRRVIEILSRK------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG  252 (898)
T ss_pred             CCCccCCchHHHHHHHHHHhcc------------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence            5667776 55555665555442            22677999999999999999999875          2345666655


Q ss_pred             ccc--cccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         124 SLT--SKHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       124 ~l~--~~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      .+.  .++-++.+..++.+.+.+... ..-||||||++.+.+.+.... .-... .++..+-.      ...+.+||+|.
T Consensus       253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~~d~~-nlLkp~L~------rg~l~~IGatT  324 (898)
T KOG1051|consen  253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-AIDAA-NLLKPLLA------RGGLWCIGATT  324 (898)
T ss_pred             hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-HHHHH-HhhHHHHh------cCCeEEEeccc
Confidence            443  345677788899999888743 456999999999987544311 11222 23333322      22488999887


Q ss_pred             CCC-----CCCHHHhccccCcch
Q psy7809         201 HPW-----DLDEALKRRFEKRIS  218 (343)
Q Consensus       201 ~~~-----~l~~~l~~rf~~~i~  218 (343)
                      ...     .-+|++-+||+....
T Consensus       325 ~e~Y~k~iekdPalErrw~l~~v  347 (898)
T KOG1051|consen  325 LETYRKCIEKDPALERRWQLVLV  347 (898)
T ss_pred             HHHHHHHHhhCcchhhCcceeEe
Confidence            321     246788888876665

>PRK13949 shikimate kinase; Provisional

Probab=97.61  E-value=5.7e-05  Score=63.38  Aligned_cols=32  Identities=41%  Similarity=0.581  Sum_probs=28.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ..++|.|+||+|||++++.+|..++.+++..+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D   33 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD   33 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence            36899999999999999999999998887765

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.61  E-value=6.6e-05  Score=64.02  Aligned_cols=71  Identities=25%  Similarity=0.347  Sum_probs=45.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEc-CCccccc---c---------c-cchHHHHHHHHHHHHHcCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVL-PSSLTSK---H---------Y-GESEKLVRALFETARARAPA  150 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~-~~~l~~~---~---------~-~~~~~~i~~~~~~a~~~~p~  150 (343)
                      .....++|.||+|+||||++++++..+..  ..+.+. ..++...   .         . +.....+..++..+....|+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd  102 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD  102 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence            45678999999999999999999987632  222221 1111100   0         0 01122356677777778899


Q ss_pred             EEEEccc
Q psy7809         151 VIFIDEV  157 (343)
Q Consensus       151 il~iDei  157 (343)
                      +++++|+
T Consensus       103 ~i~igEi  109 (186)
T cd01130         103 RIIVGEV  109 (186)
T ss_pred             EEEEEcc
Confidence            9999999

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14532 adenylate kinase; Provisional

Probab=97.60  E-value=6e-05  Score=64.27  Aligned_cols=30  Identities=33%  Similarity=0.674  Sum_probs=26.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.||||+||||+++.+|+.++..++.+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~   31 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLST   31 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence            489999999999999999999998765543

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.60  E-value=0.00019  Score=66.79  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEE-cCCcccc-----------cc--ccchHHHHHHHHHHHHHcCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNV-LPSSLTS-----------KH--YGESEKLVRALFETARARAPA  150 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v-~~~~l~~-----------~~--~~~~~~~i~~~~~~a~~~~p~  150 (343)
                      ....+++++|++|+||||+++++......  .++.+ +..++.-           ..  .+...-....++..+....|+
T Consensus       158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD  237 (332)
T PRK13900        158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD  237 (332)
T ss_pred             HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence            45578999999999999999999987753  23322 1112211           00  111122467788888899999


Q ss_pred             EEEEcccc
Q psy7809         151 VIFIDEVD  158 (343)
Q Consensus       151 il~iDeid  158 (343)
                      .|++.|+.
T Consensus       238 ~IivGEiR  245 (332)
T PRK13900        238 RIIVGELR  245 (332)
T ss_pred             eEEEEecC
Confidence            99999994

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.59  E-value=0.00066  Score=59.59  Aligned_cols=39  Identities=26%  Similarity=0.261  Sum_probs=29.7

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      +++.++..+++.|+||+|||+++..++...   +...++++.
T Consensus        11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~   52 (224)
T TIGR03880        11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL   52 (224)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            344667789999999999999999887543   556666654

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK13948 shikimate kinase; Provisional

Probab=97.59  E-value=8.6e-05  Score=62.96  Aligned_cols=35  Identities=26%  Similarity=0.272  Sum_probs=32.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++..++|.|.+|+|||++++.+|..++.+|+..+
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D   42 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD   42 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence            56789999999999999999999999999998665

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.58  E-value=0.00036  Score=58.54  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=45.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHH--------------------HHHHHHHHHHHcCCc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEK--------------------LVRALFETARARAPA  150 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~--------------------~i~~~~~~a~~~~p~  150 (343)
                      .+++.|+||+|||++|..++..++.+++++........   +..+                    .+..++... ...+.
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~   78 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR   78 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence            47999999999999999999998877777655432211   1111                    233333221 13356


Q ss_pred             EEEEcccccccC
Q psy7809         151 VIFIDEVDAFCS  162 (343)
Q Consensus       151 il~iDeid~l~~  162 (343)
                      +++||-+..+..
T Consensus        79 ~VlID~Lt~~~~   90 (170)
T PRK05800         79 CVLVDCLTTWVT   90 (170)
T ss_pred             EEEehhHHHHHH
Confidence            899999988754

>PRK06217 hypothetical protein; Validated

Probab=97.58  E-value=7e-05  Score=63.65  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=28.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .|+|.|++|+||||++++++..++.+++.++
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D   33 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTD   33 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence            5899999999999999999999998877665

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.58  E-value=6.8e-05  Score=63.58  Aligned_cols=33  Identities=24%  Similarity=0.497  Sum_probs=26.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      +++.||||+||||+|+.+|..++...+  +..++.
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l   34 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL   34 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence            689999999999999999999986544  444443

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.57  E-value=6.7e-05  Score=61.11  Aligned_cols=28  Identities=36%  Similarity=0.618  Sum_probs=25.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      +-+.|||||||||+++.+|..+|.+++.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vs   30 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVS   30 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCceee
Confidence            5688999999999999999999998876

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.57  E-value=0.00034  Score=63.06  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ..+++|.||+|+||||+.+.++..+.
T Consensus       111 ~~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       111 VLNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence            36899999999999999999998764

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.56  E-value=7.4e-05  Score=63.01  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=27.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      +-++|.|+||+||||+|+.++..++..++.++.
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~   35 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV   35 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence            468999999999999999999998876665443

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.55  E-value=0.00033  Score=67.26  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE----cCCc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV----LPSS  124 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v----~~~~  124 (343)
                      ......|++++......+.+...+..             |..-+|+.||.|+||||...++..+++.+...+    ++-+
T Consensus       231 ~~~~l~l~~Lg~~~~~~~~~~~~~~~-------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE  297 (500)
T COG2804         231 DQVILDLEKLGMSPFQLARLLRLLNR-------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE  297 (500)
T ss_pred             ccccCCHHHhCCCHHHHHHHHHHHhC-------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence            33467788888888888888877753             223467889999999999999999886543322    1112


Q ss_pred             cccccccc------hHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         125 LTSKHYGE------SEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       125 l~~~~~~~------~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      +.-..+..      ..-.+...++....+.|+||.+.||-
T Consensus       298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR  337 (500)
T COG2804         298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR  337 (500)
T ss_pred             eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence            11111111      11125566677777899999999994

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.54  E-value=0.00084  Score=57.69  Aligned_cols=72  Identities=21%  Similarity=0.325  Sum_probs=40.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CCc--eEEEcCCccccc-----------------c-ccchHHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GST--FFNVLPSSLTSK-----------------H-YGESEKLVRALFETAR  145 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~--~~~v~~~~l~~~-----------------~-~~~~~~~i~~~~~~a~  145 (343)
                      |+-++|.||+|+||||.+-.+|..+   +..  ++..+.......                 . .......+...++...
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~   80 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR   80 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence            4568999999999999999888766   333  333332221100                 0 0112233444555555


Q ss_pred             HcCCcEEEEcccccc
Q psy7809         146 ARAPAVIFIDEVDAF  160 (343)
Q Consensus       146 ~~~p~il~iDeid~l  160 (343)
                      ...-.+|+||-....
T Consensus        81 ~~~~D~vlIDT~Gr~   95 (196)
T PF00448_consen   81 KKGYDLVLIDTAGRS   95 (196)
T ss_dssp             HTTSSEEEEEE-SSS
T ss_pred             hcCCCEEEEecCCcc
Confidence            544579999987433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.0016  Score=61.37  Aligned_cols=73  Identities=21%  Similarity=0.144  Sum_probs=44.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------cc---------ccchHHHHHHHHHHHHH-c
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------KH---------YGESEKLVRALFETARA-R  147 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------~~---------~~~~~~~i~~~~~~a~~-~  147 (343)
                      .+..++|.||+|+||||++..+|..+   +..+..+++.....       .+         .......+...+..+.. .
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            35679999999999999999999776   33444444432210       00         01223334445544443 2


Q ss_pred             CCcEEEEcccccc
Q psy7809         148 APAVIFIDEVDAF  160 (343)
Q Consensus       148 ~p~il~iDeid~l  160 (343)
                      ..++||||-....
T Consensus       320 ~~DvVLIDTaGRs  332 (436)
T PRK11889        320 RVDYILIDTAGKN  332 (436)
T ss_pred             CCCEEEEeCcccc
Confidence            3579999988554

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.53  E-value=0.00031  Score=59.60  Aligned_cols=26  Identities=42%  Similarity=0.580  Sum_probs=22.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      -++|.|+||+|||++|+.+|+++...
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~   28 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQE   28 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHh
Confidence            37899999999999999999998543

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.51  E-value=0.0006  Score=62.11  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh----C-CceEEEcCCc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH----G-STFFNVLPSS  124 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~-~~~~~v~~~~  124 (343)
                      .+..++|.||+|+||||++..+|..+    + ..+..+++..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            45678899999999999999998765    3 4555555543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.51  E-value=0.00072  Score=56.29  Aligned_cols=73  Identities=21%  Similarity=0.155  Sum_probs=44.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcccc--------cccc-----chHHHHHHHHHHHHHcCCcE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTS--------KHYG-----ESEKLVRALFETARARAPAV  151 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~--------~~~~-----~~~~~i~~~~~~a~~~~p~i  151 (343)
                      .++..+.|.||+|+|||||.+.++......  -+.++..++..        ..++     .....-+-.+..+....|.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i  103 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL  103 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence            566789999999999999999999765211  12222211110        0010     01122334466677788999


Q ss_pred             EEEccccc
Q psy7809         152 IFIDEVDA  159 (343)
Q Consensus       152 l~iDeid~  159 (343)
                      +++||--.
T Consensus       104 lllDEP~~  111 (163)
T cd03216         104 LILDEPTA  111 (163)
T ss_pred             EEEECCCc
Confidence            99999853

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.51  E-value=0.00027  Score=59.72  Aligned_cols=72  Identities=25%  Similarity=0.189  Sum_probs=43.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcc--cccc--ccchHHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSL--TSKH--YGESEKLVRALFETARARAPAVIFIDEVDA  159 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l--~~~~--~~~~~~~i~~~~~~a~~~~p~il~iDeid~  159 (343)
                      .++..+.|.||.|+|||||++.++..+...  -+.++...+  ....  ... ...-+-.+..+....|.++++||--.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts  100 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA  100 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence            455678899999999999999999765211  111211111  0010  111 11233345556667899999999853

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.50  E-value=9.7e-05  Score=60.50  Aligned_cols=28  Identities=36%  Similarity=0.743  Sum_probs=24.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ++|.|+||+||||+|+.++..++..++.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~   29 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFID   29 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence            6899999999999999999998876553

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK14531 adenylate kinase; Provisional

Probab=97.50  E-value=0.00011  Score=62.48  Aligned_cols=30  Identities=33%  Similarity=0.692  Sum_probs=26.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+++.||||+||||+++.+|..++.+.+.+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~   33 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST   33 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            589999999999999999999998776543

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.50  E-value=0.0001  Score=59.84  Aligned_cols=30  Identities=33%  Similarity=0.593  Sum_probs=27.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +.|.|+||||||++|+.+|..++.+++..+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            679999999999999999999999887765

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.49  E-value=0.00059  Score=55.61  Aligned_cols=71  Identities=21%  Similarity=0.278  Sum_probs=43.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCc---cccccccchHHHHHHHHHHHHHcCCcEEEEccccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSS---LTSKHYGESEKLVRALFETARARAPAVIFIDEVDA  159 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~---l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~  159 (343)
                      .++..+.|.||+|+|||||+++++..+...  -+.++...   +.....+.  ..-+-.+..+....|.++++||-..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G--~~~rv~laral~~~p~illlDEP~~   99 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGG--EKMRLALAKLLLENPNLLLLDEPTN   99 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHH--HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            566778999999999999999999765321  11111110   00001111  1222334556667889999999854

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14530 adenylate kinase; Provisional

Probab=97.49  E-value=0.00012  Score=63.98  Aligned_cols=30  Identities=33%  Similarity=0.594  Sum_probs=26.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.||||+||||+++.+|..++.+++.+
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~   34 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT   34 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            689999999999999999999999776643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.49  E-value=0.0036  Score=66.27  Aligned_cols=31  Identities=29%  Similarity=0.276  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +-++|+||+|.|||+++..++...+ ++..++
T Consensus        33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~   63 (903)
T PRK04841         33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS   63 (903)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence            4589999999999999999987766 544443

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.49  E-value=0.00014  Score=61.19  Aligned_cols=34  Identities=32%  Similarity=0.586  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ...++|.|++|+|||++++.+|..++.+++..+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~   37 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   37 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence            4579999999999999999999999988877653

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.49  E-value=0.0001  Score=63.00  Aligned_cols=29  Identities=41%  Similarity=0.721  Sum_probs=25.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      |+|.||||+|||++++.+|..++..++.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~   30 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHIST   30 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence            78999999999999999999998766554

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.48  E-value=0.00075  Score=62.89  Aligned_cols=41  Identities=20%  Similarity=0.154  Sum_probs=29.3

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS  124 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~  124 (343)
                      +++....-+.|+||||||||.++..+|-..         +..+++++...
T Consensus       121 GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~  170 (344)
T PLN03187        121 GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG  170 (344)
T ss_pred             CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence            345556678899999999999999887422         24566666533

>PRK06547 hypothetical protein; Provisional

Probab=97.48  E-value=0.00013  Score=61.41  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ..+.-|++.|++|||||++++.++..++..++.++
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d   47 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD   47 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence            45567889999999999999999999887766543

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.47  E-value=0.00014  Score=63.97  Aligned_cols=32  Identities=31%  Similarity=0.536  Sum_probs=27.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..++|.||||+||||+|+.+|+.++.+++.+
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~   37 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM   37 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence            34599999999999999999999999776655

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=97.47  E-value=0.00051  Score=67.19  Aligned_cols=94  Identities=19%  Similarity=0.253  Sum_probs=60.5

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEc-CCcccc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVL-PSSLTS  127 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~-~~~l~~  127 (343)
                      ..+++++.-.++..+.+...+..             +..-++++||+|+||||+..++..++.   .+++.+. +.++.-
T Consensus       218 ~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~  284 (486)
T TIGR02533       218 RLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI  284 (486)
T ss_pred             CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence            45677776667777777776642             223478999999999999998877764   2344432 222211


Q ss_pred             cc-----ccc-hHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         128 KH-----YGE-SEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       128 ~~-----~~~-~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      ..     +.. ....+......+....|++|++.|+-
T Consensus       285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR  321 (486)
T TIGR02533       285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR  321 (486)
T ss_pred             CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence            11     111 11235566777778899999999994

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.46  E-value=0.00064  Score=63.03  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=31.3

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS  124 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~  124 (343)
                      +++..+.-++|+||||+|||+++-.+|...         +..+++++..+
T Consensus        97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~  146 (317)
T PRK04301         97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG  146 (317)
T ss_pred             CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence            345666778999999999999999998653         23677776654

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.46  E-value=0.0018  Score=56.51  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia  110 (343)
                      +.++|+||.|+|||++.+.++
T Consensus        30 ~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            668999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG2543|consensus

Probab=97.46  E-value=0.0014  Score=60.70  Aligned_cols=61  Identities=15%  Similarity=0.077  Sum_probs=47.6

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      ..+.+.+.+++.+..++....         ..-|..++|||..|||||.+++.+.+.++.+...++|-+.
T Consensus         6 ~~v~~Re~qi~~L~~Llg~~~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec   66 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGNNS---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC   66 (438)
T ss_pred             cCccchHHHHHHHHHHhCCCC---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence            356777888888887774321         1345678999999999999999999999998888877543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.46  E-value=0.0001  Score=61.25  Aligned_cols=28  Identities=36%  Similarity=0.710  Sum_probs=24.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ++|.||+|+||||+++.++..++..++.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~   28 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIE   28 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence            4789999999999999999999865543

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.46  E-value=0.00022  Score=63.93  Aligned_cols=76  Identities=22%  Similarity=0.381  Sum_probs=51.1

Q ss_pred             cCCCCce-EEEEcCCCchHHHHHHHHHHHhCC----ceEEE-cCCcccc---------ccccchHHHHHHHHHHHHHcCC
Q psy7809          85 ILRPWRG-ILLFGPPGTGKTLLAKAVASQHGS----TFFNV-LPSSLTS---------KHYGESEKLVRALFETARARAP  149 (343)
Q Consensus        85 ~~~~~~~-vll~Gp~GtGKT~la~~ia~~l~~----~~~~v-~~~~l~~---------~~~~~~~~~i~~~~~~a~~~~p  149 (343)
                      ....++| ||+.||+||||||..-++-.+.+.    +.+.+ ++-++..         ..+|.-...+...++.|....|
T Consensus       120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDP  199 (353)
T COG2805         120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDP  199 (353)
T ss_pred             HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC
Confidence            3344455 778899999999999999888764    33333 2222221         2344445557777888888899


Q ss_pred             cEEEEcccccc
Q psy7809         150 AVIFIDEVDAF  160 (343)
Q Consensus       150 ~il~iDeid~l  160 (343)
                      +||++-|+-.+
T Consensus       200 DVIlvGEmRD~  210 (353)
T COG2805         200 DVILVGEMRDL  210 (353)
T ss_pred             CEEEEeccccH
Confidence            99999999433

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.46  E-value=0.00024  Score=56.36  Aligned_cols=24  Identities=38%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +++++||+|+|||+++-.++.++.
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~   25 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELL   25 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHH
Confidence            689999999999999988876653

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.45  E-value=0.0015  Score=54.85  Aligned_cols=33  Identities=36%  Similarity=0.387  Sum_probs=26.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .+++.|+||+|||++++.++..+   +..+..+++.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            36889999999999999998775   5566666654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.44  E-value=0.001  Score=56.10  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=21.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .++.-+.|.||.|+|||||.+++..
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhh
Confidence            5556788999999999999999964

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.44  E-value=0.00095  Score=63.78  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      .++|+||.+|||||+++.+.......+++++..++......-  ......+..+.......+|||||+.+
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v  106 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV  106 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc
Confidence            789999999999999988888776556666665555433221  11122222222224469999999876

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.43  E-value=0.00085  Score=65.89  Aligned_cols=79  Identities=23%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc--------------------------cc--cc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK--------------------------HY--GE  132 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~--------------------------~~--~~  132 (343)
                      +++.++..+|+.||||+|||+++-.++...   +.+.++++..+-...                          +.  ..
T Consensus       258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~  337 (484)
T TIGR02655       258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG  337 (484)
T ss_pred             CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence            456777889999999999999999998754   445555543221100                          00  01


Q ss_pred             hHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809         133 SEKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       133 ~~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                      ....+..+........|.+|+||-+..+..
T Consensus       338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~  367 (484)
T TIGR02655       338 LEDHLQIIKSEIADFKPARIAIDSLSALAR  367 (484)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence            145567777777788899999999987743

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.43  E-value=0.0025  Score=60.63  Aligned_cols=111  Identities=18%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc-------c------ccchHHHHHHHHHHHHHcCCcE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK-------H------YGESEKLVRALFETARARAPAV  151 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~-------~------~~~~~~~i~~~~~~a~~~~p~i  151 (343)
                      +..++|.||+|+||||++..+|..+    +..+..+++......       +      .......+..+...+.....++
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4458899999999999999998754    344544544332211       0      0001111333444444445678


Q ss_pred             EEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC
Q psy7809         152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD  206 (343)
Q Consensus       152 l~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~  206 (343)
                      |+||=......       ....+..|...++..........++|+.++...+.+.
T Consensus       303 VLIDTaGr~~r-------d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~  350 (432)
T PRK12724        303 ILIDTAGYSHR-------NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL  350 (432)
T ss_pred             EEEeCCCCCcc-------CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence            99996532211       1123334444333221111123566666666655443

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.43  E-value=0.00078  Score=62.15  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=30.1

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS  124 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~  124 (343)
                      +++....-+.|+||||+|||.++..+|-..         +...++++..+
T Consensus        91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~  140 (313)
T TIGR02238        91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG  140 (313)
T ss_pred             CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence            445666778899999999999999887422         34567776543

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.42  E-value=0.00087  Score=61.94  Aligned_cols=41  Identities=22%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS  124 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~  124 (343)
                      +++..+.-++|+||||+|||+++-.+|...         +...++++..+
T Consensus        90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~  139 (310)
T TIGR02236        90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN  139 (310)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence            345666678999999999999999998663         23677777654

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK13946 shikimate kinase; Provisional

Probab=97.42  E-value=0.00014  Score=61.90  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +..|+|.|.+|||||++++.+|..++.+|+..+
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D   42 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD   42 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence            457999999999999999999999999987765

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.42  E-value=0.00075  Score=59.49  Aligned_cols=116  Identities=13%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEcCCcccccc--------c------cchHHH-------HHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVLPSSLTSKH--------Y------GESEKL-------VRALFE  142 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~~~~l~~~~--------~------~~~~~~-------i~~~~~  142 (343)
                      ..+-.+++.|++|||||+++..+...+..   +++.+.. .....+        +      .+.+..       +.....
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~   89 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK   89 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence            45568999999999999999999876643   2233322 111111        0      000111       112222


Q ss_pred             HHHH---cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcc
Q psy7809         143 TARA---RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI  217 (343)
Q Consensus       143 ~a~~---~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i  217 (343)
                      ....   ..+.+|+|||+..-       ......+..+...-.       --++.+|..+...-.+++.++.-.+..+
T Consensus        90 k~~~~k~~~~~LiIlDD~~~~-------~~k~~~l~~~~~~gR-------H~~is~i~l~Q~~~~lp~~iR~n~~y~i  153 (241)
T PF04665_consen   90 KSPQKKNNPRFLIILDDLGDK-------KLKSKILRQFFNNGR-------HYNISIIFLSQSYFHLPPNIRSNIDYFI  153 (241)
T ss_pred             hhcccCCCCCeEEEEeCCCCc-------hhhhHHHHHHHhccc-------ccceEEEEEeeecccCCHHHhhcceEEE
Confidence            1111   22579999998321       111223333333211       1267888888888899999877555443

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.42  E-value=0.00017  Score=60.44  Aligned_cols=32  Identities=31%  Similarity=0.494  Sum_probs=28.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ..++|.|++|+|||++++.+|..++.+++..+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D   34 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD   34 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence            36889999999999999999999999887654

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.42  E-value=0.00059  Score=63.00  Aligned_cols=71  Identities=21%  Similarity=0.258  Sum_probs=47.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEc-CCcccccc------ccchHHHHHHHHHHHHHcCCcEEEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNVL-PSSLTSKH------YGESEKLVRALFETARARAPAVIFI  154 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~-~~~l~~~~------~~~~~~~i~~~~~~a~~~~p~il~i  154 (343)
                      ....++++.|++|+||||++++++....     ..++.+. ..++....      ..........++..+....|+.|++
T Consensus       142 ~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~Iiv  221 (323)
T PRK13833        142 DSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIV  221 (323)
T ss_pred             HcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEE
Confidence            3446899999999999999999998762     2333332 22222110      0011123667778888899999999


Q ss_pred             ccc
Q psy7809         155 DEV  157 (343)
Q Consensus       155 Dei  157 (343)
                      .|+
T Consensus       222 GEi  224 (323)
T PRK13833        222 GEV  224 (323)
T ss_pred             eec
Confidence            999

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.42  E-value=0.00091  Score=55.20  Aligned_cols=72  Identities=22%  Similarity=0.296  Sum_probs=44.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcccc-------c-------cccchHHHHHHHHHHHHHcCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTS-------K-------HYGESEKLVRALFETARARAPA  150 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~-------~-------~~~~~~~~i~~~~~~a~~~~p~  150 (343)
                      .++..+.|.||.|+|||+++++++..+...  -+.++...+..       .       ..++  ..-+-.+..+....|.
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G--~~~r~~l~~~l~~~~~  100 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG--QRQRVALARALLLNPD  100 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH--HHHHHHHHHHHhcCCC
Confidence            555678999999999999999999866321  12232221110       0       1111  1222335555666789


Q ss_pred             EEEEcccccc
Q psy7809         151 VIFIDEVDAF  160 (343)
Q Consensus       151 il~iDeid~l  160 (343)
                      ++++||...=
T Consensus       101 i~ilDEp~~~  110 (157)
T cd00267         101 LLLLDEPTSG  110 (157)
T ss_pred             EEEEeCCCcC
Confidence            9999999643

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00767 rho transcription termination factor Rho

Probab=97.41  E-value=0.00045  Score=65.06  Aligned_cols=28  Identities=29%  Similarity=0.390  Sum_probs=24.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ..+..++|.||+|+|||++++.+++.+.
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            4556699999999999999999998754

Members of this family differ in the specificity of RNA binding.

>PRK10436 hypothetical protein; Provisional

Probab=97.41  E-value=0.00053  Score=66.49  Aligned_cols=94  Identities=18%  Similarity=0.309  Sum_probs=61.3

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEc-CCcccc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVL-PSSLTS  127 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~-~~~l~~  127 (343)
                      ..++++++-.+...+.+...+.             .+..-+|++||+|+||||+..++..++..   +++.+. +.++.-
T Consensus       194 ~~~L~~LG~~~~~~~~l~~~~~-------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l  260 (462)
T PRK10436        194 ALDLETLGMTPAQLAQFRQALQ-------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL  260 (462)
T ss_pred             CCCHHHcCcCHHHHHHHHHHHH-------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence            3467777766777777777664             23346889999999999999888777643   333331 222211


Q ss_pred             c-----ccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         128 K-----HYG-ESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       128 ~-----~~~-~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      .     .++ .....+...+..+..+.|++|++.|+-
T Consensus       261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR  297 (462)
T PRK10436        261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR  297 (462)
T ss_pred             CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence            1     111 111236677777788899999999994

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.40  E-value=0.0012  Score=67.51  Aligned_cols=79  Identities=23%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHH---HhCCceEEEcCCcccc----------------ccccchHHHHHHHHHHH
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVAS---QHGSTFFNVLPSSLTS----------------KHYGESEKLVRALFETA  144 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~---~l~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a  144 (343)
                      +++.....++|+||+|||||+|+..++.   ..+....+++..+-..                ......+..+..+-...
T Consensus        55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv  134 (790)
T PRK09519         55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI  134 (790)
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence            3456677899999999999999977654   3355666666543221                00111222333333334


Q ss_pred             HHcCCcEEEEcccccccC
Q psy7809         145 RARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       145 ~~~~p~il~iDeid~l~~  162 (343)
                      ....+.+|+||-+..+.+
T Consensus       135 ~~~~~~LVVIDSI~aL~~  152 (790)
T PRK09519        135 RSGALDIVVIDSVAALVP  152 (790)
T ss_pred             hcCCCeEEEEcchhhhcc
Confidence            455789999999999885

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.40  E-value=0.00067  Score=55.61  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=27.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS  124 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~  124 (343)
                      ++|+|+||+|||++++.++..+   +...+.++...
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~   37 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN   37 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence            6899999999999999999988   65666665433

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PHA02774 E1; Provisional

Probab=97.40  E-value=0.0011  Score=64.93  Aligned_cols=34  Identities=21%  Similarity=0.421  Sum_probs=27.5

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceE-EEcC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFF-NVLP  122 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~-~v~~  122 (343)
                      -+.++|+||||||||++|-++++.++..++ .++.
T Consensus       434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~  468 (613)
T PHA02774        434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS  468 (613)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            358999999999999999999999864443 3543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.40  E-value=0.0017  Score=56.02  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      ++.-++|.||.|+|||++.+.++
T Consensus        28 ~~~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          28 SGRLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             CCeEEEEECCCCCccHHHHHHHH
Confidence            33568999999999999999998

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PF13245 AAA_19: Part of AAA domain

Probab=97.39  E-value=0.00034  Score=50.32  Aligned_cols=23  Identities=48%  Similarity=0.683  Sum_probs=17.1

Q ss_pred             eEEEEcCCCchHH-HHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKT-LLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT-~la~~ia~~l  113 (343)
                      -+++.|||||||| ++++.++...
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566999999999 5566666555

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.37  E-value=0.0048  Score=55.86  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .++..++|.||+|+||||++..+|..+   +..+.-+++.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D  109 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD  109 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            445678889999999999999998766   4455555443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.36  E-value=0.0002  Score=60.87  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=25.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      -++|.||||+||||+++.++..++...+.
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~   33 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS   33 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence            57899999999999999999998865443

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PLN02200 adenylate kinase family protein

Probab=97.36  E-value=0.00024  Score=62.89  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      ..+..++|.|+||+||||+|+.+|..++..  .+++.++.
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll   78 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL   78 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence            345678999999999999999999999865  45555554

>KOG0058|consensus

Probab=97.36  E-value=0.00076  Score=67.17  Aligned_cols=28  Identities=32%  Similarity=0.555  Sum_probs=24.9

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ++|+..+-|.||+|+||||+|..+-+-+
T Consensus       491 i~pGe~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  491 IRPGEVVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5788899999999999999999998755

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.35  E-value=0.00047  Score=61.62  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=27.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL  125 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l  125 (343)
                      |+|+|+||+||||+|+.++..+   +..++.++...+
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l   38 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI   38 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            6899999999999999999887   455666654333

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=97.35  E-value=0.00068  Score=67.73  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEc-CCccc-
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVL-PSSLT-  126 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~-~~~l~-  126 (343)
                      ...+++++-.+...+.+.+.+..             +...+|++||+|+||||+..++...++.   +++.+. +.++. 
T Consensus       292 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~  358 (564)
T TIGR02538       292 QLDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL  358 (564)
T ss_pred             cCCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence            45677877777777777776642             3345789999999999999888877742   333321 11111 


Q ss_pred             ----ccccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         127 ----SKHYG-ESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       127 ----~~~~~-~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                          ...+. .....+...++.+....|++|++.|+.
T Consensus       359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR  395 (564)
T TIGR02538       359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR  395 (564)
T ss_pred             CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence                11111 111236667777888899999999994

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.34  E-value=0.0015  Score=64.08  Aligned_cols=39  Identities=31%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~  122 (343)
                      +++.++..+|+.||||||||+++..++.+    .+.+.++++.
T Consensus        16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~   58 (484)
T TIGR02655        16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF   58 (484)
T ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            45577888999999999999999998543    2556555543

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.34  E-value=0.00035  Score=64.47  Aligned_cols=72  Identities=17%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEc-CCccccc---c---------ccchHHHHHHHHHHHHHcCCcE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVL-PSSLTSK---H---------YGESEKLVRALFETARARAPAV  151 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~-~~~l~~~---~---------~~~~~~~i~~~~~~a~~~~p~i  151 (343)
                      ....++++.||+|+||||++++++..+..  ..+.+. ..++...   .         .+...-....++..+....|.+
T Consensus       142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~  221 (308)
T TIGR02788       142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR  221 (308)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence            56679999999999999999999977632  222221 1111100   0         0111223566777788889999


Q ss_pred             EEEcccc
Q psy7809         152 IFIDEVD  158 (343)
Q Consensus       152 l~iDeid  158 (343)
                      |++||+-
T Consensus       222 ii~gE~r  228 (308)
T TIGR02788       222 IILGELR  228 (308)
T ss_pred             EEEeccC
Confidence            9999994

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14528 adenylate kinase; Provisional

Probab=97.34  E-value=0.00022  Score=60.75  Aligned_cols=31  Identities=29%  Similarity=0.573  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+++.||||+||||+++.++..++.+.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~   32 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST   32 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence            3589999999999999999999998776543

>PTZ00035 Rad51 protein; Provisional

Probab=97.34  E-value=0.0012  Score=61.50  Aligned_cols=29  Identities=31%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +++....-+.|+||+|+|||+++..++..
T Consensus       113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~  141 (337)
T PTZ00035        113 GGIETGSITELFGEFRTGKTQLCHTLCVT  141 (337)
T ss_pred             CCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence            34555666889999999999999998753

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.34  E-value=0.0018  Score=64.03  Aligned_cols=78  Identities=22%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc--------------------------c-----
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK--------------------------H-----  129 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~--------------------------~-----  129 (343)
                      ++.++..+||+|+||+|||+++..++.+.    +.+.++++..+-...                          +     
T Consensus        27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~  106 (509)
T PRK09302         27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE  106 (509)
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence            34667789999999999999999886432    445555543221100                          0     


Q ss_pred             ---c--cchHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809         130 ---Y--GESEKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       130 ---~--~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                         .  ......+..+........|..++||-+..+..
T Consensus       107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~  144 (509)
T PRK09302        107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS  144 (509)
T ss_pred             ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence               0  01123344455555667889999999987654

>PRK06696 uridine kinase; Validated

Probab=97.34  E-value=0.00059  Score=59.94  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT  126 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~  126 (343)
                      .+.-|.|.|++|+||||+|+.++..+   +.+++.++..++.
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            45568899999999999999999998   6667776665554

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.34  E-value=0.0046  Score=57.23  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      .+.-++|.||+|+||||++..+|..+   +..+..+++
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~  150 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG  150 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence            45678899999999999999999876   344444443

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=97.33  E-value=0.00075  Score=63.80  Aligned_cols=29  Identities=34%  Similarity=0.493  Sum_probs=24.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      ..+..+++.||.|||||++.+++...+..
T Consensus        20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen   20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            45578999999999999999999877743

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=97.32  E-value=0.00088  Score=61.95  Aligned_cols=72  Identities=26%  Similarity=0.380  Sum_probs=47.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEE-cCCccccc------cccchHHHHHHHHHHHHHcCCcEEEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNV-LPSSLTSK------HYGESEKLVRALFETARARAPAVIFI  154 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v-~~~~l~~~------~~~~~~~~i~~~~~~a~~~~p~il~i  154 (343)
                      ....++++.|++|+||||++++++...     ...++.+ +..++...      +.......+..++..+....|+.|++
T Consensus       146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~Iiv  225 (319)
T PRK13894        146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILV  225 (319)
T ss_pred             HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence            345789999999999999999999764     1223322 12222110      00011223677888888899999999


Q ss_pred             cccc
Q psy7809         155 DEVD  158 (343)
Q Consensus       155 Deid  158 (343)
                      .|+-
T Consensus       226 GEiR  229 (319)
T PRK13894        226 GEVR  229 (319)
T ss_pred             eccC
Confidence            9993

>PRK02496 adk adenylate kinase; Provisional

Probab=97.31  E-value=0.00023  Score=60.44  Aligned_cols=30  Identities=27%  Similarity=0.519  Sum_probs=26.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.||||+|||++++.++..++.+.+.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~   32 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST   32 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence            478999999999999999999998766654

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.31  E-value=0.0024  Score=56.15  Aligned_cols=38  Identities=29%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      +++.++..+++.|+||+|||+++..++.+.   +...++++
T Consensus        15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is   55 (229)
T TIGR03881        15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT   55 (229)
T ss_pred             CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence            345677889999999999999999876432   44444444

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.31  E-value=0.00029  Score=65.69  Aligned_cols=73  Identities=22%  Similarity=0.307  Sum_probs=48.4

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEc-CCccccc--------c----ccchHHHHHHHHHHHHHcCCc
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVL-PSSLTSK--------H----YGESEKLVRALFETARARAPA  150 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~-~~~l~~~--------~----~~~~~~~i~~~~~~a~~~~p~  150 (343)
                      +....++++.||+|+||||++++++..+..  .++.+. ..++.-.        +    .+...-....++..+....|+
T Consensus       159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD  238 (344)
T PRK13851        159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD  238 (344)
T ss_pred             HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence            356678999999999999999999987643  233221 1111100        0    011122356778888888999


Q ss_pred             EEEEcccc
Q psy7809         151 VIFIDEVD  158 (343)
Q Consensus       151 il~iDeid  158 (343)
                      .|++.|+-
T Consensus       239 ~IivGEiR  246 (344)
T PRK13851        239 RILLGEMR  246 (344)
T ss_pred             eEEEEeeC
Confidence            99999993

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.31  E-value=0.0041  Score=52.91  Aligned_cols=19  Identities=26%  Similarity=0.534  Sum_probs=18.0

Q ss_pred             EEEEcCCCchHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia  110 (343)
                      ++|+||.|+|||++.|.++
T Consensus         2 ~~ltG~N~~GKst~l~~i~   20 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVG   20 (185)
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6899999999999999998

>TIGR01351 adk adenylate kinases

Probab=97.30  E-value=0.00022  Score=62.01  Aligned_cols=29  Identities=38%  Similarity=0.721  Sum_probs=25.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ++|.||||+||||+|+.+|..++...+.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~   30 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST   30 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence            78999999999999999999998766554

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK04040 adenylate kinase; Provisional

Probab=97.30  E-value=0.00028  Score=60.21  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +..++|+|+|||||||+++.++..+.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            35689999999999999999999983

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.30  E-value=0.00054  Score=58.89  Aligned_cols=106  Identities=16%  Similarity=0.216  Sum_probs=55.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE  166 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~  166 (343)
                      .....++|.|+-|+|||+.++.++.+..     .+.  +...  . .......+-    ..  -|+.|||++.+...  +
T Consensus        50 k~d~~lvl~G~QG~GKStf~~~L~~~~~-----~d~--~~~~--~-~kd~~~~l~----~~--~iveldEl~~~~k~--~  111 (198)
T PF05272_consen   50 KNDTVLVLVGKQGIGKSTFFRKLGPEYF-----SDS--INDF--D-DKDFLEQLQ----GK--WIVELDELDGLSKK--D  111 (198)
T ss_pred             cCceeeeEecCCcccHHHHHHHHhHHhc-----cCc--cccC--C-CcHHHHHHH----Hh--HheeHHHHhhcchh--h
Confidence            3345688999999999999999976621     111  1110  0 011111111    11  48999999887421  1


Q ss_pred             hhhhHHHHHHHhhhcccC---CC---CCCCCCEEEEEecCCCCCC-CHHHhccc
Q psy7809         167 HEATRRVRCELLSHMDGV---GT---GSGDKGVLVLAATNHPWDL-DEALKRRF  213 (343)
Q Consensus       167 ~~~~~~~~~~ll~~l~~~---~~---~~~~~~v~vI~ttn~~~~l-~~~l~~rf  213 (343)
                         ...+.+-+-...+.+   +.   ...+...++|||||..+-| |+.--|||
T Consensus       112 ---~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf  162 (198)
T PF05272_consen  112 ---VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF  162 (198)
T ss_pred             ---HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE
Confidence               112222222222211   11   1124467899999997754 33444454

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.29  E-value=0.0049  Score=55.38  Aligned_cols=101  Identities=23%  Similarity=0.307  Sum_probs=59.0

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc--------------------------------cc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT--------------------------------SK  128 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~--------------------------------~~  128 (343)
                      +++.....+|++|+||||||+++..++...   |.+.++++..+-.                                ..
T Consensus        18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~   97 (260)
T COG0467          18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKG   97 (260)
T ss_pred             CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccccccc
Confidence            445777889999999999999999997554   4555555432110                                00


Q ss_pred             c----cc---chHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC
Q psy7809         129 H----YG---ESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV  184 (343)
Q Consensus       129 ~----~~---~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~  184 (343)
                      .    .+   ........+...+....+.++++|.+-.+.-..............+...+...
T Consensus        98 ~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~~l~~~~~~~  160 (260)
T COG0467          98 LVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKKL  160 (260)
T ss_pred             cccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcCchHHHHHHHHHHHHHHHhC
Confidence            0    01   11223333444444455789999999865433233333356666666666543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.29  E-value=0.00041  Score=48.88  Aligned_cols=22  Identities=41%  Similarity=0.593  Sum_probs=20.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.+.|++|+|||+++++++..+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.28  E-value=0.00022  Score=56.39  Aligned_cols=22  Identities=45%  Similarity=0.647  Sum_probs=20.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      |+|.|+||+||||+|+.++.++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999987

...

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.28  E-value=0.00027  Score=61.70  Aligned_cols=30  Identities=37%  Similarity=0.671  Sum_probs=26.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .|++.||||+||||+++.+|..++...+.+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~   31 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST   31 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence            378999999999999999999998766553

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0025  Score=59.72  Aligned_cols=97  Identities=23%  Similarity=0.299  Sum_probs=66.8

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccc------cc--------cchHHHHHHHHHHHHHcCC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSK------HY--------GESEKLVRALFETARARAP  149 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~------~~--------~~~~~~i~~~~~~a~~~~p  149 (343)
                      +-++.-+||-|.||.|||||.-.++..+.  ..+.|++..+-...      ..        --.+..+..++..+....|
T Consensus        90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p  169 (456)
T COG1066          90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP  169 (456)
T ss_pred             cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence            45556688889999999999998887763  36888876543321      11        1134567888888889999


Q ss_pred             cEEEEcccccccCCC-----CchhhhHHHHHHHhhhcc
Q psy7809         150 AVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMD  182 (343)
Q Consensus       150 ~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~  182 (343)
                      .+++||-|..+....     ..-...+.....|++.-.
T Consensus       170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK  207 (456)
T COG1066         170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK  207 (456)
T ss_pred             CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999987632     222334555666665543

>PRK14527 adenylate kinase; Provisional

Probab=97.27  E-value=0.00026  Score=60.59  Aligned_cols=33  Identities=27%  Similarity=0.517  Sum_probs=27.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ..+.-+++.||||+||||+++.+|..++...+.
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is   36 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS   36 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence            345679999999999999999999999865443

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.26  E-value=0.00099  Score=62.62  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=44.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC------CceEEE-cCCcccccc------------ccchHHHHHHHHHHHHHcC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG------STFFNV-LPSSLTSKH------------YGESEKLVRALFETARARA  148 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~------~~~~~v-~~~~l~~~~------------~~~~~~~i~~~~~~a~~~~  148 (343)
                      +...++++||+|+||||++++++..+.      ..++.+ ++.++....            ++.....+...+..+....
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~  212 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK  212 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence            445689999999999999999998762      223322 111211100            1111123455566677789


Q ss_pred             CcEEEEcccc
Q psy7809         149 PAVIFIDEVD  158 (343)
Q Consensus       149 p~il~iDeid  158 (343)
                      |.++++.|+.
T Consensus       213 Pd~i~vGEiR  222 (358)
T TIGR02524       213 PHAILVGEAR  222 (358)
T ss_pred             CCEEeeeeeC
Confidence            9999999984

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=97.25  E-value=0.00029  Score=69.00  Aligned_cols=102  Identities=25%  Similarity=0.352  Sum_probs=63.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh--CCceEEEcCCcccccc-----ccchHHH--------HHHHHHHHHHcCCcEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH--GSTFFNVLPSSLTSKH-----YGESEKL--------VRALFETARARAPAVIF  153 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l--~~~~~~v~~~~l~~~~-----~~~~~~~--------i~~~~~~a~~~~p~il~  153 (343)
                      ...+++.|.+||||-.++|++=...  ..+|+.++|.-+....     +|.....        ....+..+.   ...||
T Consensus       336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlF  412 (606)
T COG3284         336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLF  412 (606)
T ss_pred             CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccH
Confidence            3479999999999999999995544  5689999996654321     1111111        111222221   24899


Q ss_pred             EcccccccCCCCchhhhHHHHHHHhhhcccC-----CCCCCCCCEEEEEecCCC
Q psy7809         154 IDEVDAFCSGSREHEATRRVRCELLSHMDGV-----GTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       154 iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~~~v~vI~ttn~~  202 (343)
                      +|||..|         .-.++..|+..+..-     ......-.|-||++|+.+
T Consensus       413 ldeIgd~---------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d  457 (606)
T COG3284         413 LDEIGDM---------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD  457 (606)
T ss_pred             HHHhhhc---------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC
Confidence            9999766         456777788777631     111112257788888864

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=97.23  E-value=0.0015  Score=60.94  Aligned_cols=41  Identities=17%  Similarity=0.155  Sum_probs=29.4

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS  124 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~  124 (343)
                      +++....-+.++|+||+|||.++..+|...         +...++++..+
T Consensus       118 GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~  167 (342)
T PLN03186        118 GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG  167 (342)
T ss_pred             CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence            345566678899999999999999887432         12567776544

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.23  E-value=0.0014  Score=61.39  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .+...+|.||+|||||+|++.+++.+.
T Consensus       132 kGQR~LIvG~pGtGKTTLl~~la~~i~  158 (380)
T PRK12608        132 KGQRGLIVAPPRAGKTVLLQQIAAAVA  158 (380)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            334689999999999999999998763

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.00024  Score=58.60  Aligned_cols=30  Identities=30%  Similarity=0.465  Sum_probs=26.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++++|.||+||||+++.++ +++...+.++
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~   31 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN   31 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence            47899999999999999999 8898877664

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.22  E-value=0.00046  Score=55.21  Aligned_cols=30  Identities=30%  Similarity=0.299  Sum_probs=26.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .+...++|.|+.|+|||++++.+++.++..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            455678999999999999999999999854

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.22  E-value=0.00036  Score=58.99  Aligned_cols=26  Identities=50%  Similarity=0.878  Sum_probs=22.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .++|.||||+||||+|+.+|+.++.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~   27 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLP   27 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            47899999999999999999995543

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.21  E-value=0.0048  Score=53.14  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia  110 (343)
                      +.++|.||.|+|||++.+.++
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            459999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.21  E-value=0.0013  Score=56.65  Aligned_cols=69  Identities=23%  Similarity=0.349  Sum_probs=43.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCccccccccc------------------hHHHHHHHHHHHHHc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSSLTSKHYGE------------------SEKLVRALFETARAR  147 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~l~~~~~~~------------------~~~~i~~~~~~a~~~  147 (343)
                      ..|.-+++.|+||+|||+++..+...+ +..++.++..++......-                  .......++..+...
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~   92 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN   92 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            456778999999999999999999988 7788888887766443210                  112344556666666


Q ss_pred             CCcEEEEcc
Q psy7809         148 APAVIFIDE  156 (343)
Q Consensus       148 ~p~il~iDe  156 (343)
                      ...|++ |.
T Consensus        93 ~~nii~-E~  100 (199)
T PF06414_consen   93 RYNIIF-EG  100 (199)
T ss_dssp             T--EEE-E-
T ss_pred             CCCEEE-ec
Confidence            665654 44

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.20  E-value=0.0021  Score=54.27  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=23.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++...
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            566779999999999999999999764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=97.20  E-value=0.0012  Score=68.16  Aligned_cols=98  Identities=19%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc----cchHHHHHHHHHH-HH----HcCCcEEEEccc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY----GESEKLVRALFET-AR----ARAPAVIFIDEV  157 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~----~~~~~~i~~~~~~-a~----~~~p~il~iDei  157 (343)
                      .-++|.|++|||||++++++...+   +..++.+.+........    +.....+..+... ..    .....+|++||+
T Consensus       369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa  448 (744)
T TIGR02768       369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA  448 (744)
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence            457899999999999999997544   55666554433221111    1111122332111 10    123469999999


Q ss_pred             ccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         158 DAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      -.+         ....+..|+......     ..++++||=...
T Consensus       449 sMv---------~~~~~~~Ll~~~~~~-----~~kliLVGD~~Q  478 (744)
T TIGR02768       449 GMV---------GSRQMARVLKEAEEA-----GAKVVLVGDPEQ  478 (744)
T ss_pred             ccC---------CHHHHHHHHHHHHhc-----CCEEEEECChHH
Confidence            655         223344555533221     235777774443

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.20  E-value=0.0014  Score=67.43  Aligned_cols=101  Identities=20%  Similarity=0.306  Sum_probs=56.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---C--CceEEEcCCccccc----cccchHHHHHHHHHHH----------HHcCCc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---G--STFFNVLPSSLTSK----HYGESEKLVRALFETA----------RARAPA  150 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~--~~~~~v~~~~l~~~----~~~~~~~~i~~~~~~a----------~~~~p~  150 (343)
                      +.++|.|+||||||++++++...+   +  ..++-+.+..-...    ..|.....++.++...          ......
T Consensus       339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~  418 (720)
T TIGR01448       339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD  418 (720)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence            468899999999999999997654   3  33333332211111    1111112233333211          012346


Q ss_pred             EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809         151 VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL  205 (343)
Q Consensus       151 il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l  205 (343)
                      +|++||+..+         ...++..|+..+.   .   ..+++++|=.+....+
T Consensus       419 llIvDEaSMv---------d~~~~~~Ll~~~~---~---~~rlilvGD~~QLpsV  458 (720)
T TIGR01448       419 LLIVDESSMM---------DTWLALSLLAALP---D---HARLLLVGDTDQLPSV  458 (720)
T ss_pred             EEEEeccccC---------CHHHHHHHHHhCC---C---CCEEEEECccccccCC
Confidence            9999999655         3345566666442   1   3367888866655444

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.20  E-value=0.00082  Score=60.66  Aligned_cols=68  Identities=26%  Similarity=0.348  Sum_probs=35.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc---cc-ccchHHHHHH----HHHHHHHcCCcEEEEcccccc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS---KH-YGESEKLVRA----LFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~---~~-~~~~~~~i~~----~~~~a~~~~p~il~iDeid~l  160 (343)
                      |+|+|-||+|||++|+.|+..+   +..+..++-..+..   .| ....++.++.    .+..+... ..|+++|+..++
T Consensus         4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi   82 (270)
T PF08433_consen    4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI   82 (270)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence            7899999999999999998765   45666666443331   11 1222333333    33333332 379999999776

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.20  E-value=0.0022  Score=53.73  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=24.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||+|.+.++..+
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            566779999999999999999999765

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.19  E-value=0.0012  Score=56.40  Aligned_cols=77  Identities=21%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC-------------CceEEEcCCccc-----------cccc--------c---
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG-------------STFFNVLPSSLT-----------SKHY--------G---  131 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~-------------~~~~~v~~~~l~-----------~~~~--------~---  131 (343)
                      ....-++|+||+|+|||+++..++..+-             ..+.+++...-.           ..+.        .   
T Consensus        30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~  109 (193)
T PF13481_consen   30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSN  109 (193)
T ss_dssp             -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccc
Confidence            4455689999999999999999876541             245566442211           0000        0   


Q ss_pred             --------------chHHHHHHHHHHHHH-cCCcEEEEcccccccCC
Q psy7809         132 --------------ESEKLVRALFETARA-RAPAVIFIDEVDAFCSG  163 (343)
Q Consensus       132 --------------~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~  163 (343)
                                    .....+..+.+.+.. ..+.+|+||.+..+...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~  156 (193)
T PF13481_consen  110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG  156 (193)
T ss_dssp             E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred             cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence                          012234455555555 56899999999999875

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.18  E-value=0.00029  Score=57.83  Aligned_cols=31  Identities=35%  Similarity=0.606  Sum_probs=24.6

Q ss_pred             EEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          94 LFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        94 l~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      |.||||+|||++|+.+|.+++...  +++.++.
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~ll   31 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLL   31 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcce--echHHHH
Confidence            579999999999999999998654  4444443

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.18  E-value=0.0006  Score=62.96  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +.+...++|.|++|||||++++.+|..++.+|+.++
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D  165 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN  165 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence            467778999999999999999999999999998554

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.18  E-value=0.0077  Score=56.58  Aligned_cols=60  Identities=27%  Similarity=0.235  Sum_probs=38.6

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      .+.+...+.+.+......+..+.  ..++..++|.||+|+||||++..+|..+   +..+..+++
T Consensus       180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta  242 (407)
T PRK12726        180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT  242 (407)
T ss_pred             HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            45566666666654333222111  2456778999999999999999998765   444444444

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.17  E-value=0.0011  Score=57.08  Aligned_cols=23  Identities=48%  Similarity=0.653  Sum_probs=18.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      -+++.||.|||||+||-+.|.++
T Consensus        21 ~v~~~G~AGTGKT~LA~a~Al~~   43 (205)
T PF02562_consen   21 LVIVNGPAGTGKTFLALAAALEL   43 (205)
T ss_dssp             EEEEE--TTSSTTHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            58899999999999999998665

; GO: 0005524 ATP binding; PDB: 3B85_A.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.17  E-value=0.0032  Score=60.26  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc---------------ccc-----cchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS---------------KHY-----GESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~---------------~~~-----~~~~~~i~~~~~~a  144 (343)
                      ++..++|+|++|+||||++..+|..+   |..+..+++.....               .+.     ..........+..+
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998776   55666665533210               000     01122233445555


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ......+||||=...+
T Consensus       179 ~~~~~DvViIDTaGr~  194 (429)
T TIGR01425       179 KKENFDIIIVDTSGRH  194 (429)
T ss_pred             HhCCCCEEEEECCCCC
Confidence            5555689999988544

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF13479 AAA_24: AAA domain

Probab=97.17  E-value=0.00093  Score=58.24  Aligned_cols=67  Identities=22%  Similarity=0.222  Sum_probs=38.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc--c--c----ccc-cchHHHHHHHHHHH--HHcCCcEEEEccc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL--T--S----KHY-GESEKLVRALFETA--RARAPAVIFIDEV  157 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l--~--~----~~~-~~~~~~i~~~~~~a--~~~~p~il~iDei  157 (343)
                      +..++|||+||+|||++|..+    + ..+.+++..=  .  .    ..+ -.+-..+.+.+..+  .......|+||.+
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi   77 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI   77 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence            457899999999999999988    2 2233332111  0  0    000 01222344444333  2234569999999


Q ss_pred             ccc
Q psy7809         158 DAF  160 (343)
Q Consensus       158 d~l  160 (343)
                      +.+
T Consensus        78 s~~   80 (213)
T PF13479_consen   78 SWL   80 (213)
T ss_pred             HHH
Confidence            876

>PLN02674 adenylate kinase

Probab=97.16  E-value=0.00087  Score=59.41  Aligned_cols=37  Identities=22%  Similarity=0.462  Sum_probs=29.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      +...++|.||||+||+|+++.+|..++...  +++.++.
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll   66 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML   66 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence            346799999999999999999999998654  4444444

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=97.16  E-value=0.0015  Score=60.43  Aligned_cols=60  Identities=20%  Similarity=0.400  Sum_probs=44.8

Q ss_pred             CC-cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-ceEEE
Q psy7809          55 WD-DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-TFFNV  120 (343)
Q Consensus        55 ~~-~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-~~~~v  120 (343)
                      |+ ++.|+++.++++.+++....      .++...-+-++|.||+|+|||++++.+.+-+.. +++.+
T Consensus        59 f~~~~~G~~~~i~~lV~~fk~AA------~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l  120 (358)
T PF08298_consen   59 FEDEFYGMEETIERLVNYFKSAA------QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL  120 (358)
T ss_pred             ccccccCcHHHHHHHHHHHHHHH------hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence            44 89999999999999886432      122234456889999999999999999887753 44444

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.15  E-value=0.0018  Score=54.84  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=23.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++...
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            566678999999999999999999765

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.14  E-value=0.004  Score=59.87  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=47.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc----------------c----ccchHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK----------------H----YGESEKLVRALFE  142 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~----------------~----~~~~~~~i~~~~~  142 (343)
                      .+|..++++|++|+||||++..+|..+    +..+..+++......                +    .............
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~  177 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE  177 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence            346778999999999999888887654    555666655422210                0    0112333444555


Q ss_pred             HHHHcCCcEEEEcccccc
Q psy7809         143 TARARAPAVIFIDEVDAF  160 (343)
Q Consensus       143 ~a~~~~p~il~iDeid~l  160 (343)
                      .+......+|+||-...+
T Consensus       178 ~a~~~~~DvVIIDTaGrl  195 (433)
T PRK10867        178 EAKENGYDVVIVDTAGRL  195 (433)
T ss_pred             HHHhcCCCEEEEeCCCCc
Confidence            566666789999988655

>PRK04182 cytidylate kinase; Provisional

Probab=97.14  E-value=0.00044  Score=58.20  Aligned_cols=29  Identities=38%  Similarity=0.625  Sum_probs=26.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .|+|.|++|||||++++.+|..++.+++.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            47899999999999999999999987665

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.13  E-value=0.0029  Score=62.56  Aligned_cols=28  Identities=39%  Similarity=0.606  Sum_probs=24.8

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.++..+++.||+|||||+|.|++|...
T Consensus       416 v~~G~~llI~G~SG~GKTsLlRaiaGLW  443 (604)
T COG4178         416 VRPGERLLITGESGAGKTSLLRALAGLW  443 (604)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            4677889999999999999999999653

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.13  E-value=0.0031  Score=56.85  Aligned_cols=91  Identities=16%  Similarity=0.227  Sum_probs=55.9

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHH
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKL  136 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~  136 (343)
                      +++--+++.+.+.+....-          ..+..++||.|..|+||++++|..|...+..++.+....-  -...+....
T Consensus         9 ~lVlf~~ai~hi~ri~RvL----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~--y~~~~f~~d   76 (268)
T PF12780_consen    9 NLVLFDEAIEHIARISRVL----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKG--YSIKDFKED   76 (268)
T ss_dssp             -----HHHHHHHHHHHHHH----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTT--THHHHHHHH
T ss_pred             ceeeHHHHHHHHHHHHHHH----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCC--cCHHHHHHH
Confidence            4555566666655544321          1455789999999999999999999999999888865431  112223445


Q ss_pred             HHHHHHHHH-HcCCcEEEEccccc
Q psy7809         137 VRALFETAR-ARAPAVIFIDEVDA  159 (343)
Q Consensus       137 i~~~~~~a~-~~~p~il~iDeid~  159 (343)
                      ++.++..|- ...|.+++|+|-+-
T Consensus        77 Lk~~~~~ag~~~~~~vfll~d~qi  100 (268)
T PF12780_consen   77 LKKALQKAGIKGKPTVFLLTDSQI  100 (268)
T ss_dssp             HHHHHHHHHCS-S-EEEEEECCCS
T ss_pred             HHHHHHHHhccCCCeEEEecCccc
Confidence            666666554 44578888887643

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=97.13  E-value=0.0016  Score=60.25  Aligned_cols=41  Identities=24%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh------C---CceEEEcCCc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH------G---STFFNVLPSS  124 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l------~---~~~~~v~~~~  124 (343)
                      +++.+..-+.++||||+|||+++..+|...      +   ...++++..+
T Consensus        91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~  140 (316)
T TIGR02239        91 GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG  140 (316)
T ss_pred             CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence            345666778899999999999999987522      1   2456666544

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.12  E-value=0.0074  Score=52.18  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      +.-++|.||.|+|||++.+.++.
T Consensus        29 ~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          29 SRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999873

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK01184 hypothetical protein; Provisional

Probab=97.12  E-value=0.00046  Score=58.59  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=24.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      -++|+|+||+||||+++ ++.+++.+++..
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~   31 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM   31 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence            47899999999999998 788888877654

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.11  E-value=0.0037  Score=51.96  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ++..++.||.|+|||++.++++-.
T Consensus        21 ~~~~~i~G~NgsGKS~~l~~i~~~   44 (162)
T cd03227          21 GSLTIITGPNGSGKSTILDAIGLA   44 (162)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998643

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.11  E-value=0.0039  Score=60.01  Aligned_cols=36  Identities=22%  Similarity=0.245  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSS  124 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~  124 (343)
                      +..++|.||+|+||||++..+|..+     +..+..+++..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~  261 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT  261 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence            4578899999999999999887654     24555555544

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=97.10  E-value=0.0018  Score=68.11  Aligned_cols=102  Identities=18%  Similarity=0.204  Sum_probs=58.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCcccccc----ccchHHHHHHHHHHHH-----HcCCcEEEEccc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTSKH----YGESEKLVRALFETAR-----ARAPAVIFIDEV  157 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l~~~~----~~~~~~~i~~~~~~a~-----~~~p~il~iDei  157 (343)
                      .-++|.|++||||||+.+++...   .|..++-+-+.......    .|.....+..++....     .....||||||+
T Consensus       363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEA  442 (988)
T PRK13889        363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEA  442 (988)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECc
Confidence            35679999999999998877543   36666665544332221    1222333444432110     123459999999


Q ss_pred             ccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809         158 DAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL  205 (343)
Q Consensus       158 d~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l  205 (343)
                      -.+         ....+..|+......     ..++++||=......+
T Consensus       443 SMv---------~~~~m~~LL~~a~~~-----garvVLVGD~~QLpsV  476 (988)
T PRK13889        443 GMV---------GTRQLERVLSHAADA-----GAKVVLVGDPQQLQAI  476 (988)
T ss_pred             ccC---------CHHHHHHHHHhhhhC-----CCEEEEECCHHHcCCC
Confidence            655         334555666544322     2368888866655444

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.10  E-value=0.0039  Score=52.36  Aligned_cols=27  Identities=30%  Similarity=0.613  Sum_probs=23.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||+|++.++...
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            455678999999999999999999765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=97.10  E-value=0.0024  Score=57.27  Aligned_cols=119  Identities=17%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCcccc-c--------c----------------
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTS-K--------H----------------  129 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~-~--------~----------------  129 (343)
                      +++....-.=|+||||+|||.++-.+|-..         +..+++++...-.. .        +                
T Consensus        33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~  112 (256)
T PF08423_consen   33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV  112 (256)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred             CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence            334444456699999999999999887543         33477776543211 0        0                


Q ss_pred             --ccchHHHHHHHHHHHHHcCCcEEEEcccccccCC----CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         130 --YGESEKLVRALFETARARAPAVIFIDEVDAFCSG----SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       130 --~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                        ..+....+..+..........+|+||-|-.++..    ..+.......+..++..|..+....   ++.||.|..-..
T Consensus       113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~---~iaVvvTNqv~~  189 (256)
T PF08423_consen  113 FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKY---NIAVVVTNQVTT  189 (256)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHT---T-EEEEEEEECS
T ss_pred             CCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhC---CceEEeeceeee
Confidence              0111122333333333445679999999988752    1122223455556655555443322   566666654333


Q ss_pred             CC
Q psy7809         204 DL  205 (343)
Q Consensus       204 ~l  205 (343)
                      ..
T Consensus       190 ~~  191 (256)
T PF08423_consen  190 KI  191 (256)
T ss_dssp             ST
T ss_pred             cC
Confidence            33

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.09  E-value=0.0056  Score=53.67  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ....++|.||.|+|||++.+.++.
T Consensus        30 ~g~~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          30 GGYCQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00202 tuzin; Provisional

Probab=97.09  E-value=0.0052  Score=58.54  Aligned_cols=63  Identities=14%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      +....+++|.+....+|...+.....         ..+.-+.|.|++|||||++++.+...++...+.++..
T Consensus       258 Pa~~~~FVGReaEla~Lr~VL~~~d~---------~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr  320 (550)
T PTZ00202        258 PAVIRQFVSREAEESWVRQVLRRLDT---------AHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR  320 (550)
T ss_pred             CCCccCCCCcHHHHHHHHHHHhccCC---------CCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence            34467899999999999988853211         2345678999999999999999999988777777664

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.09  E-value=0.00058  Score=57.55  Aligned_cols=28  Identities=32%  Similarity=0.309  Sum_probs=25.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..++|.|++|+||||+++.++..+.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4566899999999999999999999885

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.08  E-value=0.00079  Score=58.85  Aligned_cols=23  Identities=43%  Similarity=0.629  Sum_probs=17.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      -.++.||||||||+++..++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            37899999999998777777665

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.0033  Score=60.76  Aligned_cols=70  Identities=20%  Similarity=0.313  Sum_probs=41.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC--------CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG--------STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEV  157 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~--------~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDei  157 (343)
                      +||..+-+.||||||||||.+.+.+++.        .|+-.++... ..-.+-+....+...++.|+-..-.+|+||--
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~-RRiTflEcp~Dl~~miDvaKIaDLVlLlIdgn  144 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKT-RRITFLECPSDLHQMIDVAKIADLVLLLIDGN  144 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecce-eEEEEEeChHHHHHHHhHHHhhheeEEEeccc
Confidence            5556677999999999999999987653        2222222211 11112233455777777776654446666643

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.07  E-value=0.00055  Score=58.30  Aligned_cols=29  Identities=31%  Similarity=0.578  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ..++|.||+|+|||||++.++..++..++
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~   31 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLL   31 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence            35889999999999999999988776543

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.06  E-value=0.00057  Score=57.02  Aligned_cols=30  Identities=37%  Similarity=0.579  Sum_probs=26.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      -|.|+|++|+|||++|+.++..++.+++..
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~   31 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISA   31 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence            378999999999999999999998876543

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK08233 hypothetical protein; Provisional

Probab=97.06  E-value=0.0007  Score=57.12  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=25.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC-CceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG-STFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~-~~~~~v~~  122 (343)
                      .-|.|.|+||+||||+|+.++..++ ..++..+.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~   37 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR   37 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence            3577889999999999999999985 44444443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.05  E-value=0.0053  Score=51.20  Aligned_cols=27  Identities=41%  Similarity=0.671  Sum_probs=23.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            566678999999999999999999765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.05  E-value=0.0066  Score=59.37  Aligned_cols=27  Identities=33%  Similarity=0.415  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+..+.|.||+|+||||++..+|..+
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            445678899999999999999998754

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.05  E-value=0.0043  Score=61.43  Aligned_cols=78  Identities=23%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------------ccc--cch
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------------KHY--GES  133 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------------~~~--~~~  133 (343)
                      ++..+..++|+|+||+|||+++..++.+.   +...++++..+-..                          .+.  ...
T Consensus       269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~  348 (509)
T PRK09302        269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL  348 (509)
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence            45667789999999999999999987653   55666654322110                          000  011


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809         134 EKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       134 ~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                      ...+..+........+.+++||-+..+..
T Consensus       349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~  377 (509)
T PRK09302        349 EDHLIIIKREIEEFKPSRVAIDPLSALAR  377 (509)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence            23344455555667789999999988754

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.05  E-value=0.00059  Score=56.74  Aligned_cols=26  Identities=42%  Similarity=0.661  Sum_probs=20.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      |.|+|++|||||||++.++.. |.+++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            689999999999999999988 77655

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.04  E-value=0.006  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.312  Sum_probs=19.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      -+.+|+++|.|||++|-.+|-+.
T Consensus         4 ~i~vy~g~G~Gkt~~a~g~~~ra   26 (159)
T cd00561           4 LIQVYTGNGKGKTTAALGLALRA   26 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36788999999999999987654

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK14526 adenylate kinase; Provisional

Probab=97.03  E-value=0.00068  Score=58.93  Aligned_cols=29  Identities=28%  Similarity=0.626  Sum_probs=25.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .++|.||||+||||+++.+|..++...+.
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is   30 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHIS   30 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence            47899999999999999999998865543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.02  E-value=0.0044  Score=52.03  Aligned_cols=27  Identities=33%  Similarity=0.353  Sum_probs=23.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++...
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            556678999999999999999999764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.01  E-value=0.0007  Score=62.16  Aligned_cols=29  Identities=31%  Similarity=0.497  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh-CCceE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH-GSTFF  118 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l-~~~~~  118 (343)
                      .-+++.|+|||||||+|+.++.++ +..++
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l   32 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV   32 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence            357889999999999999999998 54443

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0034  Score=52.17  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=33.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT  126 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~  126 (343)
                      +.+..+.|+|.+|+||||+|.++...|   |.+++.++...+.
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR   63 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR   63 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence            455678899999999999999999876   7889999876654

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=97.00  E-value=0.0017  Score=69.21  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             CCCCceEEEEcCCCchHHHH-HHHHHHHhCCceEEEcCCc
Q psy7809          86 LRPWRGILLFGPPGTGKTLL-AKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~l-a~~ia~~l~~~~~~v~~~~  124 (343)
                      ....++++++||||+|||++ +-++-.++-..++.++.+.
T Consensus      1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~ 1530 (3164)
T COG5245        1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFST 1530 (3164)
T ss_pred             HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecc
Confidence            45668999999999999995 5567777777787776543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.99  E-value=0.0052  Score=52.64  Aligned_cols=27  Identities=33%  Similarity=0.610  Sum_probs=24.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||+|.+.++..+
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            566789999999999999999999876

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PLN02199 shikimate kinase

Probab=96.99  E-value=0.00086  Score=60.69  Aligned_cols=34  Identities=35%  Similarity=0.499  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ...+|+|.|.+|+|||++++.+|+.++++|+..+
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD  134 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD  134 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence            4568999999999999999999999999988765

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.98  E-value=0.021  Score=58.18  Aligned_cols=102  Identities=20%  Similarity=0.262  Sum_probs=61.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh--CCceEEEcCCccccc--------------c----------------ccchHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH--GSTFFNVLPSSLTSK--------------H----------------YGESEK  135 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l--~~~~~~v~~~~l~~~--------------~----------------~~~~~~  135 (343)
                      ..+-++|.-|.|.||||++-.++...  +..+..+++.+--+.              +                ......
T Consensus        36 ~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~  115 (894)
T COG2909          36 DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES  115 (894)
T ss_pred             CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence            34568999999999999999998633  333333333221110              0                011122


Q ss_pred             HHHHHHHHH-HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         136 LVRALFETA-RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       136 ~i~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      .+..+|... ....|..|+|||.+.+-     +......+..|++..        +.++.+|.+|...
T Consensus       116 l~~~L~~Ela~~~~pl~LVlDDyHli~-----~~~l~~~l~fLl~~~--------P~~l~lvv~SR~r  170 (894)
T COG2909         116 LLSSLLNELASYEGPLYLVLDDYHLIS-----DPALHEALRFLLKHA--------PENLTLVVTSRSR  170 (894)
T ss_pred             HHHHHHHHHHhhcCceEEEeccccccC-----cccHHHHHHHHHHhC--------CCCeEEEEEeccC
Confidence            455555543 44578999999999883     334445555666554        4467777666543

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.97  E-value=0.0016  Score=60.53  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ...+.|.|++|+|||||++.++..++.+++.-.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~  194 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEY  194 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeeh
Confidence            357899999999999999999999988775443

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=96.97  E-value=0.032  Score=52.99  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             CCceEEEEcCCCchHHHHH--HHHHHHhCCceEEEcCCccc
Q psy7809          88 PWRGILLFGPPGTGKTLLA--KAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la--~~ia~~l~~~~~~v~~~~l~  126 (343)
                      +..-|++.||.||||+.|+  +++..  ..++.+++|..+.
T Consensus        16 ~~TFIvV~GPrGSGK~elV~d~~L~~--r~~vL~IDC~~i~   54 (431)
T PF10443_consen   16 PNTFIVVQGPRGSGKRELVMDHVLKD--RKNVLVIDCDQIV   54 (431)
T ss_pred             CCeEEEEECCCCCCccHHHHHHHHhC--CCCEEEEEChHhh
Confidence            4456888999999999999  44443  3347777776554

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=96.96  E-value=0.0026  Score=63.92  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .-.+|.|+|||||||+++.+...+
T Consensus       168 ~~~vItGgpGTGKTt~v~~ll~~l  191 (615)
T PRK10875        168 RISVISGGPGTGKTTTVAKLLAAL  191 (615)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHH
Confidence            468899999999999998886554

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.96  E-value=0.0013  Score=55.37  Aligned_cols=36  Identities=25%  Similarity=0.251  Sum_probs=28.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      ++..+.|.|+||+|||++++.++..+   +..+..++..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D   41 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD   41 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence            45678899999999999999999887   3345556554

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.96  E-value=0.001  Score=62.65  Aligned_cols=23  Identities=48%  Similarity=0.608  Sum_probs=21.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      -+++.|.||||||.||-.++.++
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            47899999999999999999988

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=96.96  E-value=0.0021  Score=64.39  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .-++|.|+||||||+++..+...+
T Consensus       161 ~~~vitGgpGTGKTt~v~~ll~~l  184 (586)
T TIGR01447       161 NFSLITGGPGTGKTTTVARLLLAL  184 (586)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999998886554

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.94  E-value=0.0014  Score=56.85  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC-CceEEEcCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG-STFFNVLPSS  124 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~-~~~~~v~~~~  124 (343)
                      ..+.-|.|.|++|||||||++.++..++ ..+..++..+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~   42 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS   42 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence            3456788999999999999999999984 3344444433

>PRK12338 hypothetical protein; Provisional

Probab=96.94  E-value=0.00098  Score=61.17  Aligned_cols=31  Identities=23%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      .|.-+++.|+||+||||+|+.+|..++...+
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~   33 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHL   33 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence            4567899999999999999999999987543

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.94  E-value=0.00054  Score=64.57  Aligned_cols=45  Identities=33%  Similarity=0.519  Sum_probs=36.5

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .+++|..-.+.++++|.+                 ...|+|+.||||.||||+|+++|.-+.
T Consensus       244 ~~ledY~L~dkl~eRL~e-----------------raeGILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         244 LSLEDYGLSDKLKERLEE-----------------RAEGILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             echhhcCCCHHHHHHHHh-----------------hhcceEEecCCCCChhHHHHHHHHHHH
Confidence            556776667788888774                 336899999999999999999997663

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.93  E-value=0.001  Score=56.94  Aligned_cols=37  Identities=35%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      -++|+||+|||||.+|-++|+.++.+++..+.-....
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~   39 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP   39 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence            3689999999999999999999999999987654443

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.91  E-value=0.0018  Score=61.78  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ..|.|.|++|||||||++++|..++...+
T Consensus       220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        220 RTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            56999999999999999999999887644

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.91  E-value=0.0012  Score=56.72  Aligned_cols=29  Identities=24%  Similarity=0.291  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTF  117 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~  117 (343)
                      +.-+++.|+||+|||++++.+|.+++..+
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~   31 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRAIDI   31 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence            34688999999999999999999988654

>PRK14529 adenylate kinase; Provisional

Probab=96.91  E-value=0.00085  Score=58.70  Aligned_cols=28  Identities=32%  Similarity=0.551  Sum_probs=25.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      .++|.||||+||||+++.++..++.+.+
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i   29 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHI   29 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence            4789999999999999999999987654

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.90  E-value=0.0026  Score=52.26  Aligned_cols=60  Identities=25%  Similarity=0.384  Sum_probs=39.5

Q ss_pred             EcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809          95 FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus        95 ~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      .+..||||||++.++++.++- +-.+.-.++.++   ...+.+..+...+......++|.|-=.
T Consensus         5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNN   64 (168)
T PF08303_consen    5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNN   64 (168)
T ss_pred             ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            478999999999999999883 223443444433   344556666666644444688888543

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.90  E-value=0.0062  Score=52.20  Aligned_cols=117  Identities=24%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc----------------------------------CCccccc
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL----------------------------------PSSLTSK  128 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~----------------------------------~~~l~~~  128 (343)
                      ++.+.-+++.|+.|+|||.|.+.++.=+   +..+.+++                                  ...+. .
T Consensus        25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~-~  103 (235)
T COG2874          25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN-W  103 (235)
T ss_pred             CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc-c
Confidence            4555568899999999999999998532   22222221                                  11110 0


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA  208 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~  208 (343)
                      ........++.+....+.....|++||-+..++...     +......++..+..+...    +-+||.| -+|+.+++.
T Consensus       104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----~~~~vl~fm~~~r~l~d~----gKvIilT-vhp~~l~e~  173 (235)
T COG2874         104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----SEDAVLNFMTFLRKLSDL----GKVIILT-VHPSALDED  173 (235)
T ss_pred             ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----cHHHHHHHHHHHHHHHhC----CCEEEEE-eChhhcCHH
Confidence            112234456666666666667899999998876422     222333445555544432    2244444 456778877


Q ss_pred             Hhccc
Q psy7809         209 LKRRF  213 (343)
Q Consensus       209 l~~rf  213 (343)
                      +..|+
T Consensus       174 ~~~ri  178 (235)
T COG2874         174 VLTRI  178 (235)
T ss_pred             HHHHH
Confidence            76654

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.89  E-value=0.0011  Score=54.48  Aligned_cols=38  Identities=32%  Similarity=0.382  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS  127 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~  127 (343)
                      ..|.|+|.||+||||||+++...+   +.+++.++...+..
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~   43 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH   43 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence            457899999999999999999876   67788887655543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.89  E-value=0.0075  Score=53.50  Aligned_cols=21  Identities=38%  Similarity=0.455  Sum_probs=18.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+|+||+|+|||+|+..+|..
T Consensus         4 ~ll~g~~G~GKS~lal~la~~   24 (239)
T cd01125           4 SALVAPGGTGKSSLLLVLALA   24 (239)
T ss_pred             eEEEcCCCCCHHHHHHHHHHH
Confidence            589999999999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR00959 ffh signal recognition particle protein

Probab=96.89  E-value=0.0098  Score=57.18  Aligned_cols=73  Identities=23%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccc----------------c---ccc-hHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSK----------------H---YGE-SEKLVRALFET  143 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~----------------~---~~~-~~~~i~~~~~~  143 (343)
                      +|..+++.|++|+||||++..+|..+    +..+..+++......                +   .+. ........+..
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~  177 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY  177 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence            46779999999999999998888764    455666665432210                0   001 12333455555


Q ss_pred             HHHcCCcEEEEcccccc
Q psy7809         144 ARARAPAVIFIDEVDAF  160 (343)
Q Consensus       144 a~~~~p~il~iDeid~l  160 (343)
                      +......+|++|-...+
T Consensus       178 ~~~~~~DvVIIDTaGr~  194 (428)
T TIGR00959       178 AKENGFDVVIVDTAGRL  194 (428)
T ss_pred             HHhcCCCEEEEeCCCcc
Confidence            65666789999988554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.85  E-value=0.0058  Score=56.28  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCccccc----------------cccchHHHHHHHHHHHHHc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTSK----------------HYGESEKLVRALFETARAR  147 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~a~~~  147 (343)
                      +..+-+-++||+|+|||+|+-.+..+   .+.....+++..-...                .+...+..+..+-...+..
T Consensus        51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg  130 (322)
T PF00154_consen   51 PRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSG  130 (322)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred             ccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcc
Confidence            44455779999999999998877543   4566666665332211                1222333443333334444


Q ss_pred             CCcEEEEcccccccCC--------CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809         148 APAVIFIDEVDAFCSG--------SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD  204 (343)
Q Consensus       148 ~p~il~iDeid~l~~~--------~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~  204 (343)
                      ..+++++|-+..+.+.        ...-....+++..+++.+...-...   ++.+|++..-.+.
T Consensus       131 ~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~---~~~~i~INQ~R~~  192 (322)
T PF00154_consen  131 AVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKS---NTTLIFINQVRDK  192 (322)
T ss_dssp             SESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTT---T-EEEEEEEESSS
T ss_pred             cccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhh---ceEEEEeehHHHH
Confidence            5579999999999861        1122345567777777665443322   5667666544433

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PLN02459 probable adenylate kinase

Probab=96.85  E-value=0.0013  Score=58.73  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ..++|.||||+||+|+++.+|..++...+.
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is   59 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIA   59 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence            358889999999999999999999865444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	343
3vfd_A	389	Human Spastin Aaa Domain Length = 389		6e-55
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		7e-53
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		7e-52
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		7e-52
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		1e-51
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		2e-51
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		2e-51
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		1e-50
3b9p_A	297	Spastin Length = 297		2e-47
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		2e-35
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		5e-32
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		2e-35
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		2e-35
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		2e-35
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		3e-35
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		3e-35
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		5e-32
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		4e-32
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		7e-32
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		2e-31
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		4e-30
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		1e-28
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		5e-28
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		1e-27
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		3e-27
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		3e-27
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		7e-27
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		9e-27
2ce7_A	476	Edta Treated Length = 476		3e-26
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		1e-25
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		3e-21
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		7e-19
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		1e-18
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		1e-18
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		1e-18
1ofh_A	310	Asymmetric Complex Between Hslv And I-domain Delete		4e-05

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score =  211 bits (536), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 179/325 (55%), Gaps = 45/325 (13%)
Query: 32  RRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRG 91
           R  +  L  L+  +IV   T V +DDIAG D  KQ  +E ++LP L P+LF G+  P RG
Sbjct: 91  RNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARG 150
Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
           +LLFGPPG GKT+LAKAVA++  +TFFN+  +SLTSK+ GE EKLVRALF  AR   P++
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSI 210
Query: 152 IFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL 209
           IFID+VD+     R  EH+A+RR++ E L   DGV + +GD  VLV+ ATN P +LDEA+
Sbjct: 211 IFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLVMGATNRPQELDEAV 269
Query: 210 KRRFEKRISPIQIIGLCLGEIRKDPNV-------------DVATLSKQLIGYSGSDIRDL 256
            RRF KR+     + L   E R                  ++A L++   GYSGSD+  L
Sbjct: 270 LRRFIKRV----YVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325
Query: 257 CQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFER 316
            ++  L   RE+             P+   N+ A             S+   +  S F  
Sbjct: 326 AKDAALGPIREL------------KPEQVKNMSA-------------SEMRNIRLSDFTE 360
Query: 317 AKEKCRKSVDGALIRKYKRWNELYG 341
           + +K ++SV    +  Y RWN+ +G
Sbjct: 361 SLKKIKRSVSPQTLEAYIRWNKDFG 385

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score =  204 bits (518), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 120/278 (43%), Positives = 164/278 (58%), Gaps = 14/278 (5%)
Query: 35  NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILL 94
           N +L   +   I+     V W+D+AGL+  K+  KE ++LP   P LFKG  +P  GILL
Sbjct: 30  NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILL 89
Query: 95  FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFI 154
           +GPPGTGK+ LAKAVA++  STFF+V  S L SK  GESEKLV+ LF  AR   P++IFI
Sbjct: 90  YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 149
Query: 155 DEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR 212
           D+VDA     G  E EA+RR++ ELL  M+GVG  S  +GVLVL ATN PW LD A++RR
Sbjct: 150 DQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRR 207
Query: 213 FEKRIS---PIQIIGLCLGEIR--KDPNV----DVATLSKQLIGYSGSDIRDLCQEIILI 263
           FE+RI    P       + EI     P+V    D  TL     GYSGSDI  + ++ ++ 
Sbjct: 208 FERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267
Query: 264 AAREVIQNAGFTGVNSKPPDGRN-NIGAKGDDSKCQVA 300
             R++     F  V+++  + R     + GDD   +++
Sbjct: 268 PIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMS 305

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score =  201 bits (510), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/273 (43%), Positives = 161/273 (58%), Gaps = 16/273 (5%)
Query: 41  LVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGT 100
           LV +  +     V W+D+AGL+  K+  KE ++LP   P LFKG  +P  GILL+GPPGT
Sbjct: 12  LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT 71
Query: 101 GKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF 160
           GK+ LAKAVA++  STFF+V  S L SK  GESEKLV+ LF  AR   P++IFIDEVDA 
Sbjct: 72  GKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
Query: 161 CS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS 218
               G  E EA+RR++ ELL  M+GVG  S  +GVLVL ATN PW LD A++RRFE+RI 
Sbjct: 132 TGTRGEGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRRFERRIY 189
Query: 219 PIQIIGLCLGEIRKDPNV----------DVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268
            I +  L       + NV          D  TL     GYSGSDI  + ++ ++   R++
Sbjct: 190 -IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 248
Query: 269 IQNAGFTGVNSKPPDGRN-NIGAKGDDSKCQVA 300
                F  V+++  + R     + GDD   +++
Sbjct: 249 QSATHFKDVSTEDDETRKLTPCSPGDDGAIEMS 281

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score =  200 bits (509), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/279 (42%), Positives = 163/279 (58%), Gaps = 16/279 (5%)
Query: 35  NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILL 94
           N +L   +   I+     V W+D+AGL+  K+  KE ++LP   P LFKG  +P  GILL
Sbjct: 15  NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILL 74
Query: 95  FGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFI 154
           +GPPGTGK+ LAKAVA++  STFF+V  S L SK  GESEKLV+ LF  AR   P++IFI
Sbjct: 75  YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 134
Query: 155 DEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR 212
           D+VDA     G  E EA+RR++ ELL  M+GVG  S  +GVLVL ATN PW LD A++RR
Sbjct: 135 DQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRR 192
Query: 213 FEKRISPIQIIGLCLGEIRKDPNV----------DVATLSKQLIGYSGSDIRDLCQEIIL 262
           FE+RI  I +  L       + NV          D  TL     GYSGSDI  + ++ ++
Sbjct: 193 FERRIY-IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 251
Query: 263 IAAREVIQNAGFTGVNSKPPDGRN-NIGAKGDDSKCQVA 300
              R++     F  V+++  + R     + GDD   +++
Sbjct: 252 QPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMS 290

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/321 (38%), Positives = 175/321 (54%), Gaps = 37/321 (11%)
Query: 32  RRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRG 91
           +   P++  L+  +I+     V W+DIAG++  K   KE ++ P L P +F G+  P +G
Sbjct: 60  KNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKG 119
Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
           ILLFGPPGTGKTL+ K +ASQ G+TFF++  SSLTSK  GE EK+VRALF  AR + PAV
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAV 179
Query: 152 IFIDEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL 209
           IFIDE+D+  S  G  EHE++RR++ E L  +DG  T S D+ +LV+ ATN P ++DEA 
Sbjct: 180 IFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR-ILVVGATNRPQEIDEAA 238
Query: 210 KRRFEKRIS-PIQ--------IIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEI 260
           +RR  KR+  P+         +I L   E       ++  + +Q   +SG+D+  LC+E 
Sbjct: 239 RRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298
Query: 261 ILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEK 320
            L   R  +Q A    +    PD              QV P+           FE A   
Sbjct: 299 SLGPIRS-LQTADIATIT---PD--------------QVRPIA-------YIDFENAFRT 333
Query: 321 CRKSVDGALIRKYKRWNELYG 341
            R SV    +  Y+ WN+ +G
Sbjct: 334 VRPSVSPKDLELYENWNKTFG 354

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/314 (39%), Positives = 179/314 (57%), Gaps = 21/314 (6%)
Query: 46  IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
           I+     V W+D+AGL+  K+  KE ++LP   P LFKG  +P  GILL+GPPGTGK+ L
Sbjct: 8   ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 106 AKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--G 163
           AKAVA++  STFF+V  S L SK  GESEKLV+ LF  AR   P++IFID+VDA     G
Sbjct: 68  AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQII 223
             E EA+RR++ ELL  M+GVG  S  +GVLVL ATN PW LD A++RRFE+RI  I + 
Sbjct: 128 EGESEASRRIKTELLVQMNGVGNDS--QGVLVLGATNIPWQLDSAIRRRFERRIY-IPLP 184
Query: 224 GLCLGEIRKDPNV----------DVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273
            L       + NV          D  TL     GYSGSDI  + ++ ++   R++     
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244
Query: 274 FTGVNSKPPDGRN-NIGAKGDDSKCQVA--PLGSDRIV---LNRSHFERAKEKCRKSVDG 327
           F  V+++  + R     + GDD   +++   + +D +    L    F +A +  R +V+ 
Sbjct: 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 304
Query: 328 ALIRKYKRWNELYG 341
             + K +++   +G
Sbjct: 305 DDLLKQEQFTRDFG 318

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 149/245 (60%), Gaps = 16/245 (6%)
Query: 46  IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
           IV     V W D+AGL+  K+  KE ++LP   P LF G   PWRGILLFGPPGTGK+ L
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183
Query: 106 AKAVASQ-HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164
           AKAVA++ + STFF++  S L SK  GESEKLV+ LF+ AR   P++IFIDE+D+ C GS
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC-GS 242
Query: 165 R---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-PI 220
           R   E EA RR++ E L  M GVG    + G+LVL ATN PW LD A++RRFEKRI  P+
Sbjct: 243 RSENESEAARRIKTEFLVQMQGVGV--DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 300
Query: 221 -------QIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA 272
                   +  L LG  +      D   L ++  GYSG+DI  + ++ ++   R+V    
Sbjct: 301 PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 360
Query: 273 GFTGV 277
            F  V
Sbjct: 361 HFKKV 365

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score =  197 bits (500), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 149/245 (60%), Gaps = 16/245 (6%)
Query: 46  IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
           IV     V W D+AGL+  K+  KE ++LP   P LF G   PWRGILLFGPPGTGK+ L
Sbjct: 2   IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 106 AKAVASQ-HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164
           AKAVA++ + STFF++  S L SK  GESEKLV+ LF+ AR   P++IFIDE+D+ C GS
Sbjct: 62  AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC-GS 120
Query: 165 R---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-PI 220
           R   E EA RR++ E L  M GVG    + G+LVL ATN PW LD A++RRFEKRI  P+
Sbjct: 121 RSENESEAARRIKTEFLVQMQGVGV--DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 178
Query: 221 -------QIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA 272
                   +  L LG  +      D   L ++  GYSG+DI  + ++ ++   R+V    
Sbjct: 179 PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238
Query: 273 GFTGV 277
            F  V
Sbjct: 239 HFKKV 243

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/317 (38%), Positives = 176/317 (55%), Gaps = 38/317 (11%)
Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L  L+  +IV+    V W DIAG D  KQ  +E ++LP + P+LF G+  P +G+LLFG
Sbjct: 2   KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPG GKTLLA+AVA++  +TF N+  +SLTSK+ G+ EKLVRALF  AR   P++IFIDE
Sbjct: 62  PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 157 VDAFCSGSRE--HEATRRVRCELLSHMDGV-GTGSGDKGVLVLAATNHPWDLDEALKRRF 213
           VD+  S      HEA+RR++ E L   DG+ G   GD+ ++VLAATN P +LDEA  RRF
Sbjct: 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR-IVVLAATNRPQELDEAALRRF 180
Query: 214 EKRISPI----QIIGLCLGEIRKDPNVDVAT-----LSKQLIGYSGSDIRDLCQEIILIA 264
            KR+       Q   L L  + +     + T     L+K   GYSGSD+  L ++  L  
Sbjct: 181 TKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240
Query: 265 AREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS 324
            RE+                  N+    +  KC    + + R +     F  + ++ R+S
Sbjct: 241 IREL------------------NV----EQVKC--LDISAMRAI-TEQDFHSSLKRIRRS 275
Query: 325 VDGALIRKYKRWNELYG 341
           V    +  Y++W++ YG
Sbjct: 276 VAPQSLNSYEKWSQDYG 292

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28  VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
           V P+   + E   +  +D  ++   VG+DDI G        KE + LP   P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           +P RGILL+GPPGTGKTL+A+AVA++ G+ FF +    + SK  GESE  +R  FE A  
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
            APA+IFIDE+DA      + H E  RR+  +LL+ MDG+   +    V+V+AATN P  
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           +D AL+R  RF++ +          ++I+ +    ++   +VD+  ++ +  G+ G+D+ 
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
            LC E  L A R+
Sbjct: 413 ALCSEAALQAIRK 425

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 31/300 (10%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLF-KGILRPWRGILLFGPPGTGKTLLAKAVAS 111
           V W+DI GL++VK+  +E +  P   P  F K  + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SRE 166
           +  + F ++    L +  +GESE  VR +F+ AR  AP V+F DE+D+            
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS-PI--- 220
             A  RV  ++L+ MDG+ T    K V ++ ATN P  +D A+ R  R ++ I  P+   
Sbjct: 594 GGAADRVINQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 221 -QIIGLCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276
              + +    +RK P   +VD+  L+K   G+SG+D+ ++CQ    +A RE I++     
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Query: 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336
              +     + +  + DD   ++           R HFE A    R+SV    IRKY+ +
Sbjct: 711 RERQT--NPSAMEVEEDDPVPEI----------RRDHFEEAMRFARRSVSDNDIRKYEMF 758

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28  VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
           V P+   + E   +  +D  ++   VG+DDI G        KE + LP   P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           +P RGILL+GPPGTGKTL+A+AVA++ G+ FF +    + SK  GESE  +R  FE A  
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
            APA+IFIDE+DA      + H E  RR+  +LL+ MDG+   +    V+V+AATN P  
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           +D AL+R  RF++ +          ++I+ +    ++   +VD+  ++ +  G+ G+D+ 
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
            LC E  L A R+
Sbjct: 413 ALCSEAALQAIRK 425

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28  VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
           V P+   + E   +  +D  ++   VG+DDI G        KE + LP   P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           +P RGILL+GPPGTGKTL+A+AVA++ G+ FF +    + SK  GESE  +R  FE A  
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
            APA+IFIDE+DA      + H E  RR+  +LL+ MDG+   +    V+V+AATN P  
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           +D AL+R  RF++ +          ++I+ +    ++   +VD+  ++ +  G+ G+D+ 
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
            LC E  L A R+
Sbjct: 413 ALCSEAALQAIRK 425

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28  VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
           V P+   + E   +  +D  ++   VG+DDI G        KE + LP   P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           +P RGILL+GPPGTGKTL+A+AVA++ G+ FF +    + SK  GESE  +R  FE A  
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
            APA+IFIDE+DA      + H E  RR+  +LL+ MDG+   +    V+V+AATN P  
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           +D AL+R  RF++ +          ++I+ +    ++   +VD+  ++ +  G+ G+D+ 
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
            LC E  L A R+
Sbjct: 413 ALCSEAALQAIRK 425

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28  VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
           V P+   + E   +  +D  ++   VG+DD+ G        KE + LP   P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           +P RGILL+GPPGTGKTL+A+AVA++ G+ FF +    + SK  GESE  +R  FE A  
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
            APA+IFIDE+DA      + H E  RR+  +LL+ MDG+   +    V+V+AATN P  
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           +D AL+R  RF++ +          ++I+ +    ++   +VD+  ++ +  G+ G+D+ 
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
            LC E  L A R+
Sbjct: 413 ALCSEAALQAIRK 425

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 28  VGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-L 86
           V P+   + E   +  +D  ++   VG+DD+ G        KE + LP   P LFK I +
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           +P RGILL+GPPGTGKTL+A+AVA++ G+ FF +    + SK  GESE  +R  FE A  
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 147 RAPAVIFIDEVDAFCSG-SREH-EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
            APA+IFIDE+DA      + H E  RR+  +LL+ MDG+   +    V+V+AATN P  
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS 352
Query: 205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           +D AL+R  RF++ +          ++I+ +    ++   +VD+  ++ +  G+ G+D+ 
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412
Query: 255 DLCQEIILIAARE 267
            LC E  L A R+
Sbjct: 413 ALCSEAALQAIRK 425

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score =  134 bits (338), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 31/300 (10%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLF-KGILRPWRGILLFGPPGTGKTLLAKAVAS 111
           V W+DI GL++VK+  +E +  P   P  F K  + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SRE 166
           +  + F ++    L +  +GESE  VR +F+ AR  AP V+F DE+D+            
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS-PI--- 220
             A  RV  ++L+ MDG+ T    K V ++ ATN P  +D A+ R  R ++ I  P+   
Sbjct: 594 GGAADRVINQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 221 -QIIGLCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276
              + +    +RK P   +VD+  L+K   G+SG+D+ ++CQ    +A RE I++     
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Query: 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336
              +     + +  + DD   ++           R HFE A    R+SV    IRKY+ +
Sbjct: 711 RERQT--NPSAMEVEEDDPVPEI----------RRDHFEEAMRFARRSVSDNDIRKYEMF 758

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 156/302 (51%), Gaps = 31/302 (10%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLF-KGILRPWRGILLFGPPGTGKTLLAKAVAS 111
           V W+DI GL++VK+  +E +  P   P  F K  + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 12  VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SRE 166
           +  + F ++    L +  +GESE  VR +F+ AR  AP V+F DE+D+            
Sbjct: 72  ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS-PI--- 220
             A  RV  ++L+ MDG+ T    K V ++ ATN P  +D A+ R  R ++ I  P+   
Sbjct: 132 GGAADRVINQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 221 -QIIGLCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276
              + +    +RK P   +VD+  L+K   G+SG+D+ ++CQ    +A RE I++     
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 248
Query: 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336
              +     + +  + DD   ++           R HFE A    R+SV    IRKY+ +
Sbjct: 249 RERQ--TNPSAMEVEEDDPVPEI----------RRDHFEEAMRFARRSVSDNDIRKYEMF 296
Query: 337 NE 338
            +
Sbjct: 297 AQ 298

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score =  134 bits (337), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 138/235 (58%), Gaps = 25/235 (10%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V ++DI GL+   Q  +E + LP   P+LF+ + + P +GILL+GPPGTGKTLLAKAVA+
Sbjct: 14  VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--------G 163
           +  +TF  V+ S L  K  GE   LV+ +F+ A+ +AP++IFIDE+DA  +        G
Sbjct: 74  ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI---S 218
            RE    +R   +LL+ MDG     GD  V ++ ATN P  LD A+ R  RF++ I   +
Sbjct: 134 DRE---VQRTLMQLLAEMDGF-DARGD--VKIIGATNRPDILDPAILRPGRFDRIIEVPA 187
Query: 219 P-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV 268
           P     ++I+ +   ++    +V++  ++K   G  G++++ +C E  + A RE+
Sbjct: 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 21/230 (9%)
Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQH 113
           + DI GL++  Q  KE++ LP   P+L++ + ++P +G++L+G PGTGKTLLAKAVA+Q 
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 114 GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA-----FCSGSREHE 168
            +TF  ++ S L  K+ G+  +L R +F+ A   AP+++FIDE+DA     + S S    
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 169 ATRRVRCELLSHMDGVGTGSGDKG-VLVLAATNHPWDLDEALKR--RFEKRI-------- 217
             +R   ELL+ +DG      D+G V V+ ATN    LD AL R  R +++I        
Sbjct: 301 EIQRTMLELLNQLDGF----DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 218 SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           +  +I+G+   ++    +V++ TL       SG+DI+ +C E  L+A RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 123/231 (53%), Gaps = 19/231 (8%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           + +D I GL    +  +E + LP   P++F+ + ++P +G+LL+GPPGTGKTLLAKAVA+
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA-----FCSGSRE 166
             G+ F     S +  K+ GES +++R +F  A+   P +IF+DEVDA     F  G+  
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------ 218
               +R   ELL+ MDG       K   ++ ATN P  LD AL R  R ++++       
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTK---IIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 354
Query: 219 --PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
              ++I  +   +++K    D     K   G++G+DIR+   E    A R+
Sbjct: 355 AGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 27/240 (11%)
Query: 49  TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLA 106
           T   V W DI  L+++++     +L P   P  FK  G++ P  G+LL GPPG GKTLLA
Sbjct: 3   TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLA 61
Query: 107 KAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GS 164
           KAVA++ G  F +V    L + + GESE+ VR +F+ A+  AP VIF DEVDA C     
Sbjct: 62  KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121
Query: 165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIG 224
           RE  A+ RV  +LL+ MDG+      + V ++AATN P  +D A+ R    R+     +G
Sbjct: 122 RETGASVRVVNQLLTEMDGL---EARQQVFIMAATNRPDIIDPAILR--PGRLDKTLFVG 176
Query: 225 L--------CLGEIRKD---PNVDVATLSKQLIG------YSGSDIRDLCQEIILIAARE 267
           L         L  I K+   P +D     + + G      Y+G+D+  L +E  + A R+
Sbjct: 177 LPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 121/236 (51%), Gaps = 28/236 (11%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V + D+ GLD  KQ  +E + LP +   L++ I + P RG+LL+GPPGTGKT+L KAVA+
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA-----FCSGSRE 166
              + F  V  S    K+ GE  ++VR +F  AR  AP++IFIDEVD+     F + +  
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--------------- 211
               +R+  ELL+ MDG    +    V V+ ATN    LD AL R               
Sbjct: 289 DREVQRILIELLTQMDGFDQST---NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345
Query: 212 RFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           R E+R+    I G    ++   P  D+ +L  +    SG+ I  + QE  L A R+
Sbjct: 346 RRERRL----IFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 21/230 (9%)
Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLAKAVASQ 112
           +D + GL    +  KE + LP   P+LF+  GI +P +G++L+GPPGTGKTLLA+AVA  
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKTLLARAVAHH 205
Query: 113 HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----H 167
               F  V  + L  K+ GE  ++VR LF  AR  AP++IF+DE+D+  S   E      
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265
Query: 168 EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI-------- 217
              +R   ELL+ +DG  T    K + ++ ATN    LD AL R  R +++I        
Sbjct: 266 SEVQRTMLELLNQLDGFETS---KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322
Query: 218 SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           +  +I+ +   ++     +++  +++++ G SG+D++ +C E  + A RE
Sbjct: 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 26/234 (11%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V + D+AG +  K+   E +   K  P+ +  +  +  +G+LL GPPGTGKTLLAKAVA 
Sbjct: 8   VRFKDMAGNEEAKEEVVEIVDFLK-YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF---------CS 162
           +    FF++  SS      G     VR LFETA+ +AP++IFIDE+DA           S
Sbjct: 67  EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 163 GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--- 217
           G+ E E T     +LL+ MDG   GS +  V+VLAATN P  LD AL R  RF++++   
Sbjct: 127 GNDEREQTLN---QLLAEMDGF--GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181
Query: 218 -----SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266
                  ++I+ + +  ++   +V++  ++K   G +G+D+ ++  E  L+A R
Sbjct: 182 KPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 25/231 (10%)
Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQH 113
           + D+ GLD   +   E ++LP      FK + +R  +G L++GPPGTGKTLLA+A A+Q 
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 114 GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC--------SGSR 165
            +TF  +    L   + GE  KLVR  F  A+ +AP +IFIDE+DA          SG R
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 166 EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI------ 217
           E    +R   ELL+ +DG    S D  V VLAATN    LD AL R  R +++I      
Sbjct: 300 E---VQRTMLELLNQLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 218 --SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266
             S  QI+ +   ++  D +++   L++    ++G+ ++ +  E  +IA R
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score =  117 bits (294), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 23/250 (9%)
Query: 33  RANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRG 91
           R +P +T +     V+    V + D+ G  +  +  +E + LP L P+ F  + + P +G
Sbjct: 190 RIDPSVTMMT----VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKG 245
Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
           ILL+GPPGTGKTL A+AVA++  +TF  V+ S L  K+ GE  ++VR LFE AR +   +
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACI 305
Query: 152 IFIDEVDA-----FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD 206
           IF DE+DA     F  G+      +R   EL++ +DG       K   V+ ATN P  LD
Sbjct: 306 IFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK---VMFATNRPNTLD 362
Query: 207 EALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDL 256
            AL R  R ++++            I  +    +  +  +    +S+     +G+++R +
Sbjct: 363 PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSV 422
Query: 257 CQEIILIAAR 266
           C E  + A R
Sbjct: 423 CTEAGMFAIR 432

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 24/230 (10%)
Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
           + D+AG D  K+   E +   +   +  K   +  +G+L+ GPPGTGKTLLAKA+A +  
Sbjct: 11  FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70
Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSGSRE 166
             FF +  S       G     VR +FE A+  AP +IFIDE+DA           G  E
Sbjct: 71  VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDE 130
Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI------- 217
            E T     ++L  MDG     G++G++V+AATN P  LD AL R  RF++++       
Sbjct: 131 REQTLN---QMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 218 -SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR 266
               QI+ + +  +   P++D A +++   G+SG+D+ +L  E  L AAR
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 123/234 (52%), Gaps = 26/234 (11%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V + D+ G +   +  KE +   K  P  F  I  R  +GILL GPPGTGKTLLA+AVA 
Sbjct: 13  VTFKDVGGAEEAIEELKEVVEFLK-DPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSG 163
           +    FF++  S       G     VR LF  A+A AP ++FIDE+DA           G
Sbjct: 72  EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--SP 219
             E E T     +LL  MDG  +    +G++V+AATN P  LD AL R  RF+K+I   P
Sbjct: 132 HDEREQTLN---QLLVEMDGFDS---KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 220 IQIIG---LCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
             ++G   +     R  P   +V++  ++K+  G+ G+D+ +L  E  L+AARE
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 26/234 (11%)
Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V + D+ G +   +  KE +   K  P  F  I  R  +GILL GPPGTG TLLA+AVA 
Sbjct: 13  VTFKDVGGAEEAIEELKEVVEFLK-DPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSG 163
           +    FF++  S       G     VR LF  A+A AP ++FIDE+DA           G
Sbjct: 72  EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--SP 219
             E E T     +LL  MDG  +    +G++V+AATN P  LD AL R  RF+K+I   P
Sbjct: 132 HDEREQTLN---QLLVEMDGFDS---KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 220 IQIIG---LCLGEIRKDP---NVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
             ++G   +     R  P   +V++  ++K+  G+ G+D+ +L  E  L+AARE
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 129/254 (50%), Gaps = 42/254 (16%)
Query: 52  GVGWDDIAGLDNVK---QIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKA 108
           GV + D+AG+   K   + F + L  P+   QL  G   P +G LL GPPG GKTLLAKA
Sbjct: 2   GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQL--GAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 109 VASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF-------C 161
           VA++    F  +  +       G     VR+LF+ ARARAP +++IDE+DA         
Sbjct: 59  VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 162 SGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRISP 219
           SG    E  + +  +LL  MDG+GT      V+VLA+TN    LD AL R  R ++ +  
Sbjct: 119 SGFSNTEEEQTLN-QLLVEMDGMGT---TDHVIVLASTNRADILDGALMRPGRLDRHV-- 172
Query: 220 IQIIGL-CLGEIRKDPNVDVATL---------SKQLI----GYSGSDIRDLCQEIILIAA 265
              I L  L E R+     + +L         S++L     G+SG+DI ++C E  L AA
Sbjct: 173 --FIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAA 230
Query: 266 REVIQNAGFTGVNS 279
           RE     G T V++
Sbjct: 231 RE-----GHTSVHT 239

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 93/189 (49%), Gaps = 34/189 (17%)
Query: 87  RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARA 146
           R  +G+LL GPPG GKT LA+AVA +    F     S       G     VR LFETA+ 
Sbjct: 47  RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 106
Query: 147 RAPAVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA 198
            AP ++FIDE+DA           G+ E E T     +LL  MDG      D  ++V+AA
Sbjct: 107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGF---EKDTAIVVMAA 160
Query: 199 TNHPWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSK 243
           TN P  LD AL R  RF+++I+              I   G  L E     +VD+A L+K
Sbjct: 161 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAK 215
Query: 244 QLIGYSGSD 252
           +  G+ G+D
Sbjct: 216 RTPGFVGAD 224

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 34/186 (18%)
Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP 149
           +G+LL GPPG GKT LA+AVA +    F     S       G     VR LFETA+  AP
Sbjct: 74  KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 150 AVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201
            ++FIDE+DA           G+ E E T     +LL  MDG      D  ++V+AATN 
Sbjct: 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGF---EKDTAIVVMAATNR 187
Query: 202 PWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSKQLI 246
           P  LD AL R  RF+++I+              I   G  L E     +VD+A L+K+  
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAKRTP 242
Query: 247 GYSGSD 252
           G+ G+D
Sbjct: 243 GFVGAD 248

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 34/186 (18%)
Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP 149
           +G+LL GPPG GKT LA+AVA +    F     S       G     VR LFETA+  AP
Sbjct: 65  KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 124
Query: 150 AVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201
            ++FIDE+DA           G+ E E T     +LL  MDG      D  ++V+AATN 
Sbjct: 125 CIVFIDEIDAVGRKRGSGVGGGNDEREQT---LNQLLVEMDGF---EKDTAIVVMAATNR 178
Query: 202 PWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSKQLI 246
           P  LD AL R  RF+++I+              I   G  L E     +VD+A L+K+  
Sbjct: 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAKRTP 233
Query: 247 GYSGSD 252
           G+ G+D
Sbjct: 234 GFVGAD 239

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 34/186 (18%)
Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAP 149
           +G+LL GPPG GKT LA+AVA +    F     S       G     VR LFETA+  AP
Sbjct: 74  KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 150 AVIFIDEVDA--------FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH 201
            ++FIDE+DA           G+ E E T     +LL  MDG      D  ++V+AATN 
Sbjct: 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGF---EKDTAIVVMAATNR 187
Query: 202 PWDLDEALKR--RFEKRIS-------------PIQIIGLCLGEIRKDPNVDVATLSKQLI 246
           P  LD AL R  RF+++I+              I   G  L E     +VD+A L+K+  
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-----DVDLALLAKRTP 242
Query: 247 GYSGSD 252
           G+ G+D
Sbjct: 243 GFVGAD 248

>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY--GESEKLVRALFETARAR 147
           + IL+ GP G GKT +A+ +A    + F  V  +  T   Y   E + ++R L ++A   
Sbjct: 51  KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 148 APAV-----IFIDEVDAFC-----SGSREHEATRR-VRCELLSHMDG--VGTGSG---DK 191
             AV     +FIDE+D  C     SG+   + +R  V+ +LL  ++G  V T  G     
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGA---DVSREGVQRDLLPLVEGSTVSTKHGMVKTD 167
Query: 192 GVLVLAA----TNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIG 247
            +L +A+       P DL   L+ R   R+    +       I  +P+  +    K L+ 
Sbjct: 168 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 227
Query: 248 YSGSDI 253
             G +I
Sbjct: 228 TEGVNI 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	1e-126
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	1e-126
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	1e-124
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	1e-123
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	1e-122
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	1e-120
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	1e-115
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-76
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	3e-75
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	5e-61
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	2e-68
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	1e-65
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	1e-62
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	9e-45
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	6e-41
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	9e-40
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	2e-38
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-38
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	6e-38
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	3e-34
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	5e-32
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	6e-32
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
3pvs_A	447	Replication-associated recombination protein A; ma	1e-08
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	6e-08
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	7e-08
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	1e-05
2chg_A	226	Replication factor C small subunit; DNA-binding pr	3e-05
2chq_A	319	Replication factor C small subunit; DNA-binding pr	6e-05
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	1e-04
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	2e-04
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	3e-04
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	4e-04
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	4e-04
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	5e-04
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	5e-04
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	5e-04
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	6e-04
2krk_A	86	26S protease regulatory subunit 8; structural geno	8e-04

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  362 bits (932), Expect = e-126
 Identities = 114/317 (35%), Positives = 167/317 (52%), Gaps = 36/317 (11%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +L  L+  +IV+    V W DIAG D  KQ  +E ++LP + P+LF G+  P +G+LLFG
Sbjct: 2   KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDE 156
           PPG GKTLLA+AVA++  +TF N+  +SLTSK+ G+ EKLVRALF  AR   P++IFIDE
Sbjct: 62  PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121

Query: 157 VDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFE 214
           VD+  S   S EHEA+RR++ E L   DG+        ++VLAATN P +LDEA  RRF 
Sbjct: 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181

Query: 215 KRI--------SPIQIIGLCLGEIRKDPNV-DVATLSKQLIGYSGSDIRDLCQEIILIAA 265
           KR+        +   ++   L +     +   +  L+K   GYSGSD+  L ++  L   
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241

Query: 266 REVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV 325
           RE+                              +         +    F  + ++ R+SV
Sbjct: 242 RELNVE------------------QVKCLDISAMRA-------ITEQDFHSSLKRIRRSV 276

Query: 326 DGALIRKYKRWNELYGS 342
               +  Y++W++ YG 
Sbjct: 277 APQSLNSYEKWSQDYGD 293

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  363 bits (933), Expect = e-126
 Identities = 118/315 (37%), Positives = 169/315 (53%), Gaps = 19/315 (6%)

Query: 46  IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
           I+     V W+D+AGL+  K+  KE ++LP   P LFKG  +P  GILL+GPPGTGK+ L
Sbjct: 8   ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67

Query: 106 AKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--G 163
           AKAVA++  STFF+V  S L SK  GESEKLV+ LF  AR   P++IFID+VDA     G
Sbjct: 68  AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127

Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI------ 217
             E EA+RR++ ELL  M+GV  G+  +GVLVL ATN PW LD A++RRFE+RI      
Sbjct: 128 EGESEASRRIKTELLVQMNGV--GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPD 185

Query: 218 --SPIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGF 274
             +   +  + +G+        D  TL     GYSGSDI  + ++ ++   R++     F
Sbjct: 186 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHF 245

Query: 275 TGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRI------VLNRSHFERAKEKCRKSVDGA 328
             V+++  + R        D                    L    F +A +  R +V+  
Sbjct: 246 KDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED 305

Query: 329 LIRKYKRWNELYGSR 343
            + K +++   +G  
Sbjct: 306 DLLKQEQFTRDFGQE 320

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  361 bits (928), Expect = e-124
 Identities = 128/358 (35%), Positives = 186/358 (51%), Gaps = 41/358 (11%)

Query: 1   MDTTKTNGATPKLAVVEKGKPRTGVPKVGPN----RRANPELTALVEKDIVQTDTGVGWD 56
                T+  TPK     K    T   +   +    R  +  L  L+  +IV   T V +D
Sbjct: 56  GPAPTTHKGTPKTNRTNKPSTPTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFD 115

Query: 57  DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST 116
           DIAG D  KQ  +E ++LP L P+LF G+  P RG+LLFGPPG GKT+LAKAVA++  +T
Sbjct: 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175

Query: 117 FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GSREHEATRRVR 174
           FFN+  +SLTSK+ GE EKLVRALF  AR   P++IFID+VD+        EH+A+RR++
Sbjct: 176 FFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLK 235

Query: 175 CELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI--------SPIQIIGLC 226
            E L   DGV + +GD  VLV+ ATN P +LDEA+ RRF KR+        + + ++   
Sbjct: 236 TEFLIEFDGVQS-AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNL 294

Query: 227 LGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGR 285
           L +        ++A L++   GYSGSD+  L ++  L   RE+                 
Sbjct: 295 LCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE-------------- 340

Query: 286 NNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGSR 343
                  + S  ++         +  S F  + +K ++SV    +  Y RWN+ +G  
Sbjct: 341 ----QVKNMSASEMRN-------IRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  357 bits (917), Expect = e-123
 Identities = 120/348 (34%), Positives = 177/348 (50%), Gaps = 37/348 (10%)

Query: 6   TNGATPKLAVVEKGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVK 65
                 +      G      P     +   P++  L+  +I+     V W+DIAG++  K
Sbjct: 34  EQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAK 93

Query: 66  QIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL 125
              KE ++ P L P +F G+  P +GILLFGPPGTGKTL+ K +ASQ G+TFF++  SSL
Sbjct: 94  ATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153

Query: 126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GSREHEATRRVRCELLSHMDG 183
           TSK  GE EK+VRALF  AR + PAVIFIDE+D+  S  G  EHE++RR++ E L  +DG
Sbjct: 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213

Query: 184 VGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI--------SPIQIIGLCLGEIRKD-P 234
             T S +  +LV+ ATN P ++DEA +RR  KR+        +  QI+   + + +    
Sbjct: 214 ATT-SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS 272

Query: 235 NVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDD 294
             ++  + +Q   +SG+D+  LC+E  L   R +        + +  PD           
Sbjct: 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT----ADIATITPD----------- 317

Query: 295 SKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS 342
              QV P       +    FE A    R SV    +  Y+ WN+ +G 
Sbjct: 318 ---QVRP-------IAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  353 bits (907), Expect = e-122
 Identities = 120/322 (37%), Positives = 171/322 (53%), Gaps = 26/322 (8%)

Query: 46  IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
           IV     V W D+AGL+  K+  KE ++LP   P LF G   PWRGILLFGPPGTGK+ L
Sbjct: 2   IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61

Query: 106 AKAVASQ-HGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS-- 162
           AKAVA++ + STFF++  S L SK  GESEKLV+ LF+ AR   P++IFIDE+D+ C   
Sbjct: 62  AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121

Query: 163 GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI----- 217
              E EA RR++ E L  M GVG    + G+LVL ATN PW LD A++RRFEKRI     
Sbjct: 122 SENESEAARRIKTEFLVQMQGVGV--DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179

Query: 218 ---SPIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273
              +   +  L LG  +      D   L ++  GYSG+DI  + ++ ++   R+V     
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239

Query: 274 FTGVNSKPPDGRNNIGAKGDDSKCQVAP---------LGSDRIV---LNRSHFERAKEKC 321
           F  V        N++            P         +  D+++   ++ S   R+    
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299

Query: 322 RKSVDGALIRKYKRWNELYGSR 343
           + +V+   + K K++ E +G  
Sbjct: 300 KPTVNEHDLLKLKKFTEDFGQE 321

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  349 bits (896), Expect = e-120
 Identities = 121/343 (35%), Positives = 176/343 (51%), Gaps = 19/343 (5%)

Query: 18  KGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKL 77
             K  +           N +L   +   I+     V W+D+AGL+  K+  KE ++LP  
Sbjct: 13  GNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK 72

Query: 78  MPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLV 137
            P LFKG  +P  GILL+GPPGTGK+ LAKAVA++  STFF+V  S L SK  GESEKLV
Sbjct: 73  FPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLV 132

Query: 138 RALFETARARAPAVIFIDEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDKGVLV 195
           + LF  AR   P++IFID+VDA     G  E EA+RR++ ELL  M+GV  G+  +GVLV
Sbjct: 133 KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV--GNDSQGVLV 190

Query: 196 LAATNHPWDLDEALKRRFEKRI--------SPIQIIGLCLGEIR-KDPNVDVATLSKQLI 246
           L ATN PW LD A++RRFE+RI        +   +  + +G+        D  TL     
Sbjct: 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTE 250

Query: 247 GYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDR 306
           GYSGSDI  + ++ ++   R++     F  V+++  + R    +   D            
Sbjct: 251 GYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIE 310

Query: 307 I------VLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGSR 343
                   L    F +A +  R +V+   + K +++   +G  
Sbjct: 311 ADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score =  340 bits (872), Expect = e-115
 Identities = 126/370 (34%), Positives = 179/370 (48%), Gaps = 29/370 (7%)

Query: 1   MDTTKTNGATPKLAVVEKGKPRTGVPKVGPNRRANPELTALVEK---DIVQTDTGVGWDD 57
           +   +     P            G    G     +PE   L  +    IV     V W D
Sbjct: 76  LKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSD 135

Query: 58  IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ-HGST 116
           +AGL+  K+  KE ++LP   P LF G   PWRGILLFGPPGTGK+ LAKAVA++ + ST
Sbjct: 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 195

Query: 117 FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GSREHEATRRVR 174
           FF++  S L SK  GESEKLV+ LF+ AR   P++IFIDE+D+ C      E EA RR++
Sbjct: 196 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK 255

Query: 175 CELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRI--------SPIQIIGLC 226
            E L  M GV  G  + G+LVL ATN PW LD A++RRFEKRI        +   +  L 
Sbjct: 256 TEFLVQMQGV--GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLH 313

Query: 227 LGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGR 285
           LG  +      D   L ++  GYSG+DI  + ++ ++   R+V     F  V        
Sbjct: 314 LGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADP 373

Query: 286 NNIGAKGDDSKCQVAP---------LGSDRIV---LNRSHFERAKEKCRKSVDGALIRKY 333
           N I            P         +  D+++   ++     R+    + +V+   + K 
Sbjct: 374 NCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKL 433

Query: 334 KRWNELYGSR 343
           K++ E +G  
Sbjct: 434 KKFTEDFGQE 443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score =  235 bits (603), Expect = 2e-76
 Identities = 96/302 (31%), Positives = 154/302 (50%), Gaps = 31/302 (10%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V W+DI GL++VK+  +E +  P   P  F    + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 12  VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFC-----SGSRE 166
           +  + F ++    L +  +GESE  VR +F+ AR  AP V+F DE+D+       +    
Sbjct: 72  ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131

Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI------- 217
             A  RV  ++L+ MDG+ T    K V ++ ATN P  +D A+ R  R ++ I       
Sbjct: 132 GGAADRVINQILTEMDGMSTK---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188

Query: 218 -SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTG 276
            S + I+   L +     +VD+  L+K   G+SG+D+ ++CQ    +A RE I++     
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE--IR 246

Query: 277 VNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW 336
              +     + +  + DD   ++           R HFE A    R+SV    IRKY+ +
Sbjct: 247 RERERQTNPSAMEVEEDDPVPEIR----------RDHFEEAMRFARRSVSDNDIRKYEMF 296

Query: 337 NE 338
            +
Sbjct: 297 AQ 298

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score =  214 bits (548), Expect = 2e-68
 Identities = 92/291 (31%), Positives = 140/291 (48%), Gaps = 47/291 (16%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V W DI  L+++++     +L P   P  FK + L    G+LL GPPG GKTLLAKAVA+
Sbjct: 7   VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GSREHEA 169
           + G  F +V    L + + GESE+ VR +F+ A+  AP VIF DEVDA C     RE  A
Sbjct: 67  ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126

Query: 170 TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--------SP 219
           + RV  +LL+ MDG+      + V ++AATN P  +D A+ R  R +K +          
Sbjct: 127 SVRVVNQLLTEMDGL---EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183

Query: 220 IQIIGLCLGEIRK---DPNVDVATLSKQLI--GYSGSDIRDLCQEIILIAAREVIQNAGF 274
           + I+        K   D +V++  ++  L    Y+G+D+  L +E  + A R+ +     
Sbjct: 184 LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR--- 240

Query: 275 TGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV 325
                                  Q +      + ++  HFE A +K R S+
Sbjct: 241 -----------------------QKSGNEKGELKVSHKHFEEAFKKVRSSI 268

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score =  213 bits (545), Expect = 1e-65
 Identities = 101/323 (31%), Positives = 154/323 (47%), Gaps = 37/323 (11%)

Query: 15  VVEKGKPRTGVPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLL 74
            V +  P      V P+   + E   +  +D  ++   VG+DDI G        KE + L
Sbjct: 164 KVVETDPS-PYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVEL 222

Query: 75  PKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES 133
           P   P LFK I ++P RGILL+GPPGTGKTL+A+AVA++ G+ FF +    + SK  GES
Sbjct: 223 PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282

Query: 134 EKLVRALFETARARAPAVIFIDEVDAFCS--GSREHEATRRVRCELLSHMDGVGTGSGDK 191
           E  +R  FE A   APA+IFIDE+DA          E  RR+  +LL+ MDG+       
Sbjct: 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL---KQRA 339

Query: 192 GVLVLAATNHPWDLDEALKR--RFEKRIS-PI-------QIIGLCLGEIRKDPNVDVATL 241
            V+V+AATN P  +D AL+R  RF++ +   I       +I+ +    ++   +VD+  +
Sbjct: 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399

Query: 242 SKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAP 301
           + +  G+ G+D+  LC E  L A R+ +                       D     +  
Sbjct: 400 ANETHGHVGADLAALCSEAALQAIRKKMD--------------------LIDLEDETIDA 439

Query: 302 LGSDRIVLNRSHFERAKEKCRKS 324
              + + +    F  A  +   S
Sbjct: 440 EVMNSLAVTMDDFRWALSQSNPS 462

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score =  200 bits (510), Expect = 1e-62
 Identities = 86/235 (36%), Positives = 132/235 (56%), Gaps = 27/235 (11%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLAKAVA 110
           V ++DI GL+   Q  +E + LP   P+LF+  GI  P +GILL+GPPGTGKTLLAKAVA
Sbjct: 14  VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVA 72

Query: 111 SQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAF--------CS 162
           ++  +TF  V+ S L  K  GE   LV+ +F+ A+ +AP++IFIDE+DA           
Sbjct: 73  TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132

Query: 163 GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI--- 217
           G RE    +R   +LL+ MDG         V ++ ATN P  LD A+ R  RF++ I   
Sbjct: 133 GDRE---VQRTLMQLLAEMDGF---DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP 186

Query: 218 -----SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
                  ++I+ +   ++    +V++  ++K   G  G++++ +C E  + A RE
Sbjct: 187 APDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score =  154 bits (390), Expect = 9e-45
 Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 25/244 (10%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHG 114
           + + G         + ++         K   ++    + ++G  G GK+   + V  + G
Sbjct: 4   NKLDGFYIAPAFMDKLVVHI--TKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61

Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFC---SGSREH 167
                +    L S + GE  KL+R  +  A    R      +FI+++DA      G+ ++
Sbjct: 62  INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 121

Query: 168 EATRRVRCELLSH---------MDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKR 216
               ++    L +         + G+     +  V ++   N    L   L R  R EK 
Sbjct: 122 TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181

Query: 217 I---SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG 273
               +    IG+C G  R D NV    + K +  + G  I         +   EV +   
Sbjct: 182 YWAPTREDRIGVCTGIFRTD-NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240

Query: 274 FTGV 277
            TG+
Sbjct: 241 GTGI 244

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score =  143 bits (362), Expect = 6e-41
 Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 33/240 (13%)

Query: 52  GVGWDDIAGLDNVKQIFKET---LLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKA 108
           GV + D+AG+   K   +E    L  P+   QL   +  P +G LL GPPG GKTLLAKA
Sbjct: 2   GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKV--P-KGALLLGPPGCGKTLLAKA 58

Query: 109 VASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------- 159
           VA++    F  +  +       G     VR+LF+ ARARAP +++IDE+DA         
Sbjct: 59  VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118

Query: 160 FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI 217
               + E E T     +LL  MDG+GT      V+VLA+TN    LD AL R  R ++ +
Sbjct: 119 SGFSNTEEEQTLN---QLLVEMDGMGT---TDHVIVLASTNRADILDGALMRPGRLDRHV 172

Query: 218 S---P-----IQIIGLCLGEIRKDPNVDVAT--LSKQLIGYSGSDIRDLCQEIILIAARE 267
               P      +I    L  ++   +    +  L++   G+SG+DI ++C E  L AARE
Sbjct: 173 FIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score =  140 bits (354), Expect = 9e-40
 Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 26/242 (10%)

Query: 46  IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTL 104
           I      V + D+AG +  K+   E +   K  P+ +  +  +  +G+LL GPPGTGKTL
Sbjct: 1   INAEKPNVRFKDMAGNEEAKEEVVEIVDFLK-YPERYANLGAKIPKGVLLVGPPGTGKTL 59

Query: 105 LAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA----- 159
           LAKAVA +    FF++  SS      G     VR LFETA+ +AP++IFIDE+DA     
Sbjct: 60  LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119

Query: 160 ----FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RF 213
                 SG+ E E T     +LL+ MDG   GS +  V+VLAATN P  LD AL R  RF
Sbjct: 120 AAGGVVSGNDEREQTLN---QLLAEMDGF--GSENAPVIVLAATNRPEILDPALMRPGRF 174

Query: 214 EKRIS---P-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA 265
           ++++    P     ++I+ + +  ++   +V++  ++K   G +G+D+ ++  E  L+A 
Sbjct: 175 DRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 234

Query: 266 RE 267
           R 
Sbjct: 235 RN 236

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score =  136 bits (344), Expect = 2e-38
 Identities = 81/234 (34%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
             + D+AG D  K+   E +   +  P  F+ +  +  +G+L+ GPPGTGKTLLAKA+A 
Sbjct: 9   TTFADVAGCDEAKEEVAELVEYLR-EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSG 163
           +    FF +  S       G     VR +FE A+  AP +IFIDE+DA           G
Sbjct: 68  EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127

Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI---S 218
             E E T     ++L  MDG     G++G++V+AATN P  LD AL R  RF++++    
Sbjct: 128 HDEREQTLN---QMLVEMDGFE---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181

Query: 219 P-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           P      QI+ + +  +   P++D A +++   G+SG+D+ +L  E  L AAR 
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score =  136 bits (344), Expect = 2e-38
 Identities = 86/243 (35%), Positives = 122/243 (50%), Gaps = 26/243 (10%)

Query: 44  KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGK 102
             ++     V + D+AG +  K+  KE +   K  P  F  +  R  +G+LL GPPG GK
Sbjct: 4   GSVLTEAPKVTFKDVAGAEEAKEELKEIVEFLK-NPSRFHEMGARIPKGVLLVGPPGVGK 62

Query: 103 TLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--- 159
           T LA+AVA +    F     S       G     VR LFETA+  AP ++FIDE+DA   
Sbjct: 63  THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122

Query: 160 -----FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--R 212
                   G+ E E T     +LL  MDG      D  ++V+AATN P  LD AL R  R
Sbjct: 123 KRGSGVGGGNDEREQTLN---QLLVEMDGFE---KDTAIVVMAATNRPDILDPALLRPGR 176

Query: 213 FEKRI---SP-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIA 264
           F+++I   +P      QI+ +         +VD+A L+K+  G+ G+D+ +L  E  L+A
Sbjct: 177 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 236

Query: 265 ARE 267
           ARE
Sbjct: 237 ARE 239

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score =  135 bits (343), Expect = 6e-38
 Identities = 86/234 (36%), Positives = 120/234 (51%), Gaps = 26/234 (11%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V + D+AG +  K+  KE +   K  P  F  +  R  +G+LL GPPG GKT LA+AVA 
Sbjct: 37  VTFKDVAGAEEAKEELKEIVEFLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FCSG 163
           +    F     S       G     VR LFETA+  AP ++FIDE+DA           G
Sbjct: 96  EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155

Query: 164 SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI---S 218
           + E E T     +LL  MDG      D  ++V+AATN P  LD AL R  RF+++I   +
Sbjct: 156 NDEREQTLN---QLLVEMDGFE---KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 209

Query: 219 P-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           P      QI+ +         +VD+A L+K+  G+ G+D+ +L  E  L+AARE
Sbjct: 210 PDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score =  126 bits (317), Expect = 3e-34
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 23/222 (10%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112
              + I    +      +   L     +       P   +LL GPP +GKT LA  +A +
Sbjct: 30  YIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRT--PLVSVLLEGPPHSGKTALAAKIAEE 87

Query: 113 HGSTFFNVLPSSLTSKHYGESE-KLVRALFETARARAPAVIFIDEVDAFC----SGSREH 167
               F  +            ++ + ++ +F+ A     + + +D+++        G R  
Sbjct: 88  SNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRF- 146

Query: 168 EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI------SP 219
             +  V   LL  +         + +L++  T+    L   ++    F   I      + 
Sbjct: 147 --SNLVLQALLVLLK--KAPPQGRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIHVPNIATG 201

Query: 220 IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGS-DIRDLCQEI 260
            Q++   L  +    + +  T+++Q+ G      I+ L   I
Sbjct: 202 EQLLEA-LELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLI 242

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score =  124 bits (313), Expect = 5e-32
 Identities = 86/236 (36%), Positives = 120/236 (50%), Gaps = 30/236 (12%)

Query: 53  VGWDDIAGLDNVKQIFKET---LLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV 109
           V + D+AG +  K+  KE    L  P    ++   I  P +G+LL GPPG GKT LA+AV
Sbjct: 28  VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI--P-KGVLLVGPPGVGKTHLARAV 84

Query: 110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA--------FC 161
           A +    F     S       G     VR LFETA+  AP ++FIDE+DA          
Sbjct: 85  AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 144

Query: 162 SGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI-- 217
            G+ E E T     +LL  MDG      D  ++V+AATN P  LD AL R  RF+++I  
Sbjct: 145 GGNDEREQTLN---QLLVEMDGFE---KDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 198

Query: 218 -SP-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
            +P      QI+ +         +VD+A L+K+  G+ G+D+ +L  E  L+AARE
Sbjct: 199 DAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 254

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score =  123 bits (312), Expect = 6e-32
 Identities = 83/240 (34%), Positives = 121/240 (50%), Gaps = 30/240 (12%)

Query: 49  TDTGVGWDDIAGLDNVKQIFKET---LLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLL 105
            +  V + D+ G +   +  KE    L  P    ++   +  P +GILL GPPGTGKTLL
Sbjct: 9   GNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM--P-KGILLVGPPGTGKTLL 65

Query: 106 AKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDA------ 159
           A+AVA +    FF++  S       G     VR LF  A+A AP ++FIDE+DA      
Sbjct: 66  ARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125

Query: 160 --FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEK 215
                G  E E T     +LL  MDG       +G++V+AATN P  LD AL R  RF+K
Sbjct: 126 AGLGGGHDEREQTLN---QLLVEMDGFD---SKEGIIVMAATNRPDILDPALLRPGRFDK 179

Query: 216 RI---SP-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           +I    P      +I+ +         +V++  ++K+  G+ G+D+ +L  E  L+AARE
Sbjct: 180 KIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 76.7 bits (188), Expect = 4e-16
 Identities = 45/251 (17%), Positives = 79/251 (31%), Gaps = 41/251 (16%)

Query: 55  WDDIAGLDNVKQIFKE---TLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS 111
             ++ GL  VK   +E    LL+ +   +L      P   +   G PGTGKT +A  +A 
Sbjct: 30  DRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89

Query: 112 QH-------GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS 164
                         +V    L  ++ G +    + + + A      V+FIDE        
Sbjct: 90  LLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPD 146

Query: 165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE------ALKRRFEKRIS 218
            E +  +     LL  M+       ++  LV+    +   ++         + R    I 
Sbjct: 147 NERDYGQEAIEILLQVME------NNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIE 200

Query: 219 P--------IQIIGLCLGEIRKDPNVDVATLSKQLIGYS--------GSDIRDLCQEIIL 262
                     +I G  L +       +  T  +  IG             IR+      L
Sbjct: 201 FPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260

Query: 263 IAAREVIQNAG 273
             A  +   + 
Sbjct: 261 RQANRLFTASS 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 2e-12
 Identities = 50/304 (16%), Positives = 84/304 (27%), Gaps = 79/304 (25%)

Query: 61  LDNVKQIF-KETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHG--S 115
           L N  Q+F K  +   +   +L + +  LRP + +L+ G  G+GKT +A  V   +    
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 116 TF-FNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-REHEATRRV 173
              F +    L  K+    E ++  L +      P   +    D   +   R H     +
Sbjct: 179 KMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQAEL 234

Query: 174 RCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLC--LGEIR 231
           R  LL              +LVL    +    +      F            C  L    
Sbjct: 235 R-RLLKSKPYE------NCLLVLLNVQNAKAWNA-----FNLS---------CKIL---- 269

Query: 232 KDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGR----NN 287
                 + T  KQ+  +  +        I L            T     P + +      
Sbjct: 270 ------LTTRFKQVTDFLSAATT---THISLDHHSM-----TLT-----PDEVKSLLLKY 310

Query: 288 IGAKGDD---SKCQVAPL-----------GSDRI----VLNRSHFERAKEKCRKSVDGAL 329
           +  +  D         P            G         +N        E     ++ A 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 330 IRKY 333
            RK 
Sbjct: 371 YRKM 374

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 19/81 (23%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPA- 150
           ++L+GPPGTGKT LA+ +A    +    +  S++TS   G  E  +R   E AR    A 
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERI--SAVTS---GVKE--IREAIERARQNRNAG 105

Query: 151 ---VIFIDEV--------DAF 160
              ++F+DEV        DAF
Sbjct: 106 RRTILFVDEVHRFNKSQQDAF 126

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 42/225 (18%), Positives = 60/225 (26%), Gaps = 43/225 (19%)

Query: 56  DDIAGLDNVKQIFKETL-----LLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVA 110
             + G        K  L               K     +R  +L+GPPG GKT  A  VA
Sbjct: 39  QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98

Query: 111 SQHGSTF--FN-------------VLPSSLTSKHYGESEKLVRALFETARARAPAVIFID 155
            + G      N             V  +       G  +    A     +     VI +D
Sbjct: 99  QELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGK---HFVIIMD 155

Query: 156 EVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR---- 211
           EVD    G R      ++  +                 L+L              R    
Sbjct: 156 EVDGMSGGDR--GGVGQLA-QFCRKT---------STPLILICNERNLPKMRPFDRVCLD 203

Query: 212 -RFEKRISPIQIIGLCLGEIRKDPNVDVATLS-KQLIGYSGSDIR 254
            +F +R     I    L  I       +      +LI  +  DIR
Sbjct: 204 IQF-RRPDANSIKSR-LMTIAIREKFKLDPNVIDRLIQTTRGDIR 246

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 52.7 bits (126), Expect = 7e-08
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 55  WDDIAGLDNVK---QIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS 111
              + G +N +    +  E +   K+            R +LL GPPGTGKT LA A+A 
Sbjct: 36  ASGLVGQENAREACGVIVELIKSKKMAG----------RAVLLAGPPGTGKTALALAIAQ 85

Query: 112 QHGSTF-FNVLPSSLTSKHYGESEKLVRALFETA---RARAPAVIFIDEVD 158
           + GS   F  +  S       +  +++   F  A   R +    ++  EV 
Sbjct: 86  ELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVT 136

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 91  GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY---GESEKLVRALFETARAR 147
            IL+ GP G GKT +A+ +A    + F  V  +  T   Y        +         A 
Sbjct: 52  NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI 111

Query: 148 APA----VIFIDEVDAFCSGS 164
                  ++FIDE+D  C   
Sbjct: 112 DAVEQNGIVFIDEIDKICKKG 132

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112
           D++ G D V Q  K   +  K +P L           L  GPPGTGKT  A A+A  
Sbjct: 17  DEVVGQDEVIQRLKG-YVERKNIPHL-----------LFSGPPGTGKTATAIALARD 61

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112
           D++ G D V Q  K   +  K +P L           L  GPPGTGKT  A A+A  
Sbjct: 17  DEVVGQDEVIQRLKG-YVERKNIPHL-----------LFSGPPGTGKTATAIALARD 61

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112
           DDI G +++ +  K   +    MP L           L  GPPG GKT  A A+A +
Sbjct: 25  DDIVGQEHIVKRLKH-YVKTGSMPHL-----------LFAGPPGVGKTTAALALARE 69

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 92  ILLFGPPGTGKTLLAKAVASQ-HGSTFFNV------LPSSLTSKHYGESEKLVRALFETA 144
           + L GPPG  K+L+A+ +      +  F         P  +      ++ K         
Sbjct: 44  VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLT 103

Query: 145 RARAP--AVIFIDEV 157
               P   ++F+DE+
Sbjct: 104 SGYLPEAEIVFLDEI 118

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 230 IRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           +  +  +    +S+     +G+++R +C E  + A R 
Sbjct: 17  MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 54

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 221 QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
            I G    ++   P  D+ +L  +    SG+ I  + QE  L A R+
Sbjct: 5   LIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 221 QIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
            I      ++     VD+     +    SG+DI  +CQE  ++A RE
Sbjct: 8   LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
           IL+ G PGTGKT +A+ +A++        +   +   H+                    +
Sbjct: 13  ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTH---------I 63

Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR 211
           I   + D       E     R    +  H   +        V+VL        L E L +
Sbjct: 64  IEEKDEDRLLD-FMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHT--STEVLFERLTK 120

Query: 212 R--FEKRISP---IQIIGLCLGEIRK--DPNVDVATLSKQLIGYSGSDIRDLCQEII 261
           R   E + +     +I  +C  E R   + ++ +   +      +   +    +EI 
Sbjct: 121 RQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVREND-----TLEQMAATVEEIR 172

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Length = 199

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 31/149 (20%)

Query: 92  ILLFGPPGTGKTLLA----------KAVASQHG-------------STFFNVLPSSLTSK 128
            L+ G PG+GKTL            K   +                 T+       L   
Sbjct: 8   CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKS 67

Query: 129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS 188
              +        +        +++ +DE                    L +H        
Sbjct: 68  TDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTH-------- 119

Query: 189 GDKGVLVLAATNHPWDLDEALKRRFEKRI 217
             +G+ +   T  P  LD+ L+    K  
Sbjct: 120 RHQGIDIFVLTQGPKLLDQNLRTLVRKHY 148

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 31/237 (13%), Positives = 65/237 (27%), Gaps = 64/237 (27%)

Query: 80  QLFKGILRPWRG--ILLFGPPGTGKTLLAKAVASQ-----------------------HG 114
              +  ++       L  G  GTGKT ++K + ++                        G
Sbjct: 34  IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93

Query: 115 STFFNVL------PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHE 168
            T   VL       +  +   +G +        +       A+I++DEVD          
Sbjct: 94  GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDI 153

Query: 169 ATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW---DLDEALKRRFEKRI-----SPI 220
               V  +LL     +          V+  +N       ++  +       +        
Sbjct: 154 ----VLYQLLRSDANIS---------VIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAE 200

Query: 221 QIIGLCLGEIRKDPNVDVATLSKQLIGY-------SGSDIR---DLCQEIILIAARE 267
           Q+  +       +  +   T   +++ Y          D R   +L      +A+  
Sbjct: 201 QLKFIL--SKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 90  RGILLFGPPGTGKTLLA----KAVASQHG--STFFNV--LPSSL-TSKHYGESEKLVRAL 140
           +G+   G PG GKT LA    KA+  + G    FF+   L   L      G+  K ++ +
Sbjct: 39  KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV 98

Query: 141 FETARARAPAVIFIDEV 157
                  +P ++ +D++
Sbjct: 99  -----LNSPVLV-LDDL 109

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 8/38 (21%), Positives = 22/38 (57%)

Query: 230 IRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
           +     +++  +++ + G SG++++ +C E  + A RE
Sbjct: 27  MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	100.0
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	100.0
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	100.0
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	100.0
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	100.0
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	100.0
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	100.0
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	100.0
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	100.0
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	100.0
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	100.0
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.97
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.97
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.97
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.96
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.96
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.94
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.92
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.87
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.85
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.84
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.8
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.8
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.8
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.79
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.77
3pvs_A	447	Replication-associated recombination protein A; ma	99.75
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.75
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.74
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.74
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.73
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.73
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.73
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.71
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.71
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.71
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.7
3bos_A	242	Putative DNA replication factor; P-loop containing	99.7
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.69
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.69
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.69
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.67
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.67
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.67
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.66
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.66
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.66
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.66
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.66
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.65
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.65
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.64
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.64
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.63
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.62
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.62
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.61
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.61
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.56
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.54
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.52
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.51
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.51
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.49
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.47
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.45
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.44
3co5_A	143	Putative two-component system transcriptional RES	99.43
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	99.43
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	99.36
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.3
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.29
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.27
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.25
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	99.2
2krk_A	86	26S protease regulatory subunit 8; structural geno	99.19
3kw6_A	78	26S protease regulatory subunit 8; structural geno	99.11
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.09
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.02
3f8t_A	506	Predicted ATPase involved in replication control,	98.95
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.95
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.94
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.86
2qgz_A	308	Helicase loader, putative primosome component; str	98.85
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.83
2fna_A	357	Conserved hypothetical protein; structural genomic	98.82
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	98.69
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.59
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	98.57
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.52
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.48
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.35
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.16
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.15
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.13
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.12
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.1
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.07
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.01
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	98.01
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.01
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.99
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.97
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.91
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.9
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.87
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.87
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.87
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.86
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.84
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.8
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.8
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.8
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.76
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.76
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.76
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.74
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.68
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.66
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.66
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.62
3io5_A	333	Recombination and repair protein; storage dimer, i	97.61
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.61
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.59
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.58
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.58
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.58
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.56
1via_A	175	Shikimate kinase; structural genomics, transferase	97.55
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.55
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.54
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.54
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.53
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.52
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.51
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.49
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.49
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.49
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.49
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.49
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.49
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.47
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.46
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.46
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.46
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.45
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.45
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.44
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.44
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.41
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.41
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.41
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.4
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.4
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.4
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.38
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.38
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.38
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.38
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.38
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.37
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.37
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.37
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.37
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.36
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.35
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.35
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.35
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.34
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.33
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.33
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.33
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.3
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.27
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.24
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.24
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.24
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.24
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.23
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.22
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.22
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.21
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.21
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	97.19
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.19
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.18
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	97.16
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.16
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.15
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.15
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.13
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.11
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.11
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.09
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.08
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.08
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.07
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.06
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.04
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.03
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.01
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.01
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	97.0
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.0
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.99
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.97
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.96
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.95
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.94
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.9
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.9
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.9
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.87
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.86
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	96.85
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.85
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.84
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.83
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.81
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.8
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.79
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.79
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.78
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.77
3b6e_A	216	Interferon-induced helicase C domain-containing P;	96.76
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.76
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.75
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.74
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.73
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.73
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.72
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.71
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.68
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.68
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.65
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.62
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.61
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.56
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.54
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.53
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.52
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.52
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.51
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.51
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.51
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.5
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.46
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.43
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.4
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.4
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.39
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.36
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.36
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.34
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.34
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.33
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.32
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.31
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	96.3
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.28
1oyw_A	523	RECQ helicase, ATP-dependent DNA helicase; winged	96.25
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.23
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.2
2xxa_A	433	Signal recognition particle protein; protein trans	96.2
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.2
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.17
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.17
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.17
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.12
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.12
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	96.11
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.11
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.08
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.99
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	95.97
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.97
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.91
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.89
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.87
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.84
2og2_A	359	Putative signal recognition particle receptor; nuc	95.82
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.82
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.77
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.74
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.73
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.72
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.71
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	95.7
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.68
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.66
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.64
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.61
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.6
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.6
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.57
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.55
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.54
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.53
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.51
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.49
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.47
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.45
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.43
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.43
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.41
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.4
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.4
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.37
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.36
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.35
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.34
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.33
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.31
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.29
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.28
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.27
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.27
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.27
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.24
3h1t_A	590	Type I site-specific restriction-modification syst	95.24
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.23
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.22
1g6h_A	257	High-affinity branched-chain amino acid transport	95.21
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.2
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	95.2
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.19
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.17
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.17
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.17
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.16
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.16
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.16
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.15
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.14
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	95.13
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.13
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.1
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.08
2v1x_A	591	ATP-dependent DNA helicase Q1; DNA strand annealin	95.08
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.06
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.06
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.04
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.03
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.03
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.0
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.99
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.96
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.95
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.93
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.93
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	94.9
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.87
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.82
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.82
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.79
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.74
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	94.73
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.71
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	94.65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.63
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.6
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	94.59
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.58
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	94.58
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.54
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.54
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.54
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.54
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.52
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.51
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	94.51
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.45
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.44
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.44
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.4
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.37
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.36
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.36
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.36
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.35
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.32
3tbk_A	555	RIG-I helicase domain; DECH helicase, ATP binding,	94.31
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.29
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.28
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.28
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.27
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.21
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.21
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.17
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.17
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	94.16
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.16
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	94.14
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.09
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.09
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.08
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	94.08
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.06
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.04
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.04
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.01
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.99
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	93.98
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.96
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.94
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.93
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.9
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	93.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.89
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.89
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.88
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.85
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.81
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.8
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.8
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	93.79
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.77
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.75
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.74
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.74
4a2p_A	556	RIG-I, retinoic acid inducible protein I; hydrolas	93.73
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	93.69
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.69
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.69
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.69
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	93.69
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.68
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.67
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.65
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.63
3dmq_A	968	RNA polymerase-associated protein RAPA; SWF2/SNF2,	93.62
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.62
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	93.61
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.61
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.59
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.58
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.57
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	93.54
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.51
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.47
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	93.45
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	93.45
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	93.44
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	93.44
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	93.43
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.42
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	93.41
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	93.41
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.41
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	93.4
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	93.4
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.4
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	93.4
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	93.4
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.39
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.38
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	93.37
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	93.36
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	93.35
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.34
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.3
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.29
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.29
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	93.28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	93.27
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	93.25
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	93.24
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	93.23
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	93.13
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.12

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-48  Score=362.50  Aligned_cols=256  Identities=32%  Similarity=0.503  Sum_probs=223.7

Q ss_pred             HhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          41 LVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        41 ~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .+....+.+.|.++|+||+|++++++.|++.+.+|+.+|+++.. ++.+|+|+|||||||||||++|+++|++++.+|+.
T Consensus       133 ~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            34556678889999999999999999999999999999999986 47889999999999999999999999999999999


Q ss_pred             EcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVL  194 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  194 (343)
                      ++++++.++|+|++++.++.+|..|...+||||||||+|.+++...     ......++++.|+..|+++....   +|+
T Consensus       213 v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---~V~  289 (405)
T 4b4t_J          213 VSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK---NIK  289 (405)
T ss_dssp             EEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC---CEE
T ss_pred             EEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC---CeE
Confidence            9999999999999999999999999999999999999999997422     12344678899999999886643   899


Q ss_pred             EEEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809         195 VLAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a  264 (343)
                      ||+|||+|+.||++++|  ||++.|+        |.+||+.+++...+..++|++.||+.|+||||+||.++|++|.+.|
T Consensus       290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A  369 (405)
T 4b4t_J          290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA  369 (405)
T ss_dssp             EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred             EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999  9999998        9999999999998889999999999999999999999999999999


Q ss_pred             HHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy7809         265 AREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRW  336 (343)
Q Consensus       265 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~  336 (343)
                      +++...                                     .|+.+||+.|++++.+...+..+..++.|
T Consensus       370 ir~~~~-------------------------------------~vt~~Df~~Al~~v~~~~~~~~~s~~k~~  404 (405)
T 4b4t_J          370 LRERRI-------------------------------------HVTQEDFELAVGKVMNKNQETAISVAKLF  404 (405)
T ss_dssp             HHTTCS-------------------------------------BCCHHHHHHHHHHHHHHHTCC--------
T ss_pred             HHcCCC-------------------------------------CcCHHHHHHHHHHHhCccccccchhHhhh
Confidence            876321                                     29999999999998765555555555555

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-46  Score=351.69  Aligned_cols=251  Identities=31%  Similarity=0.537  Sum_probs=216.7

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      +.+.|.++|+||+|++++|+.|++.+.+|+.+|+++..+ +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus       200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L  279 (467)
T 4b4t_H          200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL  279 (467)
T ss_dssp             EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred             ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence            567889999999999999999999999999999999864 7899999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      .++++|++++.++.+|..|...+||||||||+|.++....     ......+.+..++..|++....   .+|+||+|||
T Consensus       280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~---~~ViVIaATN  356 (467)
T 4b4t_H          280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR---GNIKVMFATN  356 (467)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT---TTEEEEEECS
T ss_pred             hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC---CcEEEEeCCC
Confidence            9999999999999999999999999999999999987432     1233456788889999887654   3899999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      +|+.||++++|  ||++.|+        |.+||+.+++...+..+++++.||+.|+||||+||.++|++|.+.|+++...
T Consensus       357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~  436 (467)
T 4b4t_H          357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK  436 (467)
T ss_dssp             CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999  9999998        9999999999998889999999999999999999999999999999987421


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSV-DGALIRKYKRWN  337 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~-~~~~~~~~~~~~  337 (343)
                                                           .|+.+||..|++++.+.. ..+....|.+|+
T Consensus       437 -------------------------------------~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n  467 (467)
T 4b4t_H          437 -------------------------------------VATEKDFLKAVDKVISGYKKFSSTSRYMQYN  467 (467)
T ss_dssp             -------------------------------------SBCHHHHHHHHHHHHHHHCC-----------
T ss_pred             -------------------------------------ccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence                                                 299999999999885432 223456788874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-46  Score=351.26  Aligned_cols=244  Identities=35%  Similarity=0.562  Sum_probs=219.9

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+.+.|.++|+||+|++++++.|.+.+.+|+.+|+++... +.+++|+|||||||||||++|+++|.+++.+|+.+++++
T Consensus       172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~  251 (437)
T 4b4t_I          172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE  251 (437)
T ss_dssp             EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred             eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence            4567899999999999999999999999999999999865 788999999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      +.++++|++++.++.+|..|...+||||||||+|.++....     ......+.+..|+..++++....   +++||+||
T Consensus       252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~---~ViVIaAT  328 (437)
T 4b4t_I          252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG---DVKVIMAT  328 (437)
T ss_dssp             GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS---SEEEEEEE
T ss_pred             hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC---CEEEEEeC
Confidence            99999999999999999999999999999999999997432     12344678889999999876544   89999999


Q ss_pred             CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      |+|+.||++++|  ||+..|+        |.+||+.+++...+..++|++.||..|+||||+||.++|++|.+.|+++..
T Consensus       329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~  408 (437)
T 4b4t_I          329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR  408 (437)
T ss_dssp             SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999  9999887        999999999999888999999999999999999999999999999987632


Q ss_pred             HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHH
Q psy7809         270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGAL  329 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~  329 (343)
                      .                              .       |+.+||..|++++.|+.+.++
T Consensus       409 ~------------------------------~-------It~eDf~~Al~rv~~~~~~e~  431 (437)
T 4b4t_I          409 M------------------------------Q-------VTAEDFKQAKERVMKNKVEEN  431 (437)
T ss_dssp             S------------------------------C-------BCHHHHHHHHHHHHHHHCCCS
T ss_pred             C------------------------------c-------cCHHHHHHHHHHHhCCCChhh
Confidence            1                              2       999999999999877655443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-46  Score=351.15  Aligned_cols=253  Identities=32%  Similarity=0.514  Sum_probs=221.3

Q ss_pred             hhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          42 VEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        42 ~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +....+.+.|.++|+||+|++++++.|.+.+.+|+.+|+++... +.+|+|+|||||||||||++|+++|++++.+|+.+
T Consensus       167 ~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          167 VYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             hheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34455677899999999999999999999999999999999864 78999999999999999999999999999999999


Q ss_pred             cCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEE
Q psy7809         121 LPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLV  195 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v  195 (343)
                      +++++.++|+|++...++.+|..|...+||||||||+|.++....     ......+.++.|+..|+++....   +++|
T Consensus       247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---~viv  323 (437)
T 4b4t_L          247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG---QTKI  323 (437)
T ss_dssp             EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT---SSEE
T ss_pred             ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC---CeEE
Confidence            999999999999999999999999999999999999999987422     22344678889999999886643   8999


Q ss_pred             EEecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         196 LAATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       196 I~ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      |+|||+|+.||++++|  ||++.|+        |.+||+.++.......++|++.||+.|+||||+||.++|+.|.+.|+
T Consensus       324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai  403 (437)
T 4b4t_L          324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI  403 (437)
T ss_dssp             EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998  7999987        99999999999988899999999999999999999999999999998


Q ss_pred             HHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809         266 REVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK  334 (343)
Q Consensus       266 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~  334 (343)
                      ++...                              .       |+.+||..|++++.|+...+...+|+
T Consensus       404 r~~~~------------------------------~-------i~~~d~~~Al~~v~~~~k~e~~~e~~  435 (437)
T 4b4t_L          404 RDDRD------------------------------H-------INPDDLMKAVRKVAEVKKLEGTIEYQ  435 (437)
T ss_dssp             HTTCS------------------------------S-------BCHHHHHHHHHHHHHTCC--------
T ss_pred             HcCCC------------------------------C-------CCHHHHHHHHHHHHhccCcccchhhh
Confidence            76321                              2       99999999999998876654444443

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-45  Score=347.72  Aligned_cols=241  Identities=32%  Similarity=0.512  Sum_probs=219.2

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+.+.|.++|+||+|++++|+.|.+.+.+|+.+|+++... +.+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus       171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~  250 (434)
T 4b4t_M          171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ  250 (434)
T ss_dssp             EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred             ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence            4567899999999999999999999999999999998864 788999999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCch-----hhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREH-----EATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~-----~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      +.++++|.+++.++.+|..|...+||||||||+|.+++.....     ....+.+..|+..|+++....   +|+||+||
T Consensus       251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~---~ViVIaaT  327 (434)
T 4b4t_M          251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD---RVKVLAAT  327 (434)
T ss_dssp             GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC---SSEEEEEC
T ss_pred             hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC---CEEEEEeC
Confidence            9999999999999999999999999999999999998753322     233567888999999886644   89999999


Q ss_pred             CCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       200 n~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      |+|+.||++++|  ||++.|+        |.+||+.+++......+++++.||+.|+||||+||.++|++|.+.|+++..
T Consensus       328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~  407 (434)
T 4b4t_M          328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ  407 (434)
T ss_dssp             SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999  9999997        999999999999888999999999999999999999999999999987632


Q ss_pred             HhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCC
Q psy7809         270 QNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVD  326 (343)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~  326 (343)
                      .                              .       |+.+||.+|+++++|+.+
T Consensus       408 ~------------------------------~-------i~~~Df~~Al~~v~~~~~  427 (434)
T 4b4t_M          408 S------------------------------S-------VKHEDFVEGISEVQARKS  427 (434)
T ss_dssp             S------------------------------S-------BCHHHHHHHHHSCSSSCC
T ss_pred             C------------------------------C-------cCHHHHHHHHHHHhCCCC
Confidence            1                              2       999999999999998865

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=1e-46  Score=380.38  Aligned_cols=282  Identities=34%  Similarity=0.552  Sum_probs=195.0

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      +.....|.++|++++|++++++.|.+.+.+|+.++.++..+ ..+++++|||||||||||++|+++|.+++.+|+.++.+
T Consensus       466 ~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~  545 (806)
T 3cf2_A          466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP  545 (806)
T ss_dssp             CCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred             cccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc
Confidence            34566788999999999999999999999999999998764 78899999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ++.++|+|++++.++.+|..|+..+||||||||+|.+++...     .+....+++++|+.+|+++....   +|+||++
T Consensus       546 ~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~---~V~vi~a  622 (806)
T 3cf2_A          546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK---NVFIIGA  622 (806)
T ss_dssp             HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS---SEEEECC
T ss_pred             hhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC---CEEEEEe
Confidence            999999999999999999999999999999999999997432     34456789999999999987644   8999999


Q ss_pred             cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      ||+|+.||++++|  ||++.++        |.+||+.++++..+..++|++.||+.|+||||+||.++|++|.+.|+++.
T Consensus       623 TN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~  702 (806)
T 3cf2_A          623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES  702 (806)
T ss_dssp             -CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred             CCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999  9999998        99999999999988899999999999999999999999999999999998


Q ss_pred             HHhccccCCC-CCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy7809         269 IQNAGFTGVN-SKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS  342 (343)
Q Consensus       269 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~~  342 (343)
                      .......... ...+..            ... ........|+.+||++|++.++||++.++++.|++|+++|+.
T Consensus       703 ~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~  764 (806)
T 3cf2_A          703 IESEIRRERERQTNPSA------------MEV-EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ  764 (806)
T ss_dssp             HC------------------------------------CCC----CCTTTC---------------CCCC-----
T ss_pred             HHhhhhhhhhhccCccc------------ccc-ccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence            7522111000 000000            000 011112349999999999999999999999999999999874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.8e-44  Score=328.79  Aligned_cols=289  Identities=41%  Similarity=0.696  Sum_probs=240.0

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSS  124 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~  124 (343)
                      ++...|.++|+||+|++++++.|.+.+.+|+.++.++.+...+++++|||||||||||++|+++|+++ +.+++.+++.+
T Consensus         2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~   81 (322)
T 1xwi_A            2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD   81 (322)
T ss_dssp             CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred             eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence            45677899999999999999999999999999999888766788999999999999999999999999 89999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      +...+.+.....++.+|..+....|+||||||+|.+++...  ......++.+.|+..++++...  ..+++||++||.+
T Consensus        82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--~~~v~vI~atn~~  159 (322)
T 1xwi_A           82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--NDGILVLGATNIP  159 (322)
T ss_dssp             SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC--CTTEEEEEEESCT
T ss_pred             HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc--CCCEEEEEecCCc
Confidence            99999999999999999999999999999999999987432  3455678899999999887532  3489999999999


Q ss_pred             CCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809         203 WDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG  273 (343)
Q Consensus       203 ~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~  273 (343)
                      +.++++++|||+..+.        |..|++.++..... ..+.++..||+.|+||+++||..+|++|...|+++.....+
T Consensus       160 ~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~  239 (322)
T 1xwi_A          160 WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH  239 (322)
T ss_dssp             TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSE
T ss_pred             ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999987776        99999999887643 36788999999999999999999999999999999886544


Q ss_pred             ccCCCCCCC----------------CCC---CCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809         274 FTGVNSKPP----------------DGR---NNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK  334 (343)
Q Consensus       274 ~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~  334 (343)
                      +......+.                ...   +..+...+...+.       ...|+.+||..|++.++|++++++++.|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~df~~al~~~~ps~~~~~~~~~~  312 (322)
T 1xwi_A          240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLL-------EPVVSMSDMLRSLSNTKPTVNEHDLLKLK  312 (322)
T ss_dssp             EEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBC-------CCCBCHHHHHHHHHTCCCSCCHHHHHHHH
T ss_pred             hhhhccccccccccccccccccccccccchhhcccccccccccc-------CCCcCHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            322111000                000   0000011111112       23599999999999999999999999999


Q ss_pred             HHHHHhCCC
Q psy7809         335 RWNELYGSR  343 (343)
Q Consensus       335 ~~~~~~~~~  343 (343)
                      +|+++||+.
T Consensus       313 ~~~~~~~~~  321 (322)
T 1xwi_A          313 KFTEDFGQE  321 (322)
T ss_dssp             HHHHTTCSC
T ss_pred             HHHHHHccC
Confidence            999999974

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-45  Score=345.75  Aligned_cols=246  Identities=35%  Similarity=0.514  Sum_probs=219.5

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+.+.|.++|+||+|++++|+.|.+.+.+|+.+|+++... +.+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus       162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~  241 (428)
T 4b4t_K          162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE  241 (428)
T ss_dssp             EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred             cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence            3567889999999999999999999999999999999864 789999999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      +.++++|.++..++.+|..|...+||||||||+|.++...     .......++++.|+..|+++....   +++||+||
T Consensus       242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~---~v~vI~aT  318 (428)
T 4b4t_K          242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST---NVKVIMAT  318 (428)
T ss_dssp             TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC---SEEEEEEE
T ss_pred             hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC---CEEEEEec
Confidence            9999999999999999999999999999999999998742     123345688999999999987644   89999999


Q ss_pred             CCCCCCCHHHhc--cccCcch---------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKR--RFEKRIS---------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       200 n~~~~l~~~l~~--rf~~~i~---------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                      |+|+.||++++|  ||+..|.         |..||+.+++...+..++|++.||..|+||||+||.++|++|.+.|+++.
T Consensus       319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~  398 (428)
T 4b4t_K          319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN  398 (428)
T ss_dssp             SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            999999999999  9988774         99999999999988899999999999999999999999999999998763


Q ss_pred             HHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHh-cCCCCCHHHHH
Q psy7809         269 IQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEK-CRKSVDGALIR  331 (343)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~-~~p~~~~~~~~  331 (343)
                      ..                                     .|+.+||.+|+.+ ++++.+.+.++
T Consensus       399 ~~-------------------------------------~i~~~d~~~A~~~~~~~~~~~~~~d  425 (428)
T 4b4t_K          399 RY-------------------------------------VILQSDLEEAYATQVKTDNTVDKFD  425 (428)
T ss_dssp             CS-------------------------------------SBCHHHHHHHHHHHSCSCCCSSCCC
T ss_pred             CC-------------------------------------CCCHHHHHHHHHHhhCccCCccHhh
Confidence            21                                     2999999999976 45665544433

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=100.00  E-value=3.9e-43  Score=337.86  Aligned_cols=308  Identities=39%  Similarity=0.659  Sum_probs=232.3

Q ss_pred             CCCCCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHH
Q psy7809          27 KVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      +.+.+......+.+.+...++...|..+|++|+|++.+++.|.+.+.+|+.++.++.+...+++++||+||||||||++|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA  184 (444)
T 2zan_A          105 EAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA  184 (444)
T ss_dssp             -------------------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred             cccccchHHHHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence            34445556666788888889999999999999999999999999999888888887766678899999999999999999


Q ss_pred             HHHHHHh-CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhccc
Q psy7809         107 KAVASQH-GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDG  183 (343)
Q Consensus       107 ~~ia~~l-~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~  183 (343)
                      +++|.++ +.+|+.+++.++...+.+.....++.+|..+....|+||||||+|.+++..  .......++.+.|+..+++
T Consensus       185 ~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~  264 (444)
T 2zan_A          185 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG  264 (444)
T ss_dssp             HHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred             HHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence            9999999 899999999999999888888889999999999999999999999998642  2345567889999999987


Q ss_pred             CCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809         184 VGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR  254 (343)
Q Consensus       184 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~  254 (343)
                      ....  ..+++||++||.++.++++++|||+..+.        |..|++.++..... ..+.+++.||..++||+++||.
T Consensus       265 ~~~~--~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~  342 (444)
T 2zan_A          265 VGVD--NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS  342 (444)
T ss_dssp             SSCC--CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH
T ss_pred             cccC--CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence            6532  34799999999999999999999987765        99999999877643 3678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCCCCCCCCC-------------------CCCCCCCCCccccCCCCCCcccccHHHHH
Q psy7809         255 DLCQEIILIAAREVIQNAGFTGVNSKPPDGRN-------------------NIGAKGDDSKCQVAPLGSDRIVLNRSHFE  315 (343)
Q Consensus       255 ~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~lt~~df~  315 (343)
                      .+|++|+..|+++.....+|...........+                   ..+...+...+.       ...||.+||.
T Consensus       343 ~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~df~  415 (444)
T 2zan_A          343 IIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLL-------EPVVSMWDML  415 (444)
T ss_dssp             HHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBC-------CCCEEHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhcc-------CCccCHHHHH
Confidence            99999999999998876555432211110000                   000011111122       2359999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q psy7809         316 RAKEKCRKSVDGALIRKYKRWNELYGSR  343 (343)
Q Consensus       316 ~Al~~~~p~~~~~~~~~~~~~~~~~~~~  343 (343)
                      .|++.++|++++++++.|++|+++||+.
T Consensus       416 ~a~~~~~ps~~~~~~~~~~~~~~~~~~~  443 (444)
T 2zan_A          416 RSLSSTKPTVNEQDLLKLKKFTEDFGQE  443 (444)
T ss_dssp             HHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999974

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=100.00  E-value=7.2e-43  Score=326.89  Aligned_cols=300  Identities=39%  Similarity=0.655  Sum_probs=228.6

Q ss_pred             ChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          35 NPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ...+.+.+...+....+..+|++|+|++.+++.|.+.+..++..+.++.....++.++||+||||||||++|+++|++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           30 NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             -----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            44556667777788899999999999999999999999999888888887777889999999999999999999999999


Q ss_pred             CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       115 ~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      .+++.+++.++...+.+.....++.+|..+....|+||||||+|.+...  ........++.+.|+..++++...  ..+
T Consensus       110 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~--~~~  187 (355)
T 2qp9_X          110 STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--SQG  187 (355)
T ss_dssp             CEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----CC
T ss_pred             CCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc--CCC
Confidence            9999999999999999999999999999999999999999999999864  223445677888999999876532  347


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILI  263 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~  263 (343)
                      ++||++||.++.|+++++|||+..+.        |..||+.++..... ..+.+++.||..++||+++||..+|++|.+.
T Consensus       188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~  267 (355)
T 2qp9_X          188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ  267 (355)
T ss_dssp             EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999987776        99999999887643 3678899999999999999999999999999


Q ss_pred             HHHHHHHhccccCCCCC----------CCCCC---CCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHH
Q psy7809         264 AAREVIQNAGFTGVNSK----------PPDGR---NNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALI  330 (343)
Q Consensus       264 a~~r~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~  330 (343)
                      |+++.....++......          ++...   ...+.......+.       ...|+.+||..|++.++|+++.+++
T Consensus       268 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~df~~Al~~~~ps~~~~~~  340 (355)
T 2qp9_X          268 PIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELK-------EPDLTIKDFLKAIKSTRPTVNEDDL  340 (355)
T ss_dssp             HHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBC-------CCCBCHHHHHHHHHHSCCSSCHHHH
T ss_pred             HHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccc-------cCCccHHHHHHHHHHcCCCCCHHHH
Confidence            99998765443222110          00000   0000011111112       2359999999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q psy7809         331 RKYKRWNELYGSR  343 (343)
Q Consensus       331 ~~~~~~~~~~~~~  343 (343)
                      +.|++|+++||+.
T Consensus       341 ~~~~~~~~~~~~~  353 (355)
T 2qp9_X          341 LKQEQFTRDFGQE  353 (355)
T ss_dssp             HHHHHHHHHTC--
T ss_pred             HHHHHHHHHhccC
Confidence            9999999999963

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=100.00  E-value=7.8e-43  Score=322.76  Aligned_cols=290  Identities=40%  Similarity=0.654  Sum_probs=239.4

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .++.+.|..+|++|+|++.+++.|.+.+..+..++.++.....++.++||+||||||||++|+++|++++.+++.+++.+
T Consensus         7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~   86 (322)
T 3eie_A            7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD   86 (322)
T ss_dssp             CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred             ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence            56778999999999999999999999999998888888777778899999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      +...+.+.....++.+|..+....|+||||||+|.+....  .......++.+.++..+++....  ..+++||++||.+
T Consensus        87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vi~atn~~  164 (322)
T 3eie_A           87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--SQGVLVLGATNIP  164 (322)
T ss_dssp             HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS--CCCEEEEEEESCG
T ss_pred             HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc--CCceEEEEecCCh
Confidence            9999999999999999999999999999999999998742  23445667888999999877432  3479999999999


Q ss_pred             CCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809         203 WDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG  273 (343)
Q Consensus       203 ~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~  273 (343)
                      +.|++++++||+..+.        |.+|++.++..... ..+.++..||..++||+++||..+|++|...|+++.....+
T Consensus       165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~  244 (322)
T 3eie_A          165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH  244 (322)
T ss_dssp             GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred             hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999988776        99999999987743 36788999999999999999999999999999999987554


Q ss_pred             ccCCCCCCCC----------CCC---CCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q psy7809         274 FTGVNSKPPD----------GRN---NIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELY  340 (343)
Q Consensus       274 ~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~  340 (343)
                      +..+......          ...   ..........+.       ...||.+||.+|++.++|+++.++++.|++|+++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~  317 (322)
T 3eie_A          245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELK-------EPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDF  317 (322)
T ss_dssp             EEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBC-------CCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccccccccc-------CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence            4333211110          000   000011111112       24599999999999999999999999999999999


Q ss_pred             CCC
Q psy7809         341 GSR  343 (343)
Q Consensus       341 ~~~  343 (343)
                      |+.
T Consensus       318 ~~~  320 (322)
T 3eie_A          318 GQE  320 (322)
T ss_dssp             C--
T ss_pred             cCC
Confidence            973

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=100.00  E-value=4.9e-40  Score=301.18  Aligned_cols=283  Identities=33%  Similarity=0.544  Sum_probs=231.4

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ++++...|..+|++|+|++++++.|.+.+..++.+++.+... ..++.++||+||||||||++|+++|.+++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~   82 (301)
T 3cf0_A            3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   82 (301)
T ss_dssp             CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence            567778899999999999999999999999998888887754 5788999999999999999999999999999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC-----CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809         123 SSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS-----REHEATRRVRCELLSHMDGVGTGSGDKGVLVLA  197 (343)
Q Consensus       123 ~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~  197 (343)
                      .++...+.+.....+..+|..+....|+||||||+|.+....     .......++.+.|+..++++...   .+++||+
T Consensus        83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~---~~v~vi~  159 (301)
T 3cf0_A           83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---KNVFIIG  159 (301)
T ss_dssp             HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT---SSEEEEE
T ss_pred             HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC---CCEEEEE
Confidence            999888888888889999999999999999999999987521     11233456788899999877543   4799999


Q ss_pred             ecCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809         198 ATNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       198 ttn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r  267 (343)
                      +||.++.+++++++  ||+..++        |.+|++.++.......+++++.++..+.||+|+||.++|++|+..|.++
T Consensus       160 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~  239 (301)
T 3cf0_A          160 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE  239 (301)
T ss_dssp             EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998  9987766        8899999998887778899999999999999999999999999999988


Q ss_pred             HHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q psy7809         268 VIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYG  341 (343)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~  341 (343)
                      ...............         .+.....   .......|+.+||..|++.++|+++.++++.|++|+++|.
T Consensus       240 ~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~  301 (301)
T 3cf0_A          240 SIESEIRRERERQTN---------PSAMEVE---EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ  301 (301)
T ss_dssp             HHHHHC--------------------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhhhhcccc---------ccccccc---ccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence            764322110000000         0000000   0011234999999999999999999999999999999983

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=5e-40  Score=331.71  Aligned_cols=254  Identities=37%  Similarity=0.592  Sum_probs=222.3

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      ...+.++|+||+|++++++.|++.+.+|+.+|+++..+ ..+|+|||||||||||||+||+++|++++.+++.+++.++.
T Consensus       196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~  275 (806)
T 3cf2_A          196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM  275 (806)
T ss_dssp             CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred             ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence            34577999999999999999999999999999999875 68999999999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809         127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD  204 (343)
Q Consensus       127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~  204 (343)
                      +++.|+++..++.+|..|..++||||||||+|.|++.  ...++...++.++|+..|+++....   +|+||++||+++.
T Consensus       276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~---~V~VIaaTN~~d~  352 (806)
T 3cf2_A          276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---HVIVMAATNRPNS  352 (806)
T ss_dssp             SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG---CEEEEEECSSTTT
T ss_pred             cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC---CEEEEEecCChhh
Confidence            9999999999999999999999999999999999974  3344566789999999999986644   8999999999999


Q ss_pred             CCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccc
Q psy7809         205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGF  274 (343)
Q Consensus       205 l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~  274 (343)
                      ||++++|  ||++.|.        |.+||+.++.......++++..||..|+||+++||..+|++|.+.|++|.......
T Consensus       353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~  432 (806)
T 3cf2_A          353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL  432 (806)
T ss_dssp             SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence            9999999  9999887        99999999999988899999999999999999999999999999999988752211


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         275 TGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                      ...             ...       ......+.|+.+||..|++.++|+
T Consensus       433 ~~~-------------~~~-------~e~~~~~~v~~~Df~~Al~~~~ps  462 (806)
T 3cf2_A          433 EDE-------------TID-------AEVMNSLAVTMDDFRWALSQSNPS  462 (806)
T ss_dssp             TCC-------------CCS-------HHHHHHCEECTTHHHHHHSSSSCC
T ss_pred             ccc-------------ccc-------hhhhccceeeHHHHHHHHHhCCCc
Confidence            100             000       000123458999999999999865

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=100.00  E-value=7.7e-39  Score=303.43  Aligned_cols=292  Identities=42%  Similarity=0.651  Sum_probs=225.5

Q ss_pred             CCCCCCCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHH
Q psy7809          25 VPKVGPNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTL  104 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~  104 (343)
                      ..+.+.....+..+.+++.+.++.+.++.+|++|+|++.+++.|.+.+..+..++.++.....++.++||+||||||||+
T Consensus        84 ~kd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~  163 (389)
T 3vfd_A           84 KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTM  163 (389)
T ss_dssp             -------------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHH
T ss_pred             cccccccccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHH
Confidence            45566677777788888999999999999999999999999999999988887777776666678899999999999999


Q ss_pred             HHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcc
Q psy7809         105 LAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMD  182 (343)
Q Consensus       105 la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~  182 (343)
                      +|+++|.+++.+|+.++|.++...+.+.....+..+|..+....|+||||||||.++....  ......++...|+..++
T Consensus       164 la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~  243 (389)
T 3vfd_A          164 LAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD  243 (389)
T ss_dssp             HHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999976422  23446778888999888


Q ss_pred             cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHH
Q psy7809         183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDI  253 (343)
Q Consensus       183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di  253 (343)
                      +..... ..+++||++||.++.+++++++||...+.        |..||+.++..... ..+.++..|+..+.||++++|
T Consensus       244 ~~~~~~-~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l  322 (389)
T 3vfd_A          244 GVQSAG-DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDL  322 (389)
T ss_dssp             HHC------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred             cccccC-CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence            765432 44799999999999999999999986665        88999988876532 356678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHH
Q psy7809         254 RDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKY  333 (343)
Q Consensus       254 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~  333 (343)
                      ..+|+.|+..++++........                .         .......|+.+||..|++.++|+++.+.++.|
T Consensus       323 ~~L~~~a~~~~~rel~~~~~~~----------------~---------~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~  377 (389)
T 3vfd_A          323 TALAKDAALGPIRELKPEQVKN----------------M---------SASEMRNIRLSDFTESLKKIKRSVSPQTLEAY  377 (389)
T ss_dssp             HHHHHHHTTHHHHTSCCC---C----------------C---------SSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhc----------------c---------chhhcCCcCHHHHHHHHHHcCCCCCHHHHHHH
Confidence            9999999999988753210000                0         00011239999999999999999999999999


Q ss_pred             HHHHHHhCC
Q psy7809         334 KRWNELYGS  342 (343)
Q Consensus       334 ~~~~~~~~~  342 (343)
                      ++|.+.||+
T Consensus       378 ~~~~~~~g~  386 (389)
T 3vfd_A          378 IRWNKDFGD  386 (389)
T ss_dssp             HHHHHHCC-
T ss_pred             HHHHHHhCC
Confidence            999999996

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=296.81  Aligned_cols=288  Identities=39%  Similarity=0.634  Sum_probs=236.9

Q ss_pred             CCCCCChhHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHH
Q psy7809          30 PNRRANPELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV  109 (343)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~i  109 (343)
                      .-...++.+.+.+.+.++.+.++.+|++|+|++.+++.|.+.+..++..+.++.....++.++||+||||||||++|+++
T Consensus        58 ~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai  137 (357)
T 3d8b_A           58 RLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI  137 (357)
T ss_dssp             CSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred             HhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence            34455677888888999999999999999999999999999998887777766655577889999999999999999999


Q ss_pred             HHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC--CchhhhHHHHHHHhhhcccCCCC
Q psy7809         110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS--REHEATRRVRCELLSHMDGVGTG  187 (343)
Q Consensus       110 a~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~  187 (343)
                      |.+++.+++.+++.++...+.+.....+..+|..+....|+||||||+|.+....  .......++++.++..+++....
T Consensus       138 a~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~  217 (357)
T 3d8b_A          138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS  217 (357)
T ss_dssp             HHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred             HHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999998742  22445667888899998876533


Q ss_pred             CCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHHH
Q psy7809         188 SGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLCQ  258 (343)
Q Consensus       188 ~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~  258 (343)
                      . ..+++||++||.++.+++++++||...+.        |.++++.++.... ...+.++..|++.+.||+++||..+|+
T Consensus       218 ~-~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~  296 (357)
T 3d8b_A          218 S-EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR  296 (357)
T ss_dssp             C-CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             C-CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            2 45799999999999999999999986655        8889988887653 235678999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy7809         259 EIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNE  338 (343)
Q Consensus       259 ~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~  338 (343)
                      +|+..++++........                ..         ......|+.+||..|++.++|+++.++++.|++|.+
T Consensus       297 ~a~~~~ir~l~~~~~~~----------------~~---------~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~  351 (357)
T 3d8b_A          297 EASLGPIRSLQTADIAT----------------IT---------PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNK  351 (357)
T ss_dssp             HHHTHHHHHCCC-----------------------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhcc----------------cc---------ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            99999988643100000                00         001123999999999999999999999999999999


Q ss_pred             HhCCC
Q psy7809         339 LYGSR  343 (343)
Q Consensus       339 ~~~~~  343 (343)
                      +||+.
T Consensus       352 ~~g~~  356 (357)
T 3d8b_A          352 TFGCG  356 (357)
T ss_dssp             HHSCC
T ss_pred             HhCCC
Confidence            99974

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=3.6e-38  Score=288.03  Aligned_cols=281  Identities=40%  Similarity=0.637  Sum_probs=226.8

Q ss_pred             hHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .+.+++.+.++.+.++.+|++++|++.+++.|.+.+..+..++.++.+...++.++||+||||||||++|+++|.+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~   81 (297)
T 3b9p_A            2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT   81 (297)
T ss_dssp             CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred             cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence            46678888999999999999999999999999999988887777776665678899999999999999999999999999


Q ss_pred             eEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc--hhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809         117 FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE--HEATRRVRCELLSHMDGVGTGSGDKGVL  194 (343)
Q Consensus       117 ~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~  194 (343)
                      ++.+++.++...+.+.....++.+|..+....|+||||||+|.+......  ......+.+.|+..+++........+++
T Consensus        82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  161 (297)
T 3b9p_A           82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV  161 (297)
T ss_dssp             EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred             eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence            99999999999999988889999999999999999999999999874322  2334567778888888765432234799


Q ss_pred             EEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         195 VLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      ||++||.++.+++++++||...+.        |..|++.++..... ..+.++..++..+.||+++||..+|+.|...++
T Consensus       162 vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~  241 (297)
T 3b9p_A          162 VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI  241 (297)
T ss_dssp             EEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHH
T ss_pred             EEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999987665        88899888876533 356678999999999999999999999999998


Q ss_pred             HHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q psy7809         266 REVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYKRWNELYGS  342 (343)
Q Consensus       266 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~~~~~~~~~  342 (343)
                      ++........                ...  ..       ...|+.+||..|++.++|+++.+.++.|++|.+.||+
T Consensus       242 r~~~~~~~~~----------------~~~--~~-------~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~  293 (297)
T 3b9p_A          242 RELNVEQVKC----------------LDI--SA-------MRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD  293 (297)
T ss_dssp             HTCC------------------------C--CC-------CCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred             HHHhhhhccc----------------ccc--cc-------cCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence            8653210000                000  01       1239999999999999999999999999999999996

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=271.73  Aligned_cols=253  Identities=36%  Similarity=0.549  Sum_probs=197.3

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      ..|.++|+||+|++++++.|.+.+.+++.++..+... +..+.|++|+||||||||+|++++|.+++..++.+++.++..
T Consensus         3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~   82 (274)
T 2x8a_A            3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN   82 (274)
T ss_dssp             ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred             CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence            4578999999999999999999999999998888754 677889999999999999999999999999999999999988


Q ss_pred             ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809         128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL  205 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l  205 (343)
                      .+.+.....+..+|..+....|+++++||+|.++....  ......++.+.++..|++...   ...++++++||+|+.|
T Consensus        83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~---~~~~i~ia~tn~p~~L  159 (274)
T 2x8a_A           83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA---RQQVFIMAATNRPDII  159 (274)
T ss_dssp             STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS---TTCEEEEEEESCGGGS
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc---cCCEEEEeecCChhhC
Confidence            88888888999999999888999999999999875321  112234677888888887644   3478999999999999


Q ss_pred             CHHHhc--cccCcch--------HHHHHhhhhcC---CCCCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         206 DEALKR--RFEKRIS--------PIQIIGLCLGE---IRKDPNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       206 ~~~l~~--rf~~~i~--------r~~il~~~~~~---~~~~~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      |++++|  ||++.++        |.+||+.+++.   .....+++++.+|..+  +||||+||..+|++|.+.|+++...
T Consensus       160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~  239 (274)
T 2x8a_A          160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA  239 (274)
T ss_dssp             CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999  9998887        99999998864   2456789999999975  5999999999999999999987643


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHH
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALI  330 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~  330 (343)
                      ....                          ......+.|+.+||+.|++.++|+++.+++
T Consensus       240 ~~~~--------------------------~~~~~~~~i~~~df~~al~~~~ps~~~~~~  273 (274)
T 2x8a_A          240 RQKS--------------------------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ  273 (274)
T ss_dssp             ------------------------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred             hccc--------------------------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence            1000                          001112359999999999999999987764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=4.7e-34  Score=259.12  Aligned_cols=256  Identities=34%  Similarity=0.568  Sum_probs=204.8

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      +...|...|++++|++++++.|.+.+..+...+..+... ..++.++||+||||||||++|+++|.+++.+++.+++.++
T Consensus         8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~   87 (285)
T 3h4m_A            8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL   87 (285)
T ss_dssp             EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred             ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence            345778899999999999999999999888888877754 5778899999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ...+.+.....+..+|..+....|+||||||+|.+......     .......+..++..++++..   ..+++||+|||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---~~~~~vI~ttn  164 (285)
T 3h4m_A           88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA---RGDVKIIGATN  164 (285)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS---SSSEEEEEECS
T ss_pred             HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC---CCCEEEEEeCC
Confidence            99999999999999999999999999999999999864321     22334556666666665543   33799999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .++.+++++++  ||...+.        |.+|++.++.......+.++..++..+.||+++||..+|+.|...|+.+...
T Consensus       165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~  244 (285)
T 3h4m_A          165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD  244 (285)
T ss_dssp             CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999  9987665        9999999998887778889999999999999999999999999998865321


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhCC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK--SVDGALIRKYKRWNELYGS  342 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p--~~~~~~~~~~~~~~~~~~~  342 (343)
                                                    .       |+.+||.+|++.+.+  +........|..|..+|||
T Consensus       245 ------------------------------~-------I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (285)
T 3h4m_A          245 ------------------------------Y-------VTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH  281 (285)
T ss_dssp             ------------------------------S-------BCHHHHHHHHHHHHHHHCCC----------------
T ss_pred             ------------------------------c-------CCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence                                          2       999999999998853  3455678899999999998

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=100.00  E-value=9.6e-34  Score=274.36  Aligned_cols=251  Identities=37%  Similarity=0.611  Sum_probs=212.8

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH  129 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~  129 (343)
                      +..+|++|+|++.+++.|.+.+..++.++.++... ..++.++||+||||||||++|+++|++++.+|+.++|.++...+
T Consensus       199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~  278 (489)
T 3hu3_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL  278 (489)
T ss_dssp             TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence            45789999999999999999999998899888865 57888999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH
Q psy7809         130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE  207 (343)
Q Consensus       130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~  207 (343)
                      .+.....+..+|..+....|++|||||||.+.+...  ..+...++++.|+..|++....   .+++||++||.++.|++
T Consensus       279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~---~~v~vIaaTn~~~~Ld~  355 (489)
T 3hu3_A          279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---AHVIVMAATNRPNSIDP  355 (489)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT---SCEEEEEEESCGGGBCG
T ss_pred             cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC---CceEEEEecCCccccCH
Confidence            999999999999999999999999999999987432  3456678999999999876543   37999999999999999


Q ss_pred             HHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy7809         208 ALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGV  277 (343)
Q Consensus       208 ~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~  277 (343)
                      ++++  ||...+.        |.+||+.++.......+.++..++..+.||+++||..+|++|...|+++........  
T Consensus       356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~--  433 (489)
T 3hu3_A          356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE--  433 (489)
T ss_dssp             GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT--
T ss_pred             HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc--
Confidence            9999  8887765        999999999988888889999999999999999999999999999998764311000  


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         278 NSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                                      ..  .........+.|+.+||..|++.++|+
T Consensus       434 ----------------~~--~~~~~~~~~~~vt~edf~~Al~~~~ps  462 (489)
T 3hu3_A          434 ----------------DE--TIDAEVMNSLAVTMDDFRWALSQSNPS  462 (489)
T ss_dssp             ----------------CS--SCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred             ----------------cc--ccchhhcccCcCCHHHHHHHHHhCCch
Confidence                            00  000001113359999999999999865

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=100.00  E-value=6.7e-32  Score=259.58  Aligned_cols=233  Identities=36%  Similarity=0.559  Sum_probs=197.7

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      .+..+|+||+|++++++.+.+.+... ..+..+... ...+.++||+||||||||++|+++|.+++.+|+.+++.++...
T Consensus        10 ~~~~~f~di~G~~~~~~~l~e~v~~l-~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~   88 (476)
T 2ce7_A           10 NKRVTFKDVGGAEEAIEELKEVVEFL-KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL   88 (476)
T ss_dssp             SCCCCGGGCCSCHHHHHHHHHHHHHH-HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHHh-hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence            56789999999999999999987653 444444433 5778899999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      +.+.....++.+|..+....|+||||||+|.+.....     ......+.++.|+..++++...   .+++||++||.++
T Consensus        89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~---~~viVIaaTn~~~  165 (476)
T 2ce7_A           89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK---EGIIVMAATNRPD  165 (476)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG---GTEEEEEEESCGG
T ss_pred             HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC---CCEEEEEecCChh
Confidence            9888888899999999999999999999999986432     2233457888999999876543   3799999999999


Q ss_pred             CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7809         204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAG  273 (343)
Q Consensus       204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~  273 (343)
                      .+++++++  ||+..+.        |.+|++.+++...+..++++..+|..+.||+++||.++|++|...|.++...   
T Consensus       166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~---  242 (476)
T 2ce7_A          166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD---  242 (476)
T ss_dssp             GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred             hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCC---
Confidence            99999998  9988775        8899999999887778899999999999999999999999999888754211   


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809         274 FTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK  323 (343)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p  323 (343)
                                                 .       |+.+||..|+..+.+
T Consensus       243 ---------------------------~-------I~~~dl~~al~~v~~  258 (476)
T 2ce7_A          243 ---------------------------K-------ITMKDFEEAIDRVIA  258 (476)
T ss_dssp             ---------------------------S-------BCHHHHHHHHHHHC-
T ss_pred             ---------------------------e-------ecHHHHHHHHHHHhc
Confidence                                       2       999999999998864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=100.00  E-value=1.4e-31  Score=239.40  Aligned_cols=236  Identities=34%  Similarity=0.546  Sum_probs=195.3

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      ..+.+..+|++|+|++.+++.+.+.+.. ...+..+.. +...+.+++|+||||||||++|+++|.+++.+++.+++.++
T Consensus         3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~   81 (257)
T 1lv7_A            3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF   81 (257)
T ss_dssp             EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred             CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence            3467789999999999999999887654 333333332 24567899999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ...+.+.....+..+|..+....|+++||||+|.+......     .....+..+.++..++++..   ..+++||++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~vI~~tn  158 (257)
T 1lv7_A           82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG---NEGIIVIAATN  158 (257)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS---SSCEEEEEEES
T ss_pred             HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc---CCCEEEEEeeC
Confidence            98888888888999999999888999999999999764321     22334677888888887654   33799999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .++.+++++++  ||+..+.        |.+|++.++....+..+.++..++..+.||+++||..+|++|...|..+...
T Consensus       159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~  238 (257)
T 1lv7_A          159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR  238 (257)
T ss_dssp             CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999998  8887665        8899999998887778889999999999999999999999999988754311


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRK  323 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p  323 (343)
                                                    .       |+.+||..|++.+..
T Consensus       239 ------------------------------~-------i~~~~~~~a~~~~~~  254 (257)
T 1lv7_A          239 ------------------------------V-------VSMVEFEKAKDKIMM  254 (257)
T ss_dssp             ------------------------------S-------BCHHHHHHHHHHHTT
T ss_pred             ------------------------------c-------ccHHHHHHHHHHHhc
Confidence                                          2       999999999998753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.97  E-value=3.9e-31  Score=236.69  Aligned_cols=233  Identities=35%  Similarity=0.501  Sum_probs=177.3

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH  129 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~  129 (343)
                      |..+|++++|++++++.+.+.+.. ...+..+.. +...+.++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus         1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~   79 (262)
T 2qz4_A            1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI   79 (262)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence            467899999999999999988765 333333332 346778999999999999999999999999999999999998888


Q ss_pred             ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc------hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE------HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~------~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      .+.....+..+|..+....|+||||||+|.+......      .......+..++..+++...   ..+++||+|||.++
T Consensus        80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---~~~~~vi~~tn~~~  156 (262)
T 2qz4_A           80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT---TDHVIVLASTNRAD  156 (262)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT---TCCEEEEEEESCGG
T ss_pred             cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC---CCCEEEEecCCChh
Confidence            8888888999999999889999999999999764221      22334567778887776543   34899999999999


Q ss_pred             CCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcc--cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809         204 DLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNV--DVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN  271 (343)
Q Consensus       204 ~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~--~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~  271 (343)
                      .+++++++  ||+..+.        |.+|++.++.......+.  .+..++..+.||+++||..+|++|...|.++... 
T Consensus       157 ~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~-  235 (262)
T 2qz4_A          157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT-  235 (262)
T ss_dssp             GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------
T ss_pred             hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence            99999999  9987665        889999988876554433  3578999999999999999999999888765332 


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         272 AGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                                                   .       |+.+||..|++.+.++
T Consensus       236 -----------------------------~-------i~~~d~~~a~~~~~~~  252 (262)
T 2qz4_A          236 -----------------------------S-------VHTLNFEYAVERVLAG  252 (262)
T ss_dssp             -------------------------------------CCBCCHHHHHHHHHHH
T ss_pred             -----------------------------C-------CCHHHHHHHHHHhccC
Confidence                                         2       8889999999987543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.97  E-value=3.1e-30  Score=249.32  Aligned_cols=235  Identities=35%  Similarity=0.516  Sum_probs=195.5

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      ..+..+|+||+|+++++..+.+.+... ..+..+... ...+.+++|+||||||||+||+++|.+++.+++.+++.++..
T Consensus        24 ~~~~~~f~dv~G~~~~k~~l~~lv~~l-~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~  102 (499)
T 2dhr_A           24 EAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE  102 (499)
T ss_dssp             SCCCCCTTSSCSCHHHHHHHHHHHHHH-HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS
T ss_pred             cCCCCCHHHcCCcHHHHHHHHHHHHHh-hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH
Confidence            337889999999999999999887642 334443332 566789999999999999999999999999999999999988


Q ss_pred             ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      .+.+.....+..+|+.+....|+|+||||+|.+.....     ......+.++.++..|++...   ...+++|++||.|
T Consensus       103 ~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~---~~~viviAatn~p  179 (499)
T 2dhr_A          103 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAATNRP  179 (499)
T ss_dssp             SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS---SCCCEEEECCSCG
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc---CccEEEEEecCCh
Confidence            88888888889999988777899999999999976422     123345678888888887644   3378999999999


Q ss_pred             CCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy7809         203 WDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA  272 (343)
Q Consensus       203 ~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~  272 (343)
                      +.||++++|  ||+..+.        |.+||+.+++...+..++++..+|..+.||+++||.++|++|...|.++..   
T Consensus       180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~---  256 (499)
T 2dhr_A          180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR---  256 (499)
T ss_dssp             GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC---
T ss_pred             hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---
Confidence            999999998  8988776        899999998888778889999999999999999999999999887764311   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         273 GFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                                                 ..       |+.+||..|+..+.+.
T Consensus       257 ---------------------------~~-------It~~dl~~al~~v~~~  274 (499)
T 2dhr_A          257 ---------------------------RK-------ITMKDLEEAADRVMML  274 (499)
T ss_dssp             ---------------------------SS-------CCSHHHHHHHHHHTTC
T ss_pred             ---------------------------Cc-------cCHHHHHHHHHHHhcc
Confidence                                       12       8999999999988653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.97  E-value=1.2e-29  Score=226.43  Aligned_cols=219  Identities=37%  Similarity=0.546  Sum_probs=177.4

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      .++...|..+|++++|+++++..+....... ..+..+.. ....+.+++|+||||||||+++++++..++..++.+++.
T Consensus         5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~   83 (254)
T 1ixz_A            5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS   83 (254)
T ss_dssp             ---CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             ccccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence            3456778899999999999999998877643 33444333 356678899999999999999999999999999999988


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ++...+.+.....+..+|+.+....|+++++||+|.+.....     ......+..+.++..+++...   ...++++++
T Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~---~~~~i~~a~  160 (254)
T 1ixz_A           84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAA  160 (254)
T ss_dssp             HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT---TCCEEEEEE
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC---CCCEEEEEc
Confidence            887777777777788999988777899999999999875321     123345667788888876543   336899999


Q ss_pred             cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809         199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r  267 (343)
                      +|.|+.+|++++|  ||+..+.        |.+||+.+.....+..++++..+|..+.||+++||.++|++|...|.++
T Consensus       161 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~  239 (254)
T 1ixz_A          161 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE  239 (254)
T ss_dssp             ESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999998  8887776        8999999888777778899999999999999999999999999888754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.96  E-value=1.8e-31  Score=240.06  Aligned_cols=241  Identities=33%  Similarity=0.542  Sum_probs=192.1

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLT  126 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~  126 (343)
                      .+.+...|++|+|++.+++.+.+.+.. ...+..+... ...+.++||+||||||||++|+++|.+++.+++.+++.++.
T Consensus         3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~   81 (268)
T 2r62_A            3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI   81 (268)
T ss_dssp             CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred             ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence            356778999999999999999987764 4455555433 46678899999999999999999999999999999999988


Q ss_pred             cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCc------hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         127 SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSRE------HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       127 ~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~------~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ..+.+.....+..+|..+....|+||||||+|.+......      .....+.++.|+..+++....  ..+++||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vi~ttn  159 (268)
T 2r62_A           82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE--NAPVIVLAATN  159 (268)
T ss_dssp             TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS--CSCCEEEECBS
T ss_pred             HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC--CCCEEEEEecC
Confidence            8777766666778888888889999999999999763211      111224556777777765432  34689999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .++.+++++++  ||...+.        |.++|+.++.......+.+++.++..+.||+++||.++|++|...|..+.. 
T Consensus       160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~-  238 (268)
T 2r62_A          160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQ-  238 (268)
T ss_dssp             CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCC-
T ss_pred             CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-
Confidence            99999999998  8887776        999999999888777788899999999999999999999998877642210 


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHH
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGA  328 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~  328 (343)
                                                   ..       |+.+||..|++.+.|+...+
T Consensus       239 -----------------------------~~-------i~~~~~~~a~~~~~~~~~~~  260 (268)
T 2r62_A          239 -----------------------------KE-------VRQQHLKEAVERGIAGLEKK  260 (268)
T ss_dssp             -----------------------------CS-------CCHHHHHTSCTTCCCCCC--
T ss_pred             -----------------------------CC-------cCHHHHHHHHHHHhhcchhh
Confidence                                         12       99999999999998885543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.96  E-value=2.8e-28  Score=220.51  Aligned_cols=219  Identities=37%  Similarity=0.545  Sum_probs=177.1

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      .++...+..+|++++|++++++.+....... ..+..+.. ....+.+++|+||||||||+|+++++..++..++.+++.
T Consensus        29 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~  107 (278)
T 1iy2_A           29 RVLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS  107 (278)
T ss_dssp             CCBCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             ccccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence            3455568899999999999999998877643 33333333 356677899999999999999999999999999999988


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ++...+.+.....+..+|+.+....|+++++||+|.+.....     ........+..++..+++...   ...++++++
T Consensus       108 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~---~~~~i~~a~  184 (278)
T 1iy2_A          108 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---DTAIVVMAA  184 (278)
T ss_dssp             HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT---TCCEEEEEE
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC---CCCEEEEEe
Confidence            877777777777788999998878899999999998865321     122334566777777765433   346899999


Q ss_pred             cCCCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809         199 TNHPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       199 tn~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r  267 (343)
                      +|.|+.+|+++++  ||+..+.        |.+||+.++....+..++++..+|..+.||+++||..+|++|...|.++
T Consensus       185 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~  263 (278)
T 1iy2_A          185 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE  263 (278)
T ss_dssp             ESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999998  8888776        8999999888777778889999999999999999999999998887653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.92  E-value=6.3e-26  Score=206.56  Aligned_cols=183  Identities=21%  Similarity=0.228  Sum_probs=135.1

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHH----HHcCCcEEEEccccccc
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETA----RARAPAVIFIDEVDAFC  161 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~~~p~il~iDeid~l~  161 (343)
                      ..+|.++|||||||||||++|+++|++++.+++.++++++...+.|.....+..+|..+    ....|+||||||||.++
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~  112 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA  112 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence            46788999999999999999999999999999999999999999999999999999888    46689999999999998


Q ss_pred             CCCCc----hhhhHHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch------HHH
Q psy7809         162 SGSRE----HEATRRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------PIQ  221 (343)
Q Consensus       162 ~~~~~----~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~------r~~  221 (343)
                      +....    ......+.+.|+..+++..        ......+++||+|||.++.++++++|  ||+..+.      |.+
T Consensus       113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~  192 (293)
T 3t15_A          113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG  192 (293)
T ss_dssp             -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECCCHHHHHH
T ss_pred             CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCcCHHHHHH
Confidence            73221    1134467788888887443        11224579999999999999999997  8887765      888


Q ss_pred             HHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHH---HHHHHHHHHHHHHHHhc
Q psy7809         222 IIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRD---LCQEIILIAAREVIQNA  272 (343)
Q Consensus       222 il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~---l~~~A~~~a~~r~~~~~  272 (343)
                      |++.++..    .+++++.++..++||++++|..   +..+....++++.....
T Consensus       193 Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~  242 (293)
T 3t15_A          193 VCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT  242 (293)
T ss_dssp             HHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98877753    3577999999999999998853   33333444455555433

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.87  E-value=1.6e-23  Score=202.06  Aligned_cols=192  Identities=20%  Similarity=0.248  Sum_probs=130.0

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC--CceEEEcCCcccc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTS  127 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~  127 (343)
                      .|...|++++|++++++.+..++..       ...+..++.++||+||||||||++|+++|++++  .+|+.++++++..
T Consensus        31 ~~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~  103 (456)
T 2c9o_A           31 LAKQAASGLVGQENAREACGVIVEL-------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS  103 (456)
T ss_dssp             CBCSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred             ChhhchhhccCHHHHHHHHHHHHHH-------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence            3456689999999999998877643       222335678999999999999999999999999  8999999999999


Q ss_pred             ccccchHHHHHHHHHHH---HHcCCcEEEEcccccccCCCCchhh---h------------------HHHHHHHhhhccc
Q psy7809         128 KHYGESEKLVRALFETA---RARAPAVIFIDEVDAFCSGSREHEA---T------------------RRVRCELLSHMDG  183 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~---~------------------~~~~~~ll~~l~~  183 (343)
                      .+.+..+. +..+|..+   ....|+||||||+|.+++.......   .                  .++.+.++..++.
T Consensus       104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~  182 (456)
T 2c9o_A          104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK  182 (456)
T ss_dssp             SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred             HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence            99999887 89999998   7788999999999999974332211   0                  1122234444432


Q ss_pred             CCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch------------HHHHHhhhhcCCCCCCcccHHHHHHHccCCC
Q psy7809         184 VGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS------------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       184 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~------------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s  249 (343)
                      ..... ...++|++|||.++.+++++.+  ||+..+.            |.+|++.+..       .+++.++..++|  
T Consensus       183 ~~~~~-~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--  252 (456)
T 2c9o_A          183 ERVEA-GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--  252 (456)
T ss_dssp             TTCCT-TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred             ccCCC-CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence            21111 2356667999999999999876  8887322            5666654442       378999999999  


Q ss_pred             HHHHHHHHHH
Q psy7809         250 GSDIRDLCQE  259 (343)
Q Consensus       250 ~~di~~l~~~  259 (343)
                      |+||..+|..
T Consensus       253 gadl~~l~~~  262 (456)
T 2c9o_A          253 GQDILSMMGQ  262 (456)
T ss_dssp             ----------
T ss_pred             hhHHHHHHhh
Confidence            9999999854

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.85  E-value=9.5e-21  Score=173.23  Aligned_cols=205  Identities=20%  Similarity=0.239  Sum_probs=153.9

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhc----cCCCCceEEEEcCCCchHHHHHHHHHHHhC-------CceEEEcCCcc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKG----ILRPWRGILLFGPPGTGKTLLAKAVASQHG-------STFFNVLPSSL  125 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~----~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-------~~~~~v~~~~l  125 (343)
                      +|+|++.+++.+.+.+..... +.....    ...++.++||+||||||||++|+++|+.++       .+++.+++.++
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l  110 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL  110 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred             HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence            799999999999998876432 222211    124556899999999999999999999883       38999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC--
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW--  203 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~--  203 (343)
                      ...+.+.....+..+|..+   .++||||||+|.++............++.|+..++..     ..++++|+++|.+.  
T Consensus       111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~~~~  182 (309)
T 3syl_A          111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-----RDDLVVILAGYADRME  182 (309)
T ss_dssp             CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHHHHH
T ss_pred             hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-----CCCEEEEEeCChHHHH
Confidence            9999988888888888776   4589999999999865444445667888888888754     23678888888653  


Q ss_pred             ---CCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHcc-------CCCHHHHHHHHHHHHHHH
Q psy7809         204 ---DLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLI-------GYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       204 ---~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~-------g~s~~di~~l~~~A~~~a  264 (343)
                         .+++++++||...+.        +..|++.++...... ++..+..++..+.       .-+++++.+++++|+..+
T Consensus       183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~  262 (309)
T 3syl_A          183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ  262 (309)
T ss_dssp             HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence               256899999976665        778888877765322 3334556666532       225899999999999988


Q ss_pred             HHHHHH
Q psy7809         265 AREVIQ  270 (343)
Q Consensus       265 ~~r~~~  270 (343)
                      ..+...
T Consensus       263 ~~r~~~  268 (309)
T 3syl_A          263 ANRLFT  268 (309)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888775

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.84  E-value=3.2e-20  Score=173.83  Aligned_cols=214  Identities=20%  Similarity=0.173  Sum_probs=146.3

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCCccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSK  128 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~~l~~~  128 (343)
                      |...|++++|++.+++.+..+....       .....++.++||+||||||||++|+++|+.++.  +++.+++..+...
T Consensus        39 p~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  111 (368)
T 3uk6_A           39 PRQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL  111 (368)
T ss_dssp             BCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred             cCcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence            3445999999999998876554321       122245679999999999999999999999975  7778877664433


Q ss_pred             cccc-------------------------------------------------hHHHHHHHHHHHHH----c-----CCc
Q psy7809         129 HYGE-------------------------------------------------SEKLVRALFETARA----R-----APA  150 (343)
Q Consensus       129 ~~~~-------------------------------------------------~~~~i~~~~~~a~~----~-----~p~  150 (343)
                      +.+.                                                 ....+...+..+..    .     .|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  191 (368)
T 3uk6_A          112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG  191 (368)
T ss_dssp             SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred             ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence            2221                                                 12223334433322    1     167


Q ss_pred             EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec-----------CCCCCCCHHHhccccCcch-
Q psy7809         151 VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT-----------NHPWDLDEALKRRFEKRIS-  218 (343)
Q Consensus       151 il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt-----------n~~~~l~~~l~~rf~~~i~-  218 (343)
                      ||||||+|.+.         ....+.|+..++..     ...++++++.           |.+..+++++++||..... 
T Consensus       192 vl~IDEi~~l~---------~~~~~~L~~~le~~-----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~  257 (368)
T 3uk6_A          192 VLFIDEVHMLD---------IESFSFLNRALESD-----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT  257 (368)
T ss_dssp             EEEEESGGGSB---------HHHHHHHHHHTTCT-----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEEC
T ss_pred             eEEEhhccccC---------hHHHHHHHHHhhCc-----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEec
Confidence            99999999883         34566777776543     2245555554           3477899999999866221 


Q ss_pred             ------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCC
Q psy7809         219 ------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAK  291 (343)
Q Consensus       219 ------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~  291 (343)
                            +..+++..+..... .++..+..++..+.+.+++++.++++.|...|..+..                      
T Consensus       258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~----------------------  315 (368)
T 3uk6_A          258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG----------------------  315 (368)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC----------------------
Confidence                  66777766654322 3455678899999845899999999999988865421                      


Q ss_pred             CCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         292 GDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       292 ~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                              ..       |+.+|+.+|+..+.
T Consensus       316 --------~~-------It~~~v~~a~~~~~  331 (368)
T 3uk6_A          316 --------TE-------VQVDDIKRVYSLFL  331 (368)
T ss_dssp             --------SS-------BCHHHHHHHHHHSB
T ss_pred             --------CC-------CCHHHHHHHHHHhc
Confidence                    12       99999999999853

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.80  E-value=6.1e-19  Score=163.34  Aligned_cols=196  Identities=16%  Similarity=0.182  Sum_probs=137.6

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+..++.+.+|++++|++.+++.+...+.....       ...++.++||+||||||||++|+++|++++.+++.+++..
T Consensus        18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~   90 (338)
T 3pfi_A           18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM   90 (338)
T ss_dssp             -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence            345667778999999999999999988764311       1145578999999999999999999999999999999876


Q ss_pred             cccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC-------------CCCC
Q psy7809         125 LTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG-------------SGDK  191 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-------------~~~~  191 (343)
                      +..      ...+...+..  ...+++|||||+|.+.         ......|+..++.....             ....
T Consensus        91 ~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~---------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T 3pfi_A           91 IEK------SGDLAAILTN--LSEGDILFIDEIHRLS---------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP  153 (338)
T ss_dssp             CCS------HHHHHHHHHT--CCTTCEEEEETGGGCC---------HHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred             ccc------hhHHHHHHHh--ccCCCEEEEechhhcC---------HHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence            531      1223333332  2356899999999883         24555666666543210             0011


Q ss_pred             CEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809         192 GVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIIL  262 (343)
Q Consensus       192 ~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~  262 (343)
                      ++++|++||....+++++++||+..+.        +..+++..+...... ++..+..++..+.| +++++.++++.|..
T Consensus       154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~  232 (338)
T 3pfi_A          154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD  232 (338)
T ss_dssp             CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence            489999999999999999999866554        667777766654322 34456778887766 67888888888776


Q ss_pred             HHH
Q psy7809         263 IAA  265 (343)
Q Consensus       263 ~a~  265 (343)
                      .+.
T Consensus       233 ~a~  235 (338)
T 3pfi_A          233 FAD  235 (338)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.80  E-value=3.6e-19  Score=162.49  Aligned_cols=236  Identities=19%  Similarity=0.264  Sum_probs=152.4

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGE  132 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~  132 (343)
                      ++++|++++++.+...+..+.....+...  ....+.++||+||||||||++|+++++.++.+++.+++.++.. .+.+.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~   94 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   94 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence            35899999999998877542111111000  0135679999999999999999999999999999999988765 44443


Q ss_pred             h-HHHHHHHHHHH-----HHcCCcEEEEcccccccCCCC---chhhhHHHHHHHhhhcccCCC-----CCCCCCEEEEEe
Q psy7809         133 S-EKLVRALFETA-----RARAPAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDGVGT-----GSGDKGVLVLAA  198 (343)
Q Consensus       133 ~-~~~i~~~~~~a-----~~~~p~il~iDeid~l~~~~~---~~~~~~~~~~~ll~~l~~~~~-----~~~~~~v~vI~t  198 (343)
                      . ...+..++..+     ....++||||||+|.+.....   .......+.+.|+..+++...     .....++++|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~  174 (310)
T 1ofh_A           95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS  174 (310)
T ss_dssp             STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred             cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence            2 33455555422     112357999999999976431   122223346777777764310     001236788888


Q ss_pred             ----cCCCCCCCHHHhccccCcch--------HHHHHhhhh-----------cCCC---CCCcccHHHHHHHcc------
Q psy7809         199 ----TNHPWDLDEALKRRFEKRIS--------PIQIIGLCL-----------GEIR---KDPNVDVATLSKQLI------  246 (343)
Q Consensus       199 ----tn~~~~l~~~l~~rf~~~i~--------r~~il~~~~-----------~~~~---~~~~~~~~~la~~t~------  246 (343)
                          ++.+..+++++++||+..+.        +..|++...           ....   ..++..++.|+..+.      
T Consensus       175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~  254 (310)
T 1ofh_A          175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT  254 (310)
T ss_dssp             ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred             CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccc
Confidence                45778899999999985554        555555211           0111   123445677777762      


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         247 -GYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       247 -g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                       +.+.+.+.+++++++..+..+...                               .....+.|+.+|+.+|++...
T Consensus       255 ~~g~~R~l~~~l~~~~~~~~~~~~~-------------------------------~~~~~~~i~~~~v~~~l~~~~  300 (310)
T 1ofh_A          255 ENIGARRLHTVMERLMDKISFSASD-------------------------------MNGQTVNIDAAYVADALGEVV  300 (310)
T ss_dssp             CCCTTHHHHHHHHHHSHHHHHHGGG-------------------------------CTTCEEEECHHHHHHHTCSSS
T ss_pred             cccCcHHHHHHHHHHHHhhhcCCcc-------------------------------ccCCEEEEeeHHHHHHHHhhh
Confidence             457899999999887765543321                               111234599999999998764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.80  E-value=5.7e-19  Score=158.73  Aligned_cols=172  Identities=17%  Similarity=0.209  Sum_probs=124.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR  165 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~  165 (343)
                      .++.++||+||||||||++|+++|+.++.+++.+++.+... .........+..+|..+....+++|||||+|.+++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~  141 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP  141 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence            56679999999999999999999999999999998765332 22222335677888888777789999999999976322


Q ss_pred             -chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCH-HHhccccCcch------HHHHHhhhhcCCCCCCccc
Q psy7809         166 -EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDE-ALKRRFEKRIS------PIQIIGLCLGEIRKDPNVD  237 (343)
Q Consensus       166 -~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~-~l~~rf~~~i~------r~~il~~~~~~~~~~~~~~  237 (343)
                       .......++..|...++.....  ..+++||+|||.++.+++ .+.+||...+.      |.+|...+..... ..+.+
T Consensus       142 ~~~~~~~~~l~~L~~~~~~~~~~--~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-~~~~~  218 (272)
T 1d2n_A          142 IGPRFSNLVLQALLVLLKKAPPQ--GRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-FKDKE  218 (272)
T ss_dssp             TTTBCCHHHHHHHHHHTTCCCST--TCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-SCHHH
T ss_pred             CChhHHHHHHHHHHHHhcCccCC--CCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-CCHHH
Confidence             2223445666666666554321  347889999999988887 67778877665      6777766654433 35667


Q ss_pred             HHHHHHHccCC----CHHHHHHHHHHHH
Q psy7809         238 VATLSKQLIGY----SGSDIRDLCQEII  261 (343)
Q Consensus       238 ~~~la~~t~g~----s~~di~~l~~~A~  261 (343)
                      +..++..+.||    +.+++.++++.|.
T Consensus       219 ~~~l~~~~~g~~~~g~ir~l~~~l~~a~  246 (272)
T 1d2n_A          219 RTTIAQQVKGKKVWIGIKKLLMLIEMSL  246 (272)
T ss_dssp             HHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence            88999999997    5666666665543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.79  E-value=5.7e-19  Score=173.47  Aligned_cols=202  Identities=23%  Similarity=0.284  Sum_probs=129.7

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc--------
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS--------  127 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~--------  127 (343)
                      ++++|++++++.+.+.+........      .++.+++|+||||||||++|+++|..++.++..+++..+..        
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~  154 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR  154 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred             HHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence            4689999999999877654321111      25668999999999999999999999999999999876543        


Q ss_pred             -ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC----------CCCCEEEE
Q psy7809         128 -KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS----------GDKGVLVL  196 (343)
Q Consensus       128 -~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~----------~~~~v~vI  196 (343)
                       .+.+.....+...|..+....| ||||||+|.+.....     ....+.|+..++......          ...+++||
T Consensus       155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI  228 (543)
T 3m6a_A          155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI  228 (543)
T ss_dssp             ---------CHHHHHHTTCSSSE-EEEEEESSSCC--------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred             HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-----cCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence             3444444555666666655554 999999999965321     124567777776422110          01478999


Q ss_pred             EecCCCCCCCHHHhccccCcch--------HHHHHhhhhcC-----CCCC------CcccHHHHHHHcc-CCCHHHHHHH
Q psy7809         197 AATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGE-----IRKD------PNVDVATLSKQLI-GYSGSDIRDL  256 (343)
Q Consensus       197 ~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~-----~~~~------~~~~~~~la~~t~-g~s~~di~~l  256 (343)
                      +|||.++.+++++++||. .+.        +..|++.++..     ....      ++..+..++.... ....++|++.
T Consensus       229 ~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~  307 (543)
T 3m6a_A          229 ATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQ  307 (543)
T ss_dssp             EECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHH
T ss_pred             eccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHH
Confidence            999999999999999995 343        66777766522     1111      2333455555333 2456888888


Q ss_pred             HHHHHHHHHHHHHH
Q psy7809         257 CQEIILIAAREVIQ  270 (343)
Q Consensus       257 ~~~A~~~a~~r~~~  270 (343)
                      +++++..+..+...
T Consensus       308 i~~~~~~aa~~~~~  321 (543)
T 3m6a_A          308 LAAICRKAAKAIVA  321 (543)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            88887777766654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.77  E-value=5e-18  Score=156.09  Aligned_cols=192  Identities=20%  Similarity=0.222  Sum_probs=131.9

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      +..+.+|++++|.+..++.+...+....       .....+.+++|+||||||||++|+++++.++.+++.+++..+.. 
T Consensus         5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-   76 (324)
T 1hqc_A            5 ALRPKTLDEYIGQERLKQKLRVYLEAAK-------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-   76 (324)
T ss_dssp             CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------HHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred             ccCcccHHHhhCHHHHHHHHHHHHHHHH-------ccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence            4566789999999999999988775321       01134578999999999999999999999999999999876532 


Q ss_pred             cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CCC--------CCCCEEE
Q psy7809         129 HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TGS--------GDKGVLV  195 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~--------~~~~v~v  195 (343)
                           ...+...+..+ ...+++|||||+|.+..         .....|+..++...     ...        ...++.+
T Consensus        77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~---------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~  141 (324)
T 1hqc_A           77 -----PGDLAAILANS-LEEGDILFIDEIHRLSR---------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL  141 (324)
T ss_dssp             -----HHHHHHHHTTT-CCTTCEEEETTTTSCCH---------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred             -----hHHHHHHHHHh-ccCCCEEEEECCccccc---------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence                 11222222210 13568999999998832         23344444444321     000        0125789


Q ss_pred             EEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy7809         196 LAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIA  264 (343)
Q Consensus       196 I~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a  264 (343)
                      |++||.+..+++.+.+||...+.        +..+++.++..... .++..+..++..+.| +++++.++++.+...+
T Consensus       142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a  218 (324)
T 1hqc_A          142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFA  218 (324)
T ss_dssp             EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTS
T ss_pred             EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999965544        56677666654422 244557889999877 5788888887665443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.75  E-value=4.8e-18  Score=162.80  Aligned_cols=184  Identities=20%  Similarity=0.294  Sum_probs=126.9

Q ss_pred             ccccccCCCCCCCcccccHHHH---HHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVK---QIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++..+..+.+|++++|++.++   +.|...+...            ...++||+||||||||++|+++++.++.+++.+
T Consensus        14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            4555667788999999999999   6777666532            236899999999999999999999999999999


Q ss_pred             cCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809         121 LPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVL  196 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI  196 (343)
                      ++....       ...++.++..+.    ...++||||||+|.+..         .....|+..++.       ..+++|
T Consensus        82 ~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------~~q~~LL~~le~-------~~v~lI  138 (447)
T 3pvs_A           82 SAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------SQQDAFLPHIED-------GTITFI  138 (447)
T ss_dssp             ETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------CCHHHHHT-------TSCEEE
T ss_pred             EeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------HHHHHHHHHHhc-------CceEEE
Confidence            864422       223444554443    34578999999999843         234466777763       245666


Q ss_pred             Eec--CCCCCCCHHHhccccCcch-------HHHHHhhhhcCC--------CCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809         197 AAT--NHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEI--------RKDPNVDVATLSKQLIGYSGSDIRDLCQE  259 (343)
Q Consensus       197 ~tt--n~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~--------~~~~~~~~~~la~~t~g~s~~di~~l~~~  259 (343)
                      ++|  |....+++++++|+.....       ...+++..+...        ...++..++.|+..+.| +.+.+.++++.
T Consensus       139 ~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~  217 (447)
T 3pvs_A          139 GATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM  217 (447)
T ss_dssp             EEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred             ecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            655  3445789999998764332       666676666542        11234457788888776 67888888777


Q ss_pred             HHHH
Q psy7809         260 IILI  263 (343)
Q Consensus       260 A~~~  263 (343)
                      |...
T Consensus       218 a~~~  221 (447)
T 3pvs_A          218 MADM  221 (447)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.75  E-value=2e-17  Score=157.02  Aligned_cols=245  Identities=18%  Similarity=0.284  Sum_probs=159.3

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhcc--CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc-ccccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS-KHYGE  132 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~-~~~~~  132 (343)
                      ++|+|++++|+.|...+..+..+..++...  ..++.++||+||||||||++|+++|..++.+|+.+++..+.. .|+|.
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~   94 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   94 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence            368999999999998887665444433322  135689999999999999999999999999999999988877 46764


Q ss_pred             -hHHHHHHHHHHHH------------------------------------------------------------------
Q psy7809         133 -SEKLVRALFETAR------------------------------------------------------------------  145 (343)
Q Consensus       133 -~~~~i~~~~~~a~------------------------------------------------------------------  145 (343)
                       ....++.+|..+.                                                                  
T Consensus        95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~  174 (444)
T 1g41_A           95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE  174 (444)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence             4555555544330                                                                  


Q ss_pred             -----------------------------------------------------------------------Hc--CCcEE
Q psy7809         146 -----------------------------------------------------------------------AR--APAVI  152 (343)
Q Consensus       146 -----------------------------------------------------------------------~~--~p~il  152 (343)
                                                                                             ..  ..++|
T Consensus       175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il  254 (444)
T 1g41_A          175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV  254 (444)
T ss_dssp             ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred             EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence                                                                                   00  12489


Q ss_pred             EEcccccccCCCC--chh-hhHHHHHHHhhhcccCCCC-----CCCCCEEEEEec----CCCCCCCHHHhccccCcch--
Q psy7809         153 FIDEVDAFCSGSR--EHE-ATRRVRCELLSHMDGVGTG-----SGDKGVLVLAAT----NHPWDLDEALKRRFEKRIS--  218 (343)
Q Consensus       153 ~iDeid~l~~~~~--~~~-~~~~~~~~ll~~l~~~~~~-----~~~~~v~vI~tt----n~~~~l~~~l~~rf~~~i~--  218 (343)
                      ++||+|+++....  ..+ ....++..|+..+++....     -..+++++|+|.    +.+.++-|.+++||+.++.  
T Consensus       255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~  334 (444)
T 1g41_A          255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT  334 (444)
T ss_dssp             EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred             eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence            9999999986422  222 2234778899999863211     013478999987    3455566899999998765  


Q ss_pred             ---HHHHHhhhh-----------cCC---C---CCCcccHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy7809         219 ---PIQIIGLCL-----------GEI---R---KDPNVDVATLSKQ-------LIGYSGSDIRDLCQEIILIAAREVIQN  271 (343)
Q Consensus       219 ---r~~il~~~~-----------~~~---~---~~~~~~~~~la~~-------t~g~s~~di~~l~~~A~~~a~~r~~~~  271 (343)
                         ..+++++..           ..+   .   ..++..+..|++.       |...-.+.|+.++.+++..+..+... 
T Consensus       335 ~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~-  413 (444)
T 1g41_A          335 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD-  413 (444)
T ss_dssp             CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG-
T ss_pred             CCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccc-
Confidence               333333321           111   0   0133345566653       34555788888887777666655432 


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809         272 AGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK  334 (343)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~  334 (343)
                                                    .....+.|+.+++.+.+.   |.+..+++.+|.
T Consensus       414 ------------------------------~~~~~~~i~~~~v~~~l~---~~~~~~dl~~~~  443 (444)
T 1g41_A          414 ------------------------------MNGQTVNIDAAYVADALG---EVVENEDLSRFI  443 (444)
T ss_dssp             ------------------------------CTTCEEEECHHHHHHHHT---TTTTCHHHHHHH
T ss_pred             ------------------------------cCCCeEEEeHHHHHHhcC---ccccCCChhccc
Confidence                                          112345699999987765   446677887774

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.74  E-value=1.6e-17  Score=143.37  Aligned_cols=183  Identities=21%  Similarity=0.169  Sum_probs=123.8

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEE
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNV  120 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v  120 (343)
                      +..+.++..|++++|.+..++.+...+...            ...+++|+||+|+|||++++++++++     ...++.+
T Consensus         7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~   74 (226)
T 2chg_A            7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM   74 (226)
T ss_dssp             HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred             HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence            445677889999999999999999888642            23359999999999999999999886     3457777


Q ss_pred             cCCccccccccchHHHHHHHHHHHH------HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEE
Q psy7809         121 LPSSLTSKHYGESEKLVRALFETAR------ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVL  194 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~~i~~~~~~a~------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  194 (343)
                      ++......      ..+...+....      ...+.+|+|||+|.+..         .....|+..++..     ..++.
T Consensus        75 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~~~~~l~~~l~~~-----~~~~~  134 (226)
T 2chg_A           75 NASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------DAQAALRRTMEMY-----SKSCR  134 (226)
T ss_dssp             ETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------HHHHHHHHHHHHT-----TTTEE
T ss_pred             ccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------HHHHHHHHHHHhc-----CCCCe
Confidence            76543321      12222222222      14578999999998832         2344555555543     23678


Q ss_pred             EEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809         195 VLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIIL  262 (343)
Q Consensus       195 vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~  262 (343)
                      +|+++|.+..+++.+.+||. .+.        ...++...+..... .++..+..++..+.| +++.+.++++.+..
T Consensus       135 ~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~  209 (226)
T 2chg_A          135 FILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA  209 (226)
T ss_dssp             EEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             EEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence            89999999999999999876 333        44555555543222 234456788888866 57776666665543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.74  E-value=1.7e-17  Score=159.06  Aligned_cols=194  Identities=13%  Similarity=0.209  Sum_probs=122.9

Q ss_pred             CCCCCCCccc-cc--HHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEc
Q psy7809          50 DTGVGWDDIA-GL--DNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVL  121 (343)
Q Consensus        50 ~~~~~~~~l~-G~--~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~  121 (343)
                      .+..+|++++ |.  ......+..+...+.          . +.+++|+||||+|||+|++++++++     +.++++++
T Consensus        99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A           99 NPDYTFENFVVGPGNSFAYHAALEVAKHPG----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             CTTCSGGGCCCCTTTHHHHHHHHHHHHSTT----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCCCChhhcCCCCchHHHHHHHHHHHhCCC----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            3456899987 53  344445554444321          2 5789999999999999999999988     78899998


Q ss_pred             CCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         122 PSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       122 ~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      +.++...............|.......++||||||+|.+....       .....|+..++....   ....+||++.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------~~q~~l~~~l~~l~~---~~~~iIitt~~~  237 (440)
T 2z4s_A          168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------GVQTELFHTFNELHD---SGKQIVICSDRE  237 (440)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------HHHHHHHHHHHHHHT---TTCEEEEEESSC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHH---CCCeEEEEECCC
Confidence            8776443222211111112332222267899999999985421       122233333332221   124555655555


Q ss_pred             CCC---CCHHHhcccc--Ccch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         202 PWD---LDEALKRRFE--KRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       202 ~~~---l~~~l~~rf~--~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                      +..   +++.+++||.  ..+.        |..|++..+..... .++..+..||..+.| +.+++..+++.+...|.
T Consensus       238 ~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~  314 (440)
T 2z4s_A          238 PQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE  314 (440)
T ss_dssp             GGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            554   7899999985  2232        77888877754322 233447899999977 79999999998877764

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.73  E-value=7.4e-18  Score=157.76  Aligned_cols=212  Identities=19%  Similarity=0.255  Sum_probs=137.4

Q ss_pred             cccccHHHHHHHHHHHhccccChHHH---hccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc-cccc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLF---KGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK-HYGE  132 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~---~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~-~~~~  132 (343)
                      .|+|++.+++.+...+..........   .....++.++||+||||||||++|+++|..++.+|+.++|.++... ++|.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~   95 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE   95 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence            37999999999998875322111110   0111356789999999999999999999999999999999887754 5555


Q ss_pred             h-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhcccCCCC---------------
Q psy7809         133 S-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDGVGTG---------------  187 (343)
Q Consensus       133 ~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~~~~~---------------  187 (343)
                      . ...+..+|..+    ....++||||||+|.+......     ......+++.|+..|++....               
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~  175 (363)
T 3hws_A           96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL  175 (363)
T ss_dssp             HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred             cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence            4 44566666654    3345689999999999864222     122234888999988843100               


Q ss_pred             -CCCCCEEEEEecCCC----------CC-----------------------------------CCHHHhccccCcch---
Q psy7809         188 -SGDKGVLVLAATNHP----------WD-----------------------------------LDEALKRRFEKRIS---  218 (343)
Q Consensus       188 -~~~~~v~vI~ttn~~----------~~-----------------------------------l~~~l~~rf~~~i~---  218 (343)
                       -...++++|++++..          ..                                   +.+.+++||+..+.   
T Consensus       176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p  255 (363)
T 3hws_A          176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE  255 (363)
T ss_dssp             CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred             EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence             012345566666532          11                                   67888899887774   


Q ss_pred             -----HHHHHhh----hh-------cCCCC---CCcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH
Q psy7809         219 -----PIQIIGL----CL-------GEIRK---DPNVDVATLSKQ--LIGYSGSDIRDLCQEIILIAAREV  268 (343)
Q Consensus       219 -----r~~il~~----~~-------~~~~~---~~~~~~~~la~~--t~g~s~~di~~l~~~A~~~a~~r~  268 (343)
                           +.+|+..    ++       .....   .++..++.|+..  ...+..++|++++++++..++.+.
T Consensus       256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~  326 (363)
T 3hws_A          256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL  326 (363)
T ss_dssp             CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence                 4445543    11       11111   133345667653  345567999999999888877654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.73  E-value=6.1e-17  Score=165.52  Aligned_cols=243  Identities=21%  Similarity=0.243  Sum_probs=165.4

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------  113 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------  113 (343)
                      ..+.....+..|++++|.++.++.+.+.+..            ....++||+||||||||++|++++..+          
T Consensus       174 ~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~  241 (758)
T 1r6b_X          174 TNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA  241 (758)
T ss_dssp             CBHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGT
T ss_pred             HhHHHHHhcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence            3344445566899999999999998887753            345789999999999999999999887          


Q ss_pred             CCceEEEcCCccc--cccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCC
Q psy7809         114 GSTFFNVLPSSLT--SKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDK  191 (343)
Q Consensus       114 ~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~  191 (343)
                      +..++.+++..+.  ..+.+..+..+..+|..+....++||||||+|.+++............+.|...++       ..
T Consensus       242 ~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-------~~  314 (758)
T 1r6b_X          242 DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-------SG  314 (758)
T ss_dssp             TCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-------SC
T ss_pred             CCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-------CC
Confidence            5678888877776  35677888889999998887778999999999998754332223334444444443       23


Q ss_pred             CEEEEEecCCC-----CCCCHHHhccccCcch--------HHHHHhhhhcCC----C-CCCcccHHHHHHHccCC-----
Q psy7809         192 GVLVLAATNHP-----WDLDEALKRRFEKRIS--------PIQIIGLCLGEI----R-KDPNVDVATLSKQLIGY-----  248 (343)
Q Consensus       192 ~v~vI~ttn~~-----~~l~~~l~~rf~~~i~--------r~~il~~~~~~~----~-~~~~~~~~~la~~t~g~-----  248 (343)
                      .+.+|++|+.+     ..+++++.+||.. +.        +.+|++.+....    . ...+..+..++..+.||     
T Consensus       315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~~-i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~  393 (758)
T 1r6b_X          315 KIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH  393 (758)
T ss_dssp             CCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred             CeEEEEEeCchHHhhhhhcCHHHHhCceE-EEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence            67888888864     3577899999983 33        777787766441    1 12344566777776654     


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC----CC
Q psy7809         249 SGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR----KS  324 (343)
Q Consensus       249 s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~----p~  324 (343)
                      .+..+.+++++|...+..+  .                               .......|+.+|+..++....    +.
T Consensus       394 lp~~~i~lld~a~~~~~~~--~-------------------------------~~~~~~~v~~~di~~~~~~~~~ip~~~  440 (758)
T 1r6b_X          394 LPDKAIDVIDEAGARARLM--P-------------------------------VSKRKKTVNVADIESVVARIARIPEKS  440 (758)
T ss_dssp             TTHHHHHHHHHHHHHHHHS--S-------------------------------SCCCCCSCCHHHHHHHHHHHSCCCCCC
T ss_pred             CchHHHHHHHHHHHHHhcc--c-------------------------------ccccCCccCHHHHHHHHHHhcCCCccc
Confidence            5667788888776443211  0                               000112389999999998864    24


Q ss_pred             CCHHHHHHHHHHHHH
Q psy7809         325 VDGALIRKYKRWNEL  339 (343)
Q Consensus       325 ~~~~~~~~~~~~~~~  339 (343)
                      +.+++...+....+.
T Consensus       441 ~~~~~~~~l~~l~~~  455 (758)
T 1r6b_X          441 VSQSDRDTLKNLGDR  455 (758)
T ss_dssp             SSSSHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHH
Confidence            556666666655543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.73  E-value=1.5e-16  Score=149.29  Aligned_cols=196  Identities=17%  Similarity=0.081  Sum_probs=130.6

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCc
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSS  124 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~  124 (343)
                      ..++++|.+..++.+...+.....        ...+.+++|+||||||||++++++++.+         +..+++++|..
T Consensus        17 ~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           17 VPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             CCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            347899999999999987743211        1456789999999999999999999988         78899999876


Q ss_pred             ccccc----------------ccc-hHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         125 LTSKH----------------YGE-SEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       125 l~~~~----------------~~~-~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                      .....                .+. ....+..++...... .|.||+|||+|.+....    .....+..++..++....
T Consensus        89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----~~~~~l~~l~~~~~~~~~  164 (387)
T 2v1u_A           89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----GGQDLLYRITRINQELGD  164 (387)
T ss_dssp             SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----THHHHHHHHHHGGGCC--
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----CCChHHHhHhhchhhcCC
Confidence            43211                111 223344444444333 37799999999985321    133455566665543321


Q ss_pred             CCCCCCEEEEEecCCC---CCCCHHHhccccC-cch--------HHHHHhhhhcC---CCCCCcccHHHHHHHcc---CC
Q psy7809         187 GSGDKGVLVLAATNHP---WDLDEALKRRFEK-RIS--------PIQIIGLCLGE---IRKDPNVDVATLSKQLI---GY  248 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~--------r~~il~~~~~~---~~~~~~~~~~~la~~t~---g~  248 (343)
                         ..++.+|++||.+   +.+++.+.+||.. .+.        ...+++..+..   ....++..+..++..+.   | 
T Consensus       165 ---~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-  240 (387)
T 2v1u_A          165 ---RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-  240 (387)
T ss_dssp             ------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-
T ss_pred             ---CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-
Confidence               2267899999887   6789999999865 333        55666665543   11223445778888887   6 


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy7809         249 SGSDIRDLCQEIILIAA  265 (343)
Q Consensus       249 s~~di~~l~~~A~~~a~  265 (343)
                      .++.+.++++.|...|.
T Consensus       241 ~~r~~~~~l~~a~~~a~  257 (387)
T 2v1u_A          241 DARRALDLLRVAGEIAE  257 (387)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            57888888988876665

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.71  E-value=2.2e-17  Score=144.36  Aligned_cols=191  Identities=21%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE--cC
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV--LP  122 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v--~~  122 (343)
                      .+..++.+..|++++|.+..++.+...+...           ..+..++|+||+|+|||++++++++.+.......  .+
T Consensus        12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~   80 (250)
T 1njg_A           12 VLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC   80 (250)
T ss_dssp             CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred             HHhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence            3456677888999999999999999887532           3345799999999999999999998875422110  00


Q ss_pred             --------------Ccccccc--ccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         123 --------------SSLTSKH--YGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       123 --------------~~l~~~~--~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                                    .++....  .......+..++..+.    ...+.+|+|||+|.+.         ......|+..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~---------~~~~~~l~~~l~  151 (250)
T 1njg_A           81 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------RHSFNALLKTLE  151 (250)
T ss_dssp             SCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC---------HHHHHHHHHHHH
T ss_pred             cccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc---------HHHHHHHHHHHh
Confidence                          0000000  0112233444444332    2246899999999872         234556666665


Q ss_pred             cCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHH
Q psy7809         183 GVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIR  254 (343)
Q Consensus       183 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~  254 (343)
                      ..     ..++.+|++|+.+..+++.+.+|+...-.       ..++++..+..... .++..+..+++.+.| +++.+.
T Consensus       152 ~~-----~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~  225 (250)
T 1njg_A          152 EP-----PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDAL  225 (250)
T ss_dssp             SC-----CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHH
T ss_pred             cC-----CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence            43     33688999999988899999887522111       55666665544322 234557889999988 799999


Q ss_pred             HHHHHHH
Q psy7809         255 DLCQEII  261 (343)
Q Consensus       255 ~l~~~A~  261 (343)
                      ++++.|+
T Consensus       226 ~~~~~~~  232 (250)
T 1njg_A          226 SLTDQAI  232 (250)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.71  E-value=6.3e-17  Score=148.93  Aligned_cols=183  Identities=21%  Similarity=0.120  Sum_probs=126.3

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+.+++.+.+|++++|++++++.+...+...           ..+..+|++||||||||++|+++|++++.+++++++++
T Consensus        15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~   83 (324)
T 3u61_B           15 ILEQKYRPSTIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD   83 (324)
T ss_dssp             SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred             hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence            5667788899999999999999999888632           34567788899999999999999999999999999866


Q ss_pred             cccccccchHHHHHHHHHHHHHc-----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         125 LTSKHYGESEKLVRALFETARAR-----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       125 l~~~~~~~~~~~i~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ..       ...+...+......     .+.||||||+|.+.+        ....+.|+..++...     .++.+|++|
T Consensus        84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------~~~~~~L~~~le~~~-----~~~~iI~~~  143 (324)
T 3u61_B           84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------AESQRHLRSFMEAYS-----SNCSIIITA  143 (324)
T ss_dssp             CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------HHHHHHHHHHHHHHG-----GGCEEEEEE
T ss_pred             cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------HHHHHHHHHHHHhCC-----CCcEEEEEe
Confidence            32       23344444433332     467999999998831        234556666666442     357899999


Q ss_pred             CCCCCCCHHHhccccCcch--------HHHHHhhhhc-------CCCC-CCc-ccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         200 NHPWDLDEALKRRFEKRIS--------PIQIIGLCLG-------EIRK-DPN-VDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       200 n~~~~l~~~l~~rf~~~i~--------r~~il~~~~~-------~~~~-~~~-~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      |.+..+++++++||.. +.        |..|++.++.       .... .++ ..++.++..+.|. .+++.+.++.+
T Consensus       144 n~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd-~R~a~~~L~~~  219 (324)
T 3u61_B          144 NNIDGIIKPLQSRCRV-ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD-FRKTIGELDSY  219 (324)
T ss_dssp             SSGGGSCTTHHHHSEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC-TTHHHHHHHHH
T ss_pred             CCccccCHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            9999999999998753 32        3333333221       1111 223 5577888887663 34444444433

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.71  E-value=2.6e-16  Score=144.88  Aligned_cols=191  Identities=19%  Similarity=0.242  Sum_probs=122.6

Q ss_pred             CCCCCCCccc-c--cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          50 DTGVGWDDIA-G--LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        50 ~~~~~~~~l~-G--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .+..+|++++ |  .......+...+..+.          ..+.+++|+||||||||++++++++.+   +.+++++++.
T Consensus         5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A            5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            3456899987 4  4455555665554331          245789999999999999999999998   8899999987


Q ss_pred             ccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         124 SLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       124 ~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      ++.....+.........|.... ..+++|||||+|.+....       .....++..++....   ....+|+++++.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~~---~~~~iii~~~~~~~  143 (324)
T 1l8q_A           75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLYL---LEKQIILASDRHPQ  143 (324)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHHH---TTCEEEEEESSCGG
T ss_pred             HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHHH---CCCeEEEEecCChH
Confidence            7654433222211112222222 247899999999985311       112223333322211   12456677776665


Q ss_pred             ---CCCHHHhccccCcc------h---HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809         204 ---DLDEALKRRFEKRI------S---PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILI  263 (343)
Q Consensus       204 ---~l~~~l~~rf~~~i------~---r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~  263 (343)
                         .+++.+.+||....      .   +..+++..+..... .++..++.|+..+ | +.+++..+++.+...
T Consensus       144 ~l~~l~~~L~sR~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~  214 (324)
T 1l8q_A          144 KLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK  214 (324)
T ss_dssp             GCTTSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHhhhcccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence               68899999885311      1   77788877764422 2445578899999 6 688888888887766

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.70  E-value=2.4e-16  Score=146.35  Aligned_cols=187  Identities=18%  Similarity=0.155  Sum_probs=125.2

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC------Cce
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG------STF  117 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~------~~~  117 (343)
                      ..+..++.+..|++++|++++++.+...+...            ...+++|+||||+|||++|+++++.++      ..+
T Consensus        25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~   92 (353)
T 1sxj_D           25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI   92 (353)
T ss_dssp             -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred             ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence            35667788999999999999999998877532            223599999999999999999998864      457


Q ss_pred             EEEcCCccccccccchHHHHHHHHHHHHH----------------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhc
Q psy7809         118 FNVLPSSLTSKHYGESEKLVRALFETARA----------------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHM  181 (343)
Q Consensus       118 ~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----------------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l  181 (343)
                      ..+++.+....      ..+...+.....                ..+.||+|||+|.+..         ...+.|+..+
T Consensus        93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------~~~~~Ll~~l  157 (353)
T 1sxj_D           93 LELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------DAQSALRRTM  157 (353)
T ss_dssp             EEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------HHHHHHHHHH
T ss_pred             EEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------HHHHHHHHHH
Confidence            78887664221      112221111111                2345999999998832         3445666766


Q ss_pred             ccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHH
Q psy7809         182 DGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDI  253 (343)
Q Consensus       182 ~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di  253 (343)
                      +...     ....+|+++|.+..+.+.+++|+.....       ...++...+.... ..++..+..++..+.| +.+.+
T Consensus       158 e~~~-----~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~  231 (353)
T 1sxj_D          158 ETYS-----GVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRG  231 (353)
T ss_dssp             HHTT-----TTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHH
T ss_pred             HhcC-----CCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence            6542     2566777889999999999998763211       4455555443332 2345567889999987 46666


Q ss_pred             HHHHHHHHHH
Q psy7809         254 RDLCQEIILI  263 (343)
Q Consensus       254 ~~l~~~A~~~  263 (343)
                      .++++.+...
T Consensus       232 ~~~l~~~~~~  241 (353)
T 1sxj_D          232 ITLLQSASKG  241 (353)
T ss_dssp             HHHHHHTHHH
T ss_pred             HHHHHHHHHh
Confidence            6666665544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.70  E-value=3.3e-16  Score=137.20  Aligned_cols=181  Identities=16%  Similarity=0.106  Sum_probs=117.9

Q ss_pred             CCCCCcccc---cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCcc
Q psy7809          52 GVGWDDIAG---LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSL  125 (343)
Q Consensus        52 ~~~~~~l~G---~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l  125 (343)
                      ..+|++++|   .+.+.+.+...+..            ..+.+++|+||||||||++|++++.++.   ..++++++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           24 DETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             TCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            478899886   35677777766643            2457899999999999999999998874   67888888776


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE-EEEEecCCCC-
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV-LVLAATNHPW-  203 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v-~vI~ttn~~~-  203 (343)
                      ........        .  ....+.+|+|||+|.+....       .....|+..++.....   ..+ +|++++..+. 
T Consensus        92 ~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~-------~~~~~l~~~l~~~~~~---~~~~ii~~~~~~~~~  151 (242)
T 3bos_A           92 ASISTALL--------E--GLEQFDLICIDDVDAVAGHP-------LWEEAIFDLYNRVAEQ---KRGSLIVSASASPME  151 (242)
T ss_dssp             GGSCGGGG--------T--TGGGSSEEEEETGGGGTTCH-------HHHHHHHHHHHHHHHH---CSCEEEEEESSCTTT
T ss_pred             HHHHHHHH--------H--hccCCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHc---CCCeEEEEcCCCHHH
Confidence            65432111        1  11346899999999884311       1122333333322111   133 4555544444 


Q ss_pred             --CCCHHHhcccc--Ccch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy7809         204 --DLDEALKRRFE--KRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       204 --~l~~~l~~rf~--~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~  265 (343)
                        .+++.+.+||.  ..+.        +.+++...+..... .++..++.++..+.| +.+++.++++.|...|.
T Consensus       152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~  225 (242)
T 3bos_A          152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM  225 (242)
T ss_dssp             TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence              45688888874  3332        77788777754422 244557789998877 78999999998887764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.69  E-value=2e-17  Score=139.10  Aligned_cols=151  Identities=23%  Similarity=0.322  Sum_probs=106.7

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CC
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GS  115 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~  115 (343)
                      +..+..+..|++++|.+...+.+.+.+..            ....+++|+||+|||||++|+++++.+          +.
T Consensus        12 l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~   79 (187)
T 2p65_A           12 LTALARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGR   79 (187)
T ss_dssp             HHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTC
T ss_pred             HHHHHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCC
Confidence            33445567899999999999988887743            235689999999999999999999987          67


Q ss_pred             ceEEEcCCcccc--ccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         116 TFFNVLPSSLTS--KHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       116 ~~~~v~~~~l~~--~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      +++.+++..+..  .+.+.....+..++..+... .|.+|+|||+|.+............+.+.|...++.       ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~-------~~  152 (187)
T 2p65_A           80 KLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR-------GE  152 (187)
T ss_dssp             EEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-------TC
T ss_pred             eEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-------CC
Confidence            888888766542  23444555677777776655 678999999999974322111112233334344332       25


Q ss_pred             EEEEEecCCCC-----CCCHHHhccccC
Q psy7809         193 VLVLAATNHPW-----DLDEALKRRFEK  215 (343)
Q Consensus       193 v~vI~ttn~~~-----~l~~~l~~rf~~  215 (343)
                      +++|+++|.+.     .+++++++||..
T Consensus       153 ~~ii~~~~~~~~~~~~~~~~~l~~R~~~  180 (187)
T 2p65_A          153 LRCIGATTVSEYRQFIEKDKALERRFQQ  180 (187)
T ss_dssp             SCEEEEECHHHHHHHTTTCHHHHHHEEE
T ss_pred             eeEEEecCHHHHHHHHhccHHHHHhcCc
Confidence            77888888764     689999999874

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.69  E-value=1.1e-16  Score=154.59  Aligned_cols=192  Identities=22%  Similarity=0.235  Sum_probs=133.1

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----  113 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----  113 (343)
                      ..+.....+.....+..|++++|.+..++.+...+..            ....++||+||||||||++|+++|..+    
T Consensus       162 ~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~  229 (468)
T 3pxg_A          162 TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE  229 (468)
T ss_dssp             HHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            3445556666777788999999999999999888754            234689999999999999999999997    


Q ss_pred             ------CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC
Q psy7809         114 ------GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG  187 (343)
Q Consensus       114 ------~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~  187 (343)
                            +.+++.+++.   ..+.|.....+..+|..+....+.|||||      .       .....+.|+..++     
T Consensus       230 ~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~-------~~~a~~~L~~~L~-----  288 (468)
T 3pxg_A          230 VPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A-------AIDASNILKPSLA-----  288 (468)
T ss_dssp             SCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C---------------CCCTT-----
T ss_pred             CChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C-------chhHHHHHHHhhc-----
Confidence                  7788888877   55566666678889999988889999999      1       1123445555554     


Q ss_pred             CCCCCEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcCC-----CCCCcccHHHHHHHccCCC
Q psy7809         188 SGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGEI-----RKDPNVDVATLSKQLIGYS  249 (343)
Q Consensus       188 ~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~~-----~~~~~~~~~~la~~t~g~s  249 (343)
                        ...+.+|++||.+.     .+++++.+||.. +.        +..|++.++..+     ....+..+..++..+.+|.
T Consensus       289 --~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~  365 (468)
T 3pxg_A          289 --RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI  365 (468)
T ss_dssp             --SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred             --CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence              23688999999887     689999999975 43        777888776653     1124455777777776664


Q ss_pred             -----HHHHHHHHHHHHHHHH
Q psy7809         250 -----GSDIRDLCQEIILIAA  265 (343)
Q Consensus       250 -----~~di~~l~~~A~~~a~  265 (343)
                           +....++++.|...+.
T Consensus       366 ~~~~lp~~ai~ll~~a~~~~~  386 (468)
T 3pxg_A          366 SDRFLPDKAIDLIDEAGSKVR  386 (468)
T ss_dssp             CCSCTTHHHHHHHHHHHHHHH
T ss_pred             ccCcCCcHHHHHHHHHHHHHH
Confidence                 4467778887775443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.69  E-value=3.6e-17  Score=137.88  Aligned_cols=152  Identities=22%  Similarity=0.322  Sum_probs=106.2

Q ss_pred             hccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---------
Q psy7809          43 EKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---------  113 (343)
Q Consensus        43 ~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------  113 (343)
                      ...+.....+..|++++|.++..+.+...+..            ..+.+++|+||||||||++|+++++.+         
T Consensus         9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~   76 (195)
T 1jbk_A            9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGL   76 (195)
T ss_dssp             EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGG
T ss_pred             hHHHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence            34455556677899999999999998887753            245689999999999999999999986         


Q ss_pred             -CCceEEEcCCccc--cccccchHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809         114 -GSTFFNVLPSSLT--SKHYGESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG  189 (343)
Q Consensus       114 -~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  189 (343)
                       +.+++.+++..+.  ..+.+.....+..++..+.. ..+.||+|||+|.+...... .....+.+.+...++       
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-~~~~~~~~~l~~~~~-------  148 (195)
T 1jbk_A           77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DGAMDAGNMLKPALA-------  148 (195)
T ss_dssp             TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHHH-------
T ss_pred             cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-cchHHHHHHHHHhhc-------
Confidence             6788888887765  23445555667777776543 45779999999999753211 011112223333332       


Q ss_pred             CCCEEEEEecCCCC-----CCCHHHhcccc
Q psy7809         190 DKGVLVLAATNHPW-----DLDEALKRRFE  214 (343)
Q Consensus       190 ~~~v~vI~ttn~~~-----~l~~~l~~rf~  214 (343)
                      ..++.+|+++|.+.     .+++++.+||.
T Consensus       149 ~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~  178 (195)
T 1jbk_A          149 RGELHCVGATTLDEYRQYIEKDAALERRFQ  178 (195)
T ss_dssp             TTSCCEEEEECHHHHHHHTTTCHHHHTTEE
T ss_pred             cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc
Confidence            12567888888775     68999999986

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.69  E-value=1.4e-16  Score=149.75  Aligned_cols=127  Identities=25%  Similarity=0.389  Sum_probs=80.7

Q ss_pred             cccccHHHHHHHHHHHhccccChHH------------------HhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQL------------------FKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~------------------~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      .|+|++.+++.|...+.........                  ......++.++||+||||||||++|+++|+.++.+++
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~  101 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA  101 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            5899999999999877432221111                  0112345678999999999999999999999999999


Q ss_pred             EEcCCcccc-ccccch-HHHHHHHHHHH----HHcCCcEEEEcccccccCCCCc-----hhhhHHHHHHHhhhccc
Q psy7809         119 NVLPSSLTS-KHYGES-EKLVRALFETA----RARAPAVIFIDEVDAFCSGSRE-----HEATRRVRCELLSHMDG  183 (343)
Q Consensus       119 ~v~~~~l~~-~~~~~~-~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~~-----~~~~~~~~~~ll~~l~~  183 (343)
                      .+++..+.. .+.+.. ...+..++...    ....++||||||+|.+......     ......+++.|+..|++
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~  177 (376)
T 1um8_A          102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG  177 (376)
T ss_dssp             EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC
T ss_pred             EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhc
Confidence            999987752 333332 33455555432    2335689999999999753111     01112367788888874

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.1e-16  Score=144.10  Aligned_cols=193  Identities=9%  Similarity=0.086  Sum_probs=125.8

Q ss_pred             ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcCCcccc
Q psy7809          58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLPSSLTS  127 (343)
Q Consensus        58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~~~l~~  127 (343)
                      |.|.++..+.+..++.....        ...+.+++|+||||||||++++.+++++          ...+++++|..+.+
T Consensus        22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t   93 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG   93 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred             cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence            67778888877776653221        1567899999999999999999999998          34688899876543


Q ss_pred             cc----------------ccchHHHHHHHHHHH--HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809         128 KH----------------YGESEKLVRALFETA--RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG  189 (343)
Q Consensus       128 ~~----------------~~~~~~~i~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  189 (343)
                      .+                .+.....+...|...  ....+.||+|||+|.|.        ...++..|+.+...     .
T Consensus        94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--------~q~~L~~l~~~~~~-----~  160 (318)
T 3te6_A           94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--------SEKILQYFEKWISS-----K  160 (318)
T ss_dssp             -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------CTHHHHHHHHHHHC-----S
T ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------cchHHHHHHhcccc-----c
Confidence            21                123455677777764  34457899999999996        12455556654321     1


Q ss_pred             CCCEEEEEecCCCCCC----CHHHhcccc-Ccch--------HHHHHhhhhcCCCC------------------------
Q psy7809         190 DKGVLVLAATNHPWDL----DEALKRRFE-KRIS--------PIQIIGLCLGEIRK------------------------  232 (343)
Q Consensus       190 ~~~v~vI~ttn~~~~l----~~~l~~rf~-~~i~--------r~~il~~~~~~~~~------------------------  232 (343)
                      ..+++||+++|..+..    ++.+.+||. ..+.        ..+|++..+.....                        
T Consensus       161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  240 (318)
T 3te6_A          161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQ  240 (318)
T ss_dssp             SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC------
T ss_pred             CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            3478999999998754    344566775 2333        44555555443210                        


Q ss_pred             ------------CCcccHHHHHHHccCCCHHHHH---HHHHHHHHHHHHHHHHhc
Q psy7809         233 ------------DPNVDVATLSKQLIGYSGSDIR---DLCQEIILIAAREVIQNA  272 (343)
Q Consensus       233 ------------~~~~~~~~la~~t~g~s~~di~---~l~~~A~~~a~~r~~~~~  272 (343)
                                  ..+..+..+|+.++. ..+|++   ++|++|+..|.++...+.
T Consensus       241 ~~~~~~~~~~~~i~~~ai~~~A~~vA~-~~GD~R~Al~ilr~A~~~ae~e~~~k~  294 (318)
T 3te6_A          241 KIPDNVIVINHKINNKITQLIAKNVAN-VSGSTEKAFKICEAAVEISKKDFVRKG  294 (318)
T ss_dssp             --CTTEEEECEECCHHHHHHHHHHHHH-HHCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence                        123346667764321 233443   799999999999887643

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.67  E-value=6.7e-16  Score=145.01  Aligned_cols=186  Identities=14%  Similarity=0.109  Sum_probs=124.0

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----------CCceEEEcCCc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----------GSTFFNVLPSS  124 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----------~~~~~~v~~~~  124 (343)
                      ++++|.++.++.+...+.....        ...+.+++|+||||||||++|+++++++           +.++++++|..
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~   91 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE   91 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence            7899999999999887753211        1345689999999999999999999987           88999998765


Q ss_pred             cc-cc-----------------cccc-hHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHH-HHHHhhhcccC
Q psy7809         125 LT-SK-----------------HYGE-SEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRV-RCELLSHMDGV  184 (343)
Q Consensus       125 l~-~~-----------------~~~~-~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~-~~~ll~~l~~~  184 (343)
                      .. ..                 ..+. ....+..++..+.... .||+|||+|.+....     .... +..|+...   
T Consensus        92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~-----~~~~~l~~l~~~~---  162 (384)
T 2qby_B           92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR-----GGDIVLYQLLRSD---  162 (384)
T ss_dssp             HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST-----TSHHHHHHHHTSS---
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC-----CCceeHHHHhcCC---
Confidence            43 10                 0011 1233444444443333 399999999985321     1123 44444433   


Q ss_pred             CCCCCCCCEEEEEecCCC---CCCCHHHhccccCcch--------HHHHHhhhhcC-C--CCCCcccHHHHHHHcc---C
Q psy7809         185 GTGSGDKGVLVLAATNHP---WDLDEALKRRFEKRIS--------PIQIIGLCLGE-I--RKDPNVDVATLSKQLI---G  247 (343)
Q Consensus       185 ~~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~~i~--------r~~il~~~~~~-~--~~~~~~~~~~la~~t~---g  247 (343)
                            .++.+|++||.+   ..+++.+.+||...+.        ...+++..+.. .  ...++..++.++..+.   |
T Consensus       163 ------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G  236 (384)
T 2qby_B          163 ------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG  236 (384)
T ss_dssp             ------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred             ------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence                  268899999987   6789999999866554        55666665542 1  1223445778888887   4


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy7809         248 YSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       248 ~s~~di~~l~~~A~~~a~  265 (343)
                       ..+.+.++++.|...|.
T Consensus       237 -~~r~a~~~l~~a~~~a~  253 (384)
T 2qby_B          237 -DARKAVNLLFRAAQLAS  253 (384)
T ss_dssp             -CHHHHHHHHHHHHHHTT
T ss_pred             -CHHHHHHHHHHHHHHhc
Confidence             45666677777765543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.67  E-value=8e-15  Score=135.57  Aligned_cols=196  Identities=22%  Similarity=0.234  Sum_probs=127.6

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      +.....+.+|++++|++.+++.+...+....     .  ...++.+++|+||||+|||||++++|..++.++...+...+
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-----~--~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~   87 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAK-----M--RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL   87 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-----H--HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHH-----h--cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence            4556677799999999999988887664210     0  01345689999999999999999999999988776654433


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC------CC-------CCCC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT------GS-------GDKG  192 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~------~~-------~~~~  192 (343)
                      ..      ...+..++..  ...+.|+||||++.+..         .....|+..++....      ..       ....
T Consensus        88 ~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~  150 (334)
T 1in4_A           88 VK------QGDMAAILTS--LERGDVLFIDEIHRLNK---------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP  150 (334)
T ss_dssp             CS------HHHHHHHHHH--CCTTCEEEEETGGGCCH---------HHHHHHHHHHHTSCCCC---------------CC
T ss_pred             cC------HHHHHHHHHH--ccCCCEEEEcchhhcCH---------HHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence            21      1123333221  12457999999998842         122223332322110      00       0124


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIILI  263 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~~  263 (343)
                      +.++++++.+..|++.+++||...+.        ..++++........ .++..+..||..+.| +++.+..+++++...
T Consensus       151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~  229 (334)
T 1in4_A          151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM  229 (334)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence            67788999999999999999864332        55666655543322 234457789999988 678888999888777


Q ss_pred             HHH
Q psy7809         264 AAR  266 (343)
Q Consensus       264 a~~  266 (343)
                      |..
T Consensus       230 a~~  232 (334)
T 1in4_A          230 LTV  232 (334)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.66  E-value=5e-15  Score=139.13  Aligned_cols=194  Identities=12%  Similarity=0.049  Sum_probs=127.0

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCc--eEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCcccc
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWR--GILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTS  127 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~--~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~  127 (343)
                      ..++++|.+..++.+...+.....      +  ..+.  +++|+||+|+|||+++++++..+    +..+++++|.....
T Consensus        15 ~p~~l~gr~~~~~~l~~~l~~~~~------~--~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~   86 (389)
T 1fnn_A           15 VPKRLPHREQQLQQLDILLGNWLR------N--PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN   86 (389)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHH------S--TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHc------C--CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence            347899999999999887753211      1  2334  89999999999999999999998    56788888765432


Q ss_pred             cc----------------cc-chHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809         128 KH----------------YG-ESEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG  189 (343)
Q Consensus       128 ~~----------------~~-~~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  189 (343)
                      ..                .+ ........+...... ..|.||+|||+|.+         ....+..|+..++...... 
T Consensus        87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------~~~~~~~L~~~~~~~~~~~-  156 (389)
T 1fnn_A           87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------APDILSTFIRLGQEADKLG-  156 (389)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---------CHHHHHHHHHHTTCHHHHS-
T ss_pred             HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---------chHHHHHHHHHHHhCCCCC-
Confidence            10                01 112223333333322 34789999999988         2245556666665432100 


Q ss_pred             CCCEEEEEecCCC---CCCCHHHhccccC-cch--------HHHHHhhhhcC---CCCCCcccHHHHHHHc---------
Q psy7809         190 DKGVLVLAATNHP---WDLDEALKRRFEK-RIS--------PIQIIGLCLGE---IRKDPNVDVATLSKQL---------  245 (343)
Q Consensus       190 ~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~--------r~~il~~~~~~---~~~~~~~~~~~la~~t---------  245 (343)
                      ..++.+|+++|.+   ..+++.+.+||.. .+.        ..+++...+..   ....++..+..++..+         
T Consensus       157 ~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  236 (389)
T 1fnn_A          157 AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN  236 (389)
T ss_dssp             SCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred             cCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCC
Confidence            1368899999988   6788888888875 333        44555554433   1223455678899998         


Q ss_pred             cCCCHHHHHHHHHHHHHHHHH
Q psy7809         246 IGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       246 ~g~s~~di~~l~~~A~~~a~~  266 (343)
                      .| .++.+.++++.|...|..
T Consensus       237 ~G-~~r~~~~~l~~a~~~a~~  256 (389)
T 1fnn_A          237 RG-DARLAIDILYRSAYAAQQ  256 (389)
T ss_dssp             SC-CHHHHHHHHHHHHHHHHH
T ss_pred             CC-cHHHHHHHHHHHHHHHHH
Confidence            45 578888888888877653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.66  E-value=7.9e-16  Score=142.77  Aligned_cols=195  Identities=19%  Similarity=0.216  Sum_probs=113.7

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEE----EcCCcc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN----VLPSSL  125 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~----v~~~~l  125 (343)
                      .++..|++++|++.+++.+......+            ...++||+||||||||++|+++++.++...+.    ++|...
T Consensus        18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~   85 (350)
T 1g8p_A           18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV   85 (350)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred             CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence            45678999999999888765444321            23469999999999999999999988631110    112111


Q ss_pred             cc---------------------ccccchHHH------HHHHHHHH---------HHcCCcEEEEcccccccCCCCchhh
Q psy7809         126 TS---------------------KHYGESEKL------VRALFETA---------RARAPAVIFIDEVDAFCSGSREHEA  169 (343)
Q Consensus       126 ~~---------------------~~~~~~~~~------i~~~~~~a---------~~~~p~il~iDeid~l~~~~~~~~~  169 (343)
                      ..                     ...+.....      +...+...         ....+++|||||+|.+..       
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~-------  158 (350)
T 1g8p_A           86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED-------  158 (350)
T ss_dssp             GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------
T ss_pred             ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-------
Confidence            00                     001111111      01111111         111357999999998832       


Q ss_pred             hHHHHHHHhhhccc----CCCCC----CCCCEEEEEecCCCC-CCCHHHhccccCcch---------HHHHHhhhh----
Q psy7809         170 TRRVRCELLSHMDG----VGTGS----GDKGVLVLAATNHPW-DLDEALKRRFEKRIS---------PIQIIGLCL----  227 (343)
Q Consensus       170 ~~~~~~~ll~~l~~----~~~~~----~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~---------r~~il~~~~----  227 (343)
                        ...+.|+..++.    +....    .+.++++|+|+|... .+++++++||...+.         +.+|++..+    
T Consensus       159 --~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~  236 (350)
T 1g8p_A          159 --HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDA  236 (350)
T ss_dssp             --HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhccc
Confidence              344455555542    11111    012688999999744 799999999976444         446665421    


Q ss_pred             ---------------------------cCCCCCCcccHHHHHHHccCC---CHHHHHHHHHHHHHHHHH
Q psy7809         228 ---------------------------GEIRKDPNVDVATLSKQLIGY---SGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       228 ---------------------------~~~~~~~~~~~~~la~~t~g~---s~~di~~l~~~A~~~a~~  266 (343)
                                                 .... .++..+..|+....+.   +.+.+..+++.|...|..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~  304 (350)
T 1g8p_A          237 DPKAFLEEWRPKDMDIRNQILEARERLPKVE-APNTALYDCAALCIALGSDGLRGELTLLRSARALAAL  304 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCB-CCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHH
T ss_pred             CchhhccccccchHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHH
Confidence                                       1111 2334455666655442   568888888887777653

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.66  E-value=7.6e-16  Score=140.80  Aligned_cols=187  Identities=20%  Similarity=0.139  Sum_probs=124.8

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFN  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~  119 (343)
                      .+.+++.+..|++++|++.+++.+...+...            ...++||+||||+|||++|+++++.+     +.+++.
T Consensus         6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~   73 (319)
T 2chq_A            6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE   73 (319)
T ss_dssp             CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred             cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence            4567888999999999999999988766431            22349999999999999999999986     345788


Q ss_pred             EcCCccccccccchHHHHHHHHHHH-H-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEE
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETA-R-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLA  197 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a-~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~  197 (343)
                      +++.+..+.  ......+..+.... . ...+.||+|||+|.+.         ....+.|+..++..     ..++.+|+
T Consensus        74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~L~~~le~~-----~~~~~~i~  137 (319)
T 2chq_A           74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT---------ADAQAALRRTMEMY-----SKSCRFIL  137 (319)
T ss_dssp             EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC---------HHHHHTTGGGTSSS-----SSSEEEEE
T ss_pred             EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC---------HHHHHHHHHHHHhc-----CCCCeEEE
Confidence            887764331  11112222221110 0 1346899999999883         24456777777653     34688999


Q ss_pred             ecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         198 ATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       198 ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      ++|.+..+.+.+.+|+...-.       ...++...+..... .++..+..++..+.| +.+.+.++++.+
T Consensus       138 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~  207 (319)
T 2chq_A          138 SCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA  207 (319)
T ss_dssp             EESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred             EeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            999999999999998752221       45555555554422 234456778877766 455555555544

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.66  E-value=5.8e-16  Score=144.85  Aligned_cols=185  Identities=22%  Similarity=0.221  Sum_probs=125.3

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---------
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---------  116 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---------  116 (343)
                      +.+++.+..|++++|++.+++.+...+...           ..+..++|+||+|+|||++|+++++.++..         
T Consensus         6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~   74 (373)
T 1jr3_A            6 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG   74 (373)
T ss_dssp             HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred             HHHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence            456678889999999999999999877532           344578999999999999999999988642         


Q ss_pred             ---------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHH
Q psy7809         117 ---------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCEL  177 (343)
Q Consensus       117 ---------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~l  177 (343)
                                     ++.++....  ...    ..++.++..+..    ..+.||+|||+|.+.         ....+.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~L  139 (373)
T 1jr3_A           75 VCDNCREIEQGRFVDLIEIDAASR--TKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------RHSFNAL  139 (373)
T ss_dssp             SSHHHHHHHTSCCSSCEEEETTCS--CCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSC---------HHHHHHH
T ss_pred             ccHHHHHHhccCCCceEEeccccc--CCH----HHHHHHHHHHhhccccCCeEEEEEECcchhc---------HHHHHHH
Confidence                           222222110  011    124444444432    236799999999883         2345667


Q ss_pred             hhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCC
Q psy7809         178 LSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYS  249 (343)
Q Consensus       178 l~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s  249 (343)
                      +..++..     +.++++|++|+.+..+.+.+.+|+...-.       ...+++..+...... ++..+..++..+.| +
T Consensus       140 l~~le~~-----~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~  213 (373)
T 1jr3_A          140 LKTLEEP-----PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S  213 (373)
T ss_dssp             HHHHHSC-----CSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred             HHHHhcC-----CCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence            7777643     34788888899888899999987632111       455555555433222 34447789999977 6


Q ss_pred             HHHHHHHHHHHHH
Q psy7809         250 GSDIRDLCQEIIL  262 (343)
Q Consensus       250 ~~di~~l~~~A~~  262 (343)
                      .+++.++++.+..
T Consensus       214 ~r~~~~~l~~~~~  226 (373)
T 1jr3_A          214 LRDALSLTDQAIA  226 (373)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.66  E-value=6e-16  Score=141.30  Aligned_cols=201  Identities=19%  Similarity=0.251  Sum_probs=131.5

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc--
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY--  130 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~--  130 (343)
                      ++++|++.+++.+...+......   ......+..+++|+||||||||++|++++..+   +.+++.++|..+.....  
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS   93 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHT---CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence            36889999999998877542100   00011234579999999999999999999988   45689998877653210  


Q ss_pred             ----------cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEE
Q psy7809         131 ----------GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVL  194 (343)
Q Consensus       131 ----------~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~  194 (343)
                                +...  ...+.........++|||||+|.+.         ..+.+.|+..++......      ...+++
T Consensus        94 ~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~---------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i  162 (311)
T 4fcw_A           94 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAH---------PDVFNILLQMLDDGRLTDSHGRTVDFRNTV  162 (311)
T ss_dssp             HHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSC---------HHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred             HhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcC---------HHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence                      1000  0122223333445899999999883         355667777665422110      013677


Q ss_pred             EEEecCC--------------------------CCCCCHHHhccccCcch--------HHHHHhhhhcCC----------
Q psy7809         195 VLAATNH--------------------------PWDLDEALKRRFEKRIS--------PIQIIGLCLGEI----------  230 (343)
Q Consensus       195 vI~ttn~--------------------------~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~----------  230 (343)
                      +|+|||.                          ...+++.+++||+..+.        +..|++.++...          
T Consensus       163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~  242 (311)
T 4fcw_A          163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS  242 (311)
T ss_dssp             EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred             EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence            9999998                          34578888899865554        556666655442          


Q ss_pred             CCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         231 RKDPNVDVATLSKQLI--GYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       231 ~~~~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      ...++..+..|+...-  .++.++|++++++++..+..+...
T Consensus       243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~  284 (311)
T 4fcw_A          243 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL  284 (311)
T ss_dssp             EEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred             EEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence            1113344667777664  567899999999999988877765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.65  E-value=5.1e-16  Score=160.43  Aligned_cols=208  Identities=20%  Similarity=0.233  Sum_probs=135.7

Q ss_pred             hHHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---
Q psy7809          37 ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---  113 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---  113 (343)
                      ...+.+..++.....+..|++++|.++.++.+...+..            ....+++|+||||||||++|+++|..+   
T Consensus       151 ~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~  218 (854)
T 1qvr_A          151 NALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKG  218 (854)
T ss_dssp             SHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            35566667777777888999999999999998887753            244679999999999999999999987   


Q ss_pred             -------CCceEEEcCCccc--cccccchHHHHHHHHHHHHHc-CCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc
Q psy7809         114 -------GSTFFNVLPSSLT--SKHYGESEKLVRALFETARAR-APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG  183 (343)
Q Consensus       114 -------~~~~~~v~~~~l~--~~~~~~~~~~i~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~  183 (343)
                             +.+++.+++..+.  ..+.+.....+..+|..+... .|+||||||+|.+.+..... ......+.|...++.
T Consensus       219 ~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-g~~~~~~~L~~~l~~  297 (854)
T 1qvr_A          219 DVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GAVDAGNMLKPALAR  297 (854)
T ss_dssp             CSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHHT
T ss_pred             CCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-chHHHHHHHHHHHhC
Confidence                   7889999998886  456777888899999988775 68899999999997532221 112233344444432


Q ss_pred             CCCCCCCCCEEEEEecCCCC----CCCHHHhccccCcch--------HHHHHhhhhcCC----C-CCCcccHHHHHHHcc
Q psy7809         184 VGTGSGDKGVLVLAATNHPW----DLDEALKRRFEKRIS--------PIQIIGLCLGEI----R-KDPNVDVATLSKQLI  246 (343)
Q Consensus       184 ~~~~~~~~~v~vI~ttn~~~----~l~~~l~~rf~~~i~--------r~~il~~~~~~~----~-~~~~~~~~~la~~t~  246 (343)
                             ..+.+|++|+.++    .+++++.+||.. +.        +..|++.++...    . ...+..+..++..+.
T Consensus       298 -------~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~  369 (854)
T 1qvr_A          298 -------GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH  369 (854)
T ss_dssp             -------TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred             -------CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence                   2577888888764    478999999986 43        777777665432    1 113344566666654


Q ss_pred             -----CCCHHHHHHHHHHHHHHHH
Q psy7809         247 -----GYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       247 -----g~s~~di~~l~~~A~~~a~  265 (343)
                           +|.+....++++.|...+.
T Consensus       370 r~i~~~~lp~kai~lldea~a~~~  393 (854)
T 1qvr_A          370 RYITERRLPDKAIDLIDEAAARLR  393 (854)
T ss_dssp             HHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred             hhcccccChHHHHHHHHHHHHHHH
Confidence                 4557777777777766554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.65  E-value=4.3e-16  Score=159.18  Aligned_cols=192  Identities=22%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             HHHHhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----
Q psy7809          38 LTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----  113 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----  113 (343)
                      ..+.....+.....+..+++++|.++.++.+...+..            ....++||+||||||||++|+++|..+    
T Consensus       162 ~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~  229 (758)
T 3pxi_A          162 TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE  229 (758)
T ss_dssp             HHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            4455556666777788999999999999999988754            244689999999999999999999997    


Q ss_pred             ------CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC
Q psy7809         114 ------GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG  187 (343)
Q Consensus       114 ------~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~  187 (343)
                            +.+++.+++   ...+.|..+..+..+|..+....|+|||||      .       .....+.|+..++     
T Consensus       230 ~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~-------~~~~~~~L~~~l~-----  288 (758)
T 3pxi_A          230 VPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------A-------AIDASNILKPSLA-----  288 (758)
T ss_dssp             SCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C---------------CCCTT-----
T ss_pred             CChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------C-------chhHHHHHHHHHh-----
Confidence                  778888877   455667777788999999998889999999      1       1123445555554     


Q ss_pred             CCCCCEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcCCCC-----CCcccHHHHHHHcc---
Q psy7809         188 SGDKGVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-----DPNVDVATLSKQLI---  246 (343)
Q Consensus       188 ~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-----~~~~~~~~la~~t~---  246 (343)
                        ...+.+|++||...     .+++++++||.. +.        +..|++.+......     ..+..+..++..+.   
T Consensus       289 --~~~v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i  365 (758)
T 3pxi_A          289 --RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI  365 (758)
T ss_dssp             --SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred             --cCCEEEEeCCChHHHHHHhhccHHHHhhCcE-EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence              23688999999888     799999999954 44        77888876665311     23344566666554   


Q ss_pred             --CCCHHHHHHHHHHHHHHHH
Q psy7809         247 --GYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       247 --g~s~~di~~l~~~A~~~a~  265 (343)
                        ++.+.....++..|...+.
T Consensus       366 ~~~~~p~~ai~ll~~a~~~~~  386 (758)
T 3pxi_A          366 SDRFLPDKAIDLIDEAGSKVR  386 (758)
T ss_dssp             CCSCTTHHHHHHHHHHHHHHH
T ss_pred             ccCcCCcHHHHHHHHHHHHHH
Confidence              4566777778887776554

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.64  E-value=4e-15  Score=136.47  Aligned_cols=189  Identities=19%  Similarity=0.175  Sum_probs=124.1

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-----CceE
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-----STFF  118 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~  118 (343)
                      ..+..++.+..|++++|++++++.+...+...            ...+++|+||||+|||++|+++++.+.     ..++
T Consensus        13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~   80 (327)
T 1iqp_A           13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL   80 (327)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred             CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence            45677889999999999999999999877532            233599999999999999999999863     2467


Q ss_pred             EEcCCccccccccchHHHHHHHHHHH-H-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEE
Q psy7809         119 NVLPSSLTSKHYGESEKLVRALFETA-R-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVL  196 (343)
Q Consensus       119 ~v~~~~l~~~~~~~~~~~i~~~~~~a-~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI  196 (343)
                      .+++.+..+.  ......+....... . ...+.||+|||+|.+.         ....+.|+..++..     ..++.+|
T Consensus        81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~L~~~le~~-----~~~~~~i  144 (327)
T 1iqp_A           81 ELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT---------QDAQQALRRTMEMF-----SSNVRFI  144 (327)
T ss_dssp             EEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC---------HHHHHHHHHHHHHT-----TTTEEEE
T ss_pred             EeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC---------HHHHHHHHHHHHhc-----CCCCeEE
Confidence            7776543211  11111122111100 0 1346799999999883         23455666766643     2367888


Q ss_pred             EecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         197 AATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       197 ~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      +++|.+..+.+.+.+|+...-.       ...+++..+..... .++..++.++..+.| +.+.+.++++.+.
T Consensus       145 ~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~  216 (327)
T 1iqp_A          145 LSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA  216 (327)
T ss_dssp             EEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             EEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            8999999999999998752211       34445544443322 234456788888866 5666666666544

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.64  E-value=3e-15  Score=138.14  Aligned_cols=155  Identities=23%  Similarity=0.203  Sum_probs=100.5

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc--
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS--  124 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~--  124 (343)
                      +.+..+..+++++|++++++.+...+..              +.++||+||||||||++|+++|+.++.+++.+++..  
T Consensus        18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~   83 (331)
T 2r44_A           18 IKEVIDEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL   83 (331)
T ss_dssp             HHHHHHHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             HHHHHHHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC
Confidence            3444445578899999999988876642              258999999999999999999999999999888731  


Q ss_pred             ----cccccccchHHHHHHHHHHHHHcC---CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC------CCCCC
Q psy7809         125 ----LTSKHYGESEKLVRALFETARARA---PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT------GSGDK  191 (343)
Q Consensus       125 ----l~~~~~~~~~~~i~~~~~~a~~~~---p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~  191 (343)
                          +.+........   ..|  .....   .+||||||+|.+.         ....+.|+..++....      ...+.
T Consensus        84 ~~~~l~g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~---------~~~~~~Ll~~l~~~~~~~~g~~~~~~~  149 (331)
T 2r44_A           84 LPSDLIGTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSP---------AKVQSALLECMQEKQVTIGDTTYPLDN  149 (331)
T ss_dssp             CHHHHHEEEEEETTT---TEE--EEEECTTCSSEEEEETGGGSC---------HHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred             ChhhcCCceeecCCC---Cce--EeccCcccccEEEEEccccCC---------HHHHHHHHHHHhcCceeeCCEEEECCC
Confidence                11111100000   000  00011   2699999999873         2344555555543110      01133


Q ss_pred             CEEEEEecCCCC-----CCCHHHhccccCcch--------HHHHHhhhhcC
Q psy7809         192 GVLVLAATNHPW-----DLDEALKRRFEKRIS--------PIQIIGLCLGE  229 (343)
Q Consensus       192 ~v~vI~ttn~~~-----~l~~~l~~rf~~~i~--------r~~il~~~~~~  229 (343)
                      +++||+|+|..+     .+++++++||...+.        +.+|++..+..
T Consensus       150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~  200 (331)
T 2r44_A          150 PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM  200 (331)
T ss_dssp             SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred             CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence            678888888543     389999999975444        77788776654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.63  E-value=5.7e-15  Score=138.29  Aligned_cols=195  Identities=20%  Similarity=0.160  Sum_probs=127.3

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh------CCceEEEcCCccc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH------GSTFFNVLPSSLT  126 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l------~~~~~~v~~~~l~  126 (343)
                      ...++++|.+..++.+...+.....        ...+..++|+||+|+|||+++++++..+      +..+++++|....
T Consensus        17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~   88 (386)
T 2qby_A           17 YIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID   88 (386)
T ss_dssp             CCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence            3457899999999999887653211        1455689999999999999999999988      8889998875432


Q ss_pred             cc----------------cccc-hHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC
Q psy7809         127 SK----------------HYGE-SEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS  188 (343)
Q Consensus       127 ~~----------------~~~~-~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~  188 (343)
                      ..                ..+. ....+..++....... |.||+|||++.+.....     ...+..++..++...   
T Consensus        89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----~~~l~~l~~~~~~~~---  160 (386)
T 2qby_A           89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----DDILYKLSRINSEVN---  160 (386)
T ss_dssp             SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----STHHHHHHHHHHSCC---
T ss_pred             CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----CHHHHHHhhchhhcC---
Confidence            10                0111 2333445555444443 88999999999854211     234556666654431   


Q ss_pred             CCCCEEEEEecCCC---CCCCHHHhccccC-cch--------HHHHHhhhhcCC---CCCCcccHHHHHHHcc---CCCH
Q psy7809         189 GDKGVLVLAATNHP---WDLDEALKRRFEK-RIS--------PIQIIGLCLGEI---RKDPNVDVATLSKQLI---GYSG  250 (343)
Q Consensus       189 ~~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~--------r~~il~~~~~~~---~~~~~~~~~~la~~t~---g~s~  250 (343)
                       ..++.+|++++.+   ..+++.+.+||.. .+.        ..+++...+...   ....+..+..++..+.   | ++
T Consensus       161 -~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~  238 (386)
T 2qby_A          161 -KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DA  238 (386)
T ss_dssp             -C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CH
T ss_pred             -CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CH
Confidence             3378889999877   4577888888754 333        555665544321   1223444677888876   6 57


Q ss_pred             HHHHHHHHHHHHHHH
Q psy7809         251 SDIRDLCQEIILIAA  265 (343)
Q Consensus       251 ~di~~l~~~A~~~a~  265 (343)
                      +.+.++++.|...+.
T Consensus       239 r~~~~ll~~a~~~a~  253 (386)
T 2qby_A          239 RRALDLLRVSGEIAE  253 (386)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777788888876665

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.62  E-value=4.2e-15  Score=136.07  Aligned_cols=184  Identities=14%  Similarity=0.088  Sum_probs=125.6

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFN  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~  119 (343)
                      .+..++.+..|++++|++.+++.+...+...           ..+ +++|+||+|+|||++|+++++.+     +..++.
T Consensus        10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~   77 (323)
T 1sxj_B           10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLE   77 (323)
T ss_dssp             CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred             cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence            3456678889999999999999999887532           223 49999999999999999999986     345777


Q ss_pred             EcCCccccccccchHHHHHHHHHHHH-------HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETAR-------ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a~-------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      +++.+..+      ...++.++....       ...+.||+|||+|.+..         ...+.|+..++..     ..+
T Consensus        78 ~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~le~~-----~~~  137 (323)
T 1sxj_B           78 LNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------GAQQALRRTMELY-----SNS  137 (323)
T ss_dssp             ECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------HHHHTTHHHHHHT-----TTT
T ss_pred             ecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------HHHHHHHHHHhcc-----CCC
Confidence            87765321      233444444433       22368999999998832         3355666666643     336


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEII  261 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~  261 (343)
                      +.+|++||.+..+.+.+.+|+...-.       ...++...+..... .++..+..++..+.| +.+.+.++++.+.
T Consensus       138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~  213 (323)
T 1sxj_B          138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV  213 (323)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            78888899999999999998652211       44555554433221 234557788888877 4666666665544

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.62  E-value=1.1e-15  Score=149.43  Aligned_cols=201  Identities=19%  Similarity=0.164  Sum_probs=118.9

Q ss_pred             ccccccCCCCCCCcccccHHHHHHHHHHHhccccCh-HHHhc----cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          44 KDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMP-QLFKG----ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~-~~~~~----~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ..+.+++++.+|++|+|++.+++.|...+....... ..+..    ...++.++||+||||||||++|+++|++++.+++
T Consensus        27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i  106 (516)
T 1sxj_A           27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL  106 (516)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            456778899999999999999999999886421110 00110    1124579999999999999999999999999999


Q ss_pred             EEcCCccccccccchH-------HHHHHHHHHH-----HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         119 NVLPSSLTSKHYGESE-------KLVRALFETA-----RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       119 ~v~~~~l~~~~~~~~~-------~~i~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                      ++++.++.........       ..+..+|..+     ....++||||||+|.+.....      ..+..|+..++..  
T Consensus       107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~------~~l~~L~~~l~~~--  178 (516)
T 1sxj_A          107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------GGVGQLAQFCRKT--  178 (516)
T ss_dssp             EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------THHHHHHHHHHHC--
T ss_pred             EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH------HHHHHHHHHHHhc--
Confidence            9999886553211000       0011222222     124578999999999965322      1234455554432  


Q ss_pred             CCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCC-CCCcccHHHHHHHccCCCHHHHHHHH
Q psy7809         187 GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIR-KDPNVDVATLSKQLIGYSGSDIRDLC  257 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~-~~~~~~~~~la~~t~g~s~~di~~l~  257 (343)
                         ...+++|+++.....+. .+.+|+. .+.        +..++...+.... ..++..+..|++.+.| ..+.+.+++
T Consensus       179 ---~~~iIli~~~~~~~~l~-~l~~r~~-~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L  252 (516)
T 1sxj_A          179 ---STPLILICNERNLPKMR-PFDRVCL-DIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLL  252 (516)
T ss_dssp             ---SSCEEEEESCTTSSTTG-GGTTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHH
T ss_pred             ---CCCEEEEEcCCCCccch-hhHhceE-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHH
Confidence               12455555444334444 3444322 222        4455554443321 1234458889988866 344444444


Q ss_pred             H
Q psy7809         258 Q  258 (343)
Q Consensus       258 ~  258 (343)
                      +
T Consensus       253 ~  253 (516)
T 1sxj_A          253 S  253 (516)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.61  E-value=4.8e-15  Score=137.80  Aligned_cols=187  Identities=13%  Similarity=0.144  Sum_probs=118.4

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHH-hccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--------
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETL-LLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--------  115 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--------  115 (343)
                      .+.+++.+.+|++++|++.+++.+...+ ...           ..+. ++|+||+|+|||+++++++.++..        
T Consensus         3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~-----------~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~   70 (354)
T 1sxj_E            3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPR-----------DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKI   70 (354)
T ss_dssp             -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTT-----------CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred             cchhccCCCCHHHhcCCHHHHHHHHHHHhhCC-----------CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence            4678899999999999999999988766 221           2333 999999999999999999996521        


Q ss_pred             ---------------------ceEEEcCCccccccccchHHHHHHHHHHHH--------------HcCCcEEEEcccccc
Q psy7809         116 ---------------------TFFNVLPSSLTSKHYGESEKLVRALFETAR--------------ARAPAVIFIDEVDAF  160 (343)
Q Consensus       116 ---------------------~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~--------------~~~p~il~iDeid~l  160 (343)
                                           .++.++..+...   . ....++..+..+.              ...|.||+|||++.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L  146 (354)
T 1sxj_E           71 DVRQFVTASNRKLELNVVSSPYHLEITPSDMGN---N-DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL  146 (354)
T ss_dssp             ---------------CCEECSSEEEECCC-------C-CHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS
T ss_pred             cceeecccccccceeeeecccceEEecHhhcCC---c-chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc
Confidence                                 122222211100   0 0112333333321              235679999999986


Q ss_pred             cCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-
Q psy7809         161 CSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-  232 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-  232 (343)
                      .         ....+.|++.++...     .+..+|.+|+.++.+.+.+++|+...-.       ...+++..+..... 
T Consensus       147 ~---------~~~~~~L~~~le~~~-----~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~  212 (354)
T 1sxj_E          147 T---------KDAQAALRRTMEKYS-----KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ  212 (354)
T ss_dssp             C---------HHHHHHHHHHHHHST-----TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred             C---------HHHHHHHHHHHHhhc-----CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence            2         234556666666542     2578888899999999999998732111       44555554443322 


Q ss_pred             CC-cccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809         233 DP-NVDVATLSKQLIGYSGSDIRDLCQEIIL  262 (343)
Q Consensus       233 ~~-~~~~~~la~~t~g~s~~di~~l~~~A~~  262 (343)
                      .+ +..+..++..+.| +.+++.++++.+..
T Consensus       213 ~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~  242 (354)
T 1sxj_E          213 LETKDILKRIAQASNG-NLRVSLLMLESMAL  242 (354)
T ss_dssp             ECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred             CCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            13 4557889988877 56666666665543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.61  E-value=3.3e-15  Score=152.63  Aligned_cols=199  Identities=18%  Similarity=0.231  Sum_probs=134.8

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE  132 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~  132 (343)
                      ++++|++.+++.+...+.......   .....+..++||+||||||||++|+++|..+   +.+++.++|+++...+...
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~  567 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS  567 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred             CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence            468999999999888776432100   0001233479999999999999999999997   6789999999988776544


Q ss_pred             hHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC------CCCCCEEEEEecCCCCC--
Q psy7809         133 SEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG------SGDKGVLVLAATNHPWD--  204 (343)
Q Consensus       133 ~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~v~vI~ttn~~~~--  204 (343)
                          ...+........++||||||||.+         ...+++.|++.++.-.-.      ....+++||+|||.+..  
T Consensus       568 ----~~~l~~~~~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~  634 (758)
T 3pxi_A          568 ----GGQLTEKVRRKPYSVVLLDAIEKA---------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK  634 (758)
T ss_dssp             -------CHHHHHHCSSSEEEEECGGGS---------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred             ----cchhhHHHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence                112233344456689999999887         346777788877742110      01336789999997654  


Q ss_pred             ----------CCHHHhccccCcch--------HHHHHhhhhcCC-------CC---CCcccHHHHHHHc--cCCCHHHHH
Q psy7809         205 ----------LDEALKRRFEKRIS--------PIQIIGLCLGEI-------RK---DPNVDVATLSKQL--IGYSGSDIR  254 (343)
Q Consensus       205 ----------l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~~---~~~~~~~~la~~t--~g~s~~di~  254 (343)
                                +.+.+++||+..+.        +..|++.++...       ..   .++..++.|+...  ..+..++|+
T Consensus       635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~  714 (758)
T 3pxi_A          635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR  714 (758)
T ss_dssp             HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred             HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence                      78899999976554        555555555432       11   1233455666542  345678999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy7809         255 DLCQEIILIAAREVIQ  270 (343)
Q Consensus       255 ~l~~~A~~~a~~r~~~  270 (343)
                      +++++++..++.+..-
T Consensus       715 ~~i~~~v~~~l~~~~l  730 (758)
T 3pxi_A          715 RAIQKHVEDRLSEELL  730 (758)
T ss_dssp             HHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988877664

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.56  E-value=1.1e-14  Score=148.94  Aligned_cols=197  Identities=17%  Similarity=0.212  Sum_probs=132.6

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhcc---CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc----
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGI---LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK----  128 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~----  128 (343)
                      ++++|++++++.+...+....      .++   ..+..++||+||||||||++|+++|..++.+++.++|+++...    
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~  531 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMAR------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS  531 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHH------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred             hhccCHHHHHHHHHHHHHHHh------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHh
Confidence            358899999988887664321      111   1344579999999999999999999999999999999887543    


Q ss_pred             --------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC--C----CCCCEE
Q psy7809         129 --------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG--S----GDKGVL  194 (343)
Q Consensus       129 --------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~--~----~~~~v~  194 (343)
                              |+|...  ...+........++||||||+|.+         ...+++.|++.|+.-.-.  .    ...+++
T Consensus       532 ~l~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~  600 (758)
T 1r6b_X          532 RLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA---------HPDVFNILLQVMDNGTLTDNNGRKADFRNVV  600 (758)
T ss_dssp             SSCCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred             hhcCCCCCCcCccc--cchHHHHHHhCCCcEEEEeCcccc---------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence                    222111  112233344455689999999987         345777888877732110  0    013688


Q ss_pred             EEEecCCCC-------------------------CCCHHHhccccCcch--------HHHHHhhhhcCC---------C-
Q psy7809         195 VLAATNHPW-------------------------DLDEALKRRFEKRIS--------PIQIIGLCLGEI---------R-  231 (343)
Q Consensus       195 vI~ttn~~~-------------------------~l~~~l~~rf~~~i~--------r~~il~~~~~~~---------~-  231 (343)
                      ||+|||...                         .+++.+++||+..+.        +..|++.++...         . 
T Consensus       601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~  680 (758)
T 1r6b_X          601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL  680 (758)
T ss_dssp             EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence            999999754                         467888999976665        556666655421         0 


Q ss_pred             CCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         232 KDPNVDVATLSKQL--IGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       232 ~~~~~~~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      ..++..++.|+...  .++..++|..++++++..++.+..
T Consensus       681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~  720 (758)
T 1r6b_X          681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL  720 (758)
T ss_dssp             EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred             EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence            11333456677654  355689999999999988776654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.54  E-value=1.2e-13  Score=127.80  Aligned_cols=171  Identities=19%  Similarity=0.169  Sum_probs=112.2

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~  119 (343)
                      .+.+++.+..|++++|++.+++.|...+...           .. .+++|+||||||||++++++|+.+..     .+..
T Consensus        14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   81 (340)
T 1sxj_C           14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE   81 (340)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred             chHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence            5667888999999999999999998877531           22 24999999999999999999998743     3666


Q ss_pred             EcCCccccccccchHHHHHHHHHHHHH------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETARA------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV  193 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v  193 (343)
                      +++.+..+      ...++..+.....      ..+.|++|||+|.+..         ...+.|+..++..     ....
T Consensus        82 ~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------~~~~~L~~~le~~-----~~~~  141 (340)
T 1sxj_C           82 LNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------AAQNALRRVIERY-----TKNT  141 (340)
T ss_dssp             ECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------HHHHHHHHHHHHT-----TTTE
T ss_pred             EcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------HHHHHHHHHHhcC-----CCCe
Confidence            66654221      1223333322221      1357999999998832         3455677777654     2356


Q ss_pred             EEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccC
Q psy7809         194 LVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIG  247 (343)
Q Consensus       194 ~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g  247 (343)
                      .+|+++|.+..+.+++++|+...-.       ...++...+..... .++..+..++..+.|
T Consensus       142 ~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G  203 (340)
T 1sxj_C          142 RFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG  203 (340)
T ss_dssp             EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred             EEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            7888899999999999998752211       23334433322211 233345667776655

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.52  E-value=2.6e-15  Score=148.73  Aligned_cols=149  Identities=21%  Similarity=0.229  Sum_probs=89.4

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE----cCCcccccccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV----LPSSLTSKHYG  131 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v----~~~~l~~~~~~  131 (343)
                      ..++|++.+++.+...+..... ............++||+||||||||++|+++|+.++..++..    ++.++......
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~-~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~  373 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVP-KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR  373 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCC-EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred             chhcChHHHHHHHHHHHhCCCc-ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence            4689999998887543332100 000001123344899999999999999999999987665542    22333222111


Q ss_pred             chH----HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC--------CCCCCCEEEEEec
Q psy7809         132 ESE----KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT--------GSGDKGVLVLAAT  199 (343)
Q Consensus       132 ~~~----~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~~~v~vI~tt  199 (343)
                      ...    ......+..+   ..+|+||||||.+..         .....|+..|+.-.-        ...+.++.||+||
T Consensus       374 ~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~---------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaat  441 (595)
T 3f9v_A          374 EKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD---------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAG  441 (595)
T ss_dssp             GGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS---------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEE
T ss_pred             ccccccccccCCeeEec---CCCcEEeehhhhCCH---------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEc
Confidence            100    0000112222   347999999998832         345566666653211        0113468899999


Q ss_pred             CCCC-------------CCCHHHhccccCcc
Q psy7809         200 NHPW-------------DLDEALKRRFEKRI  217 (343)
Q Consensus       200 n~~~-------------~l~~~l~~rf~~~i  217 (343)
                      |.++             .+++++++||+..+
T Consensus       442 Np~~G~~~~~~~~~~ni~l~~aLl~RFDl~~  472 (595)
T 3f9v_A          442 NPKFGRYISERPVSDNINLPPTILSRFDLIF  472 (595)
T ss_dssp             CCTTCCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred             CCcCCccCcccCchhccCCCHHHHhhCeEEE
Confidence            9886             89999999997544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.51  E-value=7.8e-14  Score=144.15  Aligned_cols=201  Identities=21%  Similarity=0.272  Sum_probs=133.0

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc---
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH---  129 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~---  129 (343)
                      ++|+|++.+++.+...+......  + .....+..++||+||||||||++|++++..+   +.+++.++|+++....   
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g--~-~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s  634 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAG--L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS  634 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGG--C-SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred             cccCCcHHHHHHHHHHHHHHhcc--c-CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHH
Confidence            56899999999998877532100  0 0001233589999999999999999999998   7899999998776431   


Q ss_pred             ---------ccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC------CCCCEE
Q psy7809         130 ---------YGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS------GDKGVL  194 (343)
Q Consensus       130 ---------~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~  194 (343)
                               +|...  ...+........++||||||+|.+         ...+++.|+..++.-.-..      .-.+++
T Consensus       635 ~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i  703 (854)
T 1qvr_A          635 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA---------HPDVFNILLQILDDGRLTDSHGRTVDFRNTV  703 (854)
T ss_dssp             GC----------------CHHHHHHHCSSEEEEESSGGGS---------CHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred             HHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc---------CHHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence                     11111  122333344455689999999887         3467788888887421100      023688


Q ss_pred             EEEecCCC--------------------------CCCCHHHhccccCcch--------HHHHHhhhhcCC-------C--
Q psy7809         195 VLAATNHP--------------------------WDLDEALKRRFEKRIS--------PIQIIGLCLGEI-------R--  231 (343)
Q Consensus       195 vI~ttn~~--------------------------~~l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~--  231 (343)
                      ||+|||..                          ..+.+.+++||+..+.        ...|++.++...       .  
T Consensus       704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~  783 (854)
T 1qvr_A          704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRIS  783 (854)
T ss_dssp             EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCce
Confidence            99999972                          2456778888866554        445555555421       1  


Q ss_pred             -CCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         232 -KDPNVDVATLSKQLI--GYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       232 -~~~~~~~~~la~~t~--g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                       ..++..++.|+...-  .+..++|++++++++..++.+...
T Consensus       784 ~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~  825 (854)
T 1qvr_A          784 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL  825 (854)
T ss_dssp             EEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred             EEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence             123344667777665  568899999999999998887664

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.51  E-value=2.9e-14  Score=137.89  Aligned_cols=186  Identities=16%  Similarity=0.122  Sum_probs=107.2

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCC-----ccccc
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPS-----SLTSK  128 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~-----~l~~~  128 (343)
                      ..++|++++++.+...+.              ...++||+||||||||++|+++|..++.  +|..+.+.     ++.+.
T Consensus        22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~   87 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP   87 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred             hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence            358899999988876653              2358999999999999999999998853  55555543     22221


Q ss_pred             cccchHHHHHHHHHHHH-Hc--CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC------CCCCCCCEEEEEec
Q psy7809         129 HYGESEKLVRALFETAR-AR--APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG------TGSGDKGVLVLAAT  199 (343)
Q Consensus       129 ~~~~~~~~i~~~~~~a~-~~--~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~------~~~~~~~v~vI~tt  199 (343)
                      ..+..... ...|..+. ..  .++|||||||+.+         .....+.|+..|+...      ....+.+ ++|++|
T Consensus        88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~---------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~AT  156 (500)
T 3nbx_X           88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAAS  156 (500)
T ss_dssp             BC-----------CBCCTTSGGGCSEEEEESGGGC---------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEE
T ss_pred             ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh---------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhcc
Confidence            11111000 11121111 11  3579999999876         3356667777765211      0011223 456677


Q ss_pred             CCCCC---CCHHHhccccCcch---------HHHHHhhhhcCC-------------------------CCCCcccHHHHH
Q psy7809         200 NHPWD---LDEALKRRFEKRIS---------PIQIIGLCLGEI-------------------------RKDPNVDVATLS  242 (343)
Q Consensus       200 n~~~~---l~~~l~~rf~~~i~---------r~~il~~~~~~~-------------------------~~~~~~~~~~la  242 (343)
                      |.+..   ..+++++||...+.         +..|++......                         .+ ++.-++.++
T Consensus       157 N~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v-~d~v~e~i~  235 (500)
T 3nbx_X          157 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITL-PDHVFELIF  235 (500)
T ss_dssp             SSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBC-CHHHHHHHH
T ss_pred             ccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccC-chHHHHHHH
Confidence            75322   44699999866554         345665543211                         11 112234444


Q ss_pred             HHc---------cCCCHHHHHHHHHHHHHHHHHH
Q psy7809         243 KQL---------IGYSGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       243 ~~t---------~g~s~~di~~l~~~A~~~a~~r  267 (343)
                      ...         .|.|++.+..+++.|...|..+
T Consensus       236 ~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~  269 (500)
T 3nbx_X          236 MLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS  269 (500)
T ss_dssp             HHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence            443         4778888888888777776654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.51  E-value=2.5e-13  Score=121.23  Aligned_cols=141  Identities=20%  Similarity=0.180  Sum_probs=85.1

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCcccccc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLTSKH  129 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~~~~  129 (343)
                      .+|++++|.+...+.+.+.+....          ..+.++||+||||||||++|++++..+.   .+++.++|..+....
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~   72 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL   72 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred             cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence            468899999888888776664321          3446899999999999999999999875   689999998764211


Q ss_pred             c-----cchHHHH-------HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCC
Q psy7809         130 Y-----GESEKLV-------RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDK  191 (343)
Q Consensus       130 ~-----~~~~~~i-------~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~  191 (343)
                      .     |......       ...+..   ...++|||||+|.+..         .....|+..++...     .. ....
T Consensus        73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~---------~~q~~Ll~~l~~~~~~~~g~~~~~~~  140 (265)
T 2bjv_A           73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM---------MVQEKLLRVIEYGELERVGGSQPLQV  140 (265)
T ss_dssp             HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH---------HHHHHHHHHHHHCEECCCCC--CEEC
T ss_pred             HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH---------HHHHHHHHHHHhCCeecCCCcccccC
Confidence            0     1000000       011221   2357999999998832         34455555554311     00 0023


Q ss_pred             CEEEEEecCCC-------CCCCHHHhccccC
Q psy7809         192 GVLVLAATNHP-------WDLDEALKRRFEK  215 (343)
Q Consensus       192 ~v~vI~ttn~~-------~~l~~~l~~rf~~  215 (343)
                      ++.+|+|||.+       ..+.+.+.+||..
T Consensus       141 ~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~  171 (265)
T 2bjv_A          141 NVRLVCATNADLPAMVNEGTFRADLLDALAF  171 (265)
T ss_dssp             CCEEEEEESSCHHHHHHHTSSCHHHHHHHCS
T ss_pred             CeEEEEecCcCHHHHHHcCCccHHHHHhhcC
Confidence            57889999874       2467888888853

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.49  E-value=4.2e-14  Score=114.72  Aligned_cols=112  Identities=12%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccch
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGES  133 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~  133 (343)
                      +++|.....+.+.+.+....          ....++||+||||||||++|++++...   +.+|+ ++|..+...     
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----   65 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----   65 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred             CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence            57888888887777664321          345689999999999999999999886   67888 999876654     


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         134 EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       134 ~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                       ......+..+   ..++|||||+|.+.         ......|+..+...     ..++.+|++||.+
T Consensus        66 -~~~~~~~~~a---~~g~l~ldei~~l~---------~~~q~~Ll~~l~~~-----~~~~~~I~~t~~~  116 (145)
T 3n70_A           66 -PQLNDFIALA---QGGTLVLSHPEHLT---------REQQYHLVQLQSQE-----HRPFRLIGIGDTS  116 (145)
T ss_dssp             -SCHHHHHHHH---TTSCEEEECGGGSC---------HHHHHHHHHHHHSS-----SCSSCEEEEESSC
T ss_pred             -hhhhcHHHHc---CCcEEEEcChHHCC---------HHHHHHHHHHHhhc-----CCCEEEEEECCcC
Confidence             1233444444   34799999999883         23445566666332     2256788888864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.47  E-value=1.6e-13  Score=136.63  Aligned_cols=54  Identities=28%  Similarity=0.400  Sum_probs=46.2

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .+.++..|++++|++.+++.+...+.              ...+++|+||||||||++|++++..+..
T Consensus        33 ~~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           33 IEVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             SCCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ccccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            45677889999999999998887774              3358999999999999999999998753

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.45  E-value=3e-13  Score=123.27  Aligned_cols=186  Identities=17%  Similarity=0.226  Sum_probs=109.8

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc--
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY--  130 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~--  130 (343)
                      ++++|.....+.+.+.+....          ....++||+||||||||++|++++..+   +.+|+.++|..+.....  
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~   71 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES   71 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence            357888888888777665321          345689999999999999999999865   57899999987643110  


Q ss_pred             ---cc----h---HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC-----CC-CCCCCEE
Q psy7809         131 ---GE----S---EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG-----TG-SGDKGVL  194 (343)
Q Consensus       131 ---~~----~---~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-~~~~~v~  194 (343)
                         |.    .   .......|..+   ..++|||||+|.+..         .....|+..++...     .. .....+.
T Consensus        72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~---------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r  139 (304)
T 1ojl_A           72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP---------LMQVRLLRAIQEREVQRVGSNQTISVDVR  139 (304)
T ss_dssp             HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH---------HHHHHHHHHHHSSBCCBTTBCCCCBCCCE
T ss_pred             HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH---------HHHHHHHHHHhcCEeeecCCcccccCCeE
Confidence               00    0   00011223333   247999999998832         34556666665322     00 0123578


Q ss_pred             EEEecCCC-------CCCCHHHhccccCc-ch------HHH----HHhhhhcCC----C----CCCcccHHHHHHHc-cC
Q psy7809         195 VLAATNHP-------WDLDEALKRRFEKR-IS------PIQ----IIGLCLGEI----R----KDPNVDVATLSKQL-IG  247 (343)
Q Consensus       195 vI~ttn~~-------~~l~~~l~~rf~~~-i~------r~~----il~~~~~~~----~----~~~~~~~~~la~~t-~g  247 (343)
                      ||++||.+       ..+.+.+.+||... +.      |.+    +++.++...    .    ..++..+..|.... .|
T Consensus       140 iI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpG  219 (304)
T 1ojl_A          140 LIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPG  219 (304)
T ss_dssp             EEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSS
T ss_pred             EEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCC
Confidence            99999875       23556777776422 21      222    333333221    1    11223344555554 33


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy7809         248 YSGSDIRDLCQEIILIA  264 (343)
Q Consensus       248 ~s~~di~~l~~~A~~~a  264 (343)
                       +.++|.+++++|+..+
T Consensus       220 -nvReL~~~l~~~~~~~  235 (304)
T 1ojl_A          220 -NIRELENAIERAVVLL  235 (304)
T ss_dssp             -HHHHHHHHHHHHHHHC
T ss_pred             -CHHHHHHHHHHHHHhC
Confidence             5677777877776543

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.44  E-value=9.2e-13  Score=121.68  Aligned_cols=171  Identities=15%  Similarity=0.139  Sum_probs=109.5

Q ss_pred             cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc----------------------
Q psy7809          59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST----------------------  116 (343)
Q Consensus        59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~----------------------  116 (343)
                      ..+++..+.+...+...           ..+..+||+||+|+|||++|+++|+.+.+.                      
T Consensus         5 pw~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~   73 (334)
T 1a5t_A            5 PWLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH   73 (334)
T ss_dssp             GGGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred             CchHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence            34566677777666432           455679999999999999999999988643                      


Q ss_pred             --eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCC
Q psy7809         117 --FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGD  190 (343)
Q Consensus       117 --~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~  190 (343)
                        ++.+.+.+-   ........++.++..+..    ..+.|++|||+|.+.         ....+.|++.++..     +
T Consensus        74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~---------~~a~naLLk~lEep-----~  136 (334)
T 1a5t_A           74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT---------DAAANALLKTLEEP-----P  136 (334)
T ss_dssp             TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC---------HHHHHHHHHHHTSC-----C
T ss_pred             CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC---------HHHHHHHHHHhcCC-----C
Confidence              233332210   011123446666665542    235799999999983         24567888888753     4


Q ss_pred             CCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809         191 KGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQE  259 (343)
Q Consensus       191 ~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~  259 (343)
                      .++++|++|+.++.+.+++++|+...-.    ..++..+..... ..++..+..++..+.| +.+.+.++++.
T Consensus       137 ~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~l~~~s~G-~~r~a~~~l~~  207 (334)
T 1a5t_A          137 AETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-TMSQDALLAALRLSAG-SPGAALALFQG  207 (334)
T ss_dssp             TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred             CCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence            4788899999999999999998653222    333333322222 2344556788888877 56665555443

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.43  E-value=4.7e-14  Score=114.15  Aligned_cols=112  Identities=12%  Similarity=0.151  Sum_probs=77.2

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHH
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKL  136 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~  136 (343)
                      +++|.+..++.+.+.+....          ....+++|+||||||||++|++++.... +++.++|..+....       
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------   66 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------   66 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred             CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence            57888888888887765321          3456899999999999999999998888 99999998765432       


Q ss_pred             HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         137 VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       137 i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      ...++..+   ..++|||||+|.+..         .....|+..++...    ..++.+|++||.+
T Consensus        67 ~~~~~~~a---~~~~l~lDei~~l~~---------~~q~~Ll~~l~~~~----~~~~~iI~~tn~~  116 (143)
T 3co5_A           67 PMELLQKA---EGGVLYVGDIAQYSR---------NIQTGITFIIGKAE----RCRVRVIASCSYA  116 (143)
T ss_dssp             HHHHHHHT---TTSEEEEEECTTCCH---------HHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred             hhhHHHhC---CCCeEEEeChHHCCH---------HHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence            34445444   347999999998832         33445555555332    2256788888754

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=99.43  E-value=2.1e-13  Score=100.59  Aligned_cols=82  Identities=16%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809         219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ  298 (343)
Q Consensus       219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (343)
                      |.+||+.+++...+..++|++.||+.|+||||+||.++|++|.+.|+++...                            
T Consensus         6 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~----------------------------   57 (88)
T 3vlf_B            6 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK----------------------------   57 (88)
T ss_dssp             HHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS----------------------------
T ss_pred             HHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc----------------------------
Confidence            8999999999998889999999999999999999999999999999987321                            


Q ss_pred             cCCCCCCcccccHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q psy7809         299 VAPLGSDRIVLNRSHFERAKEKCRKSVD-GALIRKYKRWN  337 (343)
Q Consensus       299 ~~~~~~~~~~lt~~df~~Al~~~~p~~~-~~~~~~~~~~~  337 (343)
                        +       |+.+||..|++++.++.. .+....|..|+
T Consensus        58 --~-------i~~~df~~Al~~v~~~~~~~~~~~~y~~w~   88 (88)
T 3vlf_B           58 --V-------ATEKDFLKAVDKVISGYKKFSSTSRYMQYN   88 (88)
T ss_dssp             --S-------BCHHHHHHHHHHHTC---------------
T ss_pred             --c-------CCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence              2       999999999999998874 45688888885

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=99.36  E-value=2.2e-13  Score=99.52  Aligned_cols=78  Identities=24%  Similarity=0.259  Sum_probs=61.7

Q ss_pred             HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809         219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ  298 (343)
Q Consensus       219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (343)
                      |.+||+.+++......++|++.||..|+||||+||.++|+.|...|+++..                             
T Consensus         6 R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------------------   56 (83)
T 3aji_B            6 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR-----------------------------   56 (83)
T ss_dssp             HHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-----------------------------
T ss_pred             HHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------------------
Confidence            889999999998878899999999999999999999999999999886531                             


Q ss_pred             cCCCCCCcccccHHHHHHHHHhcCCCCCHHHHHHHH
Q psy7809         299 VAPLGSDRIVLNRSHFERAKEKCRKSVDGALIRKYK  334 (343)
Q Consensus       299 ~~~~~~~~~~lt~~df~~Al~~~~p~~~~~~~~~~~  334 (343)
                       .+       |+.+||..|++.++|+++ ++++.|+
T Consensus        57 -~~-------i~~~df~~Al~~~~ps~~-~~l~~y~   83 (83)
T 3aji_B           57 -YI-------VLAKDFEKAYKTVIKKDE-QEHEFYK   83 (83)
T ss_dssp             -SS-------BCHHHHHHHHHHHCC-----------
T ss_pred             -CC-------cCHHHHHHHHHHHccCch-HHHHhcC
Confidence             13       999999999999999998 7887774

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.30  E-value=1.8e-11  Score=111.32  Aligned_cols=122  Identities=11%  Similarity=0.112  Sum_probs=87.7

Q ss_pred             ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh------CCceEEEcCCccccccccch
Q psy7809          60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH------GSTFFNVLPSSLTSKHYGES  133 (343)
Q Consensus        60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l------~~~~~~v~~~~l~~~~~~~~  133 (343)
                      |++++.+.|...+...           . ..++|||||||+|||++|+++|+.+      ...++.+++.+-     ...
T Consensus         1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~   63 (305)
T 2gno_A            1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG   63 (305)
T ss_dssp             ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred             ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence            6677788888777542           2 4689999999999999999999864      346677765420     122


Q ss_pred             HHHHHHHHHHHHHc----CCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHH
Q psy7809         134 EKLVRALFETARAR----APAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL  209 (343)
Q Consensus       134 ~~~i~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l  209 (343)
                      ...++.++..+...    ...|+||||+|.+.         ....+.|++.|+..     +.++++|++|+.++.+.+++
T Consensus        64 id~ir~li~~~~~~p~~~~~kvviIdead~lt---------~~a~naLLk~LEep-----~~~t~fIl~t~~~~kl~~tI  129 (305)
T 2gno_A           64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT---------QQAANAFLKALEEP-----PEYAVIVLNTRRWHYLLPTI  129 (305)
T ss_dssp             HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC---------HHHHHHTHHHHHSC-----CTTEEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHhhccccCCceEEEeccHHHhC---------HHHHHHHHHHHhCC-----CCCeEEEEEECChHhChHHH
Confidence            33466677666432    23699999999983         34577899999854     44778888889999999999


Q ss_pred             hcc
Q psy7809         210 KRR  212 (343)
Q Consensus       210 ~~r  212 (343)
                      ++|
T Consensus       130 ~SR  132 (305)
T 2gno_A          130 KSR  132 (305)
T ss_dssp             HTT
T ss_pred             Hce
Confidence            999

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.29  E-value=2.4e-11  Score=114.86  Aligned_cols=202  Identities=13%  Similarity=0.040  Sum_probs=117.8

Q ss_pred             CCCcccccHHHHHHHHHHH-hccccChHHHhccCCCCceEEE--EcCCCchHHHHHHHHHHHh---------CCceEEEc
Q psy7809          54 GWDDIAGLDNVKQIFKETL-LLPKLMPQLFKGILRPWRGILL--FGPPGTGKTLLAKAVASQH---------GSTFFNVL  121 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~vll--~Gp~GtGKT~la~~ia~~l---------~~~~~~v~  121 (343)
                      ..++++|.+...+.|...+ .....      +....+..++|  +||+|+|||++++.+++.+         +..+++++
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLS------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHT------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhc------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            3468999999888888776 42110      00023467899  9999999999999999876         45677787


Q ss_pred             CCccccc-------------c---ccc-hHHHHHHHHHHHH-HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc
Q psy7809         122 PSSLTSK-------------H---YGE-SEKLVRALFETAR-ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG  183 (343)
Q Consensus       122 ~~~l~~~-------------~---~~~-~~~~i~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~  183 (343)
                      |......             .   .+. ....+..+..... ...|.||+|||+|.+.....   .....+..++..+..
T Consensus        94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~---~~~~~l~~l~~~~~~  170 (412)
T 1w5s_A           94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR---IAAEDLYTLLRVHEE  170 (412)
T ss_dssp             GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT---SCHHHHHHHHTHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC---cchHHHHHHHHHHHh
Confidence            6432110             0   011 1122233333222 24578999999999854211   012344455555543


Q ss_pred             CCCCCCCCCEEEEEecCCCC---CCC---HHHhccccCcch--------HHHHHhhhhcCC---CCCCcccHHHHHHHcc
Q psy7809         184 VGTGSGDKGVLVLAATNHPW---DLD---EALKRRFEKRIS--------PIQIIGLCLGEI---RKDPNVDVATLSKQLI  246 (343)
Q Consensus       184 ~~~~~~~~~v~vI~ttn~~~---~l~---~~l~~rf~~~i~--------r~~il~~~~~~~---~~~~~~~~~~la~~t~  246 (343)
                      ........++.+|++++.++   .++   +.+.++|..++.        ..+++...+...   ....+..+..++..+.
T Consensus       171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~  250 (412)
T 1w5s_A          171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG  250 (412)
T ss_dssp             SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred             cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence            32000013788888887665   233   555566544443        444554433311   1223445778889998


Q ss_pred             ------CCCHHHHHHHHHHHHHHHH
Q psy7809         247 ------GYSGSDIRDLCQEIILIAA  265 (343)
Q Consensus       247 ------g~s~~di~~l~~~A~~~a~  265 (343)
                            | .++.+..++..|...+.
T Consensus       251 ~~~~~~G-~p~~~~~l~~~a~~~a~  274 (412)
T 1w5s_A          251 EDKGGDG-SARRAIVALKMACEMAE  274 (412)
T ss_dssp             GGGTSCC-CHHHHHHHHHHHHHHHH
T ss_pred             HhccCCC-cHHHHHHHHHHHHHHHH
Confidence                  7 58888888888776654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.27  E-value=7.6e-12  Score=104.89  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             cCCCCCCCcccc----cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEE
Q psy7809          49 TDTGVGWDDIAG----LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNV  120 (343)
Q Consensus        49 ~~~~~~~~~l~G----~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v  120 (343)
                      ++...+|+++++    +..+.+.+.+++....         ...+.+++|+||+|||||+++++++..+    +..++++
T Consensus         3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~   73 (180)
T 3ec2_A            3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF   73 (180)
T ss_dssp             SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            455678988875    4455555665554321         1345789999999999999999999877    5566666


Q ss_pred             cCCccccccccchHHH-HHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         121 LPSSLTSKHYGESEKL-VRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~~-i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ++.++........... ...++.  ....|.+|+|||++....    .......+..++.....       .+..+|.||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~~~----~~~~~~~l~~ll~~~~~-------~~~~ii~ts  140 (180)
T 3ec2_A           74 DTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSERL----SDWQRELISYIITYRYN-------NLKSTIITT  140 (180)
T ss_dssp             EHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSSCC----CHHHHHHHHHHHHHHHH-------TTCEEEEEC
T ss_pred             EHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCCcC----CHHHHHHHHHHHHHHHH-------cCCCEEEEc
Confidence            6555443211100000 001111  123578999999985421    12223333344433311       134566677


Q ss_pred             CCC-CCCC-------HHHhccccCcc
Q psy7809         200 NHP-WDLD-------EALKRRFEKRI  217 (343)
Q Consensus       200 n~~-~~l~-------~~l~~rf~~~i  217 (343)
                      |.+ +.+.       +.+.+|+...+
T Consensus       141 n~~~~~~~~~~~~~~~~l~~~~~~~i  166 (180)
T 3ec2_A          141 NYSLQREEESSVRISADLASRLGENV  166 (180)
T ss_dssp             CCCSCC---CHHHHHHHHHHHHCHHH
T ss_pred             CCChhHhhhhccchhhHHHHHHHHHH
Confidence            765 4432       35555655544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.25  E-value=8.6e-12  Score=134.35  Aligned_cols=148  Identities=20%  Similarity=0.168  Sum_probs=101.2

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHhccccC----------hHHHhc-------------------cCCCCceEEEEcCCCc
Q psy7809          50 DTGVGWDDIAGLDNVKQIFKETLLLPKLM----------PQLFKG-------------------ILRPWRGILLFGPPGT  100 (343)
Q Consensus        50 ~~~~~~~~l~G~~~~k~~l~~~~~~~~~~----------~~~~~~-------------------~~~~~~~vll~Gp~Gt  100 (343)
                      .+..+|+++.|+++.|+.+.+.+.+++..          +..+..                   +.+.++.+++||||||
T Consensus      1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A         1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred             cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence            34488999999999999999988887622          222222                   1233345999999999


Q ss_pred             hHHHHHHHHHHHh---CCceEEEcCCccc------------cccccc----hHHHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809         101 GKTLLAKAVASQH---GSTFFNVLPSSLT------------SKHYGE----SEKLVRALFETARARAPAVIFIDEVDAFC  161 (343)
Q Consensus       101 GKT~la~~ia~~l---~~~~~~v~~~~l~------------~~~~~~----~~~~i~~~~~~a~~~~p~il~iDeid~l~  161 (343)
                      |||++|++++.+.   +.+.++++..+..            .+++++    .++.++.+|..|+...|+++++|++|.|+
T Consensus      1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A         1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp             SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred             ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence            9999999999766   5566666666544            445555    78889999999999999999999999998


Q ss_pred             CCC------C--chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         162 SGS------R--EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       162 ~~~------~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      +..      .  +.....+++++++..+++.....   +|+|| +||+
T Consensus      1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~---~v~v~-~~n~ 1217 (1706)
T 3cmw_A         1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS---NTLLI-FINQ 1217 (1706)
T ss_dssp             CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT---TCEEE-EEEC
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHhhhccC---CeEEE-Eecc
Confidence            741      1  12455678889999988754433   77777 4454

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=99.20  E-value=1.8e-12  Score=94.27  Aligned_cols=79  Identities=23%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809         219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ  298 (343)
Q Consensus       219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (343)
                      |.+||+.+++...+..++|++.||..|+||||+||.++|+.|...|+++...                            
T Consensus         3 R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~----------------------------   54 (82)
T 2dzn_B            3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY----------------------------   54 (82)
T ss_dssp             -----------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCS----------------------------
T ss_pred             HHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC----------------------------
Confidence            7789999999887778999999999999999999999999999999977321                            


Q ss_pred             cCCCCCCcccccHHHHHHHHHhc-CCCCCHHHHHHHH
Q psy7809         299 VAPLGSDRIVLNRSHFERAKEKC-RKSVDGALIRKYK  334 (343)
Q Consensus       299 ~~~~~~~~~~lt~~df~~Al~~~-~p~~~~~~~~~~~  334 (343)
                        +       |+.+||..|++.+ .|+.+.++++.|+
T Consensus        55 --~-------i~~~df~~Al~~v~~~~~~~~~~~~y~   82 (82)
T 2dzn_B           55 --V-------ILQSDLEEAYATQVKTDNTVDKFDFYK   82 (82)
T ss_dssp             --E-------ECHHHHHHHHHTTCC------------
T ss_pred             --C-------cCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence              2       9999999999999 4778888887774

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=99.19  E-value=9.8e-12  Score=91.02  Aligned_cols=69  Identities=19%  Similarity=0.363  Sum_probs=62.6

Q ss_pred             HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809         219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ  298 (343)
Q Consensus       219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (343)
                      |.+||+.+++...+..++|++.||+.|+||||+||.++|++|...|+++...                            
T Consensus        16 R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~----------------------------   67 (86)
T 2krk_A           16 RLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV----------------------------   67 (86)
T ss_dssp             HHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCS----------------------------
T ss_pred             HHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence            9999999999998888999999999999999999999999999999977421                            


Q ss_pred             cCCCCCCcccccHHHHHHHHHhcCCC
Q psy7809         299 VAPLGSDRIVLNRSHFERAKEKCRKS  324 (343)
Q Consensus       299 ~~~~~~~~~~lt~~df~~Al~~~~p~  324 (343)
                        +       |+.+||..|++.++|.
T Consensus        68 --~-------I~~~df~~Al~~v~p~   84 (86)
T 2krk_A           68 --H-------VTQEDFEMAVAKVMQK   84 (86)
T ss_dssp             --E-------ECHHHHHHHHHHHHCC
T ss_pred             --C-------CCHHHHHHHHHHHccC
Confidence              2       9999999999998775

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=99.11  E-value=5.1e-11  Score=85.72  Aligned_cols=68  Identities=19%  Similarity=0.368  Sum_probs=61.1

Q ss_pred             HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccc
Q psy7809         219 PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQ  298 (343)
Q Consensus       219 r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (343)
                      |.+||+.+++......++|++.||+.|+||||+||.++|+.|...|+++...                            
T Consensus         8 R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~----------------------------   59 (78)
T 3kw6_A            8 RLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV----------------------------   59 (78)
T ss_dssp             HHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS----------------------------
T ss_pred             HHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC----------------------------
Confidence            8999999999998788999999999999999999999999999999977321                            


Q ss_pred             cCCCCCCcccccHHHHHHHHHhcCC
Q psy7809         299 VAPLGSDRIVLNRSHFERAKEKCRK  323 (343)
Q Consensus       299 ~~~~~~~~~~lt~~df~~Al~~~~p  323 (343)
                        +       |+.+||..|++++..
T Consensus        60 --~-------i~~~d~~~Al~~v~~   75 (78)
T 3kw6_A           60 --H-------VTQEDFEMAVAKVMQ   75 (78)
T ss_dssp             --E-------ECHHHHHHHHHHHHC
T ss_pred             --C-------CCHHHHHHHHHHHHh
Confidence              2       999999999998754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.09  E-value=1.1e-10  Score=94.90  Aligned_cols=102  Identities=22%  Similarity=0.319  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS  164 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~  164 (343)
                      +...++|+||+|+|||+|+++++..+   |..+++++..++...               +....|.+|+|||++.+... 
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-   98 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-   98 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence            34679999999999999999999887   666888887766543               11235789999999886321 


Q ss_pred             CchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCC--HHHhccccC
Q psy7809         165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD--EALKRRFEK  215 (343)
Q Consensus       165 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~--~~l~~rf~~  215 (343)
                           ....+..++..+.   ...  ..++||++...|..+.  +.+.+|+..
T Consensus        99 -----~~~~l~~li~~~~---~~g--~~~iiits~~~p~~l~~~~~L~SRl~~  141 (149)
T 2kjq_A           99 -----EQALLFSIFNRFR---NSG--KGFLLLGSEYTPQQLVIREDLRTRMAY  141 (149)
T ss_dssp             -----HHHHHHHHHHHHH---HHT--CCEEEEEESSCTTTSSCCHHHHHHGGG
T ss_pred             -----HHHHHHHHHHHHH---HcC--CcEEEEECCCCHHHccccHHHHHHHhc
Confidence                 1222223333221   111  1224444443565443  788888754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.02  E-value=6.2e-10  Score=94.81  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=60.4

Q ss_pred             CCCCCCcccccH----HHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          51 TGVGWDDIAGLD----NVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        51 ~~~~~~~l~G~~----~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      ...+|+++++..    .+.+.+..++....        ....+.+++|+||+|||||++|++++..+   +.+++.+++.
T Consensus        20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~   91 (202)
T 2w58_A           20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE--------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP   91 (202)
T ss_dssp             GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC--------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             HcCCHhhccCCChhHHHHHHHHHHHHHHhh--------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence            456899988754    23444444443210        00123789999999999999999999887   5677778776


Q ss_pred             ccccccccchH-HHHHHHHHHHHHcCCcEEEEccccccc
Q psy7809         124 SLTSKHYGESE-KLVRALFETARARAPAVIFIDEVDAFC  161 (343)
Q Consensus       124 ~l~~~~~~~~~-~~i~~~~~~a~~~~p~il~iDeid~l~  161 (343)
                      ++......... ..+..++....  .+.+|+|||++...
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~  128 (202)
T 2w58_A           92 ELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA  128 (202)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred             HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence            55432111000 00122222222  23699999997653

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.95  E-value=1.6e-09  Score=102.51  Aligned_cols=139  Identities=19%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             ccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHH-HHHhCCceEEEcC-C---ccccccccc
Q psy7809          58 IAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV-ASQHGSTFFNVLP-S---SLTSKHYGE  132 (343)
Q Consensus        58 l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~i-a~~l~~~~~~v~~-~---~l~~~~~~~  132 (343)
                      |+|++.+|..|.-.+...-..       .....++||.|+||+ ||++|+++ +..+....+.... +   .+.....+.
T Consensus       215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~  286 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED  286 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred             cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence            899999988888666432111       122348999999999 99999999 6655443322110 0   111100000


Q ss_pred             h-HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCC----CCCCCCCEEEEEecCCCC----
Q psy7809         133 S-EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVG----TGSGDKGVLVLAATNHPW----  203 (343)
Q Consensus       133 ~-~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~~~v~vI~ttn~~~----  203 (343)
                      . ...-...+..|.   ..++|||||+.+         ....+..|++.|+.-.    +..-+.++.||+|+|...    
T Consensus       287 tG~~~~~G~l~LAd---gGvl~lDEIn~~---------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~  354 (506)
T 3f8t_A          287 RGWALRAGAAVLAD---GGILAVDHLEGA---------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPS  354 (506)
T ss_dssp             SSEEEEECHHHHTT---TSEEEEECCTTC---------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CC
T ss_pred             CCcccCCCeeEEcC---CCeeehHhhhhC---------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCC
Confidence            0 000001112221   279999999877         3455666777665311    001134789999999875    


Q ss_pred             -------CCCHHHhccccCc
Q psy7809         204 -------DLDEALKRRFEKR  216 (343)
Q Consensus       204 -------~l~~~l~~rf~~~  216 (343)
                             .|++++++||+-.
T Consensus       355 ~~s~~~~~Lp~alLDRFDLi  374 (506)
T 3f8t_A          355 DPPIARIDLDQDFLSHFDLI  374 (506)
T ss_dssp             SCGGGGCCSCHHHHTTCSEE
T ss_pred             CCCccccCCChHHhhheeeE
Confidence                   7899999999653

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.95  E-value=1.4e-09  Score=98.55  Aligned_cols=116  Identities=21%  Similarity=0.264  Sum_probs=65.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS  164 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~  164 (343)
                      .++..++|+||||||||+||.++|...+..  |+.+...+....+.......+..++.......  +|+||+++.+....
T Consensus       121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~  198 (331)
T 2vhj_A          121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA  198 (331)
T ss_dssp             EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence            445568999999999999999999876544  44442133333333444555666666555543  99999999986532


Q ss_pred             Cc---hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH
Q psy7809         165 RE---HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA  208 (343)
Q Consensus       165 ~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~  208 (343)
                      ..   .....+.+.+++..|.++...   .++.+|+++| +...+++
T Consensus       199 ~~~s~~G~v~~~lrqlL~~L~~~~k~---~gvtVIlttn-p~s~dea  241 (331)
T 2vhj_A          199 GGNTTSGGISRGAFDLLSDIGAMAAS---RGCVVIASLN-PTSNDDK  241 (331)
T ss_dssp             --------CCHHHHHHHHHHHHHHHH---HTCEEEEECC-CSSCSSS
T ss_pred             ccccccchHHHHHHHHHHHHHHHHhh---CCCEEEEEeC-Ccccchh
Confidence            11   000112233333333322111   1567788888 4444443

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.94  E-value=8.8e-09  Score=115.70  Aligned_cols=135  Identities=19%  Similarity=0.223  Sum_probs=81.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHH-HHhCCceEEEcCCccccccccchHHHHHHHHHHHH---------------HcCCcE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVA-SQHGSTFFNVLPSSLTSKHYGESEKLVRALFETAR---------------ARAPAV  151 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia-~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~---------------~~~p~i  151 (343)
                      ..+++||+||||||||++|+.+. ...+..++.++++...+      ...+...+....               ...++|
T Consensus      1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A         1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp             HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence            45799999999999999995554 44466777777765432      123333333221               112369


Q ss_pred             EEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC-----CCCEEEEEecCCCC-----CCCHHHhccccCcch---
Q psy7809         152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG-----DKGVLVLAATNHPW-----DLDEALKRRFEKRIS---  218 (343)
Q Consensus       152 l~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-----~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~---  218 (343)
                      |||||++......-+......++.++++. .++.....     ..++.+|+++|.+.     .++++++|||.....   
T Consensus      1340 lFiDEinmp~~d~yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P 1418 (2695)
T 4akg_A         1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYP 1418 (2695)
T ss_dssp             EEEETTTCSCCCSSSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCC
T ss_pred             EEecccccccccccCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCC
Confidence            99999986443222222333444454432 12211110     12589999999995     799999999833221   


Q ss_pred             ----HHHHHhhhhcC
Q psy7809         219 ----PIQIIGLCLGE  229 (343)
Q Consensus       219 ----r~~il~~~~~~  229 (343)
                          +..|+..++..
T Consensus      1419 ~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1419 SGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             TTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence                77777766644

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.86  E-value=6.6e-08  Score=88.77  Aligned_cols=60  Identities=18%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      ...+...-+.++|.+...+.|.+.+..              ...++|+||+|+|||+|++.++++.+  ++++++.
T Consensus         4 ~~~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~   63 (350)
T 2qen_A            4 DLRPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR   63 (350)
T ss_dssp             CCSCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred             CCCCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence            344555567899999999999887642              15799999999999999999999876  5666553

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.85  E-value=3.1e-09  Score=96.83  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=57.5

Q ss_pred             CCCCCcccccH----HHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCC
Q psy7809          52 GVGWDDIAGLD----NVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPS  123 (343)
Q Consensus        52 ~~~~~~l~G~~----~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~  123 (343)
                      ..+|+++++..    .+.+.+..++....         .....+++|+||||||||+||+++|.++.    .++.++++.
T Consensus       120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~  190 (308)
T 2qgz_A          120 HIHLSDIDVNNASRMEAFSAILDFVEQYP---------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP  190 (308)
T ss_dssp             SCCGGGSCCCSHHHHHHHHHHHHHHHHCS---------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             hCCHhhCcCCChHHHHHHHHHHHHHHhcc---------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence            46899988633    23334444443210         01257899999999999999999998654    677777766


Q ss_pred             ccccccccch-HHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809         124 SLTSKHYGES-EKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus       124 ~l~~~~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                      ++........ ...+..++...  ..+.+|||||++..
T Consensus       191 ~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~  226 (308)
T 2qgz_A          191 SFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE  226 (308)
T ss_dssp             HHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred             HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence            5543211100 00111122222  23469999999765

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.83  E-value=4.4e-09  Score=89.50  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=72.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH--------hC-CceEEEcCCccccccc----------cc-----hHHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ--------HG-STFFNVLPSSLTSKHY----------GE-----SEKLVRALFETAR  145 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~--------l~-~~~~~v~~~~l~~~~~----------~~-----~~~~i~~~~~~a~  145 (343)
                      ...|++|+||+|||++|...+..        .| .+++..++.++.....          ..     ....+..++. ..
T Consensus         6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~   84 (199)
T 2r2a_A            6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-KP   84 (199)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-SG
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-cc
Confidence            46789999999999999886543        34 6677777766543221          00     1112222211 12


Q ss_pred             HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch
Q psy7809         146 ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS  218 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~  218 (343)
                      ....+||+|||++.+.+.........+    ++..++...    ...+-||.+++.+..|+..+++|+...++
T Consensus        85 ~~~~~vliIDEAq~l~~~~~~~~e~~r----ll~~l~~~r----~~~~~iil~tq~~~~l~~~lr~ri~~~~~  149 (199)
T 2r2a_A           85 ENIGSIVIVDEAQDVWPARSAGSKIPE----NVQWLNTHR----HQGIDIFVLTQGPKLLDQNLRTLVRKHYH  149 (199)
T ss_dssp             GGTTCEEEETTGGGTSBCCCTTCCCCH----HHHGGGGTT----TTTCEEEEEESCGGGBCHHHHTTEEEEEE
T ss_pred             ccCceEEEEEChhhhccCccccchhHH----HHHHHHhcC----cCCeEEEEECCCHHHHhHHHHHHhheEEE
Confidence            234689999999999753321111112    333333211    22567788888899999999998877665

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.82  E-value=1.4e-07  Score=86.75  Aligned_cols=61  Identities=16%  Similarity=0.112  Sum_probs=48.8

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      ...+...-+.++|.+...+.|.. +..               ..++|+||+|+|||+|++.++++.+..++++++..
T Consensus         5 ~~~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~   65 (357)
T 2fna_A            5 DTSPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK   65 (357)
T ss_dssp             CSSCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CCCCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence            33455556789999999888887 531               47899999999999999999999877777777654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=98.69  E-value=4.3e-08  Score=92.06  Aligned_cols=125  Identities=20%  Similarity=0.281  Sum_probs=76.0

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCccccccc-
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSLTSKHY-  130 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l~~~~~-  130 (343)
                      +..++|.....+.+.+.+...          .....+++|+|++||||+++|+++.....   .+|+.++|..+..... 
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~  205 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE  205 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred             chhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence            345666655555555444321          13446789999999999999999987764   6899999987643210 


Q ss_pred             ------------cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCCCC-CCCC
Q psy7809         131 ------------GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGTGS-GDKG  192 (343)
Q Consensus       131 ------------~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~~~-~~~~  192 (343)
                                  |... .....|..|.   .++||||||+.+         ...++..|+..++.     ..... ....
T Consensus       206 ~elfg~~~g~~tga~~-~~~g~~~~a~---~gtlfldei~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~  272 (387)
T 1ny5_A          206 AELFGYEKGAFTGAVS-SKEGFFELAD---GGTLFLDEIGEL---------SLEAQAKLLRVIESGKFYRLGGRKEIEVN  272 (387)
T ss_dssp             HHHHCBCTTSSTTCCS-CBCCHHHHTT---TSEEEEESGGGC---------CHHHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred             HHhcCCCCCCCCCccc-ccCCceeeCC---CcEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence                        0000 0112333332   379999999988         33556666666653     11111 0125


Q ss_pred             EEEEEecCCC
Q psy7809         193 VLVLAATNHP  202 (343)
Q Consensus       193 v~vI~ttn~~  202 (343)
                      +.||++||..
T Consensus       273 ~rii~at~~~  282 (387)
T 1ny5_A          273 VRILAATNRN  282 (387)
T ss_dssp             CEEEEEESSC
T ss_pred             EEEEEeCCCC
Confidence            7789999863

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.59  E-value=1.2e-07  Score=80.26  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ..++++||||||||||++|.++|+.+...++
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            3467999999999999999999999865443

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=98.57  E-value=7.7e-07  Score=82.91  Aligned_cols=124  Identities=22%  Similarity=0.309  Sum_probs=75.1

Q ss_pred             CcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc--eEEEcCCcccccccc--
Q psy7809          56 DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST--FFNVLPSSLTSKHYG--  131 (343)
Q Consensus        56 ~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~--~~~v~~~~l~~~~~~--  131 (343)
                      .+++|.......+...+...          ......++++|++||||+.+|+++....+..  |+.++|..+......  
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~  198 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE  198 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred             ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence            35677666555555444321          1334579999999999999999998877543  999999876432110  


Q ss_pred             ---ch-------HHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC-----CCCC-CCCCEEE
Q psy7809         132 ---ES-------EKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV-----GTGS-GDKGVLV  195 (343)
Q Consensus       132 ---~~-------~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~-~~~~v~v  195 (343)
                         ..       ...-...|..+   ..+.||||||+.+         ....+..|+..++.-     .... ....+.+
T Consensus       199 lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ri  266 (368)
T 3dzd_A          199 LFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGEL---------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRV  266 (368)
T ss_dssp             HHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGS---------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEE
T ss_pred             hcCccccccCCcccccCChHhhc---CCCeEEecChhhC---------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEE
Confidence               00       00001123333   2368999999988         345666777766531     1110 0124678


Q ss_pred             EEecCC
Q psy7809         196 LAATNH  201 (343)
Q Consensus       196 I~ttn~  201 (343)
                      |++||.
T Consensus       267 i~at~~  272 (368)
T 3dzd_A          267 ISATNK  272 (368)
T ss_dssp             EEEESS
T ss_pred             EEecCC
Confidence            888885

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.52  E-value=3.6e-07  Score=99.96  Aligned_cols=113  Identities=21%  Similarity=0.239  Sum_probs=75.4

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----------------cccchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----------------HYGESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~a~  145 (343)
                      ++.++.+++|+||||||||+||.+++.+.   |....+++..+....                .....+..+..++..+.
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence            45678899999999999999999997765   456667766543211                12234566777777888


Q ss_pred             HcCCcEEEEcccccccCCC------Cc-hh-hhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         146 ARAPAVIFIDEVDAFCSGS------RE-HE-ATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~~~------~~-~~-~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      ..+|++|+||+++.+.+..      .+ .. ...+++.+++..|.++...   .++++|+|..
T Consensus      1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~---~~v~VI~tNq 1562 (2050)
T 3cmu_A         1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ---SNTLLIFINQ 1562 (2050)
T ss_dssp             HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT---TTCEEEEEEC
T ss_pred             cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh---CCcEEEEEcc
Confidence            8899999999999887621      11 11 1345666666666554332   2566665543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.48  E-value=8.5e-07  Score=99.93  Aligned_cols=128  Identities=20%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHE  168 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~  168 (343)
                      ..+.++.||+|||||.+++.+|+.+|.+++.++|.+-...      ..+..+|..+...+ +++++||++.+-.     +
T Consensus       645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~~~-----e  712 (2695)
T 4akg_A          645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRLDE-----K  712 (2695)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSSCH-----H
T ss_pred             CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhcCh-----H
Confidence            3578999999999999999999999999999999875532      34566676665544 7999999998732     1


Q ss_pred             hhHHH---HHHHhhhccc----CC--C--CCCCCCEEEEEecC----CCCCCCHHHhccccCcch----HHHHHhhhhc
Q psy7809         169 ATRRV---RCELLSHMDG----VG--T--GSGDKGVLVLAATN----HPWDLDEALKRRFEKRIS----PIQIIGLCLG  228 (343)
Q Consensus       169 ~~~~~---~~~ll~~l~~----~~--~--~~~~~~v~vI~ttn----~~~~l~~~l~~rf~~~i~----r~~il~~~~~  228 (343)
                      ....+   +..+...+..    +.  +  ..-.....|++|.|    ....|++++++||.....    ...|.++.+.
T Consensus       713 vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~  791 (2695)
T 4akg_A          713 VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ  791 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH
Confidence            11111   1111121110    00  0  01123567888888    445799999998854332    5555555443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.35  E-value=2.4e-06  Score=71.12  Aligned_cols=26  Identities=38%  Similarity=0.693  Sum_probs=22.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .+.|.||+|+|||||++.++..++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            47899999999999999999987644

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.16  E-value=1.5e-05  Score=90.69  Aligned_cols=130  Identities=21%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEA  169 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~  169 (343)
                      .+..+.||+|||||.+++.+|+.+|.+++.++|.+-...      ..+..+|.-+...+ +..++|||+.+-.     +.
T Consensus       605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~G-aW~cfDEfNrl~~-----~v  672 (3245)
T 3vkg_A          605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQCG-AWGCFDEFNRLEE-----RI  672 (3245)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHHT-CEEEEETTTSSCH-----HH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhcC-cEEEehhhhcCCH-----HH
Confidence            466899999999999999999999999999999775432      34556666555543 7899999988721     11


Q ss_pred             hHH-------HHHHHhhhccc--CC-C--CCCCCCEEEEEecCC----CCCCCHHHhccccCcch----HHHHHhhhhcC
Q psy7809         170 TRR-------VRCELLSHMDG--VG-T--GSGDKGVLVLAATNH----PWDLDEALKRRFEKRIS----PIQIIGLCLGE  229 (343)
Q Consensus       170 ~~~-------~~~~ll~~l~~--~~-~--~~~~~~v~vI~ttn~----~~~l~~~l~~rf~~~i~----r~~il~~~~~~  229 (343)
                      ...       +...+......  +. +  ..-.....|++|.|.    ...|++.++++|...-.    ...|.+..+-.
T Consensus       673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s  752 (3245)
T 3vkg_A          673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYS  752 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHH
Confidence            111       11111111000  10 0  011235778888883    46899999998765332    66666665554


Q ss_pred             CC
Q psy7809         230 IR  231 (343)
Q Consensus       230 ~~  231 (343)
                      ..
T Consensus       753 ~G  754 (3245)
T 3vkg_A          753 QG  754 (3245)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.15  E-value=1e-05  Score=74.72  Aligned_cols=78  Identities=21%  Similarity=0.208  Sum_probs=51.7

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----------------cccchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----------------HYGESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~a~  145 (343)
                      ++.++..++|+||||+|||+|+..++..+   +..+++++.......                ........+..+.....
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~  136 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR  136 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence            34566779999999999999999998764   566777766542210                01112233333333334


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...+.+++||.+..+.+
T Consensus       137 ~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          137 SGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             TSCCSEEEEECTTTCCC
T ss_pred             hcCCCeEEehHhhhhcC
Confidence            46789999999988875

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.13  E-value=2e-06  Score=75.91  Aligned_cols=27  Identities=44%  Similarity=0.554  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .++++||||||||||++|.++|+.+..
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            468999999999999999999997654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.12  E-value=6.3e-06  Score=70.40  Aligned_cols=40  Identities=25%  Similarity=0.226  Sum_probs=32.5

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      ++.++.-++|+||+|+|||++++.++...+..+++++...
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            3466678999999999999999999986677777776544

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.10  E-value=2.1e-05  Score=67.56  Aligned_cols=108  Identities=20%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------c-------------------c
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------K-------------------H  129 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------~-------------------~  129 (343)
                      +.++..++|+||+|+|||++++.++..+   +..+++++......              .                   +
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQW   99 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCcee
Confidence            3556678999999999999999998654   44555443321100              0                   0


Q ss_pred             ---ccchHHHHHHHHHHHHHcCCc--EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         130 ---YGESEKLVRALFETARARAPA--VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       130 ---~~~~~~~i~~~~~~a~~~~p~--il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                         ..........+...+....|.  +|+|||+..+....  ......+...|.......       ++.||.++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d--~~~~~~~~~~l~~~~~~~-------~~~vi~~~h~~  168 (235)
T 2w0m_A          100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK--PAMARKISYYLKRVLNKW-------NFTIYATSQYA  168 (235)
T ss_dssp             BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC--GGGHHHHHHHHHHHHHHT-------TEEEEEEEC--
T ss_pred             eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC--HHHHHHHHHHHHHHHHhC-------CCeEEEEeccC
Confidence               001223334444445556889  99999999875321  122233444443332211       45666666554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.07  E-value=8.6e-06  Score=70.66  Aligned_cols=78  Identities=15%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHH--h-------CCceEEEcCCccccc--------cc-----------------
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQ--H-------GSTFFNVLPSSLTSK--------HY-----------------  130 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~--l-------~~~~~~v~~~~l~~~--------~~-----------------  130 (343)
                      ++.++..++|+||+|+|||++++.++..  +       +...++++..+....        ..                 
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   99 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF   99 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence            3456678999999999999999999985  2       345666665441000        00                 


Q ss_pred             --cchHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809         131 --GESEKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       131 --~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                        ......+..+...+....|.+|+||++..+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~  133 (243)
T 1n0w_A          100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR  133 (243)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred             CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence              00011223344444556789999999998865

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=98.01  E-value=4.6e-05  Score=69.98  Aligned_cols=151  Identities=12%  Similarity=0.020  Sum_probs=83.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CC-ceEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEccccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GS-TFFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDA  159 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~-~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~  159 (343)
                      .++.+|||||+|.||++.++.+++.+   +. +...+...   ..  .    .++.++..+.    .....|++|||+|.
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~--~----~~~~l~~~~~~~plf~~~kvvii~~~~~   87 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN--T----DWNAIFSLCQAMSLFASRQTLLLLLPEN   87 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT--C----CHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC--C----CHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence            45689999999999999999998765   22 21222111   10  1    1333443332    23357999999987


Q ss_pred             -ccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC------CCCCHHHhccccCcch-------HHHHHhh
Q psy7809         160 -FCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP------WDLDEALKRRFEKRIS-------PIQIIGL  225 (343)
Q Consensus       160 -l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~------~~l~~~l~~rf~~~i~-------r~~il~~  225 (343)
                       +.         ....+.|+..++..     +..+++|.+++.+      ..+.+++.+|....-.       ....++.
T Consensus        88 kl~---------~~~~~aLl~~le~p-----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~  153 (343)
T 1jr3_D           88 GPN---------AAINEQLLTLTGLL-----HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA  153 (343)
T ss_dssp             CCC---------TTHHHHHHHHHTTC-----BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred             CCC---------hHHHHHHHHHHhcC-----CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence             62         23455677777644     2244555444443      3456777775421111       3334444


Q ss_pred             hhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy7809         226 CLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQEIIL  262 (343)
Q Consensus       226 ~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~A~~  262 (343)
                      .+..... .++..+..|+..+.| +.+++.+.++....
T Consensus       154 ~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l  190 (343)
T 1jr3_D          154 RAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSL  190 (343)
T ss_dssp             HHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence            4433322 233446677777755 55666555554443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.01  E-value=3.7e-06  Score=78.31  Aligned_cols=112  Identities=19%  Similarity=0.085  Sum_probs=65.7

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC-C
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG-S  164 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-~  164 (343)
                      +.++..++|+||+|+||||++++++..++..++.+...+-      .....+..      .....++++||++.+... .
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~------~~q~~~~l~dd~~~~~~~~r  233 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGV------AIDQFLVVFEDVKGTGGESR  233 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGG------GTTCSCEEETTCCCSTTTTT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHH------hcchhHHHHHHHHHHHHHHh
Confidence            4667789999999999999999999988776555332220      00111111      123467899999988641 1


Q ss_pred             C-chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc--cccCcch
Q psy7809         165 R-EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS  218 (343)
Q Consensus       165 ~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~  218 (343)
                      . ...........+...+++        .+.|++++|+++.+ +.+++  +++..+.
T Consensus       234 ~l~~~~~~~~~~~l~~~ldG--------~v~v~~~tn~~~~l-~alf~pg~ld~~~~  281 (377)
T 1svm_A          234 DLPSGQGINNLDNLRDYLDG--------SVKVNLEKKHLNKR-TQIFPPGIVTMNEY  281 (377)
T ss_dssp             TCCCCSHHHHHHTTHHHHHC--------SSCEEECCSSSCCE-EECCCCEEEEECSC
T ss_pred             hccccCcchHHHHHHHHhcC--------CCeEeeccCchhhH-HHhhcCcccChhHH
Confidence            1 000000012334444433        34578889999888 45555  5554443

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.99  E-value=2.5e-05  Score=72.42  Aligned_cols=78  Identities=24%  Similarity=0.245  Sum_probs=50.6

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc----------------ccchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH----------------YGESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~----------------~~~~~~~i~~~~~~a~  145 (343)
                      ++.++..++|+||||+|||++|..++...   +..+.+++...-....                .......+..+.....
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~  149 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR  149 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence            34566789999999999999999998654   5677777664322110                0111222222222233


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...+++|+||.+..+..
T Consensus       150 ~~~~~lVVIDsl~~l~~  166 (366)
T 1xp8_A          150 SGAIDVVVVDSVAALTP  166 (366)
T ss_dssp             TTCCSEEEEECTTTCCC
T ss_pred             cCCCCEEEEeChHHhcc
Confidence            45688999999999974

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.97  E-value=5.9e-05  Score=74.40  Aligned_cols=51  Identities=16%  Similarity=0.080  Sum_probs=40.1

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHH
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .+.....++|.+...+.|.+.+....          ...+.+.|+|++|+|||+||+.++.
T Consensus       119 ~P~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          119 VPQRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence            34455679999999999998875321          2345689999999999999999964

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.92  E-value=1.4e-05  Score=76.50  Aligned_cols=57  Identities=25%  Similarity=0.386  Sum_probs=36.0

Q ss_pred             ccccccCCCCCCCccc-ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          44 KDIVQTDTGVGWDDIA-GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        44 ~~~~~~~~~~~~~~l~-G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..++.+.+|+++- +|..+...+...+..             ....++|.|++|||||+++.+++..+
T Consensus        12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             ---------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3566778889999885 555555555554432             12379999999999999999998776

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.91  E-value=0.00016  Score=77.07  Aligned_cols=54  Identities=13%  Similarity=0.099  Sum_probs=42.0

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+.....++|.++..+.|.+.+....          ...+-+.|+|+.|+|||+||+.+++.
T Consensus       117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          117 GGVPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             TTCCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            3445556779999999999998885321          23456889999999999999998765

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.90  E-value=2.3e-05  Score=71.56  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCcccc-c--------------------cc---c
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTS-K--------------------HY---G  131 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~-~--------------------~~---~  131 (343)
                      ++.++..++|+||||+|||+++..+|...         +..+++++...-.. .                    ++   .
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~  182 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI  182 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence            45666779999999999999999999765         45677776654210 0                    00   0


Q ss_pred             chH---HHHHHHHHHHHH-cCCcEEEEcccccccC
Q psy7809         132 ESE---KLVRALFETARA-RAPAVIFIDEVDAFCS  162 (343)
Q Consensus       132 ~~~---~~i~~~~~~a~~-~~p~il~iDeid~l~~  162 (343)
                      ...   ..+..+...... ..+.+|+||.+..+..
T Consensus       183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~  217 (324)
T 2z43_A          183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR  217 (324)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence            011   123344444455 6789999999998864

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.87  E-value=2.4e-05  Score=72.03  Aligned_cols=79  Identities=16%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCcccc-c-------c-----------------
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTS-K-------H-----------------  129 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~-~-------~-----------------  129 (343)
                      +++.++.-++|+||||+|||+++..+|...         +..+++++...... .       .                 
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~  196 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA  196 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence            345666778999999999999999999862         45677776654211 0       0                 


Q ss_pred             --ccchHHHHHHHHHHHHH--cCCcEEEEcccccccC
Q psy7809         130 --YGESEKLVRALFETARA--RAPAVIFIDEVDAFCS  162 (343)
Q Consensus       130 --~~~~~~~i~~~~~~a~~--~~p~il~iDeid~l~~  162 (343)
                        .......+..+......  ..+.+|+||.+..+..
T Consensus       197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~  233 (343)
T 1v5w_A          197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR  233 (343)
T ss_dssp             CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence              00111222333344455  6688999999998874

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.87  E-value=2.5e-05  Score=89.03  Aligned_cols=123  Identities=21%  Similarity=0.261  Sum_probs=71.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEcCCccccccccchHHHHHHHHHHH----HH------------cCCc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVLPSSLTSKHYGESEKLVRALFETA----RA------------RAPA  150 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a----~~------------~~p~  150 (343)
                      ...++||+||+|||||+++..+...+ +.+++.++++.-..      ...+...+...    ..            ....
T Consensus      1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A         1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp             TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence            44689999999999998876655443 55677777765332      22333333321    00            1124


Q ss_pred             EEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCC-----CCCCEEEEEecCCCC-----CCCHHHhccccCcc
Q psy7809         151 VIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGS-----GDKGVLVLAATNHPW-----DLDEALKRRFEKRI  217 (343)
Q Consensus       151 il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i  217 (343)
                      |+||||++.-....-+....-.++.+++..- +.....     ...++.+|+|+|.|.     .++++++|||....
T Consensus      1377 VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A         1377 VVFCDEINLPSTDKYGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp             EEEETTTTCCCCCTTSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred             EEEecccCCCCccccccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence            9999999854322111222334444444321 111111     123678999999883     58999999886643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.87  E-value=3.4e-05  Score=73.83  Aligned_cols=122  Identities=18%  Similarity=0.136  Sum_probs=83.4

Q ss_pred             CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe---------cC---CCCCCCHHHhccccCc
Q psy7809         149 PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA---------TN---HPWDLDEALKRRFEKR  216 (343)
Q Consensus       149 p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t---------tn---~~~~l~~~l~~rf~~~  216 (343)
                      |.|+||||+|.|         .....+.|++.++..     ...++|++|         ++   .+..+++.+++||...
T Consensus       296 ~~VliIDEa~~l---------~~~a~~aLlk~lEe~-----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~  361 (456)
T 2c9o_A          296 PGVLFVDEVHML---------DIECFTYLHRALESS-----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMII  361 (456)
T ss_dssp             ECEEEEESGGGC---------BHHHHHHHHHHTTST-----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEE
T ss_pred             ceEEEEechhhc---------CHHHHHHHHHHhhcc-----CCCEEEEecCCccccccccccccccccCChhHHhhccee
Confidence            469999999988         346778888888744     334544455         32   2678999999988764


Q ss_pred             ch-------HHHHHhhhhcCCCC-CCcccHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy7809         217 IS-------PIQIIGLCLGEIRK-DPNVDVATLSKQL-IGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNN  287 (343)
Q Consensus       217 i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t-~g~s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~  287 (343)
                      -.       ..++++..+..... .++..+..++..+ .| +++....+++.|...|..+...                 
T Consensus       362 ~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~-----------------  423 (456)
T 2c9o_A          362 RTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKD-----------------  423 (456)
T ss_dssp             ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCS-----------------
T ss_pred             eCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCC-----------------
Confidence            22       44555544432221 2344567888888 66 7888888899888777654211                 


Q ss_pred             CCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         288 IGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                                   .       |+.+|+..|+.-+-
T Consensus       424 -------------~-------v~~~~v~~~~~~~~  438 (456)
T 2c9o_A          424 -------------S-------IEKEHVEEISELFY  438 (456)
T ss_dssp             -------------S-------BCHHHHHHHHHHSC
T ss_pred             -------------c-------cCHHHHHHHHHHhc
Confidence                         2       99999999998873

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.86  E-value=4.9e-05  Score=70.10  Aligned_cols=78  Identities=23%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc----c------------cchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH----Y------------GESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~----~------------~~~~~~i~~~~~~a~  145 (343)
                      ++.++..++|+||||+|||+|+..++...   +..+.+++...-....    .            ......+..+...+.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~  136 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR  136 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence            34566779999999999999999998654   5566666654321100    0            111222222222333


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...|.+|+||++..+..
T Consensus       137 ~~~~~lIVIDsl~~l~~  153 (349)
T 2zr9_A          137 SGALDIIVIDSVAALVP  153 (349)
T ss_dssp             TTCCSEEEEECGGGCCC
T ss_pred             cCCCCEEEEcChHhhcc
Confidence            45689999999999873

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.84  E-value=0.00012  Score=63.49  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=27.6

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      ++.++..++|+||||+|||+++..++...   +..+++++
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            34566789999999999999998887543   44555554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.80  E-value=1.3e-05  Score=66.72  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +..++|.|++||||||+++.+|..++.+++..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            457999999999999999999999999887653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.80  E-value=1.8e-05  Score=65.30  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ..++|.|+||+||||+++.++..++.+++.++.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~   36 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV   36 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence            468999999999999999999999988877554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.80  E-value=6.7e-05  Score=69.33  Aligned_cols=78  Identities=24%  Similarity=0.270  Sum_probs=50.3

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccc----c-----------cchHHHHHHHHH-HHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKH----Y-----------GESEKLVRALFE-TAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~----~-----------~~~~~~i~~~~~-~a~  145 (343)
                      ++.++..++|+|+||+|||++|..++...   +..+.+++...-....    .           ......+..++. ...
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~  138 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  138 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence            34566789999999999999999998654   5677777764322100    0           001122222222 233


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...+.+|+||.+..+..
T Consensus       139 ~~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          139 SGAVDVIVVDSVAALTP  155 (356)
T ss_dssp             HTCCSEEEEECGGGCCC
T ss_pred             ccCCCEEEEcCHHHhcc
Confidence            56789999999999874

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.76  E-value=6.1e-05  Score=70.64  Aligned_cols=78  Identities=19%  Similarity=0.172  Sum_probs=48.8

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---------CCceEEEcCCccccc---------------------ccc---
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---------GSTFFNVLPSSLTSK---------------------HYG---  131 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---------~~~~~~v~~~~l~~~---------------------~~~---  131 (343)
                      ++.+..-++|+||||+|||+|++.++...         +...++++..+....                     .+.   
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~  253 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY  253 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence            45666779999999999999999876433         233666665442110                     000   


Q ss_pred             ---chHHHHHHHHHHHHHcCCcEEEEcccccccC
Q psy7809         132 ---ESEKLVRALFETARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       132 ---~~~~~i~~~~~~a~~~~p~il~iDeid~l~~  162 (343)
                         .....+..+...+....|.+|+||++-.+..
T Consensus       254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~  287 (400)
T 3lda_A          254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR  287 (400)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred             ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence               0112233334444556789999999988775

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=1.6e-05  Score=67.13  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++..++|.||+||||||+++.+|..++.+++..+
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d   57 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD   57 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence            45568999999999999999999999998877653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.76  E-value=0.0001  Score=63.90  Aligned_cols=98  Identities=19%  Similarity=0.190  Sum_probs=57.7

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcCCccccc--------------------------------
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLPSSLTSK--------------------------------  128 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~~~l~~~--------------------------------  128 (343)
                      ++.++.-++|+|+||+|||++|..+|..    .+.++++++...-...                                
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  105 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG  105 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence            4466678999999999999999887643    3556666543211000                                


Q ss_pred             ----------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         129 ----------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       129 ----------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                                ........+..+........+.++++|.+..+................|.....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~  169 (251)
T 2zts_A          106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL  169 (251)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH
T ss_pred             cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHH
Confidence                      000112234445555667788899999998876432222333344445554444

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.74  E-value=6.5e-05  Score=82.59  Aligned_cols=78  Identities=27%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccc----------------cchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHY----------------GESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~----------------~~~~~~i~~~~~~a~  145 (343)
                      ++.++..++|+||||||||+|+.+++.+.   |.+..+++..+......                ...+....-......
T Consensus      1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A         1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence            46778899999999999999999997543   67788887766543211                111222222333344


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...|++|+||++..+.+
T Consensus      1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A         1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp             HTCCSEEEESCGGGCCC
T ss_pred             hCCCCEEEECCcccccc
Confidence            56799999999999954

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.68  E-value=7.1e-05  Score=64.17  Aligned_cols=29  Identities=31%  Similarity=0.292  Sum_probs=24.5

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ++.++.-+.|.||+|+|||||++.++...
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34566779999999999999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.66  E-value=4.1e-05  Score=63.89  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=29.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+..++|.|+||+||||+++.++..++..++..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~   36 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK   36 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence            3456789999999999999999999998876654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.66  E-value=3.3e-05  Score=63.08  Aligned_cols=31  Identities=19%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++|.|++|+||||+++.++..++.+++..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            5789999999999999999999998876654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.64  E-value=3.3e-05  Score=63.91  Aligned_cols=33  Identities=48%  Similarity=0.722  Sum_probs=28.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+..++|+|+||+||||+++.++..++..++..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~   42 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV   42 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence            345799999999999999999999999877654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.62  E-value=3.4e-05  Score=63.07  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ...+++|.|++||||||+++.+|..++.+++..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~   38 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDT   38 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            346899999999999999999999999988765

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.61  E-value=0.00014  Score=65.53  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=47.7

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh-----CCceEEEcCCccccc----------------cccchHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH-----GSTFFNVLPSSLTSK----------------HYGESEKLVRALFET  143 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l-----~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~  143 (343)
                      ++.+. -++|+||||+|||+|+-.++...     +....+++..+-...                .....+...-.+...
T Consensus        25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~  103 (333)
T 3io5_A           25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ  103 (333)
T ss_dssp             CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred             CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence            34444 68999999999999988886543     566777776442210                001112210122222


Q ss_pred             ---HHHcCCcEEEEcccccccC
Q psy7809         144 ---ARARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       144 ---a~~~~p~il~iDeid~l~~  162 (343)
                         .....|.+|+||-+..+.+
T Consensus       104 l~~i~~~~~~lvVIDSI~aL~~  125 (333)
T 3io5_A          104 LDAIERGEKVVVFIDSLGNLAS  125 (333)
T ss_dssp             HHTCCTTCCEEEEEECSTTCBC
T ss_pred             HHHhhccCceEEEEeccccccc
Confidence               2345789999999999975

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.61  E-value=0.00012  Score=64.19  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      ..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~   68 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF   68 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence            455679999999999999999999999866677776554

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.59  E-value=5e-05  Score=62.22  Aligned_cols=31  Identities=35%  Similarity=0.698  Sum_probs=26.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      +..+.|.||+||||||+++.++..++..++.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id   34 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD   34 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            3468999999999999999999999876554

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.58  E-value=0.00015  Score=66.85  Aligned_cols=28  Identities=32%  Similarity=0.356  Sum_probs=24.6

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.++.-+.|+||+|+|||+|++.++...
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4566678999999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.58  E-value=4e-05  Score=63.59  Aligned_cols=31  Identities=26%  Similarity=0.520  Sum_probs=27.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .|+|.|+||+||||+++.++..++.+++..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D   34 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   34 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence            5899999999999999999999998877653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.58  E-value=0.00018  Score=66.38  Aligned_cols=71  Identities=18%  Similarity=0.322  Sum_probs=45.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEc-CCccccc---------cccchHHHHHHHHHHHHHcCCcEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVL-PSSLTSK---------HYGESEKLVRALFETARARAPAVIF  153 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~-~~~l~~~---------~~~~~~~~i~~~~~~a~~~~p~il~  153 (343)
                      +...++|.||+|+||||++++++..+.    ..++.+. ..++...         ..+.....+...+..+....|.+|+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil  201 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL  201 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence            344689999999999999999987652    3333321 1111110         0111112244567777788999999


Q ss_pred             Ecccc
Q psy7809         154 IDEVD  158 (343)
Q Consensus       154 iDeid  158 (343)
                      +||+-
T Consensus       202 lDEp~  206 (356)
T 3jvv_A          202 VGEMR  206 (356)
T ss_dssp             ESCCC
T ss_pred             cCCCC
Confidence            99993

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.56  E-value=4.1e-05  Score=63.77  Aligned_cols=32  Identities=41%  Similarity=0.632  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH-hCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ-HGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~-l~~~~~~v  120 (343)
                      +..++|+|++||||||+++.++.. ++.+++.+
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~   42 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV   42 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence            457999999999999999999999 68776654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.55  E-value=5.5e-05  Score=62.31  Aligned_cols=30  Identities=33%  Similarity=0.564  Sum_probs=27.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.|+||+||||+++.+|..++.+++..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~   35 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS   35 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence            589999999999999999999999877654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.55  E-value=0.00018  Score=63.42  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCcc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSL  125 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l  125 (343)
                      +.-|+|.|+||+||||+++.++..   .|..++.++...+
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~   43 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI   43 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence            456899999999999999999987   6777776665443

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.54  E-value=0.0004  Score=59.71  Aligned_cols=72  Identities=22%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc-------cccccccch-----HHHHHHHHHHHHH----cC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS-------LTSKHYGES-----EKLVRALFETARA----RA  148 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~-------l~~~~~~~~-----~~~i~~~~~~a~~----~~  148 (343)
                      +..-++++||+|+||||++..++..+   +..++.+.+..       +... .|..     ......++..+..    ..
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~   89 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE   89 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence            34457788999999999999888766   45555553211       1111 1100     0112344554443    34


Q ss_pred             CcEEEEcccccc
Q psy7809         149 PAVIFIDEVDAF  160 (343)
Q Consensus       149 p~il~iDeid~l  160 (343)
                      +.+|+|||+..+
T Consensus        90 ~dvViIDEaQ~l  101 (223)
T 2b8t_A           90 TKVIGIDEVQFF  101 (223)
T ss_dssp             CCEEEECSGGGS
T ss_pred             CCEEEEecCccC
Confidence            789999999876

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.54  E-value=0.00012  Score=66.68  Aligned_cols=28  Identities=21%  Similarity=0.144  Sum_probs=24.0

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ++.++..++|+||||+|||+++..+|..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456667999999999999999999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.53  E-value=0.00065  Score=64.25  Aligned_cols=73  Identities=18%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------ccccchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------KHYGESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------~~~~~~~~~i~~~~~~a  144 (343)
                      ++..+++.|++|+||||++..+|..+   |..+..+.+.....                    .........+...+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46778999999999999999998766   55565555432211                    01122334456667777


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ....+.+++||....+
T Consensus       179 ~~~~~DvVIIDTaGrl  194 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRH  194 (443)
T ss_dssp             HHTTCSEEEEECCCCS
T ss_pred             HhCCCCEEEEECCCcc
Confidence            7777799999988544

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.52  E-value=6.1e-05  Score=63.50  Aligned_cols=33  Identities=33%  Similarity=0.539  Sum_probs=28.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+..|+|.|+||+||||+++.++..++.+++.+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~   51 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST   51 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            344689999999999999999999999887654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.51  E-value=5.9e-05  Score=63.04  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+..++|.|+|||||||+++.++..++.+++..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   40 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST   40 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            3456799999999999999999999999876654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.49  E-value=6.4e-05  Score=62.37  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=27.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..++|.|+|||||||+++.++..++.+++..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~   35 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST   35 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence            34689999999999999999999998765543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.49  E-value=6e-05  Score=62.93  Aligned_cols=31  Identities=16%  Similarity=0.072  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v  120 (343)
                      .-++++||+|+|||+++..++..+   +..++.+
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            357899999999999997666543   5544443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.49  E-value=5.3e-05  Score=63.60  Aligned_cols=23  Identities=39%  Similarity=0.671  Sum_probs=20.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+.|.||+|+||||+++.++..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            47899999999999999999876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.49  E-value=6.2e-05  Score=62.71  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=30.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .++..+.|.||+|+||||+++.++..++...+.++..+
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~   44 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD   44 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence            45567899999999999999999988776666666544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.49  E-value=7.1e-05  Score=65.78  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=28.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      .++|.||+||||||+++.+|..++..++..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~   34 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR   34 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence            47899999999999999999999988877654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.49  E-value=8.8e-05  Score=63.50  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ++..++|.|+||+||||+++.+|..++.+++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   35 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT   35 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence            446789999999999999999999999876654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.47  E-value=6.6e-05  Score=62.57  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..|+|.|+|||||||+++.++..++.+++..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   34 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA   34 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            35689999999999999999999999876543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.46  E-value=8.9e-05  Score=62.53  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=28.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..++|.|++|+||||+++.++..++..++..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~   49 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG   49 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence            45799999999999999999999998776654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.46  E-value=6.9e-05  Score=61.31  Aligned_cols=30  Identities=27%  Similarity=0.519  Sum_probs=26.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.|++|+||||+++.++..++.+++..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~   33 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALGYEFVDT   33 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence            589999999999999999999999876654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.46  E-value=0.00012  Score=63.82  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+..|+|.||||+||||+++.++..++..++.+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            4567899999999999999999999998776654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.45  E-value=0.00017  Score=61.89  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      ..+++.|++|+||||++-.+|..+   |..+..++.
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~   42 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV   42 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            468999999999999999998765   556554443

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.45  E-value=0.00014  Score=71.53  Aligned_cols=98  Identities=27%  Similarity=0.379  Sum_probs=53.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccc----hHHHHHHHHHHH---------HHcCCcEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGE----SEKLVRALFETA---------RARAPAVIF  153 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~----~~~~i~~~~~~a---------~~~~p~il~  153 (343)
                      ..++|.||||||||+++.+++..+   +..+..+.+..-......+    ....+..++...         .....++|+
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI  284 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI  284 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence            568999999999999999998754   4555544332211110000    000122222100         011346999


Q ss_pred             EcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         154 IDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       154 iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      |||+..+         ....+..|+..+.   .   ..+++++|-.+..
T Consensus       285 IDEasml---------~~~~~~~Ll~~~~---~---~~~lilvGD~~QL  318 (574)
T 3e1s_A          285 VDEVSMM---------GDALMLSLLAAVP---P---GARVLLVGDTDQL  318 (574)
T ss_dssp             ECCGGGC---------CHHHHHHHHTTSC---T---TCEEEEEECTTSC
T ss_pred             EcCccCC---------CHHHHHHHHHhCc---C---CCEEEEEeccccc
Confidence            9999665         2345556665543   1   2367777766653

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.44  E-value=0.00069  Score=58.75  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=27.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      .++++||+|+|||.++..++..++..++.+.+.
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~  142 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  142 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence            589999999999999999998887766666543

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.44  E-value=0.00032  Score=58.82  Aligned_cols=108  Identities=17%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc---------cccccc-------------c----chHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS---------LTSKHY-------------G----ESEKLVRAL  140 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~---------l~~~~~-------------~----~~~~~i~~~  140 (343)
                      ..+++|+++|.||||+|-.+|-+.   |..+..+....         +.....             .    .........
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~  108 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV  108 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence            468999999999999999997654   66666663221         111110             0    012234445


Q ss_pred             HHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhc
Q psy7809         141 FETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR  211 (343)
Q Consensus       141 ~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~  211 (343)
                      +..+..    ...++|+|||+-....-+-      --...++..+...     +...-||.|.|.+.   +.++.
T Consensus       109 l~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~ev~~~l~~R-----p~~~~vIlTGr~ap---~~l~e  169 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEEVISALNAR-----PGHQTVIITGRGCH---RDILD  169 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHHHHHHHHTS-----CTTCEEEEECSSCC---HHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHHHHHHHHhC-----cCCCEEEEECCCCc---HHHHH
Confidence            555544    3468999999965322100      0011344444322     33567888888753   45554

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.41  E-value=7.7e-05  Score=64.22  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+..++|.|+||+||||+++.++..++..++.+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   38 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS   38 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence            446799999999999999999999998876654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.41  E-value=0.00018  Score=64.42  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      .+..++|.||||+||||+++.++.++...++.+++..+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~   69 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   69 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence            45678999999999999999999998655667766444

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.41  E-value=7.6e-05  Score=61.69  Aligned_cols=30  Identities=30%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      +..++|.|+||+||||+++.++..++.+++
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            356899999999999999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.40  E-value=8.6e-05  Score=62.16  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..++|.|+||+||||+++.++..++.+++..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   43 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST   43 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            35689999999999999999999999766554

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.40  E-value=0.00012  Score=62.64  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=28.2

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ...++.|+|.||||+||+|.|+.++..++.+.+
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI   58 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL   58 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence            356677899999999999999999999986544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.40  E-value=0.0001  Score=60.02  Aligned_cols=29  Identities=34%  Similarity=0.605  Sum_probs=25.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.||||+||||+++.+ ..++.+++.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~   31 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAKVIVM   31 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence            4789999999999999999 8888886654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.38  E-value=0.0001  Score=62.11  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=28.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+..|+|.|++||||||+++.++..++..++..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~   46 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   46 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence            345689999999999999999999998876654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.38  E-value=0.00015  Score=59.58  Aligned_cols=32  Identities=31%  Similarity=0.489  Sum_probs=27.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ++..++|.||+|+||||+++.++..+|..++.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~   38 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD   38 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence            34568899999999999999999998866554

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.38  E-value=9.5e-05  Score=62.97  Aligned_cols=30  Identities=27%  Similarity=0.459  Sum_probs=26.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.||||+||||+++.++..++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            478999999999999999999999877655

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.38  E-value=9e-05  Score=63.17  Aligned_cols=30  Identities=23%  Similarity=0.512  Sum_probs=26.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.||||+||||+++.++.+++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            478999999999999999999998877655

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.38  E-value=9.8e-05  Score=60.13  Aligned_cols=30  Identities=23%  Similarity=0.407  Sum_probs=26.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .|+|.|++|+||||+++.++..++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   31 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV   31 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            478999999999999999999999887654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.38  E-value=0.00057  Score=65.03  Aligned_cols=39  Identities=26%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~  122 (343)
                      +++.++.-++|.|+||+|||+++..+|...    +.++.+++.
T Consensus       195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            445677779999999999999999997643    456666654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.37  E-value=9e-05  Score=65.45  Aligned_cols=72  Identities=26%  Similarity=0.384  Sum_probs=43.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEc-CCccccc---------cccchHHHHHHHHHHHHHcCCcEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVL-PSSLTSK---------HYGESEKLVRALFETARARAPAVI  152 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~-~~~l~~~---------~~~~~~~~i~~~~~~a~~~~p~il  152 (343)
                      .+...++|.||+|+||||++++++..+.    ..++... .-+....         .++.....++..+..+....|.+|
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il  102 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI  102 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence            4556789999999999999999987652    2222211 0010000         000011124556666666789999


Q ss_pred             EEcccc
Q psy7809         153 FIDEVD  158 (343)
Q Consensus       153 ~iDeid  158 (343)
                      ++||.-
T Consensus       103 llDEp~  108 (261)
T 2eyu_A          103 FVGEMR  108 (261)
T ss_dssp             EESCCC
T ss_pred             EeCCCC
Confidence            999993

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.37  E-value=8.9e-05  Score=60.96  Aligned_cols=28  Identities=32%  Similarity=0.457  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHH-HhCCce
Q psy7809          90 RGILLFGPPGTGKTLLAKAVAS-QHGSTF  117 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~-~l~~~~  117 (343)
                      .-++|.|+||+||||+++.++. .++..+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~   31 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYN   31 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence            4688999999999999999998 455433

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.37  E-value=0.00015  Score=62.64  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+..++|.|+||+||||+++.+|..++..++..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   47 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   47 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            445799999999999999999999999776654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.37  E-value=0.00011  Score=60.98  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ..++|.|+||+||||+++.++..++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999887

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.36  E-value=0.00016  Score=60.91  Aligned_cols=32  Identities=38%  Similarity=0.667  Sum_probs=27.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ++..+.|.||+|+||||+++.++..+|..++.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~   59 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE   59 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence            45578899999999999999999999765544

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.35  E-value=0.00016  Score=59.98  Aligned_cols=32  Identities=19%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..++|.|++||||||+++.++..++.+++..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~   37 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA   37 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence            35689999999999999999999999776654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.35  E-value=0.0016  Score=58.71  Aligned_cols=73  Identities=22%  Similarity=0.263  Sum_probs=45.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------ccccchHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------KHYGESEKLVRALFET  143 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------~~~~~~~~~i~~~~~~  143 (343)
                      .++..++|.||+|+||||++..+|..+   +..+..+++.....                    ...+.........+..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~  181 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH  181 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            455678899999999999999999765   44454444322110                    0011122223334555


Q ss_pred             HHHcCCcEEEEccccc
Q psy7809         144 ARARAPAVIFIDEVDA  159 (343)
Q Consensus       144 a~~~~p~il~iDeid~  159 (343)
                      +....|.+++||+.-.
T Consensus       182 a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          182 ALARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHTTCSEEEEEECCC
T ss_pred             HHhcCCCEEEEECCCc
Confidence            5667789999998853

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.35  E-value=0.00012  Score=62.69  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .+..++|.|+||+||||+++.+|..++..++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~   35 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS   35 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            34578999999999999999999999976544

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.34  E-value=0.0013  Score=58.77  Aligned_cols=27  Identities=26%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-++|.||||+|||++++.+|..+
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            566778999999999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.33  E-value=0.00058  Score=65.17  Aligned_cols=39  Identities=18%  Similarity=0.119  Sum_probs=30.4

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~  122 (343)
                      +++.++.-++|.|+||+|||+++..+|...    +.++.+++.
T Consensus       198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            345777789999999999999999998653    456666654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.33  E-value=0.00084  Score=59.60  Aligned_cols=27  Identities=33%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+..++|+||+|+|||+|+..++..+
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            556679999999999999999998643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.33  E-value=0.00014  Score=62.11  Aligned_cols=31  Identities=23%  Similarity=0.534  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..++|.|+||+||||+++.+|..++.+++..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            4689999999999999999999999877665

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.30  E-value=0.00013  Score=66.91  Aligned_cols=30  Identities=23%  Similarity=0.553  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .+++|.|++|+|||++++++|..++.+|+.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~   54 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKYHT   54 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence            469999999999999999999999887744

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.27  E-value=0.00019  Score=60.97  Aligned_cols=29  Identities=34%  Similarity=0.645  Sum_probs=25.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .++|.||||+||+|.|+.+|+.++.+.+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is   30 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS   30 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence            47889999999999999999999876544

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.24  E-value=0.00028  Score=58.14  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      .+..+.|.|++|+||||+++.++..+   |.+++.++.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~   41 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   41 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence            34568899999999999999999988   888887764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.24  E-value=0.00021  Score=60.01  Aligned_cols=34  Identities=18%  Similarity=0.059  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh-CCceEEEc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH-GSTFFNVL  121 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~v~  121 (343)
                      .+..|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~   37 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN   37 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence            34578999999999999999999998 56666654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.24  E-value=0.00024  Score=61.89  Aligned_cols=33  Identities=24%  Similarity=0.558  Sum_probs=27.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ..+..+.|.||+|+||||+++.++..++...+.
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~   57 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS   57 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            345679999999999999999999999875443

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.24  E-value=0.003  Score=57.21  Aligned_cols=39  Identities=18%  Similarity=0.028  Sum_probs=29.9

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      +++.++.-++|.|+||+|||+++..+|...   +.++.+++.
T Consensus        63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            345677789999999999999999998654   345666543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.23  E-value=0.00027  Score=60.47  Aligned_cols=30  Identities=33%  Similarity=0.443  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ..+.|.||+||||||+++.++..++.+++.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d   35 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD   35 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            468899999999999999999999876554

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.22  E-value=0.00023  Score=60.55  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=26.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.|+||+||||+++.++..++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            478999999999999999999999877665

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.22  E-value=0.00091  Score=72.78  Aligned_cols=78  Identities=27%  Similarity=0.296  Sum_probs=58.5

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCc----------------cccccccchHHHHHHHHHHHHH
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSS----------------LTSKHYGESEKLVRALFETARA  146 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~----------------l~~~~~~~~~~~i~~~~~~a~~  146 (343)
                      .+..+.+.+|||+|||||+||-.++.+   .|....+++...                +....+...+..+..+...++.
T Consensus      1428 ~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s 1507 (1706)
T 3cmw_A         1428 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1507 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHc
Confidence            344456999999999999999888643   355666665532                2223445557778888888899


Q ss_pred             cCCcEEEEcccccccCC
Q psy7809         147 RAPAVIFIDEVDAFCSG  163 (343)
Q Consensus       147 ~~p~il~iDeid~l~~~  163 (343)
                      .++++|++|-+..|.+.
T Consensus      1508 ~~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A         1508 GAVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp             TCCSEEEESCSTTCCCT
T ss_pred             CCCCEEEEccHHhCCcc
Confidence            99999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.21  E-value=0.00032  Score=59.01  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .++..+.|.||+|+||||+++.++..+   |...+.++..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d   62 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD   62 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence            455678899999999999999999988   5543455443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.21  E-value=0.00027  Score=58.73  Aligned_cols=31  Identities=29%  Similarity=0.133  Sum_probs=27.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      .+.|.|++|+||||+++.++..+   +.+++..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            37899999999999999999988   88877764

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=97.19  E-value=0.0018  Score=63.10  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh-------CCceEEEcCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH-------GSTFFNVLPS  123 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~~v~~~  123 (343)
                      .++|+.|.+|+|||++++.+...+       ...++.+++.
T Consensus       215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK  255 (574)
T 2iut_A          215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK  255 (574)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred             CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence            589999999999999999986644       2357777765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.19  E-value=0.00024  Score=64.49  Aligned_cols=33  Identities=36%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ..++|.||+|+|||++++.+|..++..++.++.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds   38 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS   38 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence            468999999999999999999999988888754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.18  E-value=0.00025  Score=59.47  Aligned_cols=28  Identities=29%  Similarity=0.638  Sum_probs=25.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      .+.|.|++|+||||+++.++..++..++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            4789999999999999999999998654

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=97.16  E-value=0.0044  Score=52.51  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=35.9

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhc-cccCh-HHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLL-PKLMP-QLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~-~~~~~-~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ...+|+++.-.+.+.+.+.+.-.. +...+ ...... .....+++.+|+|+|||..+-..+...
T Consensus        12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~li~~~TGsGKT~~~~~~~~~~   75 (220)
T 1t6n_A           12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQQ   75 (220)
T ss_dssp             --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCchhhhhhHHHHHh
Confidence            335688877677777777653211 11111 111111 223679999999999998776655443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.16  E-value=0.00033  Score=60.61  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=27.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .+..+.|.||+|+||||+++.++..++.+++.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d   39 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD   39 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            34578999999999999999999999876554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.15  E-value=0.0011  Score=62.54  Aligned_cols=73  Identities=18%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------------------c-cccchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------------------K-HYGESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------------------~-~~~~~~~~i~~~~~~a  144 (343)
                      ++..+++.||+|+||||++..+|..+   +..+..+.+.....                   . ............+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            45678899999999999999998766   55555554331110                   0 0011122234445555


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ....+.+++||....+
T Consensus       176 ~~~~~DvvIIDTaGr~  191 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRH  191 (433)
T ss_dssp             TTTTCSEEEEEECCCS
T ss_pred             HhcCCCEEEEECCCCc
Confidence            5556789999988654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.15  E-value=0.00029  Score=60.50  Aligned_cols=30  Identities=30%  Similarity=0.534  Sum_probs=26.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.|+||+||||+++.++..++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~   31 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES   31 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence            478999999999999999999998766554

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.11  E-value=0.00037  Score=61.02  Aligned_cols=33  Identities=39%  Similarity=0.554  Sum_probs=29.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +..+.|.|++|+||||+++.+|..++.+++..+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d   80 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD   80 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence            457999999999999999999999998877653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.11  E-value=0.00019  Score=59.54  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .|+|.|+||+||||+++.++..++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999886

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.09  E-value=0.00024  Score=59.79  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=25.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .+.|.|++||||||+++.++. ++.+++..+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d   32 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD   32 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence            578999999999999999999 887766553

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.08  E-value=0.00025  Score=65.88  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=43.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcC-Cccc-cc---cccc-----hHHHHHHHHHHHHHcCCcEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLP-SSLT-SK---HYGE-----SEKLVRALFETARARAPAVI  152 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~-~~l~-~~---~~~~-----~~~~i~~~~~~a~~~~p~il  152 (343)
                      .++..++|.||+|+||||++++++..+.    ..++.+.. .++. ..   ++..     ....+...+..+....|.+|
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i  213 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI  213 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence            4556789999999999999999987653    23333221 1110 00   0100     11123445556666789999


Q ss_pred             EEcccc
Q psy7809         153 FIDEVD  158 (343)
Q Consensus       153 ~iDeid  158 (343)
                      ++||+-
T Consensus       214 lldE~~  219 (372)
T 2ewv_A          214 FVGEMR  219 (372)
T ss_dssp             EESCCC
T ss_pred             EECCCC
Confidence            999993

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.08  E-value=0.00018  Score=60.94  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=24.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .+.-|+|.|++||||||+++.++..++..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~   37 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            34578999999999999999999987644

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.07  E-value=0.00031  Score=58.95  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=27.1

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+.|.|++||||||+++.++..+|.+++..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~   43 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV   43 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence            3578999999999999999999989877664

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.06  E-value=0.0045  Score=55.49  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP  122 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~  122 (343)
                      ..+..++|.||+|+||||++..+|..+    |..+..+++
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~  142 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT  142 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            345678899999999999999998655    445555554

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.04  E-value=0.00041  Score=58.50  Aligned_cols=28  Identities=21%  Similarity=0.062  Sum_probs=24.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      +.-|+|.|+||+||||+++.++..++..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            3468899999999999999999998763

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.03  E-value=0.00022  Score=60.43  Aligned_cols=28  Identities=18%  Similarity=0.128  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .+..|+|.|++|+||||+++.++..++.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4567899999999999999999998753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.01  E-value=0.00051  Score=57.77  Aligned_cols=30  Identities=27%  Similarity=0.503  Sum_probs=26.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+.|.|++|+||||+++.++..++.+++..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~   33 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSS   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence            578999999999999999999999777654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.01  E-value=0.00041  Score=58.54  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=25.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ..+..++|.||+|+||||+++.++..+.
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            5667799999999999999999999874

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=97.00  E-value=0.002  Score=66.95  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +|.+..++.|.+.+...           ...+-+.|+|+.|+|||+||+.+++.
T Consensus       131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d  173 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS  173 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence            89999999988877531           22456889999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.00  E-value=0.00059  Score=59.77  Aligned_cols=32  Identities=31%  Similarity=0.363  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ++..+.|.||+|+||||+++.++..+|..++.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d   57 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD   57 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence            34568899999999999999999999976553

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.99  E-value=0.0057  Score=58.07  Aligned_cols=39  Identities=18%  Similarity=0.028  Sum_probs=30.8

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      +++.++.-++|.|+||+|||+++..+|...   +.++.+++.
T Consensus       192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl  233 (444)
T 3bgw_A          192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  233 (444)
T ss_dssp             SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence            345677789999999999999999987654   566776654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.97  E-value=0.00046  Score=58.21  Aligned_cols=29  Identities=28%  Similarity=0.366  Sum_probs=24.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+.|.||+||||||+++.++. +|.+++..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~   32 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA   32 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence            578999999999999999987 78776643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.96  E-value=0.00038  Score=63.42  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      +..++|.||+|+|||+|+..+|+.++..++..+.
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds   73 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK   73 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence            3468899999999999999999999887776544

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.95  E-value=0.00063  Score=56.96  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+..+.|.|++||||||+++.++.. |.+++..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~   38 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL   38 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence            4457899999999999999999998 7766654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.94  E-value=0.0007  Score=57.63  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=26.3

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..+.|.|++||||||+++.++. +|.+++..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~   34 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA   34 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence            45688999999999999999998 88766654

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.90  E-value=0.0062  Score=58.69  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=26.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh-------CCceEEEcCC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH-------GSTFFNVLPS  123 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l-------~~~~~~v~~~  123 (343)
                      ..++|+.|++|+|||++++.+...+       ...++.+++.
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            4689999999999999999987533       2346666654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.90  E-value=0.00083  Score=58.70  Aligned_cols=40  Identities=15%  Similarity=0.052  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCce--------EEEcCCcccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTF--------FNVLPSSLTS  127 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~--------~~v~~~~l~~  127 (343)
                      .+..|.|.|++||||||+++.++..++.++        ..++..++..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            345688999999999999999999998763        3555555543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.90  E-value=0.0043  Score=58.43  Aligned_cols=94  Identities=18%  Similarity=0.284  Sum_probs=54.4

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC---ceEEEc-CCcccc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS---TFFNVL-PSSLTS  127 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~---~~~~v~-~~~l~~  127 (343)
                      ...++++.-.......+...+.             .+...++|.||+|+||||++++++..+..   .++.+. ..++..
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~  209 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI  209 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred             CCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence            4566676544555555555432             23345889999999999999999988743   333332 111110


Q ss_pred             c-----ccc-chHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         128 K-----HYG-ESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       128 ~-----~~~-~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      .     .+. ...-.+...+..+....|.++++.|+.
T Consensus       210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR  246 (418)
T 1p9r_A          210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR  246 (418)
T ss_dssp             SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred             CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence            0     011 111123444555556789999999863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.87  E-value=0.00076  Score=60.64  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      +.-++|.||+|+|||+|+..+|..++..++..+.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            4567899999999999999999999877766543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.86  E-value=0.0065  Score=59.01  Aligned_cols=112  Identities=18%  Similarity=0.173  Sum_probs=60.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHH--HHHh--CCceEEEcCCccc------------------------c----------c
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAV--ASQH--GSTFFNVLPSSLT------------------------S----------K  128 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~i--a~~l--~~~~~~v~~~~l~------------------------~----------~  128 (343)
                      .++..++|.||+|+|||||++.+  +...  +...++++..+..                        .          .
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~  116 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQE  116 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCS
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhh
Confidence            45677999999999999999994  3332  3333333322100                        0          0


Q ss_pred             ccc--chHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCC
Q psy7809         129 HYG--ESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL  205 (343)
Q Consensus       129 ~~~--~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l  205 (343)
                      ...  .................|.+|+||++-.+.+...........+..++..+...       ++.+|.++.+.+.+
T Consensus       117 ~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-------g~tvl~itH~~~~~  188 (525)
T 1tf7_A          117 VVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-------GATTVMTTERIEEY  188 (525)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-------TCEEEEEEECSSSS
T ss_pred             hhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-------CCEEEEEecCCCCc
Confidence            000  01223344445555667899999999776543222223333344444444321       34566666665543

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=96.85  E-value=0.0064  Score=50.83  Aligned_cols=20  Identities=30%  Similarity=0.292  Sum_probs=16.5

Q ss_pred             CceEEEEcCCCchHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKA  108 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~  108 (343)
                      ..++++.+|+|+|||..+-.
T Consensus        38 ~~~~li~~~TGsGKT~~~~~   57 (207)
T 2gxq_A           38 GKDLIGQARTGTGKTLAFAL   57 (207)
T ss_dssp             TCCEEEECCTTSCHHHHHHH
T ss_pred             CCCEEEECCCCChHHHHHHH
Confidence            36799999999999987443

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.85  E-value=0.0053  Score=59.27  Aligned_cols=38  Identities=16%  Similarity=0.022  Sum_probs=30.1

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcC
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLP  122 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~  122 (343)
                      ++.++.-++|.|+||+|||+++..+|...    +.++.+++.
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~  279 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML  279 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence            45677779999999999999999998765    446666654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.84  E-value=0.0011  Score=57.40  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+..+.|.|++|+||||+++.++..+|.+++..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~   47 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT   47 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence            3455788999999999999999999999776543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.83  E-value=0.0012  Score=62.18  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .+.-++|.|+||+||||+++.++..++..++.
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~  288 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN  288 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence            34568899999999999999999988765443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.81  E-value=0.00068  Score=56.94  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+||||+++.++..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            345678899999999999999999876

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.80  E-value=0.0053  Score=59.93  Aligned_cols=44  Identities=18%  Similarity=0.018  Sum_probs=34.8

Q ss_pred             cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHH
Q psy7809          59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      +|.+..++.|.+.+....         ......+.|+|+.|+|||+||+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            499999999988774210         02346788999999999999999997

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.79  E-value=0.0006  Score=57.56  Aligned_cols=33  Identities=24%  Similarity=0.201  Sum_probs=26.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh-CCceEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH-GSTFFN  119 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l-~~~~~~  119 (343)
                      .++.-+.|.|++|+||||+++.++..+ +..++.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~   52 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS   52 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence            445568899999999999999999877 544443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.79  E-value=0.0011  Score=60.55  Aligned_cols=71  Identities=13%  Similarity=0.200  Sum_probs=44.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCC-cccc----c---cccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPS-SLTS----K---HYGESEKLVRALFETARARAPAVIFIDEV  157 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~-~l~~----~---~~~~~~~~i~~~~~~a~~~~p~il~iDei  157 (343)
                      +...++|.||+|+||||++++++..+..  ..+.+... ++..    .   ++.+.....+..+..+....|.+|++||.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~  249 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL  249 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence            4457999999999999999999987642  23333321 1110    0   11001122445556666778999999998


Q ss_pred             c
Q psy7809         158 D  158 (343)
Q Consensus       158 d  158 (343)
                      -
T Consensus       250 ~  250 (330)
T 2pt7_A          250 R  250 (330)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.78  E-value=0.00084  Score=55.46  Aligned_cols=26  Identities=19%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +.-+.|.||+|+|||||++.++..+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45688999999999999999998763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.77  E-value=0.0011  Score=56.46  Aligned_cols=31  Identities=35%  Similarity=0.509  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..+.|.|++|||||++++.++..++.+++..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~   34 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELSMIYVDT   34 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence            4688999999999999999999999776654

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=96.76  E-value=0.0047  Score=51.88  Aligned_cols=24  Identities=38%  Similarity=0.642  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++++.+|+|+|||.++-.++...
T Consensus        49 ~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           49 KNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999988777643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.76  E-value=0.00099  Score=55.18  Aligned_cols=35  Identities=26%  Similarity=0.191  Sum_probs=27.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEEc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNVL  121 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~  121 (343)
                      ..+..++|.|++|+||||+++.++..++   ..+..++
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            3456788999999999999999998874   3444444

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.75  E-value=0.0012  Score=55.93  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=29.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPS  123 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~  123 (343)
                      ..+..++|.|++|+||||+++.++..++    .+++.++..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            4456788999999999999999998764    456666543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.74  E-value=0.00084  Score=56.90  Aligned_cols=28  Identities=32%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++.-+.|.||+|+||||+++.++..+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3456688999999999999999998875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.73  E-value=0.00085  Score=59.79  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +..|.|.|++||||||+++.++ .+|.+++..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~  105 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS  105 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence            4568899999999999999999 678766554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.73  E-value=0.00084  Score=61.26  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=27.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .-++|.||+|+|||++++.+|..++..++..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D   39 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD   39 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence            36889999999999999999999986665554

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.72  E-value=0.0028  Score=62.68  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ...+++.|+||||||+++..+...+
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            3568999999999999988876554

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.71  E-value=0.0012  Score=54.97  Aligned_cols=25  Identities=40%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +.|+|.||+|+|||||++.+..+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCC
Confidence            3589999999999999999988764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.69  E-value=0.0011  Score=55.61  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ++.-+.|.||+|+||||+++.++..+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            445688999999999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.68  E-value=0.0012  Score=54.72  Aligned_cols=25  Identities=32%  Similarity=0.511  Sum_probs=21.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .++|.||+|+||||+++.++...+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~~g   28 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQLDN   28 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCC
Confidence            4789999999999999999986643

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.68  E-value=0.00097  Score=56.07  Aligned_cols=27  Identities=37%  Similarity=0.591  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ++..+.|.||+|+|||||++.++..+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            445789999999999999999998764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.65  E-value=0.0011  Score=59.61  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .-++|.||+|+|||+|+..+|..++..++..+
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D   35 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD   35 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence            35788999999999999999999886665544

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.62  E-value=0.0014  Score=55.39  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ..|.|.|++|||||++++.+|..+|.+|+.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            358899999999999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.61  E-value=0.0011  Score=59.24  Aligned_cols=29  Identities=31%  Similarity=0.488  Sum_probs=23.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh-CCceE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH-GSTFF  118 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l-~~~~~  118 (343)
                      .-++|.|+||+||||+++.++..+ +..++
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i   32 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI   32 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence            458899999999999999999874 54444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.56  E-value=0.0082  Score=58.27  Aligned_cols=96  Identities=21%  Similarity=0.149  Sum_probs=55.8

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccc--------------------------ccccc--chH
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLT--------------------------SKHYG--ESE  134 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~--------------------------~~~~~--~~~  134 (343)
                      +.++..++|.||+|+|||+|++.++...   |...+++...+-.                          .....  ...
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g  357 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE  357 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence            3566779999999999999999998654   3344444332110                          00000  123


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         135 KLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       135 ~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                      ...+.++..+....|.+|+||=+-.|...... ......+..++..+.
T Consensus       358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~-~~~~~~i~~ll~~l~  404 (525)
T 1tf7_A          358 DHLQIIKSEINDFKPARIAIDSLSALARGVSN-NAFRQFVIGVTGYAK  404 (525)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEcChHHHHhhCCh-HHHHHHHHHHHHHHH
Confidence            34555666677788999999966555432111 113344444555443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.54  E-value=0.0012  Score=55.45  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .+.+++|.||+|+|||++|..++.+.. .++..+
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD   65 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD   65 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence            346799999999999999999998865 544443

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.53  E-value=0.0052  Score=62.53  Aligned_cols=62  Identities=16%  Similarity=0.088  Sum_probs=39.8

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccCh-HHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMP-QLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~-~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +...|+++.-.+.+.+.+...-..|.... ......+.....+++.||+|+|||+++..++..
T Consensus        70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A           70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34568887777777777766554443221 112222344467999999999999987777544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.52  E-value=0.0016  Score=55.01  Aligned_cols=27  Identities=37%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ++..+.|.||+|+||||+++.++..++
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445688999999999999999999887

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.51  E-value=0.0019  Score=53.95  Aligned_cols=70  Identities=24%  Similarity=0.220  Sum_probs=40.8

Q ss_pred             CceEEEEcCCCchHH-HHHHHHHHHh--CCceEEEcCC---ccccccccchH--------HHHHHHHHHHHHcCCcEEEE
Q psy7809          89 WRGILLFGPPGTGKT-LLAKAVASQH--GSTFFNVLPS---SLTSKHYGESE--------KLVRALFETARARAPAVIFI  154 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT-~la~~ia~~l--~~~~~~v~~~---~l~~~~~~~~~--------~~i~~~~~~a~~~~p~il~i  154 (343)
                      ..-.++|||.|+||| .|.+++.+..  +..++.+.+.   ...........        ....+++...  ....+|+|
T Consensus        20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIlI   97 (195)
T 1w4r_A           20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI   97 (195)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEEE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEEE
Confidence            345788999999999 8888886543  5667776543   11111000000        0112233322  23579999


Q ss_pred             cccccc
Q psy7809         155 DEVDAF  160 (343)
Q Consensus       155 Deid~l  160 (343)
                      ||+.-+
T Consensus        98 DEaQFf  103 (195)
T 1w4r_A           98 DEGQFF  103 (195)
T ss_dssp             SSGGGC
T ss_pred             Echhhh
Confidence            999877

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.51  E-value=0.0015  Score=55.28  Aligned_cols=28  Identities=29%  Similarity=0.459  Sum_probs=24.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++.-+.|.||+|+|||||++.++..+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4456788999999999999999998875

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.51  E-value=0.0017  Score=60.57  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .-++|.||+|+|||+|+..+|..++..++..+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D   34 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD   34 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence            45789999999999999999999987666543

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.50  E-value=0.012  Score=58.64  Aligned_cols=71  Identities=24%  Similarity=0.245  Sum_probs=42.1

Q ss_pred             ccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccccccchHHH
Q psy7809          60 GLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYGESEKL  136 (343)
Q Consensus        60 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~~~~~~  136 (343)
                      -.+.+++++...+...              .-.||.||||||||+++-.+...+   +..+..+..          +...
T Consensus       190 LN~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~----------TN~A  245 (646)
T 4b3f_X          190 LDTSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP----------SNIA  245 (646)
T ss_dssp             CCHHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES----------SHHH
T ss_pred             CCHHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC----------chHH
Confidence            3578888888766421              246899999999998665554333   334433332          2344


Q ss_pred             HHHHHHHHHHcCCcEEEE
Q psy7809         137 VRALFETARARAPAVIFI  154 (343)
Q Consensus       137 i~~~~~~a~~~~p~il~i  154 (343)
                      +..+..........++-+
T Consensus       246 vD~i~erL~~~~~~ilRl  263 (646)
T 4b3f_X          246 VDNLVERLALCKQRILRL  263 (646)
T ss_dssp             HHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHhcCCceEEe
Confidence            555555555555455544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.46  E-value=0.003  Score=53.09  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=27.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      ..+.-+.|.|++|+||||+++.++..+   +..++.++
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~   57 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence            344568899999999999999999876   55555553

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.43  E-value=0.0019  Score=54.23  Aligned_cols=27  Identities=26%  Similarity=0.513  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .+.-+.|.||+|+|||||++.++....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            345688999999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.40  E-value=0.0072  Score=57.12  Aligned_cols=36  Identities=31%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .+..++|.|++|+||||++..+|..+   |..+..+++.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            34679999999999999999998766   4566666654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.40  E-value=0.0024  Score=51.69  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            455568899999999999999999987

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.39  E-value=0.002  Score=55.00  Aligned_cols=27  Identities=26%  Similarity=0.476  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|+|||||++.++..+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            455678899999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.36  E-value=0.0023  Score=54.05  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++.-+.|.||+|+|||||++.++..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4556688999999999999999998874

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.36  E-value=0.012  Score=53.54  Aligned_cols=27  Identities=26%  Similarity=0.214  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|+||||+++.+|..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            455678899999999999999999765

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.36  E-value=0.0022  Score=54.85  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=23.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++.-+.|.||+|+|||||++.++....
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            5566788999999999999999998764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.34  E-value=0.01  Score=57.17  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=44.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------------------cc-ccchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------------------KH-YGESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------------------~~-~~~~~~~i~~~~~~a  144 (343)
                      .+..|+|.|++|+||||++..+|..+   |..+..+++.....                   .. .......+...+..+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999766   55665555421110                   00 011122233445555


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      .+....++|||-...+
T Consensus       180 ~~~~~DvvIIDTpG~~  195 (504)
T 2j37_W          180 KNENFEIIIVDTSGRH  195 (504)
T ss_dssp             HHTTCCEEEEEECCCC
T ss_pred             HHCCCcEEEEeCCCCc
Confidence            5456689999987554

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.34  E-value=0.0034  Score=61.96  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .+..|+|.|.+|+||||+++.++..+   +.+++.++..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD   89 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   89 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence            44568999999999999999999999   8898888643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.33  E-value=0.0028  Score=54.63  Aligned_cols=32  Identities=25%  Similarity=0.191  Sum_probs=26.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC--CceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG--STFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~--~~~~~  119 (343)
                      .+.-+.|.||+|+||||+++.++..++  ..++.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~   58 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM   58 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence            455688999999999999999999986  34443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.32  E-value=0.0012  Score=55.87  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      -+.|.|++|+||||+++.++..++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3689999999999999999998853

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.31  E-value=0.019  Score=59.18  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      +..++|.||.|+||||+.|.++.
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHHH
Confidence            44688999999999999999874

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=96.30  E-value=0.017  Score=49.06  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=16.8

Q ss_pred             CCceEEEEcCCCchHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKA  108 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~  108 (343)
                      ....+++.+|+|+|||..+-.
T Consensus        56 ~~~~~l~~apTGsGKT~~~~l   76 (228)
T 3iuy_A           56 QGIDLIVVAQTGTGKTLSYLM   76 (228)
T ss_dssp             TTCCEEEECCTTSCHHHHHHH
T ss_pred             CCCCEEEECCCCChHHHHHHH
Confidence            346799999999999986543

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.28  E-value=0.0029  Score=61.23  Aligned_cols=71  Identities=20%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcCC-ccccc-----------cccchHHHHHHHHHHHHHcCCcEEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLPS-SLTSK-----------HYGESEKLVRALFETARARAPAVIF  153 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~~-~l~~~-----------~~~~~~~~i~~~~~~a~~~~p~il~  153 (343)
                      .+.+++|.||+|+||||++++++..+..  ..+.+... ++...           ..+.....+..++..+..+.|.+++
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii  338 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII  338 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence            4457999999999999999999987642  33443221 12110           0000011234455556667899999


Q ss_pred             Ecccc
Q psy7809         154 IDEVD  158 (343)
Q Consensus       154 iDeid  158 (343)
                      ++|+-
T Consensus       339 vgEir  343 (511)
T 2oap_1          339 VGEVR  343 (511)
T ss_dssp             ESCCC
T ss_pred             eCCcC
Confidence            99984

>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*

Probab=96.25  E-value=0.024  Score=54.90  Aligned_cols=34  Identities=29%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ...+++.+|+|+|||......+-..+...+.+.+
T Consensus        40 g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P   73 (523)
T 1oyw_A           40 GRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP   73 (523)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECS
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECC
Confidence            3579999999999998665554444444444443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.23  E-value=0.0019  Score=52.85  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=18.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKA  108 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~  108 (343)
                      .++.-+.|.||+|+||||+++.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHH
Confidence            3455688999999999999995

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.20  E-value=0.0028  Score=52.36  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      +|++|++|+|||++|..++.. +.+.+++....
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            689999999999999999987 87887876644

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.20  E-value=0.016  Score=54.75  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=47.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccccccc--------------------cchHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLTSKHY--------------------GESEKLVRALFET  143 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~~~~~--------------------~~~~~~i~~~~~~  143 (343)
                      ++..+++.|++|+||||++-.+|..+    |..+..+++.-......                    ......+...+..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            45678899999999999999998665    66676666643221100                    0112233555666


Q ss_pred             HHHcCCcEEEEcccccc
Q psy7809         144 ARARAPAVIFIDEVDAF  160 (343)
Q Consensus       144 a~~~~p~il~iDeid~l  160 (343)
                      +.+....+++||-...+
T Consensus       179 ~~~~~~D~VIIDTpG~l  195 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRL  195 (433)
T ss_dssp             HHHTTCSEEEEECCCCC
T ss_pred             HHhCCCCEEEEECCCcc
Confidence            66555689999986433

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.20  E-value=0.0034  Score=54.52  Aligned_cols=30  Identities=17%  Similarity=0.113  Sum_probs=25.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .++.-+-|.||.|+||||+++.++..+|..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            344557899999999999999999988754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.17  E-value=0.022  Score=51.52  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      .++..++|.|++|+||||++..+|..+   +..+..+++
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~  141 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA  141 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            456678899999999999999998765   445555443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.17  E-value=0.0066  Score=54.23  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ..+.-+.|.||+|+||||+++.++..++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3455688999999999999999998875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.17  E-value=0.0036  Score=56.33  Aligned_cols=30  Identities=27%  Similarity=0.547  Sum_probs=25.8

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      +.++..+.|+||+|+|||||++.++..+..
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G  152 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGG  152 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence            366678999999999999999999988743

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.12  E-value=0.023  Score=54.41  Aligned_cols=27  Identities=33%  Similarity=0.333  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+..+.|.|++|+||||+++.++..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            445568899999999999999999765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.12  E-value=0.0041  Score=53.47  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=26.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .+-|.|+||+||||+++.++..++.+.+..
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~   39 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQIST   39 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            467899999999999999999999876654

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=96.11  E-value=0.0038  Score=53.59  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=26.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ..|.|.|++|||||++++.+|..++.+++.
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            457889999999999999999999988765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.11  E-value=0.022  Score=50.97  Aligned_cols=73  Identities=26%  Similarity=0.274  Sum_probs=44.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------c--c---cc-chHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------K--H---YG-ESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------~--~---~~-~~~~~i~~~~~~a  144 (343)
                      ++..+.+.|++|+||||++..+|..+   +..+..+++.-...              -  .   .+ ......+..+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            45567888999999999999998765   44554444321100              0  0   00 1122234556666


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ....+.+|+||+.-.+
T Consensus       177 ~~~~~D~viiDtpp~~  192 (295)
T 1ls1_A          177 RLEARDLILVDTAGRL  192 (295)
T ss_dssp             HHHTCCEEEEECCCCS
T ss_pred             HhCCCCEEEEeCCCCc
Confidence            5567789999998444

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.09  E-value=0.012  Score=52.75  Aligned_cols=72  Identities=21%  Similarity=0.118  Sum_probs=45.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc-------------------ccc-cchHHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS-------------------KHY-GESEKLVRALFETAR  145 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~-------------------~~~-~~~~~~i~~~~~~a~  145 (343)
                      +..+++.|++|+||||++..+|..+   +..+..+++.-...                   ... ......+...+..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5568889999999999999998766   55666555432110                   000 112233445666666


Q ss_pred             HcCCcEEEEcccccc
Q psy7809         146 ARAPAVIFIDEVDAF  160 (343)
Q Consensus       146 ~~~p~il~iDeid~l  160 (343)
                      +....+++||=...+
T Consensus       178 ~~~~D~ViIDTpg~~  192 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRH  192 (297)
T ss_dssp             HTTCSEEEEECCCSC
T ss_pred             hCCCCEEEEeCCCCc
Confidence            566689999986444

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.08  E-value=0.0053  Score=55.18  Aligned_cols=27  Identities=30%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+||||+++.+|..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            455678899999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.99  E-value=0.0079  Score=55.48  Aligned_cols=72  Identities=21%  Similarity=0.257  Sum_probs=44.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEEcC-Cccccc-------ccc-c-------hHHHHHHHHHHHHHcC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNVLP-SSLTSK-------HYG-E-------SEKLVRALFETARARA  148 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v~~-~~l~~~-------~~~-~-------~~~~i~~~~~~a~~~~  148 (343)
                      .+...++|.||+|+||||++++++..+..  ..+.+.. .++...       ++. .       ....+...+..+....
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~  252 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK  252 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence            45568999999999999999999987642  2333321 111100       111 0       1112445566666678


Q ss_pred             CcEEEEcccc
Q psy7809         149 PAVIFIDEVD  158 (343)
Q Consensus       149 p~il~iDeid  158 (343)
                      |..++++|+.
T Consensus       253 pd~~l~~e~r  262 (361)
T 2gza_A          253 PTRILLAELR  262 (361)
T ss_dssp             CSEEEESCCC
T ss_pred             CCEEEEcCch
Confidence            8999999984

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=95.97  E-value=0.022  Score=49.00  Aligned_cols=20  Identities=25%  Similarity=0.187  Sum_probs=16.5

Q ss_pred             CceEEEEcCCCchHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKA  108 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~  108 (343)
                      ...+++.+|+|+|||..+-.
T Consensus        66 g~~~l~~apTGsGKT~~~~l   85 (242)
T 3fe2_A           66 GLDMVGVAQTGSGKTLSYLL   85 (242)
T ss_dssp             TCCEEEEECTTSCHHHHHHH
T ss_pred             CCCEEEECCCcCHHHHHHHH
Confidence            35799999999999987543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.97  E-value=0.042  Score=50.37  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ....+.|.|+||+||||++..++..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            44578899999999999999998775

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.91  E-value=0.003  Score=56.51  Aligned_cols=36  Identities=11%  Similarity=0.162  Sum_probs=24.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCCcc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPSSL  125 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~~l  125 (343)
                      .-|.|.||+|+||||+++.++..++   ..+..++..++
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            4578999999999999999998776   33445554443

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.89  E-value=0.01  Score=56.43  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +..++|+||+|+|||+|+..++...
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhh
Confidence            3468999999999999999887654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.87  E-value=0.0026  Score=54.62  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=16.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHH-HHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVA-SQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia-~~l  113 (343)
                      .++.-+.|.||+|+||||+++.++ ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            344568899999999999999999 765

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.86  E-value=0.0058  Score=55.21  Aligned_cols=28  Identities=18%  Similarity=0.038  Sum_probs=23.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ..+.-+.|.||+|+|||||++.++..+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            4556688999999999999999998763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.011  Score=48.69  Aligned_cols=47  Identities=19%  Similarity=0.139  Sum_probs=29.8

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ...+.+.+.+.+......      .......+++.|++|+|||+|+.+++...
T Consensus        26 ~~~l~~~l~~~~~~~~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           26 ISQWREWIDEKLGGGSGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhhcCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456666666555322111      11344579999999999999999998653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.82  E-value=0.0073  Score=55.62  Aligned_cols=27  Identities=30%  Similarity=0.299  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+||||+++.+|..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            455678899999999999999999876

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.82  E-value=0.0062  Score=59.73  Aligned_cols=36  Identities=22%  Similarity=0.193  Sum_probs=29.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPS  123 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~  123 (343)
                      .+..|+|.|++|+||||++++++..++    .+++.++..
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D  434 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD  434 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence            345688999999999999999999886    677777543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.77  E-value=0.0058  Score=50.02  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+++|.|++|+|||++|.++...
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4578999999999999999999874

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.74  E-value=0.059  Score=55.75  Aligned_cols=21  Identities=19%  Similarity=0.243  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia  110 (343)
                      .-++|.||.|+||||+.|.++
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999995

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.73  E-value=0.0068  Score=54.55  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ++..+.|.||+|+||||+++.+|..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            45578899999999999999999776

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.72  E-value=0.0049  Score=53.31  Aligned_cols=28  Identities=18%  Similarity=0.412  Sum_probs=23.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..+.|.||+|+|||||++.++....
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            5566788999999999999999997653

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.71  E-value=0.0066  Score=58.85  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .+.-|+|.|.||+||||+++.++..++.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~   61 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNW   61 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3456889999999999999999998843

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=95.70  E-value=0.052  Score=49.73  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=31.6

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChH---HHhccC-CCCceEEEEcCCCchHHHHHHHHH
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQ---LFKGIL-RPWRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~---~~~~~~-~~~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      .+|+++.-.+.+.+.+...-.. ...+.   ...... ..+.++++.+|+|+|||..+-..+
T Consensus         5 ~~f~~~~l~~~l~~~l~~~~~~-~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~   65 (395)
T 3pey_A            5 KSFDELGLAPELLKGIYAMKFQ-KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM   65 (395)
T ss_dssp             CSSTTSCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred             cCHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence            4566665556666666542111 11111   111111 234789999999999998765444

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.68  E-value=0.008  Score=51.89  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +.-+.|.|++|+||||+++.++..+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34688999999999999999999984

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.66  E-value=0.0078  Score=54.54  Aligned_cols=27  Identities=15%  Similarity=0.060  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .+.-+.|.||+||||||+++.++..+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344678999999999999999998875

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.64  E-value=0.014  Score=49.66  Aligned_cols=31  Identities=23%  Similarity=0.114  Sum_probs=26.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      .+.-+.|.|++|+||||+++.++..++....
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~   34 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK   34 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence            3456889999999999999999999987443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.61  E-value=0.0056  Score=52.98  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++..+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            556678899999999999999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.60  E-value=0.0086  Score=48.96  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+.|.|++|+||||++..++..+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            467899999999999999998876

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.60  E-value=0.014  Score=49.45  Aligned_cols=32  Identities=9%  Similarity=-0.100  Sum_probs=23.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      .-.+++||.|+|||+.+-..+..+   +..++.+.
T Consensus        29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k   63 (214)
T 2j9r_A           29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK   63 (214)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            345688999999999888887655   55665554

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.57  E-value=0.0088  Score=49.01  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=21.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      -.+|+||.|+|||+++++|+..++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            578999999999999999998775

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.57  E-value=0.011  Score=57.03  Aligned_cols=28  Identities=18%  Similarity=0.006  Sum_probs=24.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .+..++|.|.+||||||+++++|..++.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            3457889999999999999999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.55  E-value=0.032  Score=50.85  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+..+.|.||||+|||||.++++..+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            445568899999999999999998765

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.54  E-value=0.0035  Score=55.01  Aligned_cols=28  Identities=14%  Similarity=0.165  Sum_probs=23.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ..+.-|+|.|++|+||||+++.++..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456688999999999999999999984

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.53  E-value=0.0098  Score=48.88  Aligned_cols=25  Identities=28%  Similarity=0.203  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..-+.|.|++|+||||+++.++..+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            3468899999999999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.51  E-value=0.005  Score=52.80  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..+.|.||.|+|||||++.++..+.
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4555688999999999999999997653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.49  E-value=0.012  Score=50.44  Aligned_cols=26  Identities=23%  Similarity=0.135  Sum_probs=19.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+.-|.|.|++|+||||+++.++..+
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44568889999999999999999887

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.47  E-value=0.0066  Score=59.17  Aligned_cols=39  Identities=23%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCCcc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPSSL  125 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~~l  125 (343)
                      ..+..+.|.|++|+|||||+++++..++    ..+..++...+
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            4556789999999999999999999885    34445655443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.45  E-value=0.01  Score=53.42  Aligned_cols=27  Identities=19%  Similarity=0.097  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .+.-+.|.||+|+||||+++.++..++
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445678999999999999999999876

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.43  E-value=0.011  Score=55.73  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=19.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ...-.++.|+||||||+++..++.
T Consensus       160 ~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          160 SAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             cccEEEEEcCCCCCHHHHHHHHhc
Confidence            334578999999999999988874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.43  E-value=0.0073  Score=49.49  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .+.|.|++|+|||||++.++..+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            578999999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.41  E-value=0.0071  Score=53.18  Aligned_cols=28  Identities=21%  Similarity=0.362  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..+.|.||.|+|||||++.++..+.
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4556788999999999999999997653

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.40  E-value=0.077  Score=54.02  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.||.|+||||+.|.++..
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            45889999999999999999854

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.40  E-value=0.0071  Score=52.53  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++..+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            556678899999999999999998754

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.37  E-value=0.0097  Score=50.43  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      ...|-|+|..||||||+++.++. +|.+++..+
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD   40 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD   40 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence            35688999999999999999997 898877654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.36  E-value=0.0084  Score=55.12  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|||||||.+.++...
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            455568899999999999999999754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.35  E-value=0.0088  Score=51.85  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+ ..+.|.||.|+|||||++.++..+
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            45 678899999999999999999765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.34  E-value=0.012  Score=50.10  Aligned_cols=32  Identities=22%  Similarity=0.124  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC---CceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG---STFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v  120 (343)
                      +.-|.|.|++|+||||+++.++..+.   .+++..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            34578889999999999999998874   444444

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.33  E-value=0.0094  Score=52.55  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .++..+.|.||.|+|||||++.++..
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            55567889999999999999999975

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.31  E-value=0.0081  Score=52.75  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++..+
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            556678999999999999999998754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.29  E-value=0.0083  Score=53.03  Aligned_cols=27  Identities=30%  Similarity=0.448  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++..+
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            555678899999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.28  E-value=0.0067  Score=51.63  Aligned_cols=28  Identities=29%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++.-+.|.||.|+|||||++.++..+.
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4455688999999999999999987653

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.27  E-value=0.066  Score=45.84  Aligned_cols=32  Identities=13%  Similarity=0.109  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      .-.+++|+.|+|||+.+-..+...   +..++.+.
T Consensus        20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k   54 (234)
T 2orv_A           20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   54 (234)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            446788999999997766665443   44554443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.27  E-value=0.0084  Score=52.74  Aligned_cols=28  Identities=21%  Similarity=0.477  Sum_probs=23.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..+.|.||.|+|||||++.++..+.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            5556788999999999999999997653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.27  E-value=0.062  Score=50.50  Aligned_cols=73  Identities=26%  Similarity=0.283  Sum_probs=44.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc-------------------ccc-chHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK-------------------HYG-ESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~-------------------~~~-~~~~~i~~~~~~a  144 (343)
                      ++..+++.|++|+||||++..+|..+   +..+..+++.-....                   ..+ .........+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            45678888999999999999999776   445555444211100                   000 1122234556655


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      .....++++||=...+
T Consensus       177 ~~~~~DvVIIDTaG~l  192 (425)
T 2ffh_A          177 RLEARDLILVDTAGRL  192 (425)
T ss_dssp             HHTTCSEEEEECCCCS
T ss_pred             HHCCCCEEEEcCCCcc
Confidence            5455679999866443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.24  E-value=0.0088  Score=52.15  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .++..+.|.||.|+|||||++.++..
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45566889999999999999999975

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=95.24  E-value=0.054  Score=53.10  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ...+++++|+|+|||.++-.++..+
T Consensus       198 ~~~~ll~~~TGsGKT~~~~~~~~~l  222 (590)
T 3h1t_A          198 KKRSLITMATGTGKTVVAFQISWKL  222 (590)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCChHHHHHHHHHHH
Confidence            3578999999999999987777654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.23  E-value=0.0075  Score=52.55  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++..+
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455678899999999999999998765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.22  E-value=0.061  Score=49.02  Aligned_cols=27  Identities=22%  Similarity=0.261  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .....+.|.|++|+||||++..++..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            445678899999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.21  E-value=0.0076  Score=52.82  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455568899999999999999998765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.20  E-value=0.0077  Score=51.81  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455678899999999999999999765

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=95.20  E-value=0.028  Score=56.49  Aligned_cols=22  Identities=41%  Similarity=0.555  Sum_probs=18.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAV  109 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~i  109 (343)
                      ...++++.||+|+|||+.+-..
T Consensus        39 ~~~~~lv~apTGsGKT~~~~l~   60 (702)
T 2p6r_A           39 SGKNLLLAMPTAAGKTLLAEMA   60 (702)
T ss_dssp             TCSCEEEECSSHHHHHHHHHHH
T ss_pred             CCCcEEEEcCCccHHHHHHHHH
Confidence            4578999999999999988543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.19  E-value=0.0097  Score=54.56  Aligned_cols=27  Identities=33%  Similarity=0.602  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|||||||.+.+|...
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            455668899999999999999999754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.17  E-value=0.0094  Score=52.20  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            455678899999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.17  E-value=0.0078  Score=53.32  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||.|+|||||++.++..+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            455568899999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.17  E-value=0.008  Score=52.10  Aligned_cols=27  Identities=30%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455568899999999999999998765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.16  E-value=0.011  Score=54.38  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|||||||.+.++...
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            455568899999999999999999754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.16  E-value=0.011  Score=54.47  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|||||||.+.+|...
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            455568899999999999999999764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.16  E-value=0.012  Score=52.00  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=20.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+.|.||+|+|||||++.++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.15  E-value=0.0096  Score=52.44  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            555678899999999999999998654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.14  E-value=0.011  Score=54.72  Aligned_cols=27  Identities=26%  Similarity=0.476  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|||||||.+.++...
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            455568899999999999999999755

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=95.13  E-value=0.021  Score=56.55  Aligned_cols=38  Identities=29%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+.+++++...+..               ..+++.||||||||+++..++..+
T Consensus       182 n~~Q~~av~~~l~~---------------~~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          182 NHSQVYAVKTVLQR---------------PLSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             CHHHHHHHHHHHTC---------------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcC---------------CCeEEECCCCCCHHHHHHHHHHHH
Confidence            46666666655421               357899999999999888776543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.13  E-value=0.0075  Score=57.66  Aligned_cols=28  Identities=25%  Similarity=0.280  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .+..|+|.|.||+||||+++.++..++.
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3457899999999999999999988753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.10  E-value=0.012  Score=54.50  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+.-+.|.||+|||||||.+.+|...
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            455668899999999999999999754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.08  E-value=0.0085  Score=52.80  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|+|||||++.++..+
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            455668899999999999999998754

>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*

Probab=95.08  E-value=0.075  Score=52.27  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ...+++.+|+|+|||......+-......+.+
T Consensus        59 g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVi   90 (591)
T 2v1x_A           59 GKEVFLVMPTGGGKSLCYQLPALCSDGFTLVI   90 (591)
T ss_dssp             TCCEEEECCTTSCTTHHHHHHHHTSSSEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCcEEEE
Confidence            35799999999999986655544333333333

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.07  E-value=0.0088  Score=52.15  Aligned_cols=28  Identities=32%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..+.|.||.|+|||||++.++..+.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4555688999999999999999987653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.06  E-value=0.01  Score=54.48  Aligned_cols=27  Identities=33%  Similarity=0.535  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|||||||.+.++...
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            445568899999999999999999754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.06  E-value=0.0097  Score=50.38  Aligned_cols=24  Identities=46%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +..+.|.||.|+|||||++.++..
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999999875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.04  E-value=0.015  Score=50.17  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +.-|.|.|++|+||||+++.++..+.
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688899999999999999998773

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.03  E-value=0.017  Score=49.41  Aligned_cols=28  Identities=25%  Similarity=0.141  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .+.-|.|.|++|+||||+++.++..++.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3456788899999999999999987654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.03  E-value=0.097  Score=56.42  Aligned_cols=29  Identities=17%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ++++..+.|+||+|+|||||++.+...+.
T Consensus       441 i~~G~~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          441 VNAGQTVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence            36677899999999999999999998764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.00  E-value=0.014  Score=53.86  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      ...+.|.||+|+|||||++.++..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4568899999999999999999987643

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.00  E-value=0.01  Score=54.52  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||+|||||||.+.+|...
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            455668899999999999999999754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.00  E-value=0.013  Score=48.53  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+.|.|++|+|||+|++.++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.99  E-value=0.013  Score=48.59  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+.|.|++|+|||+|++.++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            35889999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.97  E-value=0.0096  Score=52.85  Aligned_cols=28  Identities=25%  Similarity=0.330  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..+.|.||.|+|||||++.++..+.
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4555688999999999999999997653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.96  E-value=0.0099  Score=51.96  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||.|+|||||++.++..+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455568899999999999999999765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.95  E-value=0.02  Score=48.35  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ...++|.|++|+|||+++..++..+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999998764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.93  E-value=0.029  Score=51.14  Aligned_cols=38  Identities=13%  Similarity=0.002  Sum_probs=29.8

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      ++.++.-++|.|+||+|||+++..+|...   +.++.+++.
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            34666779999999999999999998664   566666654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.93  E-value=0.012  Score=54.52  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|||||||.+.+|...
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            445568899999999999999999754

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=94.90  E-value=0.046  Score=50.89  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=17.3

Q ss_pred             CceEEEEcCCCchHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      ..++++.+|+|+|||..+-..+
T Consensus        36 ~~~~lv~apTGsGKT~~~l~~~   57 (414)
T 3oiy_A           36 GKSFTMVAPTGVGKTTFGMMTA   57 (414)
T ss_dssp             TCCEECCSCSSSSHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHH
Confidence            4589999999999999554443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.87  E-value=0.019  Score=48.27  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ....++|.|++|+|||+|+.+++...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44579999999999999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.82  E-value=0.017  Score=45.64  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=20.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+++.|++|+|||+|+.+++..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.82  E-value=0.015  Score=54.16  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .++.-+.|.||+|||||||++.++..
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            55667889999999999999999964

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.79  E-value=0.012  Score=52.85  Aligned_cols=28  Identities=25%  Similarity=0.468  Sum_probs=24.2

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.++..+.|.||+|+|||||++.++..+
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            3566779999999999999999998765

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.74  E-value=0.021  Score=48.50  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .-|.|.|++|+||||+++.++..+
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            457889999999999999999877

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=94.73  E-value=0.11  Score=48.60  Aligned_cols=33  Identities=33%  Similarity=0.561  Sum_probs=25.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPS  123 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~  123 (343)
                      ++++.+|+|+|||..+-.++...    +..++.+.+.
T Consensus        25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~   61 (494)
T 1wp9_A           25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT   61 (494)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            78999999999999988886654    5566666543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.71  E-value=0.014  Score=52.04  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=23.8

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.++..+.|.||.|+|||||++.++..+
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3556678899999999999999998765

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=94.65  E-value=0.11  Score=47.89  Aligned_cols=56  Identities=13%  Similarity=-0.027  Sum_probs=32.4

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChH---HHhccCCCCceEEEEcCCCchHHHHHHHHH
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQ---LFKGILRPWRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~---~~~~~~~~~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      .+|+++.-.+.+.+.+...-... ..+.   ..... .....+++.+|+|+|||..+-..+
T Consensus        40 ~~f~~~~l~~~~~~~l~~~~~~~-~~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~   98 (414)
T 3eiq_A           40 DSFDDMNLSESLLRGIYAYGFEK-PSAIQQRAILPC-IKGYDVIAQAQSGTGKTATFAISI   98 (414)
T ss_dssp             CCGGGGCCCHHHHHHHHHTTCCS-CCHHHHHHHHHH-HTTCCEEECCCSCSSSHHHHHHHH
T ss_pred             cCHhhCCCCHHHHHHHHHcCCCC-CCHHHHHHhHHH-hCCCCEEEECCCCCcccHHHHHHH
Confidence            45667666667777766532111 1111   11111 234579999999999998754443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.63  E-value=0.015  Score=47.69  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=19.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .++|.|++|+|||+|++.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999975

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.62  E-value=0.021  Score=45.43  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.60  E-value=0.043  Score=46.35  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ....++|.|++|+|||+|+..++....
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            345688899999999999999998753

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=94.59  E-value=0.022  Score=54.20  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=27.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      ..+++.+|+|+|||.++-.++...+..++.+.+.
T Consensus       109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~  142 (472)
T 2fwr_A          109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  142 (472)
T ss_dssp             TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence            3589999999999999988888887776666553

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.58  E-value=0.019  Score=46.07  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ..+.|.|++|+|||+|+++++.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3588999999999999999985

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=94.58  E-value=0.036  Score=56.47  Aligned_cols=38  Identities=29%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          61 LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        61 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+.+++++...+..               ..++|.||||||||+++..++..+
T Consensus       358 n~~Q~~Av~~~l~~---------------~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          358 NHSQVYAVKTVLQR---------------PLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             CHHHHHHHHHHHTS---------------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhccC---------------CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            45666666655421               357899999999999888776543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.54  E-value=0.022  Score=48.72  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=25.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++.-+.|.|+.|+||||+++.++.. +..+...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~   50 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL   50 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence            34456789999999999999999987 4444433

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.54  E-value=0.016  Score=50.86  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +..+.|.||.|+|||||++.++..+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            5568899999999999999999765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.54  E-value=0.021  Score=45.07  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+++.|++|+|||+|+.++...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.54  E-value=0.026  Score=45.03  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .....+++.|++|+|||+|+.++...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34467999999999999999999753

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.52  E-value=0.038  Score=46.57  Aligned_cols=30  Identities=27%  Similarity=0.274  Sum_probs=24.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhC--CceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHG--STFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~--~~~~~v  120 (343)
                      -|.|.|+.|+||||+++.++..+.  ..++..
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~   35 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT   35 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence            467889999999999999999884  444443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.51  E-value=0.023  Score=45.03  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=94.51  E-value=0.23  Score=43.19  Aligned_cols=19  Identities=37%  Similarity=0.459  Sum_probs=16.1

Q ss_pred             ceEEEEcCCCchHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKA  108 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~  108 (343)
                      +.+++.+|+|+|||..+-.
T Consensus        92 ~~~lv~a~TGsGKT~~~~l  110 (262)
T 3ly5_A           92 RDLLAAAKTGSGKTLAFLI  110 (262)
T ss_dssp             CCCEECCCTTSCHHHHHHH
T ss_pred             CcEEEEccCCCCchHHHHH
Confidence            5789999999999987543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.45  E-value=0.024  Score=45.10  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.44  E-value=0.022  Score=52.47  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+-|.||+|+|||||+++++...
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            455678899999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.44  E-value=0.025  Score=44.89  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.40  E-value=0.022  Score=45.73  Aligned_cols=22  Identities=45%  Similarity=0.706  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ..++|.|++|+|||+|++++..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCccHHHHHHHHhc
Confidence            4689999999999999999974

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.37  E-value=0.029  Score=45.14  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .....|++.|++|+|||+|+.++..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456799999999999999999975

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.36  E-value=0.045  Score=45.75  Aligned_cols=30  Identities=23%  Similarity=0.245  Sum_probs=24.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      |.|.|+.|+||||.++.++..+   |.+++...
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            5688999999999999999877   55665554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.024  Score=53.96  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+.-+.|.||.|+|||||+|.++...
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            455678999999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.36  E-value=0.026  Score=44.99  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+++.|++|+|||+|++++....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.35  E-value=0.026  Score=45.45  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999854

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.32  E-value=0.032  Score=44.37  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .-.+|+||.|+|||++..+++-.+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            346899999999999999998765

>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}

Probab=94.31  E-value=0.29  Score=46.94  Aligned_cols=33  Identities=18%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh--------CCceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH--------GSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l--------~~~~~~v~~  122 (343)
                      .++++.+|+|+|||..+-..+.+.        +..++.+.+
T Consensus        20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P   60 (555)
T 3tbk_A           20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN   60 (555)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence            578999999999998877665443        445555544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.29  E-value=0.025  Score=45.78  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+.|.|++|+|||+|+++++..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.28  E-value=0.026  Score=45.08  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.28  E-value=0.027  Score=45.42  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+++.|++|+|||+|+..+...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.27  E-value=0.027  Score=44.91  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999999753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.21  E-value=0.029  Score=44.50  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|++++...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.21  E-value=0.026  Score=45.06  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.6

Q ss_pred             eEEEEcCCCchHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia  110 (343)
                      .+++.|++|+|||+|+.++.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999996

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.17  E-value=0.026  Score=46.03  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|++|+|||+|+++++..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.17  E-value=0.029  Score=44.54  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+++.|++|+|||+|+.++...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=94.16  E-value=0.088  Score=53.30  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.||.|+||||+.|.++..
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhh
Confidence            45889999999999999999854

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.16  E-value=0.029  Score=44.65  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999863

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=94.14  E-value=0.14  Score=53.54  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      +..++|.||.|+||||+.|.++
T Consensus       789 g~i~~ItGpNgsGKSTlLr~iG  810 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQAG  810 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHH
Confidence            3568899999999999999994

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.09  E-value=0.028  Score=44.82  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ..+++.|++|+|||+|+.++..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999999985

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.09  E-value=0.025  Score=44.98  Aligned_cols=21  Identities=43%  Similarity=0.833  Sum_probs=18.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .++|.|++|+|||+|++++..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            589999999999999999863

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.08  E-value=0.031  Score=45.54  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999863

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=94.08  E-value=0.051  Score=55.42  Aligned_cols=21  Identities=43%  Similarity=0.703  Sum_probs=17.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .+++.||||||||+++..+..
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~  397 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVY  397 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999998776654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.06  E-value=0.014  Score=48.77  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=21.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .....+.|.|++|+|||||+++++..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34456899999999999999998743

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.04  E-value=0.054  Score=50.25  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=27.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      ...++++.||+|+|||++++.++..+   +..++.++.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~   71 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP   71 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            45689999999999999999997654   455555543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.04  E-value=0.048  Score=51.59  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      ..+.-+.|.||+|+|||||++.++......
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            345568899999999999999999987543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.01  E-value=0.03  Score=45.02  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999854

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.99  E-value=0.03  Score=45.66  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|++.+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=93.98  E-value=0.057  Score=48.71  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .-++|.|+.|+||||+++.++...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999999754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.97  E-value=0.03  Score=45.07  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.96  E-value=0.035  Score=44.62  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+++.|++|+|||+|+.++....
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            469999999999999999998643

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.94  E-value=0.043  Score=49.33  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTF  117 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~  117 (343)
                      .+.+++|.|++|+|||++|.++... |..+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~l  171 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRL  171 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence            4578999999999999999999875 4433

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.93  E-value=0.033  Score=45.54  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|++.|++|+|||+|+.+++..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.92  E-value=0.033  Score=45.72  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.90  E-value=0.032  Score=44.96  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999743

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=93.90  E-value=0.45  Score=50.26  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      ....+|++||+|+|||.++-..+...   +...+++.+
T Consensus       198 ~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P  235 (1108)
T 3l9o_A          198 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP  235 (1108)
T ss_dssp             TTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence            34689999999999999876554433   444444433

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.89  E-value=0.036  Score=45.43  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ....+++.|++|+|||+|+.++...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457999999999999999999753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.89  E-value=0.04  Score=45.24  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...|+|.|++|+|||+|+.++...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.88  E-value=0.034  Score=45.19  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|++|+|||+|+.++...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.85  E-value=0.033  Score=45.24  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|++|+|||+|+.++...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.81  E-value=0.038  Score=44.74  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.+++..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            46999999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.80  E-value=0.039  Score=45.95  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ....|+|.|++|+|||+|+.++...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457999999999999999999854

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.80  E-value=0.036  Score=44.77  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.77  E-value=0.038  Score=45.49  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+++.|++|+|||+|++++...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999863

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.75  E-value=0.087  Score=45.90  Aligned_cols=22  Identities=41%  Similarity=0.591  Sum_probs=19.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+.|.|+||+|||+|..++...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5889999999999999999754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.74  E-value=0.033  Score=44.89  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ..|++.|++|+|||+|+.++..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999964

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.74  E-value=0.049  Score=49.81  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=25.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      ..+.-+.|.||+|+|||||++.++......
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            345568899999999999999999987654

>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*

Probab=93.73  E-value=0.26  Score=47.42  Aligned_cols=33  Identities=21%  Similarity=0.480  Sum_probs=24.1

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh--------CCceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH--------GSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l--------~~~~~~v~~  122 (343)
                      .++++.+|+|+|||..+-..+...        +...+.+.+
T Consensus        23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P   63 (556)
T 4a2p_A           23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT   63 (556)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred             CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence            468999999999999877665443        445555544

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=93.69  E-value=0.08  Score=49.86  Aligned_cols=17  Identities=35%  Similarity=0.276  Sum_probs=15.5

Q ss_pred             ceEEEEcCCCchHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLA  106 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la  106 (343)
                      ..+++.||+|+|||.++
T Consensus         3 ~~~lv~a~TGsGKT~~~   19 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRV   19 (431)
T ss_dssp             CEEEEECCTTSCTTTTH
T ss_pred             CEEEEEcCCCCCHHHHH
Confidence            57999999999999976

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.69  E-value=0.04  Score=44.61  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      ....+++.|++|+|||+|+.++.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999999886

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.69  E-value=0.042  Score=44.31  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...++|.|++|+|||+|+.++...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            347999999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.69  E-value=0.041  Score=44.57  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=93.69  E-value=0.039  Score=53.72  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=28.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC---CceEEEcCC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG---STFFNVLPS  123 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v~~~  123 (343)
                      +..++|.|++|+||||+++.++..++   .++..++..
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D  409 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD  409 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence            45688999999999999999998774   456666543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.68  E-value=0.041  Score=44.52  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+.++...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999853

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.67  E-value=0.038  Score=45.23  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|++|+|||+|+..+...
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999988764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.65  E-value=0.049  Score=43.97  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+++.|++|+|||+|+.++...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.64  E-value=0.034  Score=45.27  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+++.|++|+|||+|+.++...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5889999999999999999753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.63  E-value=0.033  Score=44.95  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+++.|++|+|||+|+..+...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}

Probab=93.62  E-value=0.17  Score=52.82  Aligned_cols=39  Identities=28%  Similarity=0.426  Sum_probs=28.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CC--ceEEEcCCcccc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GS--TFFNVLPSSLTS  127 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~--~~~~v~~~~l~~  127 (343)
                      ..++||.++.|+|||..+-+++..+   +.  +++.+.+..+..
T Consensus       170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~  213 (968)
T 3dmq_A          170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQH  213 (968)
T ss_dssp             SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHH
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHH
Confidence            4678999999999999998887654   32  566666555543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.62  E-value=0.04  Score=45.04  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=93.61  E-value=0.04  Score=45.15  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+..+...
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            36999999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.61  E-value=0.047  Score=44.98  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...|+|.|++|+|||+|+..+...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.59  E-value=0.038  Score=45.23  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..|+|.|++|+|||+|++.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999998887654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.58  E-value=0.087  Score=45.58  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh--CCceEEEc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH--GSTFFNVL  121 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l--~~~~~~v~  121 (343)
                      ....+++.|.+|+||||++..+|..+  +..+..++
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd   48 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN   48 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence            34568889999999999999999776  45555554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.57  E-value=0.2  Score=54.07  Aligned_cols=28  Identities=25%  Similarity=0.474  Sum_probs=24.4

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ++++..+-|+||+|+|||||++.+.+-+
T Consensus      1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence            4667789999999999999999998755

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.54  E-value=0.043  Score=45.03  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..|+|.|++|+|||+|+..+....
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            469999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.51  E-value=0.036  Score=52.07  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CCCce--EEEEcCCCchHHHHHHHHHHH
Q psy7809          87 RPWRG--ILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        87 ~~~~~--vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .++..  +.|.||+|+|||||+++++..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            34444  889999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.49  E-value=0.043  Score=45.35  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.47  E-value=0.044  Score=44.89  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=93.45  E-value=0.064  Score=50.23  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+.|.||+|+|||||.++++..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCC
Confidence            346789999999999999999873

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=93.45  E-value=0.055  Score=45.40  Aligned_cols=26  Identities=27%  Similarity=0.241  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .-.+|+||.|+|||++..+|...++.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            45789999999999999999877654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=93.44  E-value=0.045  Score=44.98  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=93.44  E-value=0.045  Score=44.80  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=93.43  E-value=0.041  Score=47.62  Aligned_cols=27  Identities=26%  Similarity=0.207  Sum_probs=23.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTF  117 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~  117 (343)
                      -+.|+|++|||||++++.+...+|.++
T Consensus         3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~   29 (241)
T 1dek_A            3 LIFLSGVKRSGKDTTADFIMSNYSAVK   29 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence            367999999999999999998888654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.42  E-value=0.042  Score=49.37  Aligned_cols=31  Identities=29%  Similarity=0.338  Sum_probs=24.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      -.+.++||.|++|+|||++|..+.. -|..++
T Consensus       145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv  175 (312)
T 1knx_A          145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFV  175 (312)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence            3457899999999999999988764 354433

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=93.41  E-value=0.047  Score=44.38  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ....+++.|++|+|||+|+.++...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4467999999999999999999753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=93.41  E-value=0.02  Score=49.19  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=19.7

Q ss_pred             EEEcCCCchHHHHHHHHHHHhC
Q psy7809          93 LLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        93 ll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .|.||+|+|||||+++++..+.
T Consensus        31 ~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           31 TLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEECCCCCCHHHHHHHHhcccc
Confidence            5789999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.41  E-value=0.047  Score=50.14  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +..+.|.||+|+|||||+++++....
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            34688999999999999999996543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=93.40  E-value=0.048  Score=44.56  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999999754

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=93.40  E-value=0.47  Score=45.90  Aligned_cols=20  Identities=25%  Similarity=0.240  Sum_probs=16.7

Q ss_pred             CCceEEEEcCCCchHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAK  107 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~  107 (343)
                      ....+++.+|+|+|||..+-
T Consensus       110 ~~~~~lv~apTGsGKTl~~~  129 (563)
T 3i5x_A          110 EDHDVIARAKTGTGKTFAFL  129 (563)
T ss_dssp             SSEEEEEECCTTSCHHHHHH
T ss_pred             CCCeEEEECCCCCCccHHHH
Confidence            46789999999999998533

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.40  E-value=0.044  Score=44.30  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999853

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=93.40  E-value=0.046  Score=44.83  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|++|+|||+|+.++...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36999999999999999999854

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.40  E-value=0.054  Score=44.48  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ....|+|.|++|+|||+|+.++...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3457999999999999999999863

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.39  E-value=0.05  Score=44.39  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|++|+|||+|+.++...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.38  E-value=0.051  Score=44.90  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...|+|.|++|+|||+|+.++...
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            457999999999999999999754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=93.37  E-value=0.046  Score=45.28  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ...|+|.|++|+|||+|+.++....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3579999999999999999998653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=93.36  E-value=0.047  Score=44.85  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|++|+|||+|+.++...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999865

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=93.35  E-value=0.046  Score=47.93  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+.|.|++|+|||+|..++...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.34  E-value=0.048  Score=44.59  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.30  E-value=0.046  Score=45.39  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.29  E-value=0.05  Score=44.33  Aligned_cols=24  Identities=46%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...+++.|++|+|||+|++++...
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.29  E-value=0.057  Score=49.39  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ...+.|.|+||+|||||..+++..+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.28  E-value=0.054  Score=44.21  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ....|++.|++|+|||+|+.++..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999984

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=93.27  E-value=0.047  Score=45.68  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|++.++..
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=93.25  E-value=0.049  Score=45.02  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|+.++...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=93.24  E-value=0.048  Score=45.19  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...|+|.|++|+|||+|+.++...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            346999999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.23  E-value=0.048  Score=45.49  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..|+|.|++|+|||+|++++...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=93.13  E-value=0.09  Score=44.29  Aligned_cols=54  Identities=17%  Similarity=-0.022  Sum_probs=32.1

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHh--ccCCCCceEEEEcCCCchHHHHH
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~--~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      ..+|+++.-.+.+.+.+...-.. ...+....  ..+....++++.+|+|+|||..+
T Consensus        13 ~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~   68 (224)
T 1qde_A           13 VYKFDDMELDENLLRGVFGYGFE-EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF   68 (224)
T ss_dssp             CCCGGGGTCCHHHHHHHHHHTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred             cCChhhcCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence            35677776667777777654221 11111111  11123467999999999999873

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.12  E-value=0.057  Score=45.08  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ...++|.|++|+|||+|+.++...
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	5e-72
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	2e-71
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	6e-56
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	4e-45
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	2e-31
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	8e-24
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	9e-24
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	2e-19
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	4e-16
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	3e-10
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	2e-09
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	2e-08
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	1e-07
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	2e-07
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	3e-07
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	1e-06
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	6e-06
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	2e-05
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	7e-05
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	2e-04
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	3e-04
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	9e-04
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	0.001
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.002
d1r6bx2	268	c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A	0.002
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.002
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.002
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.003
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	0.004

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  222 bits (566), Expect = 5e-72
 Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 20/238 (8%)

Query: 46  IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTL 104
           + +      + D+AG D  K+   E +   +  P  F+ +  +  +G+L+ GPPGTGKTL
Sbjct: 2   LTEDQIKTTFADVAGCDEAKEEVAELVEYLR-EPSRFQKLGGKIPKGVLMVGPPGTGKTL 60

Query: 105 LAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS-- 162
           LAKA+A +    FF +  S       G     VR +FE A+  AP +IFIDE+DA     
Sbjct: 61  LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120

Query: 163 ---GSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRI 217
                  H+   +   ++L  MDG     G++G++V+AATN P  LD AL R  RF++++
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177

Query: 218 SP--------IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
                      QI+ + +  +   P++D A +++   G+SG+D+ +L  E  L AAR 
Sbjct: 178 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score =  220 bits (562), Expect = 2e-71
 Identities = 82/231 (35%), Positives = 118/231 (51%), Gaps = 20/231 (8%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V + D+AG +  K+  KE +   K  P  F  +  R  +G+LL GPPG GKT LA+AVA 
Sbjct: 6   VTFKDVAGAEEAKEELKEIVEFLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 64

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS-----GSRE 166
           +    F     S       G     VR LFETA+  AP ++FIDE+DA            
Sbjct: 65  EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 124

Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRIS---P-- 219
           ++   +   +LL  MDG      D  ++V+AATN P  LD AL R  RF+++I+   P  
Sbjct: 125 NDEREQTLNQLLVEMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 181

Query: 220 ---IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
               QI+ +         +VD+A L+K+  G+ G+D+ +L  E  L+AARE
Sbjct: 182 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 232

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  181 bits (459), Expect = 6e-56
 Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 19/236 (8%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           V W+DI GL++VK+  +E +  P   P  F    + P +G+L +GPPG GKTLLAKA+A+
Sbjct: 4   VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 63

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS-----GSRE 166
           +  + F ++    L +  +GESE  VR +F+ AR  AP V+F DE+D+            
Sbjct: 64  ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 123

Query: 167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRISP----- 219
             A  RV  ++L+ MDG+   S  K V ++ ATN P  +D A+ R  R ++ I       
Sbjct: 124 GGAADRVINQILTEMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180

Query: 220 ---IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNA 272
              + I+   L +     +VD+  L+K   G+SG+D+ ++CQ    +A RE I++ 
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 236

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  153 bits (386), Expect = 4e-45
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 36/281 (12%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVAS 111
           VG+DD+ G        KE + LP   P LFK I ++P RGILL+GPPGTGKTL+A+AVA+
Sbjct: 1   VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60

Query: 112 QHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCS--GSREHEA 169
           + G+ FF +    + SK  GESE  +R  FE A   APA+IFIDE+DA          E 
Sbjct: 61  ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 120

Query: 170 TRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKR--RFEKRISP-------- 219
            RR+  +LL+ MDG+        V+V+AATN P  +D AL+R  RF++ +          
Sbjct: 121 ERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177

Query: 220 IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQNAGFTGVNS 279
           ++I+ +    ++   +VD+  ++ +  G+ G+D+  LC E  L A R+            
Sbjct: 178 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK------------ 225

Query: 280 KPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEK 320
                 + I  + +    +V     + + +    F  A  +
Sbjct: 226 ----KMDLIDLEDETIDAEVM----NSLAVTMDDFRWALSQ 258

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score =  118 bits (296), Expect = 2e-31
 Identities = 41/246 (16%), Positives = 79/246 (32%), Gaps = 29/246 (11%)

Query: 37  ELTALVEKDIVQTDTGVGWDD--IAGLDNVKQIFKETLL--LPKLMPQLF-KGILRPWRG 91
            + A  EK +   D  V         +    + +   L   L    P +   G  R   G
Sbjct: 65  RIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASG 124

Query: 92  ILLF-GPPGTGKTLLAKAVASQHGS--TFFNVLPSSLTSKHYGESEKLVRALFETARARA 148
           +++  G   +GKT L  A+    G    +  V      S +  +    V  +        
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIAR--AMLQ 182

Query: 149 PAVIFIDEVDAFCSGSR---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDL 205
             VI ID +      +          R   +LLS +  +   +  +G +V+A+ N P   
Sbjct: 183 HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAM---AASRGCVVIASLN-PTSN 238

Query: 206 DEAL---KRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGY--SGSDIRDLCQEI 260
           D+ +    +   +  S   +       I  D + +   L++   G       ++    E 
Sbjct: 239 DDKIVELVKEASRSNSTSLV-------ISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEH 291

Query: 261 ILIAAR 266
            ++   
Sbjct: 292 SVLTIH 297

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 98.2 bits (244), Expect = 8e-24
 Identities = 37/255 (14%), Positives = 66/255 (25%), Gaps = 53/255 (20%)

Query: 39  TALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPP 98
            +    DI +   GV W     L  +  +  + L        +   I +  R  L  GP 
Sbjct: 112 GSTGSADIEEWMAGVAWLH-CLLPKMDSVVYDFL------KCMVYNIPKK-RYWLFKGPI 163

Query: 99  GTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY-GESEKLVRALFETARA------RAPAV 151
            +GKT LA A+    G    NV           G +      +FE  +         P+ 
Sbjct: 164 DSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSG 223

Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG---------VLVLAATNHP 202
             I+ +D                  L  ++DG    + +K             +   N  
Sbjct: 224 QGINNLDN-----------------LRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN-- 264

Query: 203 WDLDEALKRRFEKRISPIQIIGLCLGEIRK---------DPNVDVATLSKQLIGYSGSDI 253
            +       +              L    +              +A L   +     ++ 
Sbjct: 265 -EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEF 323

Query: 254 RDLCQEIILIAAREV 268
               Q  I+     +
Sbjct: 324 AQSIQSRIVEWKERL 338

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 95.8 bits (237), Expect = 9e-24
 Identities = 37/240 (15%), Positives = 83/240 (34%), Gaps = 25/240 (10%)

Query: 37  ELTALVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFG 96
           +  + +   I+       W D      V ++  +  LL +   Q       P   +LL G
Sbjct: 2   DYASYIMNGII------KWGD-----PVTRVLDDGELLVQ---QTKNSDRTPLVSVLLEG 47

Query: 97  PPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESE-KLVRALFETARARAPAVIFID 155
           PP +GKT LA  +A +    F  +            ++ + ++ +F+ A     + + +D
Sbjct: 48  PPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD 107

Query: 156 EVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA-LKRRFE 214
           +++                      +         + +L++  T+    L E  +   F 
Sbjct: 108 DIERLL-DYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS 166

Query: 215 KRI------SPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGS-DIRDLCQEIILIAARE 267
             I      +  Q++   L  +    + +  T+++Q+ G      I+ L   I +    +
Sbjct: 167 TTIHVPNIATGEQLLEA-LELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 225

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 84.6 bits (208), Expect = 2e-19
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 34/238 (14%)

Query: 53  VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ 112
           V + D    + +    +E L+  K   +            LL G PG+GKT L  A+  +
Sbjct: 4   VNFTDKQFENRLNDNLEE-LIQGKKAVE-------SPTAFLLGGQPGSGKTSLRSAIFEE 55

Query: 113 HGSTFFNVLPSSLTSKH---YGESEKLVRALFETARARAPAVIFIDEVDAFCSG-SREHE 168
                  +   +   +H       +   + + +     +  +           G +   E
Sbjct: 56  TQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 115

Query: 169 ATRRVRCELLSHMDG---------VGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISP 219
            T R     +              +   +  K    L        +          R +P
Sbjct: 116 GTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPM--TARATP 173

Query: 220 IQIIGLCLGEIRKD----------PNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE 267
            Q   + +  +  +           ++ +    + +  YS  +   +  +  L     
Sbjct: 174 KQAHDIVVKNLPTNLETLHKTGLFSDIRLY-NREGVKLYSSLETPSISPKETLEKELN 230

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 75.6 bits (185), Expect = 4e-16
 Identities = 54/237 (22%), Positives = 84/237 (35%), Gaps = 21/237 (8%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFKGI--LRPWRGILLFGPPGTGKTLLAKAVASQH 113
             I G  + K+     L       QL + +      + IL+ GP G GKT +A+ +A   
Sbjct: 14  QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73

Query: 114 GSTFFNVLPSSLTSKHYGESEKLVRALFETARA-------RAPAVIFIDEVDAFCSGSRE 166
            + F  V  +  T   Y   E        T  A           ++FIDE+D  C     
Sbjct: 74  NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY 133

Query: 167 HEA---TRRVRCELLSHMDG--VGTGSGD---KGVLVLAA----TNHPWDLDEALKRRFE 214
             A      V+ +LL  ++G  V T  G      +L +A+       P DL   L+ R  
Sbjct: 134 SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP 193

Query: 215 KRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQN 271
            R+    +       I  +P+  +    K L+   G +I      +  IA      N
Sbjct: 194 IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 250

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 57.7 bits (138), Expect = 3e-10
 Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 26/225 (11%)

Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
            D+  G + +KQ  +  L   K           P   +LLFGPPG GKT LA  +A + G
Sbjct: 8   LDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELG 60

Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEA-TRRV 173
                   S    +  G+   ++    E        ++FIDE+      + EH       
Sbjct: 61  VNLRVT--SGPAIEKPGDLAAILANSLEEGD-----ILFIDEIHRLSRQAEEHLYPAMED 113

Query: 174 RCELLSHMDGVGTGSG---DKGVLVLAATNHPWDLDEALKR--RFEKRISPIQIIGLCLG 228
               +    G    +         ++ AT  P  +   L       + +       L  G
Sbjct: 114 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQG 173

Query: 229 EIRKDPNVDVATLSKQL---IGYSGSDIRD---LCQEIILIAARE 267
            +R    + V    +        S   +R    L + +   A   
Sbjct: 174 VMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVA 218

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 29/226 (12%)

Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
            D+  G +NVK+     L   K+              +LL GPPG GKT LA  +AS+  
Sbjct: 8   LDEFIGQENVKKKLSLALEAAKMRG-------EVLDHVLLAGPPGLGKTTLAHIIASELQ 60

Query: 115 STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVR 174
           +         +TS      +  + A+  +       V+FIDE+    + + E      + 
Sbjct: 61  T------NIHVTSGPVLVKQGDMAAILTSLERG--DVLFIDEIHRL-NKAVEELLYSAIE 111

Query: 175 CELLSHMDGVGTGS------GDKGVLVLAATNHPWDLDEALKRR---FEKRISPIQIIGL 225
              +  M G G  +           LV A T           R     E     ++ +  
Sbjct: 112 DFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKE 171

Query: 226 CLGEIRKDPNVDVATLSKQLI-GYSGSDIRD---LCQEIILIAARE 267
            +       +V++   + ++I   S    R    L + +  +    
Sbjct: 172 IIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 217

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 18/223 (8%), Positives = 45/223 (20%), Gaps = 35/223 (15%)

Query: 80  QLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLPSSLTSKHYGESEK 135
              +     +    L G PGTGKT+  + +         + F  +      +      E 
Sbjct: 34  NWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 93

Query: 136 LVRALFETARARAPAVIFIDEVDAFCS--------GSREHEATRRVRCELLSHMDGVGTG 187
                    R       F+  +                +              +      
Sbjct: 94  ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK 153

Query: 188 SGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLC----LGEIRK----------- 232
            G   + ++   ++   L+             +          + +I             
Sbjct: 154 LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGS 213

Query: 233 DPNVDVATLSKQLIGYSGSDI--------RDLCQEIILIAARE 267
                +  ++      +  D          D+       A + 
Sbjct: 214 YSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN 256

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 36/228 (15%), Positives = 67/228 (29%), Gaps = 22/228 (9%)

Query: 89  WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLV----------- 137
            + IL+ GP G GKT +A+ +A    + F  V  +  T   Y   E              
Sbjct: 49  PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 108

Query: 138 ---RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV------GTGS 188
              +      RARA  V     +DA    ++             S           G   
Sbjct: 109 LVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLD 168

Query: 189 GDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGY 248
             +  + ++A         A     E       +      +  K   + +    K LI  
Sbjct: 169 DKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDD 228

Query: 249 SGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSK 296
             + + +   E +   A + ++  G   ++      +    +  D S+
Sbjct: 229 EAAKLIN--PEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSR 274

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 25/258 (9%), Positives = 59/258 (22%), Gaps = 49/258 (18%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115
            ++       +      L   L       +          G  G GKT LAK    +   
Sbjct: 16  PELRVRRGEAEALARIYLNRLLSGAGLSDVNM---IYGSIGRVGIGKTTLAKFTVKRVSE 72

Query: 116 TFFNVLPSSLTSKHYG--------------------------ESEKLVRALFETARARAP 149
                  +   +                               +  +++AL +       
Sbjct: 73  AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132

Query: 150 AV-IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA 208
            + + +DE  +  S  R           +   +      +    +LV +       + E 
Sbjct: 133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREK 192

Query: 209 LKRRFEKRISP-----------IQIIGLCLGEIRKDPNVD------VATLSKQLIGYSGS 251
           + +   +                 I+        +D   +      ++ +  +  G  GS
Sbjct: 193 IPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS 252

Query: 252 --DIRDLCQEIILIAARE 267
                   +    +A   
Sbjct: 253 ARRAIVALKMACEMAEAM 270

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 28/223 (12%), Positives = 55/223 (24%), Gaps = 13/223 (5%)

Query: 55  WDDIAGLDNVKQIFKETL-----LLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAV 109
              + G        K  L               K     +R  +L+GPPG GKT  A  V
Sbjct: 13  LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72

Query: 110 ASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGS----- 164
                  +  +  ++   +        V+   +            +  +           
Sbjct: 73  --AQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 130

Query: 165 REHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRISPIQIIG 224
                +   R  +          S    ++            + +    + R      I 
Sbjct: 131 EVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIK 190

Query: 225 LCLGEIRKDPNVDVA-TLSKQLIGYSGSDIRDLCQEIILIAAR 266
             L  I       +   +  +LI  +  DIR +   +  I+  
Sbjct: 191 SRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT 233

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 17/173 (9%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
           +LL G PG+GK+ +A+A+A+  G    +    S     Y +  ++   L ++ +     +
Sbjct: 7   LLLSGHPGSGKSTIAEALANLPGVPKVHF--HSDDLWGYIKHGRIDPWLPQSHQQNRMIM 64

Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLD---EA 208
               +V           A R  +      +DGV           LA   H   L      
Sbjct: 65  QIAADV-----------AGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAE 113

Query: 209 LKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEII 261
              R   R        L + ++      D+      ++  SG D     Q  I
Sbjct: 114 AIERCLDRGGDSLSDPLVVADLHSQFA-DLGAFEHHVLPVSGKDTDQALQSAI 165

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 13/149 (8%)

Query: 56  DDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS 115
           + ++  + +    K     P+ +P            +LL+GP GTGK     A+      
Sbjct: 11  NALSHNEELTNFLKSLSDQPRDLP-----------HLLLYGPNGTGKKTRCMALLESIFG 59

Query: 116 TFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRC 175
                L   +       + KL   L   +      +   D  +      +E         
Sbjct: 60  PGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 117

Query: 176 ELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
           ++       G     K V++  A +   D
Sbjct: 118 QVDFQDSKDGLAHRYKCVIINEANSLTKD 146

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFET----AR 145
              L+ G   TGK+ + K   ++    +  +       ++Y   +  +  L +      +
Sbjct: 30  PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVK 89

Query: 146 ARAPAVIFIDEVDAFCSGSREHEATRRVRC 175
                +  +  +        E +     + 
Sbjct: 90  RLPSLLKALKNIQGIVIMGNEIKFNWNRKD 119

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 87  RPW--RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESE 134
           RP+  + + + G   +GK++L   +A+   +T           +  G  E
Sbjct: 3   RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE 52

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 37/229 (16%), Positives = 60/229 (26%), Gaps = 53/229 (23%)

Query: 55  WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG 114
           + D+ G ++V       L L ++               L  G  G GKT +A+ +A    
Sbjct: 11  FADVVGQEHVLTALANGLSLGRIHH-----------AYLFSGTRGVGKTSIARLLAKGLN 59

Query: 115 STFFNVLPSSLTSKHYGESEKL------------------VRALFETARARAPA----VI 152
                         +  E E+                    R L +  +         V 
Sbjct: 60  CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 119

Query: 153 FIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRR 212
            IDEV      S            LL  ++        + V  L AT  P  L   +  R
Sbjct: 120 LIDEVHMLSRHSFN---------ALLKTLE-----EPPEHVKFLLATTDPQKLPVTILSR 165

Query: 213 FEKRISP-----IQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDL 256
             +              L      +    +   L + L   +   +RD 
Sbjct: 166 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL-QLLARAAEGSLRDA 213

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 91  GILLFGPPGTGKTLLAKAVAS 111
           G+L+FG  GTGK+   +A+A+
Sbjct: 30  GVLVFGDRGTGKSTAVRALAA 50

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 18/181 (9%), Positives = 51/181 (28%), Gaps = 33/181 (18%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFF---NVLPSSLTSKHYGESEKLVRALFETARARA 148
           IL+ G   +    ++  +            +VL      ++ G  +  +R + +      
Sbjct: 18  ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD--IRTIKDFLNYSP 75

Query: 149 ----PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD 204
                  + + +             T++     L  ++        +  +++  T     
Sbjct: 76  ELYTRKYVIVHDC---------ERMTQQAANAFLKALEEPP-----EYAVIVLNTRRWHY 121

Query: 205 LDEALKRRF----------EKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIR 254
           L   +K R            + +   +I  L       + +   A  + +L     S + 
Sbjct: 122 LLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSGLM 181

Query: 255 D 255
           +
Sbjct: 182 E 182

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
           ILL G PG GKT L K +AS+ G  + NV
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLKYINV 35

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
           R I+L G    GK+ + + + S     +   
Sbjct: 4   RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 34/152 (22%)

Query: 87  RPWRGILLFGPPGTGKTLLAKAVA----------SQHGSTFFNVLPSSLTS--KHYGESE 134
           R     LL G  G GKT +A+ +A               T +++   SL +  K+ G+ E
Sbjct: 37  RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96

Query: 135 KLVRALFETARARAPAVIFIDEVDAFCSGSR----EHEATRRVRCELLSHMDGVGTGSGD 190
           K  +AL +       +++FIDE+            + +A   ++  L             
Sbjct: 97  KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL------------S 144

Query: 191 KGVLVLAATNHPWDL------DEALKRRFEKR 216
            G + +  +    +       D AL RRF+K 
Sbjct: 145 SGKIRVIGSTTYQEFSNIFEKDRALARRFQKI 176

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 32/192 (16%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAV 151
            ++ GP G GK+   K +A+Q  ++ +                     +           
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIE----------------GDIINHMVVGGYRPP 48

Query: 152 IFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP--------- 202
              DE+ A    +        +  +    +D +      + +                  
Sbjct: 49  WESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIIL 108

Query: 203 WDLDEALKRRFEKRISPIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIIL 262
           W   E L RR   R    Q+   CL  + +  +  +    +     S     +L   +  
Sbjct: 109 WTNREELLRRDALRKKDEQMGERCLELVEEFESKGI--DERYFYNTSHLQPTNLNDIV-- 164

Query: 263 IAAREVIQNAGF 274
              + +  N  F
Sbjct: 165 ---KNLKTNPRF 173

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 90  RGILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
           R I L GP G GK+ + + +A Q    F++ 
Sbjct: 3   RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFN 119
           ++  G PG GK+   +      G    N
Sbjct: 17  VVAVGFPGAGKSTFIQEHLVSAGYVHVN 44

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 92  ILLFGPPGTGKTLLAKAVASQHGSTFFNV 120
           ++L GPPG GK   A  +  +  +     
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERFHAAHLAT 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	100.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	100.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.91
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.87
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.86
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.85
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.83
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.8
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.79
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.77
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.71
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.71
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.71
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.7
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.63
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.62
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.59
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.58
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.55
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.54
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.51
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.5
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.49
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.48
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.41
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.41
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.37
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.26
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.92
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.91
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	98.91
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.61
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.25
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.17
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.15
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.08
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.06
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.02
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.99
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.97
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.97
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.93
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.92
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.92
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.89
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.88
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.87
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.86
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.82
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.79
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.78
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.78
d1okkd2	207	GTPase domain of the signal recognition particle r	97.75
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.75
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.74
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.72
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.72
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.7
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.69
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.69
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.69
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.68
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.67
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.64
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.64
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.62
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.6
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.59
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.59
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.56
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.54
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.54
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.51
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.5
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.49
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.49
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.31
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.25
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.17
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.16
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.16
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.14
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.11
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.11
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	97.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.03
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.03
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.99
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.97
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.96
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.95
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.86
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.85
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.81
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.73
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.68
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.66
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.62
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.59
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.59
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.58
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.55
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.51
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.4
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.37
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.35
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	96.29
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.26
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.23
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.2
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.14
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.12
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.1
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.03
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.02
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.0
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	95.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.92
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.89
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.86
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.84
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.81
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.77
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.64
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.61
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.6
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.58
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.54
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.54
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.53
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.51
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.5
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.5
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.5
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.41
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.4
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.37
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.33
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.31
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.29
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.27
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.23
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.22
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.18
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.18
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.17
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.15
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.12
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.08
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	95.05
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.04
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.89
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.84
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	94.82
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.81
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.78
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.77
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.77
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.76
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.73
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.73
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.71
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.68
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.64
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.58
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.57
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.57
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.56
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.55
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.5
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.44
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.44
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.37
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.37
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.35
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.33
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.33
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.31
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.3
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.2
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.18
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.16
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.14
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.14
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.12
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.11
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.11
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.06
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.05
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.01
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.99
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.92
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.9
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.8
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.78
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.77
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.74
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.68
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.67
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.66
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	93.64
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.63
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.56
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.55
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.5
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.43
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.42
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.4
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.3
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.23
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.11
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.1
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.06
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.94
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.76
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.72
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.69
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.67
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.64
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.6
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.47
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.42
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.39
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	92.29
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.25
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.1
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.06
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.86
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.79
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.56
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.52
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.42
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.34
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.1
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.4
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.1
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.03
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	89.98
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	89.78
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.29
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	88.91
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	88.47
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	87.93
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	87.61
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	87.46
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.15
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	86.41
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.42
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	85.3
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.13
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	84.88
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.85
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	84.53
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.56
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	83.32
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.31
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	82.99
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	82.77
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.03
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	81.79
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.02
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	80.59
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	80.29
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	80.19

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-42  Score=304.63  Aligned_cols=235  Identities=34%  Similarity=0.547  Sum_probs=204.1

Q ss_pred             cccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          47 VQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        47 ~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      .+..++++|+||+|+++++++|.+.+.. +.+++.+.. +...++++|||||||||||++|+++|++++.+++.++++++
T Consensus         3 ~~~~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l   81 (256)
T d1lv7a_           3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF   81 (256)
T ss_dssp             EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred             CCCCCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHh
Confidence            3567889999999999999999998754 556666554 35788999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecC
Q psy7809         126 TSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATN  200 (343)
Q Consensus       126 ~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn  200 (343)
                      .+.|+|++++.++.+|..|+.+.||||||||+|.++....     ......++.+.|+..++++...   .+++||+|||
T Consensus        82 ~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~---~~v~vIatTn  158 (256)
T d1lv7a_          82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN---EGIIVIAATN  158 (256)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS---SCEEEEEEES
T ss_pred             hhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC---CCEEEEEeCC
Confidence            9999999999999999999999999999999999986422     2234567889999999987554   3899999999


Q ss_pred             CCCCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         201 HPWDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       201 ~~~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .|+.||++++|  ||++.+.        |.+||+.++.+..+..++++..+|+.|+||+++||..+|++|...|+++...
T Consensus       159 ~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~~~~  238 (256)
T d1lv7a_         159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR  238 (256)
T ss_dssp             CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999998  9999887        9999999999998888999999999999999999999999998888754321


Q ss_pred             hccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhcC
Q psy7809         271 NAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKCR  322 (343)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~~  322 (343)
                                                    .       |+.+||++|++++.
T Consensus       239 ------------------------------~-------i~~~d~~~Al~rv~  253 (256)
T d1lv7a_         239 ------------------------------V-------VSMVEFEKAKDKIM  253 (256)
T ss_dssp             ------------------------------S-------BCHHHHHHHHHHHT
T ss_pred             ------------------------------c-------cCHHHHHHHHHHHh
Confidence                                          2       89999999998763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.2e-42  Score=302.25  Aligned_cols=215  Identities=37%  Similarity=0.541  Sum_probs=190.2

Q ss_pred             cCCCCCCCcccccHHHHHHHHHHHhccccChHHHhc-cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          49 TDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG-ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        49 ~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      ..|.++|+||+|++++|++|.+.+.. +.+++.+.. +...++++||+||||||||++|+++|++++.+++.+++.++.+
T Consensus         2 ~~p~~~~~di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~   80 (247)
T d1ixza_           2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   80 (247)
T ss_dssp             CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCCCcHHHHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            46889999999999999999987754 667776665 3677889999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCC
Q psy7809         128 KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHP  202 (343)
Q Consensus       128 ~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~  202 (343)
                      .|+|++++.++.+|..|..++|+||||||+|.++....     ......++.+.|+..|+++...   .+++||+|||.+
T Consensus        81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~---~~vivi~tTn~~  157 (247)
T d1ixza_          81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD---TAIVVMAATNRP  157 (247)
T ss_dssp             SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT---CCEEEEEEESCG
T ss_pred             ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC---CCEEEEEeCCCc
Confidence            99999999999999999999999999999999986321     2334567889999999987543   489999999999


Q ss_pred             CCCCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy7809         203 WDLDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       203 ~~l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r  267 (343)
                      +.||++++|  ||+..|+        |.+||+.++.......+++++.||+.|+||+++||.++|++|...|+++
T Consensus       158 ~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~  232 (247)
T d1ixza_         158 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE  232 (247)
T ss_dssp             GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence            999999997  9998887        9999999999888888999999999999999999999999999888765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-41  Score=303.14  Aligned_cols=215  Identities=41%  Similarity=0.688  Sum_probs=194.6

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccccc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYG  131 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~  131 (343)
                      ++|+||+|++++|+.|++.+..++.+++.+... ..+++++|||||||||||++++++|++++.+++.+++.++.+.+++
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g   80 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG   80 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence            479999999999999999999999999988864 6788999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHcCCcEEEEcccccccCC--CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHH
Q psy7809         132 ESEKLVRALFETARARAPAVIFIDEVDAFCSG--SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL  209 (343)
Q Consensus       132 ~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l  209 (343)
                      .....++.+|..|..++||||||||+|.++..  ...++....+...++..++.....   .+++||+|||.++.+|+++
T Consensus        81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~vlvi~tTn~~~~ld~al  157 (258)
T d1e32a2          81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---AHVIVMAATNRPNSIDPAL  157 (258)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCS---SCEEEEEEESCGGGSCGGG
T ss_pred             cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhcccccccccc---CCccEEEeCCCccccchhh
Confidence            99999999999999999999999999999873  222344566778888877766543   4899999999999999999


Q ss_pred             hc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         210 KR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       210 ~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      +|  ||++.|+        |..||+.+++......+++++.||++|+|||++||.++|++|...|++|...
T Consensus       158 ~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~  228 (258)
T d1e32a2         158 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD  228 (258)
T ss_dssp             TSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            99  9999998        9999999999888888999999999999999999999999999999988764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-39  Score=290.30  Aligned_cols=217  Identities=37%  Similarity=0.642  Sum_probs=188.3

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhcc-CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGI-LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH  129 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~  129 (343)
                      |..+|+||+|+++++++|.+.+..++.+++.+... ..+++++|||||||||||++|+++|.+++.+++.+++.++.+.+
T Consensus         2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~   81 (265)
T d1r7ra3           2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW   81 (265)
T ss_dssp             CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSC
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhcc
Confidence            77899999999999999999999888888877654 67888999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHcCCcEEEEcccccccCC-----CCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCC
Q psy7809         130 YGESEKLVRALFETARARAPAVIFIDEVDAFCSG-----SREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWD  204 (343)
Q Consensus       130 ~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~-----~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~  204 (343)
                      .+.....++.+|..|..+.||||+|||+|.++..     ........++.+.|+..++++....   +++||+|||.++.
T Consensus        82 ~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~v~vi~ttn~~~~  158 (265)
T d1r7ra3          82 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK---NVFIIGATNRPDI  158 (265)
T ss_dssp             TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---------CCEEEECCBSCTT
T ss_pred             ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCC---CEEEEEeCCCchh
Confidence            9999999999999999999999999999999862     2233445668899999998876543   7999999999999


Q ss_pred             CCHHHhc--cccCcch--------HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         205 LDEALKR--RFEKRIS--------PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       205 l~~~l~~--rf~~~i~--------r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      ||++++|  ||+..+.        |.+||+.+++......+++++.||++|+||+++||..+|++|...|+++...
T Consensus       159 ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~~  234 (265)
T d1r7ra3         159 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE  234 (265)
T ss_dssp             TSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999997  8998887        9999999999887778999999999999999999999999999999987654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=1.3e-24  Score=190.43  Aligned_cols=161  Identities=18%  Similarity=0.239  Sum_probs=128.0

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccch-HHHHHHHHHHHHHcCCcEEEEcccccccCCC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGES-EKLVRALFETARARAPAVIFIDEVDAFCSGS  164 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~-~~~i~~~~~~a~~~~p~il~iDeid~l~~~~  164 (343)
                      ..++.++|||||||||||++|+++|++++.+++.++++++...+.+.. ...++.+|..|...+||||||||+|.++...
T Consensus        37 ~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~  116 (246)
T d1d2na_          37 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV  116 (246)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhc
Confidence            357789999999999999999999999999999999988766665544 4668999999999999999999999998742


Q ss_pred             C-chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHH-HhccccCcch------HHHHHhhhhcCCCCCCcc
Q psy7809         165 R-EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEA-LKRRFEKRIS------PIQIIGLCLGEIRKDPNV  236 (343)
Q Consensus       165 ~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~-l~~rf~~~i~------r~~il~~~~~~~~~~~~~  236 (343)
                      . .......++..|+..+++....  ..+++||+|||.++.+++. +.+||+..|.      |.++++.+... ....+.
T Consensus       117 ~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~~-~~~~~~  193 (246)
T d1d2na_         117 PIGPRFSNLVLQALLVLLKKAPPQ--GRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL-GNFKDK  193 (246)
T ss_dssp             TTTTBCCHHHHHHHHHHTTCCCST--TCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-TCSCHH
T ss_pred             ccccchhHHHHHHHHHHhcCCCcc--ccceeeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHHHhc-cCCChH
Confidence            2 2333467778888888876432  4479999999999999875 5569988776      77777654432 334567


Q ss_pred             cHHHHHHHccCCC
Q psy7809         237 DVATLSKQLIGYS  249 (343)
Q Consensus       237 ~~~~la~~t~g~s  249 (343)
                      +...+++.+.|.+
T Consensus       194 ~~~~i~~~~~g~~  206 (246)
T d1d2na_         194 ERTTIAQQVKGKK  206 (246)
T ss_dssp             HHHHHHHHHTTSE
T ss_pred             HHHHHHHHcCCCc
Confidence            7888999998864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.6e-21  Score=169.72  Aligned_cols=191  Identities=21%  Similarity=0.244  Sum_probs=131.8

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY  130 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~  130 (343)
                      ++.+|+|++|++++++.|..++.....       ......++|||||||||||++|+++|++++.+++.++..+....  
T Consensus         4 RP~~~~divGqe~~~~~l~~~i~~~~~-------~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~--   74 (238)
T d1in4a2           4 RPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--   74 (238)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred             CCCcHHHcCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccH--
Confidence            356899999999999999998854311       11455689999999999999999999999999999887665432  


Q ss_pred             cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC-------------CCCCCCEEEEE
Q psy7809         131 GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT-------------GSGDKGVLVLA  197 (343)
Q Consensus       131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~-------------~~~~~~v~vI~  197 (343)
                          ..+...+..  ....+++++||+|.+..         .....++..++....             .....++++|+
T Consensus        75 ----~~~~~~~~~--~~~~~~~~ide~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~  139 (238)
T d1in4a2          75 ----GDMAAILTS--LERGDVLFIDEIHRLNK---------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG  139 (238)
T ss_dssp             ----HHHHHHHHH--CCTTCEEEEETGGGCCH---------HHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred             ----HHHHHHHHh--hccCCchHHHHHHHhhh---------HHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEE
Confidence                223333332  33457999999999842         122222332221100             00134789999


Q ss_pred             ecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy7809         198 ATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEIILIAAR  266 (343)
Q Consensus       198 ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~  266 (343)
                      +||.+..+++.+++||...+.        +..+++......... .+..+..+++.+.| +.+.+.++++.+...+..
T Consensus       140 at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~~~  216 (238)
T d1in4a2         140 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTV  216 (238)
T ss_dssp             EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence            999999999999998876553        666677666655433 34457888888877 677777777776655543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=2.8e-22  Score=181.43  Aligned_cols=169  Identities=25%  Similarity=0.351  Sum_probs=124.8

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc--ccccc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS--KHYGE  132 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~--~~~~~  132 (343)
                      .|+||+++++.+...+..+..+..+...  ...++.++||+||||||||+||+++|+.++.+++.++++++..  .+.+.
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~   94 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   94 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence            4799999999999877432211111111  1247789999999999999999999999999999999999974  46788


Q ss_pred             hHHHHHHHHHHHHH-----cCCcEEEEcccccccCCCCc---hhhhHHHHHHHhhhcccCCCCCC-----CCCEEEEEe-
Q psy7809         133 SEKLVRALFETARA-----RAPAVIFIDEVDAFCSGSRE---HEATRRVRCELLSHMDGVGTGSG-----DKGVLVLAA-  198 (343)
Q Consensus       133 ~~~~i~~~~~~a~~-----~~p~il~iDeid~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~-----~~~v~vI~t-  198 (343)
                      ....+..+|..+..     .+||||||||+|++++....   ......+++.|+..+++......     ..++++|++ 
T Consensus        95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~g  174 (309)
T d1ofha_          95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG  174 (309)
T ss_dssp             TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred             ccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEecc
Confidence            88889999988744     35799999999999874332   22334578889998886432110     225667776 


Q ss_pred             ---cCCCCCCCHHHhccccCcch--------HHHHHhh
Q psy7809         199 ---TNHPWDLDEALKRRFEKRIS--------PIQIIGL  225 (343)
Q Consensus       199 ---tn~~~~l~~~l~~rf~~~i~--------r~~il~~  225 (343)
                         ++.++.++|+++.||+..+.        +.+|+..
T Consensus       175 a~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~  212 (309)
T d1ofha_         175 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE  212 (309)
T ss_dssp             CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred             chhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHH
Confidence               57788899999999988775        6666544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.85  E-value=1.2e-22  Score=182.45  Aligned_cols=138  Identities=21%  Similarity=0.255  Sum_probs=109.9

Q ss_pred             CCCceE-EEEcCCCchHHHHHHHHHHHhC--CceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCC
Q psy7809          87 RPWRGI-LLFGPPGTGKTLLAKAVASQHG--STFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSG  163 (343)
Q Consensus        87 ~~~~~v-ll~Gp~GtGKT~la~~ia~~l~--~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~  163 (343)
                      ..++|+ ||+||||||||.+|+++|.+++  .+|+.++++++.++|+|..+..++.+|..++.  ||||||||||.+++.
T Consensus       120 ~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~ilf~DEid~~~~~  197 (321)
T d1w44a_         120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVIDSLKNVIGA  197 (321)
T ss_dssp             EEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSEEEEECCTTTC--
T ss_pred             ccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccEEEeehhhhhccc
Confidence            445565 5589999999999999999986  67999999999999999999999999999975  799999999999874


Q ss_pred             CC---chhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHH----hc--cccCcch--------HHHHHhhh
Q psy7809         164 SR---EHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEAL----KR--RFEKRIS--------PIQIIGLC  226 (343)
Q Consensus       164 ~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l----~~--rf~~~i~--------r~~il~~~  226 (343)
                      ..   ......+++++|+..|+++....   +++||++|| |+.+++++    .+  ||+..+.        |.+|+..+
T Consensus       198 r~~~~~~~~~~r~v~~lL~e~dg~~~~~---~v~viaatN-~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~~~  273 (321)
T d1w44a_         198 AGGNTTSGGISRGAFDLLSDIGAMAASR---GCVVIASLN-PTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRT  273 (321)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHH---TCEEEEECC-CCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEEEEC
T ss_pred             cccCCCCCcchhhhhhhhhhccccccCC---CeEEEEeCC-CcccccchhhhhhccCcccceeecCCCChHHHHHHHHHh
Confidence            32   23344689999999999886644   799999999 56555544    45  8888876        78888777


Q ss_pred             hcCC
Q psy7809         227 LGEI  230 (343)
Q Consensus       227 ~~~~  230 (343)
                      ...+
T Consensus       274 ~~~~  277 (321)
T d1w44a_         274 GEGL  277 (321)
T ss_dssp             BTTC
T ss_pred             ccCc
Confidence            6655

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=2e-20  Score=162.94  Aligned_cols=186  Identities=21%  Similarity=0.267  Sum_probs=118.7

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccc
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHY  130 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~  130 (343)
                      +|.+|+|++|++++++.|..++.....       ...++.++|||||||||||++|+++|++++.++..++.......  
T Consensus         4 RP~~~ddivGq~~~~~~L~~~i~~~~~-------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~--   74 (239)
T d1ixsb2           4 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--   74 (239)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHHHTT-------SSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccc--
Confidence            467899999999999999998864321       12456799999999999999999999999999999987665431  


Q ss_pred             cchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc-----CCC--------CCCCCCEEEEE
Q psy7809         131 GESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG-----VGT--------GSGDKGVLVLA  197 (343)
Q Consensus       131 ~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~-----~~~--------~~~~~~v~vI~  197 (343)
                      +.    ......... ...+|++|||+|.+..         .....++..++.     ...        .....++++|+
T Consensus        75 ~~----~~~~~~~~~-~~~~i~~iDe~~~~~~---------~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~  140 (239)
T d1ixsb2          75 GD----LAAILANSL-EEGDILFIDEIHRLSR---------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG  140 (239)
T ss_dssp             HH----HHHHHHTTC-CTTCEEEEETGGGCCH---------HHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEE
T ss_pred             hh----hHHHHHhhc-cCCCeeeeecccccch---------hHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEe
Confidence            11    111111111 2346999999998842         111222222211     000        01133677888


Q ss_pred             ecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy7809         198 ATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDIRDLCQEI  260 (343)
Q Consensus       198 ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~A  260 (343)
                      +|+++....+..++++...+.        +..++...+...... ....++.+|..+.| ..+...++++.+
T Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~  211 (239)
T d1ixsb2         141 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV  211 (239)
T ss_dssp             EESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHH
T ss_pred             eccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            888887766666664333332        566666565554332 34457789999988 455555555544

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.80  E-value=1.7e-19  Score=156.10  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=125.8

Q ss_pred             HhhccccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC-----C
Q psy7809          41 LVEKDIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG-----S  115 (343)
Q Consensus        41 ~~~~~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~  115 (343)
                      .+.+++.+++.+.+|+||+|++++++.|..++...            ...++||+||||+|||++|+++|++++     .
T Consensus         9 ~~~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~   76 (231)
T d1iqpa2           9 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRH   76 (231)
T ss_dssp             HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH
T ss_pred             hhhchHHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCC
Confidence            34567889999999999999999999999988532            335799999999999999999999875     3


Q ss_pred             ceEEEcCCccccccccchHHHHHHHHHHH------HHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCC
Q psy7809         116 TFFNVLPSSLTSKHYGESEKLVRALFETA------RARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSG  189 (343)
Q Consensus       116 ~~~~v~~~~l~~~~~~~~~~~i~~~~~~a------~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  189 (343)
                      .++++++++..+.      ..+...+...      ....+.|+++||+|.+..         .....|+..++..     
T Consensus        77 ~~~e~n~s~~~~~------~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~---------~~~~~ll~~l~~~-----  136 (231)
T d1iqpa2          77 NFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------DAQQALRRTMEMF-----  136 (231)
T ss_dssp             HEEEEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------HHHHHHHHHHHHT-----
T ss_pred             CeeEEecCcccch------hHHHHHHHHHHhhhhccCCCceEEeehhhhhcch---------hHHHHHhhhcccC-----
Confidence            6777777654321      1111222212      123467999999998843         3344566666533     


Q ss_pred             CCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCCC-CcccHHHHHHHccCCCHHHH
Q psy7809         190 DKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRKD-PNVDVATLSKQLIGYSGSDI  253 (343)
Q Consensus       190 ~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~~-~~~~~~~la~~t~g~s~~di  253 (343)
                      ..++.+|+++|.+..+++++++|+...-.       ...+++..+....+. ++..++.+|+.+.| +.+++
T Consensus       137 ~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g-diR~a  207 (231)
T d1iqpa2         137 SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRA  207 (231)
T ss_dssp             TTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHH
T ss_pred             CcceEEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence            33688999999999999999998754332       556666666655432 44557888888866 34433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.3e-19  Score=155.22  Aligned_cols=180  Identities=22%  Similarity=0.223  Sum_probs=120.5

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc-----------
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST-----------  116 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~-----------  116 (343)
                      +++.+.+|+|++|++++++.|..++...           ..++++||+||||+|||++|++++++++..           
T Consensus         4 ~KyrP~~~~dlig~~~~~~~L~~~i~~~-----------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~   72 (239)
T d1njfa_           4 RKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC   72 (239)
T ss_dssp             HHTCCSSGGGSCSCHHHHHHHHHHHHTT-----------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred             hhhCCCCHHHccChHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc
Confidence            5788899999999999999999888642           456679999999999999999999987532           


Q ss_pred             -------------eEEEcCCccccccccchHHHHHHHHHHHHH----cCCcEEEEcccccccCCCCchhhhHHHHHHHhh
Q psy7809         117 -------------FFNVLPSSLTSKHYGESEKLVRALFETARA----RAPAVIFIDEVDAFCSGSREHEATRRVRCELLS  179 (343)
Q Consensus       117 -------------~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~  179 (343)
                                   +++++..+..      ....++.+++.+..    ....|++|||+|.|         .....+.|+.
T Consensus        73 ~~~~~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l---------~~~~q~~Llk  137 (239)
T d1njfa_          73 DNCREIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHML---------SRHSFNALLK  137 (239)
T ss_dssp             HHHHHHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS---------CHHHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccC---------CHHHHHHHHH
Confidence                         2333322111      12234455444322    12359999999998         2355677888


Q ss_pred             hcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch----HH---HHHhhhhc-CCCCCCcccHHHHHHHccCCCHH
Q psy7809         180 HMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS----PI---QIIGLCLG-EIRKDPNVDVATLSKQLIGYSGS  251 (343)
Q Consensus       180 ~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~---~il~~~~~-~~~~~~~~~~~~la~~t~g~s~~  251 (343)
                      .|+..     ..++.+|++||+++.+.+++++|+.....    ..   .++...+. .....++..++.++..+.| +.+
T Consensus       138 ~lE~~-----~~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G-d~R  211 (239)
T d1njfa_         138 TLEEP-----PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR  211 (239)
T ss_dssp             HHHSC-----CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT-CHH
T ss_pred             HHhcC-----CCCeEEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC-CHH
Confidence            88754     34678999999999999999997743332    22   22222222 2222345567888888876 444


Q ss_pred             HHHHHHHH
Q psy7809         252 DIRDLCQE  259 (343)
Q Consensus       252 di~~l~~~  259 (343)
                      ..-++++.
T Consensus       212 ~ain~l~~  219 (239)
T d1njfa_         212 DALSLTDQ  219 (239)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.6e-19  Score=155.77  Aligned_cols=171  Identities=20%  Similarity=0.176  Sum_probs=115.6

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~  119 (343)
                      ++.+++.+.+|+|++|++++++.|..++...            ...++||+||||+|||++|+++|++++.     .+++
T Consensus         3 pw~ekyrP~~~~divg~~~~~~~L~~~i~~~------------~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e   70 (227)
T d1sxjc2           3 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE   70 (227)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred             chhhhhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEE
Confidence            3677889999999999999999999988542            2236999999999999999999998753     2556


Q ss_pred             EcCCccccccccchHHHHHHHHHHHHH------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCE
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETARA------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGV  193 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v  193 (343)
                      .++.+..+..      .....+.....      ....+++|||+|.+.         ....+.|+..++..     ...+
T Consensus        71 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~---------~~~~~~Ll~~le~~-----~~~~  130 (227)
T d1sxjc2          71 LNASDDRGID------VVRNQIKDFASTRQIFSKGFKLIILDEADAMT---------NAAQNALRRVIERY-----TKNT  130 (227)
T ss_dssp             ECTTSCCSHH------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------HHHHHHHHHHHHHT-----TTTE
T ss_pred             ecccccCCee------eeecchhhccccccccCCCeEEEEEeccccch---------hhHHHHHHHHhhhc-----ccce
Confidence            6655543321      11111111111      223499999999883         23456677777654     3367


Q ss_pred             EEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCC-CCCcccHHHHHHHccC
Q psy7809         194 LVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIR-KDPNVDVATLSKQLIG  247 (343)
Q Consensus       194 ~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~-~~~~~~~~~la~~t~g  247 (343)
                      ++++++|.+..+.+++++|+...-.       ...++...+.... ..++..++.+++.+.|
T Consensus       131 ~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G  192 (227)
T d1sxjc2         131 RFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG  192 (227)
T ss_dssp             EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred             eeccccCcHHHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCC
Confidence            8999999999999999997643322       3333333333332 2345557888888876

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.8e-17  Score=140.68  Aligned_cols=187  Identities=18%  Similarity=0.153  Sum_probs=119.5

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh------CCceEE
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH------GSTFFN  119 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l------~~~~~~  119 (343)
                      +..++.+.+|+|++|++++++.|..++...            ...+++|+||||+|||++++++|+++      ....+.
T Consensus         2 w~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~   69 (237)
T d1sxjd2           2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILE   69 (237)
T ss_dssp             HHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred             cchhhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhh
Confidence            567889999999999999999999877532            23469999999999999999999986      456667


Q ss_pred             EcCCccccccccchHHHHHHHH------------HHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC
Q psy7809         120 VLPSSLTSKHYGESEKLVRALF------------ETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG  187 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~------------~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~  187 (343)
                      +++....+.....  ..+....            .........|++|||+|.+..         ...+.++..++..   
T Consensus        70 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~---------~~~~~l~~~~~~~---  135 (237)
T d1sxjd2          70 LNASDERGISIVR--EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------DAQSALRRTMETY---  135 (237)
T ss_dssp             ECSSSCCCHHHHT--THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------HHHHHHHHHHHHT---
T ss_pred             eeccccccchHHH--HHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCH---------HHHHHHhhccccc---
Confidence            7665543321100  0111110            000111234999999998842         2334444544433   


Q ss_pred             CCCCCEEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809         188 SGDKGVLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQE  259 (343)
Q Consensus       188 ~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~  259 (343)
                        .....+|.+++....+.+++++||...-.       ...+++..+..... .++..++.||+.+.| ..+..-++++.
T Consensus       136 --~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g-d~R~ai~~L~~  212 (237)
T d1sxjd2         136 --SGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQS  212 (237)
T ss_dssp             --TTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHH
T ss_pred             --cccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence              23567888888888999999998643221       44555555554432 345557889998876 34443344444


Q ss_pred             HH
Q psy7809         260 II  261 (343)
Q Consensus       260 A~  261 (343)
                      +.
T Consensus       213 ~~  214 (237)
T d1sxjd2         213 AS  214 (237)
T ss_dssp             TH
T ss_pred             HH
Confidence            43

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.8e-17  Score=144.92  Aligned_cols=194  Identities=20%  Similarity=0.174  Sum_probs=117.9

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHH-----HhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQL-----FKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~-----~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      +.+++.+.+|+|++|++..+++|.+++.........     .........++|||||||||||++|+++|++++.+++.+
T Consensus         4 W~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~   83 (253)
T d1sxja2           4 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ   83 (253)
T ss_dssp             HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            456788999999999999999999988643211110     011123456899999999999999999999999999999


Q ss_pred             cCCccccccccchHHHHHHH---------H---H--HHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCC
Q psy7809         121 LPSSLTSKHYGESEKLVRAL---------F---E--TARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGT  186 (343)
Q Consensus       121 ~~~~l~~~~~~~~~~~i~~~---------~---~--~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~  186 (343)
                      ++.+..+......  .+...         +   .  ......+.++++||+|.+.....      .....++......  
T Consensus        84 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~------~~~~~~~~~~~~~--  153 (253)
T d1sxja2          84 NASDVRSKTLLNA--GVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------GGVGQLAQFCRKT--  153 (253)
T ss_dssp             CTTSCCCHHHHHH--TGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------THHHHHHHHHHHC--
T ss_pred             ccccchhhHHHHH--HHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchh------hhhHHHhhhhccc--
Confidence            9887654321100  00000         0   0  00112346999999999864322      2223344433222  


Q ss_pred             CCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHH
Q psy7809         187 GSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLC  257 (343)
Q Consensus       187 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~  257 (343)
                         ...++++++++....++ .+++|+. .+.        +..+++..+..... .++..++.|++.+.|    ||+.++
T Consensus       154 ---~~~ii~i~~~~~~~~~~-~l~~~~~-~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~G----DiR~ai  224 (253)
T d1sxja2         154 ---STPLILICNERNLPKMR-PFDRVCL-DIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVI  224 (253)
T ss_dssp             ---SSCEEEEESCTTSSTTG-GGTTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHH
T ss_pred             ---ccccccccccccccccc-cccceee-eeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCC----cHHHHH
Confidence               22456666555555555 4555432 222        66666666643221 234458889988755    776655


Q ss_pred             H
Q psy7809         258 Q  258 (343)
Q Consensus       258 ~  258 (343)
                      .
T Consensus       225 ~  225 (253)
T d1sxja2         225 N  225 (253)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.7e-17  Score=141.44  Aligned_cols=171  Identities=15%  Similarity=0.098  Sum_probs=117.1

Q ss_pred             cccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----ceEE
Q psy7809          45 DIVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----TFFN  119 (343)
Q Consensus        45 ~~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----~~~~  119 (343)
                      ++.+++.+.+|+|++|++++++.|..++...            ...++||+||||+|||++|+.+|++++.     .+++
T Consensus         4 pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~------------~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~   71 (224)
T d1sxjb2           4 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLE   71 (224)
T ss_dssp             CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred             chHhHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCeEEEECCCCCCchhhHHHHHHHHhcccccccccc
Confidence            4678899999999999999999999988542            2346999999999999999999998864     4777


Q ss_pred             EcCCccccccccchHHHHHHHHHHHHH-------cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCC
Q psy7809         120 VLPSSLTSKHYGESEKLVRALFETARA-------RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKG  192 (343)
Q Consensus       120 v~~~~l~~~~~~~~~~~i~~~~~~a~~-------~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  192 (343)
                      +++.+..+.      ..+...+.....       ....+++|||+|.+..         ...+.|+..++..     ...
T Consensus        72 ~n~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~---------~~~~~ll~~~e~~-----~~~  131 (224)
T d1sxjb2          72 LNASDDRGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------GAQQALRRTMELY-----SNS  131 (224)
T ss_dssp             ECTTSCCSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------HHHHTTHHHHHHT-----TTT
T ss_pred             ccccccCCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccch---------hHHHHHhhhcccc-----ccc
Confidence            777664432      122222222211       1245999999998832         3455666666644     336


Q ss_pred             EEEEEecCCCCCCCHHHhccccCcch-------HHHHHhhhhcCCCC-CCcccHHHHHHHccC
Q psy7809         193 VLVLAATNHPWDLDEALKRRFEKRIS-------PIQIIGLCLGEIRK-DPNVDVATLSKQLIG  247 (343)
Q Consensus       193 v~vI~ttn~~~~l~~~l~~rf~~~i~-------r~~il~~~~~~~~~-~~~~~~~~la~~t~g  247 (343)
                      ..++.+++....+.+++++|+...-.       ...++...+..... .++..++.++..+.|
T Consensus       132 ~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G  194 (224)
T d1sxjb2         132 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG  194 (224)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred             eeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC
Confidence            78889999999999999997754222       33334333333222 234457788888866

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.5e-16  Score=138.85  Aligned_cols=182  Identities=15%  Similarity=0.215  Sum_probs=110.5

Q ss_pred             ccccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCc---eEEEcC
Q psy7809          46 IVQTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGST---FFNVLP  122 (343)
Q Consensus        46 ~~~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~---~~~v~~  122 (343)
                      +.+++.+.+|+|++|.+++++.|..++...           ..+.++||+||||||||++|+++|+++...   ...++.
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~-----------~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~   69 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV   69 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccc
Confidence            457888999999999999999998766432           234579999999999999999999986221   111111


Q ss_pred             Cccc---------------------cccccc-hHHHHHHHHHHH--------------HHcCCcEEEEcccccccCCCCc
Q psy7809         123 SSLT---------------------SKHYGE-SEKLVRALFETA--------------RARAPAVIFIDEVDAFCSGSRE  166 (343)
Q Consensus       123 ~~l~---------------------~~~~~~-~~~~i~~~~~~a--------------~~~~p~il~iDeid~l~~~~~~  166 (343)
                      ....                     ....+. ....+.......              ......+++|||+|.+.     
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~-----  144 (252)
T d1sxje2          70 RQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-----  144 (252)
T ss_dssp             -------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred             ccccccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccc-----
Confidence            0000                     000000 111111111111              11223499999999883     


Q ss_pred             hhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccCcch--------HHHHHhhhhcC--CCCCCcc
Q psy7809         167 HEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEKRIS--------PIQIIGLCLGE--IRKDPNV  236 (343)
Q Consensus       167 ~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~--------r~~il~~~~~~--~~~~~~~  236 (343)
                          ....+.++..++..     ..++.+|++||.++.+++++++||. .++        ...++...+..  .....+.
T Consensus       145 ----~~~~~~l~~~~e~~-----~~~~~~Il~tn~~~~i~~~l~sR~~-~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~  214 (252)
T d1sxje2         145 ----KDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKSQCL-LIRCPAPSDSEISTILSDVVTNERIQLETKD  214 (252)
T ss_dssp             ----HHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCEECCSH
T ss_pred             ----cccchhhhcccccc-----cccccceeeeccccchhhhhhcchh-eeeecccchhhHHHHHHHHHHHcCCCCCcHH
Confidence                23345566666544     3367899999999999999999874 333        44444444433  2333344


Q ss_pred             cHHHHHHHccCCCHHHHHHHH
Q psy7809         237 DVATLSKQLIGYSGSDIRDLC  257 (343)
Q Consensus       237 ~~~~la~~t~g~s~~di~~l~  257 (343)
                      -++.|+..+.|    |++.++
T Consensus       215 ~l~~i~~~s~G----d~R~ai  231 (252)
T d1sxje2         215 ILKRIAQASNG----NLRVSL  231 (252)
T ss_dssp             HHHHHHHHHTT----CHHHHH
T ss_pred             HHHHHHHHcCC----cHHHHH
Confidence            56788888766    555443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.63  E-value=7.1e-15  Score=128.84  Aligned_cols=215  Identities=13%  Similarity=0.055  Sum_probs=132.1

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC----CceEEEcCCccccc-
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG----STFFNVLPSSLTSK-  128 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~----~~~~~v~~~~l~~~-  128 (343)
                      ..+.++|.+..++.+..++...+..+      ...+.+++|+||||||||++|+++++.+.    ..++.+++...... 
T Consensus        14 ~p~~l~~Re~ei~~l~~~l~~~l~~~------~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~   87 (276)
T d1fnna2          14 VPKRLPHREQQLQQLDILLGNWLRNP------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT   87 (276)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHST------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCC------CCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhh
Confidence            44578999999999888875432211      15677999999999999999999999874    45666665433211 


Q ss_pred             ---------------cccc-hHHHHHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCC
Q psy7809         129 ---------------HYGE-SEKLVRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDK  191 (343)
Q Consensus       129 ---------------~~~~-~~~~i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~  191 (343)
                                     ..+. .......+...... ..+.++++|++|.+..      ........++..+....    ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~~~~~~~~~~~----~~  157 (276)
T d1fnna2          88 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP------DILSTFIRLGQEADKLG----AF  157 (276)
T ss_dssp             HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH------HHHHHHHHHTTCHHHHS----SC
T ss_pred             hhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhh------hhhhhHHHHHhcccccc----cc
Confidence                           1111 22233344444433 3456888999987732      22222333333332221    23


Q ss_pred             CEEEEEecCCC---CCCCHHHhccccCc-ch--------HHHHHhhhhcCC---CCCCcccHHHHHHHccCC--------
Q psy7809         192 GVLVLAATNHP---WDLDEALKRRFEKR-IS--------PIQIIGLCLGEI---RKDPNVDVATLSKQLIGY--------  248 (343)
Q Consensus       192 ~v~vI~ttn~~---~~l~~~l~~rf~~~-i~--------r~~il~~~~~~~---~~~~~~~~~~la~~t~g~--------  248 (343)
                      .+.+|++++..   +.+++.+.+|+... +.        +.+|++..+...   ....+..++.++..+..+        
T Consensus       158 ~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G  237 (276)
T d1fnna2         158 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG  237 (276)
T ss_dssp             CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred             ceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCC
Confidence            67788888875   45778888865432 22        556666555432   223455567788776321        


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccHHHHHHHHHhc
Q psy7809         249 SGSDIRDLCQEIILIAAREVIQNAGFTGVNSKPPDGRNNIGAKGDDSKCQVAPLGSDRIVLNRSHFERAKEKC  321 (343)
Q Consensus       249 s~~di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~df~~Al~~~  321 (343)
                      +++.+.++|+.|...|..+...                              .       |+.+|+++|++++
T Consensus       238 ~~R~a~~ll~~a~~~A~~~~~~------------------------------~-------I~~edv~~A~~~~  273 (276)
T d1fnna2         238 DARLAIDILYRSAYAAQQNGRK------------------------------H-------IAPEDVRKSSKEV  273 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCS------------------------------S-------CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCC------------------------------C-------cCHHHHHHHHHHH
Confidence            4566677888887776644221                              2       9999999999875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=9e-15  Score=127.76  Aligned_cols=192  Identities=23%  Similarity=0.262  Sum_probs=130.8

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcCC
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLPS  123 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~~  123 (343)
                      .++.++|.++..+++.+.+..            ....+++|.||||+|||++++.+|...          +..++.++..
T Consensus        16 ~ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~   83 (268)
T d1r6bx2          16 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG   83 (268)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred             CCCcccChHHHHHHHHHHHhc------------CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeec
Confidence            467789999999999988864            344689999999999999999999864          4679999999


Q ss_pred             cccc--ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCC
Q psy7809         124 SLTS--KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNH  201 (343)
Q Consensus       124 ~l~~--~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~  201 (343)
                      .+..  .+.|+.+..+..++..+......||||||++.|++.+...+.+..+.+.|...+.       .+.+.+|++|+.
T Consensus        84 ~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-------rg~i~vIgatT~  156 (268)
T d1r6bx2          84 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-------SGKIRVIGSTTY  156 (268)
T ss_dssp             ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-------SCCCEEEEEECH
T ss_pred             hHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-------CCCCeEEEeCCH
Confidence            8885  6788899999999999988888899999999998754433333344444444443       236788888874


Q ss_pred             C-----CCCCHHHhccccCcch-------HHHHHhhhhcC----C-CCCCcccHHHHHHHccCC-----CHHHHHHHHHH
Q psy7809         202 P-----WDLDEALKRRFEKRIS-------PIQIIGLCLGE----I-RKDPNVDVATLSKQLIGY-----SGSDIRDLCQE  259 (343)
Q Consensus       202 ~-----~~l~~~l~~rf~~~i~-------r~~il~~~~~~----~-~~~~~~~~~~la~~t~g~-----s~~di~~l~~~  259 (343)
                      .     -.-|+++.+||.....       -..|++.....    + ....+..+..+...+..|     -|.---++++.
T Consensus       157 eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdllDe  236 (268)
T d1r6bx2         157 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE  236 (268)
T ss_dssp             HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHHHH
Confidence            3     2457899999986654       33444432222    1 112344455555544322     23333357777


Q ss_pred             HHHHH
Q psy7809         260 IILIA  264 (343)
Q Consensus       260 A~~~a  264 (343)
                      |+..+
T Consensus       237 a~a~~  241 (268)
T d1r6bx2         237 AGARA  241 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.59  E-value=9.4e-15  Score=124.21  Aligned_cols=185  Identities=19%  Similarity=0.243  Sum_probs=115.8

Q ss_pred             CCCCCCccc-c--cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc
Q psy7809          51 TGVGWDDIA-G--LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS  124 (343)
Q Consensus        51 ~~~~~~~l~-G--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~  124 (343)
                      |..+|++++ |  .+.+...+.+++..+.          ...+.++||||+|||||+|++++|+++   +..+++++..+
T Consensus         5 ~~~tFdnF~vg~~N~~a~~~~~~~~~~~~----------~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~   74 (213)
T d1l8qa2           5 PKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD   74 (213)
T ss_dssp             TTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCChhhccCCCcHHHHHHHHHHHHhCcC----------CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHH
Confidence            567899964 5  5566666777665442          223459999999999999999999887   45677777666


Q ss_pred             cccccccchHH-HHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         125 LTSKHYGESEK-LVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       125 l~~~~~~~~~~-~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      +.......... ....++....  ..++|+|||+|.+.+....       ...|...++....   .++.+|+++...|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~~~~-------~~~lf~lin~~~~---~~~~iiits~~~p~  142 (213)
T d1l8qa2          75 FAQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGKERT-------QIEFFHIFNTLYL---LEKQIILASDRHPQ  142 (213)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTCHHH-------HHHHHHHHHHHHH---TTCEEEEEESSCGG
T ss_pred             HHHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCchHH-------HHHHHHHHHHHhh---ccceEEEecCCcch
Confidence            55433222111 1222222222  3479999999999653221       2222222222221   22556666666775


Q ss_pred             CC---CHHHhccccCcch---------HHHHHhhhhcCCCC-CCcccHHHHHHHccCCCHHHHHHHHHH
Q psy7809         204 DL---DEALKRRFEKRIS---------PIQIIGLCLGEIRK-DPNVDVATLSKQLIGYSGSDIRDLCQE  259 (343)
Q Consensus       204 ~l---~~~l~~rf~~~i~---------r~~il~~~~~~~~~-~~~~~~~~la~~t~g~s~~di~~l~~~  259 (343)
                      .+   .+.+.+||...+.         |..+++..+....+ .++..++.|++++.  +.+||..+++.
T Consensus       143 ~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~  209 (213)
T d1l8qa2         143 KLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKL  209 (213)
T ss_dssp             GCTTSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHH
T ss_pred             hccccchHHHHHhhCceEEEECCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHH
Confidence            44   5888888765443         77788887766533 35566888999874  57888776654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.58  E-value=3.9e-15  Score=131.30  Aligned_cols=207  Identities=12%  Similarity=-0.019  Sum_probs=116.4

Q ss_pred             CCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---------CceEEEcCCcc
Q psy7809          55 WDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---------STFFNVLPSSL  125 (343)
Q Consensus        55 ~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---------~~~~~v~~~~l  125 (343)
                      .+.|.|.+..++.|..++..+..+..   .....+..++|+||||||||++++++++++.         ..+.++++...
T Consensus        15 P~~~~~Re~e~~~l~~~l~~~~~~~~---~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~   91 (287)
T d1w5sa2          15 PPELRVRRGEAEALARIYLNRLLSGA---GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA   91 (287)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSS---CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCC---CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccc
Confidence            45778888888888876643321110   0001122467789999999999999998863         33445554433


Q ss_pred             ccc----------------cccchHHH-HHHHHHHHHH-cCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCC
Q psy7809         126 TSK----------------HYGESEKL-VRALFETARA-RAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTG  187 (343)
Q Consensus       126 ~~~----------------~~~~~~~~-i~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~  187 (343)
                      ...                ..+..... ...++..... ..+.++++||+|.+.............+..+...+..... 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~-  170 (287)
T d1w5sa2          92 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG-  170 (287)
T ss_dssp             CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS-
T ss_pred             cchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhc-
Confidence            221                11222222 2333333332 3456888999999976443333333333344444433322 


Q ss_pred             CCCCCEEEEEecCCCCCC------CHHHhccccCcch--------HHHHHhhhhcCCC---CCCcccHHHHHHHccCC--
Q psy7809         188 SGDKGVLVLAATNHPWDL------DEALKRRFEKRIS--------PIQIIGLCLGEIR---KDPNVDVATLSKQLIGY--  248 (343)
Q Consensus       188 ~~~~~v~vI~ttn~~~~l------~~~l~~rf~~~i~--------r~~il~~~~~~~~---~~~~~~~~~la~~t~g~--  248 (343)
                        ...+.+|+.++.++.+      .+.+.+||...+.        ..+|++..+....   ..++..++.+|+.+..+  
T Consensus       171 --~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~  248 (287)
T d1w5sa2         171 --VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG  248 (287)
T ss_dssp             --CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred             --ccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhcccc
Confidence              3366777777665432      3566667766555        5566665544321   12344478888877432  


Q ss_pred             ---CHHHHHHHHHHHHHHHHHH
Q psy7809         249 ---SGSDIRDLCQEIILIAARE  267 (343)
Q Consensus       249 ---s~~di~~l~~~A~~~a~~r  267 (343)
                         .++...++|+.|+..|..+
T Consensus       249 ~~gd~R~ai~~l~~a~~~A~~~  270 (287)
T d1w5sa2         249 GDGSARRAIVALKMACEMAEAM  270 (287)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHc
Confidence               4556667888888777644

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.9e-14  Score=121.91  Aligned_cols=165  Identities=15%  Similarity=0.141  Sum_probs=106.4

Q ss_pred             cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCC-----------------------
Q psy7809          59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGS-----------------------  115 (343)
Q Consensus        59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~-----------------------  115 (343)
                      .+++.+.+.|...+...           ..+.++||+||+|+|||++|+.+|+.+..                       
T Consensus         5 Pw~~~~~~~l~~~~~~~-----------~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~   73 (207)
T d1a5ta2           5 PWLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH   73 (207)
T ss_dssp             GGGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred             cccHHHHHHHHHHHHcC-----------CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccc
Confidence            45677777777766543           45677999999999999999999998732                       


Q ss_pred             -ceEEEcCCccccccccchHHHHHHHHHHHH----HcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCC
Q psy7809         116 -TFFNVLPSSLTSKHYGESEKLVRALFETAR----ARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGD  190 (343)
Q Consensus       116 -~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~  190 (343)
                       .++.+...+-.   ..-....++.+...+.    .....|++|||+|.+         .....+.|++.|+..     +
T Consensus        74 ~~~~~~~~~~~~---~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l---------~~~a~n~Llk~lEep-----~  136 (207)
T d1a5ta2          74 PDYYTLAPEKGK---NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL---------TDAAANALLKTLEEP-----P  136 (207)
T ss_dssp             TTEEEECCCTTC---SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB---------CHHHHHHHHHHHTSC-----C
T ss_pred             cccchhhhhhcc---cccccchhhHHhhhhhhccccCccceEEechhhhh---------hhhhhHHHHHHHHhh-----c
Confidence             12222211100   0111233555554432    223459999999998         345678899999865     4


Q ss_pred             CCEEEEEecCCCCCCCHHHhccccCcch----HHHHHhhhhcCCCCCCcccHHHHHHHccCCCHHHH
Q psy7809         191 KGVLVLAATNHPWDLDEALKRRFEKRIS----PIQIIGLCLGEIRKDPNVDVATLSKQLIGYSGSDI  253 (343)
Q Consensus       191 ~~v~vI~ttn~~~~l~~~l~~rf~~~i~----r~~il~~~~~~~~~~~~~~~~~la~~t~g~s~~di  253 (343)
                      .++++|++|++++.+.++++||+...-.    ..++...+-+... .++..+..+++.+.| ++++.
T Consensus       137 ~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~~~~~-~~~~~~~~i~~~s~G-s~r~a  201 (207)
T d1a5ta2         137 AETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-MSQDALLAALRLSAG-SPGAA  201 (207)
T ss_dssp             TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHTTT-CHHHH
T ss_pred             ccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHHHcCC-CCHHHHHHHHHHcCC-CHHHH
Confidence            5789999999999999999998632222    3444333333222 345557778888876 44443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.54  E-value=7.9e-17  Score=147.60  Aligned_cols=169  Identities=18%  Similarity=0.058  Sum_probs=99.7

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSR  165 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~  165 (343)
                      .+..++++||||||||||++|+++|+.++.+++++++++..+.+.            ......+.+.++|+++.......
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~------------l~~~~~~~~~l~d~~~~~~~~~~  218 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFE------------LGVAIDQFLVVFEDVKGTGGESR  218 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHH------------HGGGTTCSCEEETTCCCSTTTTT
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHH------------HHhHHHHHHHHHHHHHHhhhhcc
Confidence            355679999999999999999999999999999999887654321            11112233445555554432111


Q ss_pred             c--hhhhHHHHHHHhhhcccCCCC-----CC----CCCEEEEEecCCCCCCCHHHhc-cccCcch--------H-HHHHh
Q psy7809         166 E--HEATRRVRCELLSHMDGVGTG-----SG----DKGVLVLAATNHPWDLDEALKR-RFEKRIS--------P-IQIIG  224 (343)
Q Consensus       166 ~--~~~~~~~~~~ll~~l~~~~~~-----~~----~~~v~vI~ttn~~~~l~~~l~~-rf~~~i~--------r-~~il~  224 (343)
                      .  ....-.-+..+...+++....     ..    .....+|+|||....  +.++. ||+..+.        | ..++.
T Consensus       219 ~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~~--~~~r~~Rf~~~i~~~~~~~~~~~~~~l~  296 (362)
T d1svma_         219 DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSV--PKTLQARFVKQIDFRPKDYLKHCLERSE  296 (362)
T ss_dssp             TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCC--CHHHHTTEEEEEECCCCHHHHHHHHTCT
T ss_pred             CCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeecccccc--cccccccCceEEeecCCCcHHHHHHHHH
Confidence            0  000001111222222221100     00    001237889996432  23332 7777765        2 23334


Q ss_pred             hhhcCCCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7809         225 LCLGEIRKDPNVDVATLSKQLIGYSGSDIRDLCQEIILIAAREVIQ  270 (343)
Q Consensus       225 ~~~~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~A~~~a~~r~~~  270 (343)
                      .++....+  ..+.+.|+..+.|++++|++++++.+...+.++...
T Consensus       297 ~i~~~~~l--~~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l~~  340 (362)
T d1svma_         297 FLLEKRII--QSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDK  340 (362)
T ss_dssp             HHHHTTCT--TCHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHHH
T ss_pred             HHhcccCC--CCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            44444333  456778999999999999999999988887776654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.4e-14  Score=120.00  Aligned_cols=145  Identities=22%  Similarity=0.311  Sum_probs=105.6

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEcC
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVLP  122 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~~  122 (343)
                      -.++-++|.++..+++.+.+...            ...+++|.||||+|||++++.+|...          +.+++.++.
T Consensus        19 g~ld~~igRd~Ei~~l~~iL~r~------------~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~   86 (195)
T d1jbka_          19 GKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM   86 (195)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred             CCCCCCcCcHHHHHHHHHHHhcc------------CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence            45678999999999999888653            34689999999999999999999865          467999999


Q ss_pred             Ccccc--ccccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEec
Q psy7809         123 SSLTS--KHYGESEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAAT  199 (343)
Q Consensus       123 ~~l~~--~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~tt  199 (343)
                      ..+..  ++.|+.+..+..++..+.... ..||||||++.+++.+.... ...+.+.|...|.       ...+.+|++|
T Consensus        87 ~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g-~~d~~~~Lkp~L~-------rg~l~~Igat  158 (195)
T d1jbka_          87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPALA-------RGELHCVGAT  158 (195)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHHH-------TTSCCEEEEE
T ss_pred             HHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCC-cccHHHHHHHHHh-------CCCceEEecC
Confidence            88874  456788888999998876654 56999999999987433221 1123344444443       2256788887


Q ss_pred             CCCC-----CCCHHHhccccCcc
Q psy7809         200 NHPW-----DLDEALKRRFEKRI  217 (343)
Q Consensus       200 n~~~-----~l~~~l~~rf~~~i  217 (343)
                      ...+     .-|+++.+||....
T Consensus       159 T~eey~~~~e~d~aL~rrF~~I~  181 (195)
T d1jbka_         159 TLDEYRQYIEKDAALERRFQKVF  181 (195)
T ss_dssp             CHHHHHHHTTTCHHHHTTEEEEE
T ss_pred             CHHHHHHHHHcCHHHHhcCCEee
Confidence            7432     45889999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.50  E-value=5.6e-14  Score=127.57  Aligned_cols=143  Identities=23%  Similarity=0.281  Sum_probs=89.1

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc-----
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL-----  125 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l-----  125 (343)
                      |...|.+|+|++.+|+.|.-.+..+            ...++||+||||||||++||+++..+.. +..+....+     
T Consensus         2 ~~~~f~~I~Gq~~~kral~laa~~~------------~~h~vLl~G~pG~GKT~lar~~~~iLp~-~~~~~~~~~~~~~~   68 (333)
T d1g8pa_           2 PVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPE-IEAVEGCPVSSPNV   68 (333)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCC-EEEETTCTTCCSSG
T ss_pred             CCCChhhccCcHHHHHHHHHHHhcc------------CCCeEEEECCCCccHHHHHHHHHHhCCC-chhhccCccccCcc
Confidence            3456999999999999887555432            2247999999999999999999987621 111110000     


Q ss_pred             ---------------------ccccccchHHHH------HH------------HHHHHHHcCCcEEEEcccccccCCCCc
Q psy7809         126 ---------------------TSKHYGESEKLV------RA------------LFETARARAPAVIFIDEVDAFCSGSRE  166 (343)
Q Consensus       126 ---------------------~~~~~~~~~~~i------~~------------~~~~a~~~~p~il~iDeid~l~~~~~~  166 (343)
                                           .....+.+...+      ..            .+..|   ...|+||||++.+      
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A---~~gvl~iDEi~~~------  139 (333)
T d1g8pa_          69 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARA---NRGYLYIDECNLL------  139 (333)
T ss_dssp             GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHH---TTEEEEETTGGGS------
T ss_pred             ccccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccc---cccEeecccHHHH------
Confidence                                 000001111110      00            11112   1269999999776      


Q ss_pred             hhhhHHHHHHHhhhcccCC--------CCCCCCCEEEEEecCCC-CCCCHHHhccccCcch
Q psy7809         167 HEATRRVRCELLSHMDGVG--------TGSGDKGVLVLAATNHP-WDLDEALKRRFEKRIS  218 (343)
Q Consensus       167 ~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vI~ttn~~-~~l~~~l~~rf~~~i~  218 (343)
                         ...+++.|++.|+.-.        ....+.++++|+|+|.. ..+++++++||...+.
T Consensus       140 ---~~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~  197 (333)
T d1g8pa_         140 ---EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVE  197 (333)
T ss_dssp             ---CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEE
T ss_pred             ---HHHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceee
Confidence               4577888888886311        01113468899999875 4689999999986654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=2.9e-13  Score=121.55  Aligned_cols=199  Identities=22%  Similarity=0.265  Sum_probs=126.8

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc-----
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK-----  128 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~-----  128 (343)
                      .|+||+++++.+...+......  + .....|...+||+||+|+|||.+|+.+|..+   +.+++.++++++...     
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~--l-~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAG--L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR  100 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGG--C-SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGG
T ss_pred             eEeCHHHHHHHHHHHHHHHhcC--C-CCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhh
Confidence            5799999999998877532110  0 0011333467888999999999999999988   678999999877642     


Q ss_pred             -------cccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcccC--CC----CCCCCCEEE
Q psy7809         129 -------HYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGV--GT----GSGDKGVLV  195 (343)
Q Consensus       129 -------~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~--~~----~~~~~~v~v  195 (343)
                             |+|...  -..+......+..+||+|||||+.         +..+++.|+..++.-  ..    .-..++.++
T Consensus       101 L~g~~~gyvG~~~--~~~l~~~~~~~p~~Vvl~DEieK~---------~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~  169 (315)
T d1qvra3         101 LIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA---------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVI  169 (315)
T ss_dssp             C----------------CHHHHHHHCSSEEEEESSGGGS---------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEE
T ss_pred             hcCCCCCCcCccc--CChHHHHHHhCCCcEEEEehHhhc---------CHHHHHHHHHHhccCceeCCCCcEecCcceEE
Confidence                   222111  122334445555689999999987         345677777776531  11    011347899


Q ss_pred             EEecCCC--------------------------CCCCHHHhccccCcch--------HHHHHhhhhc-------CCCCC-
Q psy7809         196 LAATNHP--------------------------WDLDEALKRRFEKRIS--------PIQIIGLCLG-------EIRKD-  233 (343)
Q Consensus       196 I~ttn~~--------------------------~~l~~~l~~rf~~~i~--------r~~il~~~~~-------~~~~~-  233 (343)
                      |+|||--                          ..+.|.++.||+..+.        -..|+...+.       ..... 
T Consensus       170 i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i~l  249 (315)
T d1qvra3         170 ILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISL  249 (315)
T ss_dssp             EEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             EEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            9999942                          3477888999987764        2222222221       11111 


Q ss_pred             --CcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         234 --PNVDVATLSKQ--LIGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       234 --~~~~~~~la~~--t~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                        .+..++.|++.  ...|-++.|+.++++.+...+.+..
T Consensus       250 ~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La~~i  289 (315)
T d1qvra3         250 ELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI  289 (315)
T ss_dssp             EECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence              33346677775  3455568999999998888886654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.7e-13  Score=121.88  Aligned_cols=201  Identities=17%  Similarity=0.196  Sum_probs=125.5

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccccc-----cc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSKH-----YG  131 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~~-----~~  131 (343)
                      .|+||+++++.+...+......   ....-.|...+||+||+|+|||.||+++|..++.+++.++++++....     .|
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~---l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g   99 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG   99 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred             eecChHHHHHHHHHHHHHHHcc---CCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcc
Confidence            5899999999998877532110   000113444789999999999999999999999999999998875421     11


Q ss_pred             ----chHHHH-HHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhccc------CCCCCCCCCEEEEEecC
Q psy7809         132 ----ESEKLV-RALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDG------VGTGSGDKGVLVLAATN  200 (343)
Q Consensus       132 ----~~~~~i-~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~------~~~~~~~~~v~vI~ttn  200 (343)
                          ...... ..+.........+|+++||+|+.         +..+++.|++.++.      ....-.-.+.++|+|+|
T Consensus       100 ~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa---------~~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsn  170 (315)
T d1r6bx3         100 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA---------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN  170 (315)
T ss_dssp             CCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred             cCCCccccccCChhhHHHHhCccchhhhcccccc---------cchHhhhhHHhhccceecCCCCCccCccceEEEeccc
Confidence                111111 11333344566689999999987         34577788887752      11111134788999998


Q ss_pred             CCC-------------------------CCCHHHhccccCcch--------HHHHHhhhhcCC-------CC---CCccc
Q psy7809         201 HPW-------------------------DLDEALKRRFEKRIS--------PIQIIGLCLGEI-------RK---DPNVD  237 (343)
Q Consensus       201 ~~~-------------------------~l~~~l~~rf~~~i~--------r~~il~~~~~~~-------~~---~~~~~  237 (343)
                      --.                         .+.|.++.|++..+.        ...|+...+...       ..   ..+..
T Consensus       171 ig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~~~~~a  250 (315)
T d1r6bx3         171 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEA  250 (315)
T ss_dssp             SSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHH
T ss_pred             hhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchhhHHHH
Confidence            431                         246777778886654        223333222221       11   13334


Q ss_pred             HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q psy7809         238 VATLSKQL--IGYSGSDIRDLCQEIILIAAREVI  269 (343)
Q Consensus       238 ~~~la~~t--~g~s~~di~~l~~~A~~~a~~r~~  269 (343)
                      ++.|+...  ..+-++.|+.++++-+...+.+..
T Consensus       251 ~~~l~~~~yd~~~GaR~L~r~Ie~~i~~~la~~i  284 (315)
T d1r6bx3         251 RNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL  284 (315)
T ss_dssp             HHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence            56666542  445568888888877777665544

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.41  E-value=1.6e-12  Score=121.62  Aligned_cols=71  Identities=27%  Similarity=0.302  Sum_probs=54.2

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcccc
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTS  127 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~  127 (343)
                      -|+||+++|+.|.-.+.....+-.+...  ..-.+.|+||.||+|||||.||+++|+.++.||+.++|..+..
T Consensus        15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTe   87 (443)
T d1g41a_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   87 (443)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeee
Confidence            3899999999998877543221111111  1234679999999999999999999999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.41  E-value=8.4e-13  Score=120.64  Aligned_cols=127  Identities=26%  Similarity=0.377  Sum_probs=82.5

Q ss_pred             cccccHHHHHHHHHHHhccccChH----HH--------------hccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQ----LF--------------KGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~----~~--------------~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      .|+||+++++.+...+.....+-.    +.              .....++.++||.||+|||||.+||++|..++.+|+
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            589999999999876642211100    00              011357889999999999999999999999999999


Q ss_pred             EEcCCccccc-cccc-hHHHHHHHHHHH----HHcCCcEEEEcccccccCCCC-----chhhhHHHHHHHhhhccc
Q psy7809         119 NVLPSSLTSK-HYGE-SEKLVRALFETA----RARAPAVIFIDEVDAFCSGSR-----EHEATRRVRCELLSHMDG  183 (343)
Q Consensus       119 ~v~~~~l~~~-~~~~-~~~~i~~~~~~a----~~~~p~il~iDeid~l~~~~~-----~~~~~~~~~~~ll~~l~~  183 (343)
                      .++++.+... |+|. ....+..++..+    .....+|+++||+|...+...     .......+.+.|++.+++
T Consensus        98 r~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~  173 (364)
T d1um8a_          98 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG  173 (364)
T ss_dssp             EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC
T ss_pred             ehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcC
Confidence            9999887753 3332 133455554432    334568999999999875211     122445688888888884

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=8.2e-13  Score=121.38  Aligned_cols=147  Identities=24%  Similarity=0.326  Sum_probs=92.5

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh----------CCceEEEc
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH----------GSTFFNVL  121 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l----------~~~~~~v~  121 (343)
                      .-.++-++|.+.-++++.+.+..            ...++++|.||||+|||+++..+|...          +..++.++
T Consensus        18 ~g~ld~~~gr~~ei~~~~~~L~r------------~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld   85 (387)
T d1qvra2          18 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ   85 (387)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred             cCCCCCCcCcHHHHHHHHHHHhc------------CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEee
Confidence            34577899999999999988864            344678999999999999999999764          45799999


Q ss_pred             CCcccc--ccccchHHHHHHHHHHHHHcC-CcEEEEcccccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEe
Q psy7809         122 PSSLTS--KHYGESEKLVRALFETARARA-PAVIFIDEVDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAA  198 (343)
Q Consensus       122 ~~~l~~--~~~~~~~~~i~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~t  198 (343)
                      ...+..  .|.|+.+..+..++..+.... +.||||||++.|++.+...+ +..+.+.|.-.|.       .+.+-+|++
T Consensus        86 ~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g-~~d~a~~Lkp~L~-------rg~~~~I~~  157 (387)
T d1qvra2          86 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AVDAGNMLKPALA-------RGELRLIGA  157 (387)
T ss_dssp             C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHH-------TTCCCEEEE
T ss_pred             HhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCC-cccHHHHHHHHHh-------CCCcceeee
Confidence            999885  567888999999998887764 57899999999987443221 2233444444443       225668888


Q ss_pred             cCCCC----CCCHHHhccccCcch
Q psy7809         199 TNHPW----DLDEALKRRFEKRIS  218 (343)
Q Consensus       199 tn~~~----~l~~~l~~rf~~~i~  218 (343)
                      |...+    .-|+++.|||.....
T Consensus       158 tT~~ey~~~e~d~al~rrF~~v~v  181 (387)
T d1qvra2         158 TTLDEYREIEKDPALERRFQPVYV  181 (387)
T ss_dssp             ECHHHHHHHTTCTTTCSCCCCEEE
T ss_pred             cCHHHHHHhcccHHHHHhcccccC
Confidence            86321    237888889987665

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=5.9e-12  Score=105.32  Aligned_cols=110  Identities=11%  Similarity=0.098  Sum_probs=82.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC------CceEEEcCCccccccccchHHHHHHHHHHHHHc----CCcEEEEcc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG------STFFNVLPSSLTSKHYGESEKLVRALFETARAR----APAVIFIDE  156 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~------~~~~~v~~~~l~~~~~~~~~~~i~~~~~~a~~~----~p~il~iDe  156 (343)
                      ..+.++||+||+|+|||++|..+++...      ..++++.+..-   .  -.-..++.+...+...    ...|++|||
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~---~--I~Id~IR~i~~~~~~~~~~~~~KviIId~   87 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---N--IGIDDIRTIKDFLNYSPELYTRKYVIVHD   87 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---C--BCHHHHHHHHHHHTSCCSSSSSEEEEETT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC---C--CCHHHHHHHHHHHhhCcccCCCEEEEEeC
Confidence            3567999999999999999999998763      24777765321   1  1234466666655432    235999999


Q ss_pred             cccccCCCCchhhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCCCCCHHHhccccC
Q psy7809         157 VDAFCSGSREHEATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPWDLDEALKRRFEK  215 (343)
Q Consensus       157 id~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~  215 (343)
                      +|.|         .....++|++.|+..     +.++++|.+|+.++.+.++++||+..
T Consensus        88 ad~l---------~~~aqNaLLK~LEEP-----p~~t~fiLit~~~~~ll~TI~SRC~~  132 (198)
T d2gnoa2          88 CERM---------TQQAANAFLKALEEP-----PEYAVIVLNTRRWHYLLPTIKSRVFR  132 (198)
T ss_dssp             GGGB---------CHHHHHHTHHHHHSC-----CTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred             cccc---------chhhhhHHHHHHhCC-----CCCceeeeccCChhhCHHHHhcceEE
Confidence            9999         446788999999865     45789999999999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.92  E-value=4.1e-10  Score=97.99  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=55.2

Q ss_pred             CCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCccccc
Q psy7809          53 VGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSLTSK  128 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l~~~  128 (343)
                      +.|.+..+.+.+.+.+.++.....        ....|.++||+||||||||++|+++|.+++.+++.++++++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~   71 (273)
T d1gvnb_           4 VNFTDKQFENRLNDNLEELIQGKK--------AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ   71 (273)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHTTCC--------CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred             cccChHHHHHHHHHHHHHHHhccc--------CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH
Confidence            567777777888888877665432        23567899999999999999999999999999999998777543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.91  E-value=1.6e-08  Score=87.54  Aligned_cols=62  Identities=15%  Similarity=0.087  Sum_probs=50.0

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      ...|...-++++|.++..+.|.+.                ..+.++|+||+|+|||+|++.++.+++..+..+++...
T Consensus         4 ~~~p~~~~~~f~GR~~el~~l~~~----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~   65 (283)
T d2fnaa2           4 DTSPKDNRKDFFDREKEIEKLKGL----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF   65 (283)
T ss_dssp             CSSCCCSGGGSCCCHHHHHHHHHT----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCCCCCChhhCCChHHHHHHHHhc----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccc
Confidence            335666778999999988887642                23578999999999999999999999988888766444

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.91  E-value=1.1e-08  Score=88.03  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=57.7

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccccccc--
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSKHYG--  131 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~~~~--  131 (343)
                      ++||.....+.+.+.+....          .....|+|+|++||||+++|+++....   ..+++.++|..+......  
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a----------~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~   70 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAE   70 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHH
Confidence            46777777776666554321          344579999999999999999998765   346888888665432100  


Q ss_pred             ---ch-------HHHHHHHHHHHHHcCCcEEEEcccccc
Q psy7809         132 ---ES-------EKLVRALFETARARAPAVIFIDEVDAF  160 (343)
Q Consensus       132 ---~~-------~~~i~~~~~~a~~~~p~il~iDeid~l  160 (343)
                         ..       ......+|..+   ..+.|||||+|.|
T Consensus        71 lfg~~~~~~~~~~~~~~g~l~~a---~gGtL~l~~i~~L  106 (247)
T d1ny5a2          71 LFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGEL  106 (247)
T ss_dssp             HHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGC
T ss_pred             hcCcccCCcCCcccccCCHHHcc---CCCEEEEeChHhC
Confidence               00       00001123333   2368999999998

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.61  E-value=1e-07  Score=76.97  Aligned_cols=25  Identities=40%  Similarity=0.723  Sum_probs=22.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .|+|.||+|+|||||++.++..+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4899999999999999999998854

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=3e-07  Score=72.60  Aligned_cols=31  Identities=35%  Similarity=0.725  Sum_probs=28.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ++|+|.|||||||||+|+.+|.+++.+++..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~   33 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS   33 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            4689999999999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.17  E-value=4.8e-07  Score=72.93  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      .+.|+|.|||||||||||+++|+.++.+++......
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~   42 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE   42 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHH
Confidence            467999999999999999999999999887665433

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.15  E-value=4.9e-07  Score=72.16  Aligned_cols=31  Identities=52%  Similarity=0.801  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..++|.|||||||||+|+.+|..++.+++.+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~   35 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINV   35 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence            4688999999999999999999999988764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=7.8e-07  Score=71.21  Aligned_cols=37  Identities=32%  Similarity=0.447  Sum_probs=32.4

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCcc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSSL  125 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~l  125 (343)
                      ++-|+|.|||||||||+|++++++++.+++.++...+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~   40 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   40 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence            3568899999999999999999999999999876543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.06  E-value=9.1e-07  Score=70.43  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=28.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +++|.|+||+||||+++.+|+.++.+|+.++
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d   32 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD   32 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence            5889999999999999999999999998753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.02  E-value=1.2e-06  Score=70.20  Aligned_cols=31  Identities=26%  Similarity=0.506  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..++|.|+|||||||+++.+|..+|.+|+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~   33 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence            4588899999999999999999999998865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=1.7e-06  Score=68.98  Aligned_cols=31  Identities=26%  Similarity=0.520  Sum_probs=27.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++|.|+|||||||+++.+|..++.+|+..+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D   33 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   33 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence            3667799999999999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.97  E-value=2.8e-06  Score=67.76  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      +-|+|+|+||+||||+|++++++++..++.++
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~   35 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCeEEee
Confidence            46899999999999999999999998887764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2.3e-06  Score=68.12  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++-++|.|||||||||+++.+++.++.+++..+
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d   38 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD   38 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence            4456888999999999999999999998776554

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.93  E-value=4.8e-05  Score=63.25  Aligned_cols=99  Identities=19%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcCCcccc--------------------------------
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLPSSLTS--------------------------------  127 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~~~l~~--------------------------------  127 (343)
                      +++.++.-++|+|+||+|||+++..++..    -+..+++++..+-..                                
T Consensus        21 GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (242)
T d1tf7a1          21 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPE  100 (242)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSS
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchh
Confidence            34577788999999999999999876532    244555554321100                                


Q ss_pred             ----ccccchHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         128 ----KHYGESEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       128 ----~~~~~~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                          .........+..+........|.++++|.+..+...........+....+.....
T Consensus       101 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~  159 (242)
T d1tf7a1         101 GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK  159 (242)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence                0001123334555666677788999999999887644444444445555555544

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.92  E-value=2.2e-05  Score=66.08  Aligned_cols=98  Identities=21%  Similarity=0.180  Sum_probs=60.7

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----------------------------cccc
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----------------------------HYGE  132 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----------------------------~~~~  132 (343)
                      +++.+...++|+||||+|||+++..+|...   +..+.+++..+-...                            ....
T Consensus        21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (242)
T d1tf7a2          21 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG  100 (242)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhh
Confidence            345677789999999999999999998775   444555543211000                            0011


Q ss_pred             hHHHHHHHHHHHHHcCCcEEEEcccccccCCCCchhhhHHHHHHHhhhcc
Q psy7809         133 SEKLVRALFETARARAPAVIFIDEVDAFCSGSREHEATRRVRCELLSHMD  182 (343)
Q Consensus       133 ~~~~i~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ll~~l~  182 (343)
                      ....+..+........|.++++|.++.+...... .........|...+.
T Consensus       101 ~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~-~~~~~~~~~l~~~~~  149 (242)
T d1tf7a2         101 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSN-NAFRQFVIGVTGYAK  149 (242)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCceeeeecchhhhcCCCH-HHHHHHHHHHHHHHH
Confidence            2344555666667788999999999988764332 222334444444443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.92  E-value=3.8e-06  Score=66.94  Aligned_cols=29  Identities=38%  Similarity=0.544  Sum_probs=25.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      +.+..|+|.||||+||||+++.+|..++.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            34567999999999999999999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=4.8e-05  Score=62.69  Aligned_cols=74  Identities=22%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------ccccchHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------KHYGESEKLVRALFET  143 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------~~~~~~~~~i~~~~~~  143 (343)
                      ..|.-++|.||+|+||||.+-.+|..+   +..+..+.+..+..                    ....+....+......
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA   86 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence            445678899999999999888888665   44555555433321                    1112234455566666


Q ss_pred             HHHcCCcEEEEcccccc
Q psy7809         144 ARARAPAVIFIDEVDAF  160 (343)
Q Consensus       144 a~~~~p~il~iDeid~l  160 (343)
                      ++...-.+++||=....
T Consensus        87 a~~~~~d~ilIDTaGr~  103 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRL  103 (211)
T ss_dssp             HHHTTCSEEEECCCCCG
T ss_pred             HHHcCCCEEEeccCCCc
Confidence            66666689999987544

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.88  E-value=3.8e-06  Score=66.65  Aligned_cols=28  Identities=29%  Similarity=0.508  Sum_probs=24.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      -++|.|||||||||+|+.++..++..++
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~~~~~   31 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLDNSAY   31 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            4889999999999999999999987644

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.87  E-value=5e-06  Score=67.88  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=28.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ..|.-|+|.||||+||||+|+.+|..++...+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~   36 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS   36 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            456678999999999999999999999876554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.86  E-value=4e-06  Score=68.21  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .|..++|.|||||||||+|+.+|..++..++.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is   33 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS   33 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence            35578999999999999999999999887653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.82  E-value=2.8e-06  Score=67.90  Aligned_cols=28  Identities=25%  Similarity=0.246  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .+..|+|+|+||+||||+|+++|..++.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4456889999999999999999999853

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.4e-06  Score=66.35  Aligned_cols=24  Identities=42%  Similarity=0.708  Sum_probs=22.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ++|+|+||||||||+++++++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999999887

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.78  E-value=8.3e-06  Score=65.57  Aligned_cols=30  Identities=27%  Similarity=0.526  Sum_probs=26.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .|+|.|||||||||+|+.+|.+++..++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~   31 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceech
Confidence            478999999999999999999998876654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.78  E-value=9.7e-06  Score=65.87  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..++|.|||||||||+|+.+|.++|..++.+
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~g~~~i~~   34 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   34 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            4577889999999999999999998776553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.75  E-value=9.8e-05  Score=60.66  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=44.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc--------------------cccchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK--------------------HYGESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~--------------------~~~~~~~~i~~~~~~a  144 (343)
                      .+..++|.||+|+||||.+-.+|..+   +..+..+.+......                    ...+....+......+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~   84 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM   84 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence            35678899999999999888888765   444544444332211                    0111233333344444


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ......+|+||=....
T Consensus        85 ~~~~~d~ilIDTaGr~  100 (207)
T d1okkd2          85 KARGYDLLFVDTAGRL  100 (207)
T ss_dssp             HHHTCSEEEECCCCCC
T ss_pred             HHCCCCEEEcCccccc
Confidence            4445579999988654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.75  E-value=6.9e-05  Score=57.13  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      .....+|.+|+|+|||+++-.++.+.+..++.+.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P   41 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP   41 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcC
Confidence            34678999999999999998777777777666654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.74  E-value=7.4e-05  Score=64.45  Aligned_cols=48  Identities=17%  Similarity=0.018  Sum_probs=35.7

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +++|.+.-++.|.+.+....         -.....+.|+|..|+|||+||+.++++.
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~---------~~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceeCcHHHHHHHHHHHHhcc---------CCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            46788888888877764210         0233467899999999999999998763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=9.4e-06  Score=65.41  Aligned_cols=30  Identities=37%  Similarity=0.616  Sum_probs=26.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.|||||||||+|+.+|..++...+.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~   31 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST   31 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence            578999999999999999999998876654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=5.7e-05  Score=64.59  Aligned_cols=78  Identities=26%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc----------------ccccchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS----------------KHYGESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a~  145 (343)
                      ++....-+.|+||||+|||+++-.++...   +..+++++...-..                ......+..+..+-....
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~  129 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  129 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence            34566779999999999999999887554   56667776543211                111223333333333344


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...+++|++|-+..+.+
T Consensus       130 ~~~~~liViDSi~al~~  146 (263)
T d1u94a1         130 SGAVDVIVVDSVAALTP  146 (263)
T ss_dssp             HTCCSEEEEECGGGCCC
T ss_pred             cCCCCEEEEECcccccc
Confidence            56678999999988864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=3.6e-06  Score=68.35  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=24.5

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .+..|+|+|+||+||||+|+.+|..++..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~   46 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCH   46 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            34567899999999999999999988543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.4e-05  Score=65.11  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      |.-|+|.||||+||||+|+.+|+.++...+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i   30 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL   30 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            346899999999999999999999987654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.69  E-value=4e-05  Score=69.83  Aligned_cols=98  Identities=16%  Similarity=0.235  Sum_probs=68.0

Q ss_pred             ccCCCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhC---CceEEE-cCC
Q psy7809          48 QTDTGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHG---STFFNV-LPS  123 (343)
Q Consensus        48 ~~~~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~---~~~~~v-~~~  123 (343)
                      ...+..++++++-.+...+.+.+.+..             +..-+||.||+|+||||+..++..++.   .+++.+ ++.
T Consensus       130 ~~~~~~~l~~LG~~~~~~~~l~~l~~~-------------~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPi  196 (401)
T d1p9ra_         130 KNATRLDLHSLGMTAHNHDNFRRLIKR-------------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  196 (401)
T ss_dssp             TTTTCCCGGGSCCCHHHHHHHHHHHTS-------------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             ccccchhhhhhcccHHHHHHHHHHHhh-------------hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCc
Confidence            344556788888888888888887753             334588899999999999999988874   344544 222


Q ss_pred             cccccc------ccchHHHHHHHHHHHHHcCCcEEEEcccc
Q psy7809         124 SLTSKH------YGESEKLVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       124 ~l~~~~------~~~~~~~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      +..-..      ...........+..+....|+||++.|+.
T Consensus       197 E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiR  237 (401)
T d1p9ra_         197 EFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR  237 (401)
T ss_dssp             CSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred             ccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcC
Confidence            222111      11122236677777888999999999995

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.69  E-value=1.4e-05  Score=64.50  Aligned_cols=30  Identities=30%  Similarity=0.575  Sum_probs=26.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .|+|.|||||||||+|+.+|..++..++.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~   31 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeH
Confidence            478999999999999999999999876654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.5e-05  Score=64.98  Aligned_cols=31  Identities=19%  Similarity=0.371  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..++|.|||||||||+|+.+|+.++...+..
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is~   39 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEeh
Confidence            4578889999999999999999998866553

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.67  E-value=1.6e-05  Score=64.87  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=27.6

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      .+.-|+|.|||||||||+|+.+|..+|...+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is   38 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLS   38 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEe
Confidence            44678999999999999999999999876554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=1.6e-05  Score=63.96  Aligned_cols=30  Identities=27%  Similarity=0.553  Sum_probs=26.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.|||||||||+|+.+|.+++...+..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~   33 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT   33 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence            477889999999999999999998776654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.64  E-value=0.0001  Score=63.09  Aligned_cols=116  Identities=20%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCccccc----------------cccchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTSK----------------HYGESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~~----------------~~~~~~~~i~~~~~~a~  145 (343)
                      ++..++-+.|+||+|||||++|..++...   +..+++++...-...                .....+..+..+-....
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~  132 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR  132 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHh
Confidence            34566678899999999999999887544   566777765432211                11223333333333333


Q ss_pred             HcCCcEEEEcccccccCC-CCch-------hhhHHHHHHHhhhcccCCCCCCCCCEEEEEecCCCC
Q psy7809         146 ARAPAVIFIDEVDAFCSG-SREH-------EATRRVRCELLSHMDGVGTGSGDKGVLVLAATNHPW  203 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~~-~~~~-------~~~~~~~~~ll~~l~~~~~~~~~~~v~vI~ttn~~~  203 (343)
                      ...+.+|++|-+..+.+. .-+.       ....+.+..++..+..+...   .++.+|++..-..
T Consensus       133 ~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~---~~~~vi~tNQv~~  195 (268)
T d1xp8a1         133 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK---TGTAAIFINQVRE  195 (268)
T ss_dssp             TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTT---TCCEEEEEEEC--
T ss_pred             cCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhh---cCCeEEEEeEEee
Confidence            456789999999998852 1111       12344555555555443332   2567777754443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.62  E-value=1.7e-05  Score=64.57  Aligned_cols=31  Identities=16%  Similarity=0.383  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      ..++|.||||+||||+|+.+|..++..++.+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g~~~is~   37 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFELKHLSS   37 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBCCEEEEH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence            4678889999999999999999998776543

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.9e-05  Score=63.33  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      .++|.|||||||||+|+.+|+.++..++..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~   31 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceech
Confidence            478899999999999999999998876653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.60  E-value=0.00014  Score=59.83  Aligned_cols=73  Identities=19%  Similarity=0.105  Sum_probs=39.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------ccccchHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------KHYGESEKLVRALFET  143 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------~~~~~~~~~i~~~~~~  143 (343)
                      +.|.-++|.||+|+||||.+-.+|..+   +..+-.+.+.....                    ....+....+......
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~   89 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK   89 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence            456678899999999999888887665   34444443322210                    1112223334444455


Q ss_pred             HHHcCCcEEEEccccc
Q psy7809         144 ARARAPAVIFIDEVDA  159 (343)
Q Consensus       144 a~~~~p~il~iDeid~  159 (343)
                      +......+|+||=...
T Consensus        90 ~~~~~~d~IlIDTaGr  105 (211)
T d1j8yf2          90 FLSEKMEIIIVDTAGR  105 (211)
T ss_dssp             HHHTTCSEEEEECCCS
T ss_pred             hhccCCceEEEecCCc
Confidence            5555567999997753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=2.3e-05  Score=64.85  Aligned_cols=29  Identities=34%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      -|.|.|||||||+|+|+.||++++.+++.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iS   33 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLD   33 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence            57788999999999999999999887654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=0.00017  Score=59.42  Aligned_cols=27  Identities=33%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..|.-++|.||+|+||||.+-.+|..+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456678999999999999888888665

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.56  E-value=2.4e-05  Score=64.94  Aligned_cols=28  Identities=36%  Similarity=0.668  Sum_probs=24.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      |.+.||||+||||+|+.||.+++.+++.
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~~~is   33 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGFTYLD   33 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence            5577999999999999999999987654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=0.00014  Score=62.11  Aligned_cols=78  Identities=22%  Similarity=0.223  Sum_probs=50.2

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCcccc----------------ccccchHHHHHHHHHHHH
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSSLTS----------------KHYGESEKLVRALFETAR  145 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~l~~----------------~~~~~~~~~i~~~~~~a~  145 (343)
                      ++..+.-+.|+||+|+|||++|-.++..   .+...++++...-..                ......+..+..+-....
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~  135 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR  135 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence            4566778999999999999999877654   366677776544221                111222333332222334


Q ss_pred             HcCCcEEEEcccccccC
Q psy7809         146 ARAPAVIFIDEVDAFCS  162 (343)
Q Consensus       146 ~~~p~il~iDeid~l~~  162 (343)
                      ...+++|++|-+..+++
T Consensus       136 ~~~~~liIiDSi~al~~  152 (269)
T d1mo6a1         136 SGALDIVVIDSVAALVP  152 (269)
T ss_dssp             TTCEEEEEEECSTTCCC
T ss_pred             cCCCCEEEEeccccccc
Confidence            45678999999999885

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00013  Score=65.32  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=17.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia  110 (343)
                      +-++|.||||||||+++..+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHH
Confidence            358899999999999886553

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=2.7e-05  Score=62.35  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=26.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      +.|.-++++|+|||||||+|+.++...+...+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i   43 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV   43 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence            45567899999999999999999888775443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.50  E-value=3.2e-05  Score=59.93  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=24.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      -|+|+||||+||||+|+.++.... .+..++..+
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~   36 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKNP-GFYNINRDD   36 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHST-TEEEECHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC-CCEEechHH
Confidence            478899999999999999976643 344444433

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=6.8e-05  Score=61.31  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      |.-|+++|.||+||||+|+++|+.++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34588999999999999999998874

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.49  E-value=0.00041  Score=56.85  Aligned_cols=73  Identities=25%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcccc--------------------ccccchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSLTS--------------------KHYGESEKLVRALFETA  144 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l~~--------------------~~~~~~~~~i~~~~~~a  144 (343)
                      .++-++|.||+|+||||.+-.+|..+   +..+..+.+.....                    ................+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~   88 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA   88 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHH
Confidence            33457889999999999988888765   45555444432221                    01112222333333344


Q ss_pred             HHcCCcEEEEcccccc
Q psy7809         145 RARAPAVIFIDEVDAF  160 (343)
Q Consensus       145 ~~~~p~il~iDeid~l  160 (343)
                      ......+++||=+...
T Consensus        89 ~~~~~d~vlIDTaGr~  104 (207)
T d1ls1a2          89 RLEARDLILVDTAGRL  104 (207)
T ss_dssp             HHHTCCEEEEECCCCS
T ss_pred             hhccCcceeecccccc
Confidence            4455579999887554

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.31  E-value=9.6e-05  Score=65.12  Aligned_cols=70  Identities=14%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCC--ceEEE-cCCccccc-------cccchHHHHHHHHHHHHHcCCcEEEEccc
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGS--TFFNV-LPSSLTSK-------HYGESEKLVRALFETARARAPAVIFIDEV  157 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~--~~~~v-~~~~l~~~-------~~~~~~~~i~~~~~~a~~~~p~il~iDei  157 (343)
                      ...++++.||+|+||||+.++++.....  .++.+ +..++.-.       ......-....++..+....|+.|++.|+
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi  244 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL  244 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence            3457999999999999999999987742  33333 22332211       01111223566778888889999999999

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.25  E-value=7e-05  Score=59.71  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      +-|+|.|+||+||||+++.++..++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35889999999999999999998753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.17  E-value=0.0013  Score=55.92  Aligned_cols=38  Identities=21%  Similarity=0.144  Sum_probs=28.9

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHH----hCCceEEEcC
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQ----HGSTFFNVLP  122 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~----l~~~~~~v~~  122 (343)
                      ++.++.-++|.|+||+|||+++..+|..    .+.++.++++
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~   72 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence            3466677899999999999999888754    2566666654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0001  Score=57.92  Aligned_cols=30  Identities=27%  Similarity=0.152  Sum_probs=24.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v  120 (343)
                      .+.|+|++|||||||++.++.++   |..+..+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~   36 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   36 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence            47899999999999999999876   4444443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.16  E-value=0.0005  Score=57.57  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+-|.||+|+||||+++.++...
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            445568899999999999999998754

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.14  E-value=0.00041  Score=52.24  Aligned_cols=21  Identities=29%  Similarity=0.129  Sum_probs=17.7

Q ss_pred             CCCceEEEEcCCCchHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAK  107 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~  107 (343)
                      ..+..++|++|+|+|||..+-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            566789999999999997663

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00044  Score=57.43  Aligned_cols=29  Identities=31%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +++.+...++|+||||||||+++..++..
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            44577788999999999999999988754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.11  E-value=0.00016  Score=59.50  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=32.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh----CCceEEEcCCccc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH----GSTFFNVLPSSLT  126 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l----~~~~~~v~~~~l~  126 (343)
                      ..+..|+|+|.||+||||+|++++..+    +.+++.++...+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            455679999999999999999999765    6678888776544

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.09  E-value=0.00016  Score=60.52  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      +.++++.+|+|+|||.++-..+...   +...+.+.+
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~P   94 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP   94 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence            4679999999999998766554332   445555543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.03  E-value=0.0001  Score=58.95  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      -++|.|+||+||||+++.++..++.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4688999999999999999998854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.03  E-value=0.00083  Score=55.73  Aligned_cols=27  Identities=33%  Similarity=0.602  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+-|.||+|+||||+++.++...
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            455568899999999999999999765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00024  Score=57.42  Aligned_cols=28  Identities=39%  Similarity=0.632  Sum_probs=24.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      .|+|.||+|+|||+|++.++.+....+.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~   29 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIFG   29 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCcee
Confidence            4889999999999999999998865543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0015  Score=55.06  Aligned_cols=28  Identities=36%  Similarity=0.529  Sum_probs=24.1

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.++..+.|.||+|+|||||++.++..+
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3566789999999999999999998655

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00025  Score=57.12  Aligned_cols=27  Identities=37%  Similarity=0.630  Sum_probs=23.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGSTF  117 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~~  117 (343)
                      .|+|+||+|+|||+|++.++.+....+
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~   29 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcce
Confidence            489999999999999999999875443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0017  Score=54.28  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=23.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++..+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            556679999999999999999998765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00098  Score=55.69  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+.-+-|.||+|||||||++.++...
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            455668899999999999999998654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.86  E-value=0.0012  Score=55.75  Aligned_cols=27  Identities=19%  Similarity=0.253  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|+|||||++.++..+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            566789999999999999999998654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.00056  Score=54.75  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=21.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      -|-|.||+|+||||+|+.++..++.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4568999999999999999987753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00034  Score=56.80  Aligned_cols=30  Identities=27%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +++.++.-++|+||||+|||+++..+|...
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            455777889999999999999999998764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.73  E-value=0.0042  Score=50.13  Aligned_cols=19  Identities=47%  Similarity=0.646  Sum_probs=16.4

Q ss_pred             CceEEEEcCCCchHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAK  107 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~  107 (343)
                      ..++++.+|+|+|||+++-
T Consensus        40 ~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHH
Confidence            4579999999999998864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0063  Score=51.26  Aligned_cols=26  Identities=35%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +..-.+|+|+||+|||+++-.+|..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999988653

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.66  E-value=0.005  Score=49.93  Aligned_cols=51  Identities=24%  Similarity=0.312  Sum_probs=36.5

Q ss_pred             cccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          57 DIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        57 ~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      ++.-.+.+.+.+..++.              . ...+|.+|+|+|||.++-.++.+++.+.+.+.+
T Consensus        68 ~~~Lr~yQ~eav~~~~~--------------~-~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p  118 (206)
T d2fz4a1          68 EISLRDYQEKALERWLV--------------D-KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP  118 (206)
T ss_dssp             CCCCCHHHHHHHHHHTT--------------T-SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred             CCCcCHHHHHHHHHHHh--------------C-CCcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence            34455667777765442              1 245788999999999999999988877666644

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.62  E-value=0.00053  Score=57.31  Aligned_cols=30  Identities=33%  Similarity=0.356  Sum_probs=25.6

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +++....-++|+||||+|||+++-.++...
T Consensus        31 GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          31 GGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            445777789999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00076  Score=56.28  Aligned_cols=30  Identities=27%  Similarity=0.261  Sum_probs=25.6

Q ss_pred             ccCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          84 GILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        84 ~~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +++.++.-++|+||||+|||+++..+|...
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            455777789999999999999999998653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0082  Score=49.74  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+.++|+||..+|||++.|.++--
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            356899999999999999999743

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.00066  Score=54.15  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=22.1

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .-++|.||+|+||||+++.+..+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4578999999999999999998864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.55  E-value=0.0073  Score=49.71  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .++|+||..+|||++.|.++-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            5899999999999999998743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00082  Score=54.96  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      --|-|.||+|+||||+++.++..++..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            346689999999999999999998753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.40  E-value=0.0021  Score=51.76  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=27.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ..-+.++|+|||+||||+++.++++-++..++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi   82 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   82 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence            44568999999999999999999999875443

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0046  Score=47.57  Aligned_cols=22  Identities=32%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .|+|.|+||+|||+|..++...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999743

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.0014  Score=50.93  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=25.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .++.-|+|.|+=|+|||+++|.+++.+|..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            344568899999999999999999999853

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.017  Score=46.34  Aligned_cols=32  Identities=28%  Similarity=0.242  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVL  121 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~  121 (343)
                      .++++.-|+|+|||.++...........+.+.
T Consensus        41 ~~vlv~apTGsGKT~~~~~~~~~~~~~~~~v~   72 (206)
T d1oywa2          41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS   72 (206)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred             CCEEEEcCCCCCCcchhhhhhhhccCceEEec
Confidence            57999999999999987655544444444443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.26  E-value=0.0014  Score=51.29  Aligned_cols=30  Identities=23%  Similarity=0.144  Sum_probs=23.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNV  120 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v  120 (343)
                      -+-+.|++|||||||+..++.++   |..+..+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi   35 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV   35 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            35699999999999999999876   4445444

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.0081  Score=47.15  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .|.|.|.+|+|||+|++++...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999854

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.20  E-value=0.002  Score=51.47  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      |.-+-|+|++|+||||+|+.+ .+.|.+++..
T Consensus         3 p~IIgitG~~gSGKstva~~l-~~~g~~~~~~   33 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALL-RSWGYPVLDL   33 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHH-HHTTCCEEEH
T ss_pred             CEEEEEECCCCCCHHHHHHHH-HHCCCeEEEc
Confidence            344568999999999999998 5678776643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.14  E-value=0.0014  Score=54.20  Aligned_cols=29  Identities=21%  Similarity=0.117  Sum_probs=25.0

Q ss_pred             cCCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          85 ILRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        85 ~~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ++.++.-++|+|+||+|||+++..+|...
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34666789999999999999999998765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=51.70  Aligned_cols=25  Identities=20%  Similarity=0.587  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +.++|.||+|+||++|++.+..+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            4589999999999999999997653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.10  E-value=0.0022  Score=50.73  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=25.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFFN  119 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~  119 (343)
                      ...++||.|++|+|||++|-.+... |..++.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~   43 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIA   43 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence            4578999999999999999988865 655443

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.015  Score=46.97  Aligned_cols=53  Identities=21%  Similarity=0.065  Sum_probs=31.7

Q ss_pred             CCCcccccHHHHHHHHHHH-hccccChHHHhccCCCCceEEEEcCCCchHHHHH
Q psy7809          54 GWDDIAGLDNVKQIFKETL-LLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      +|+++.-.+.+.+.|.+.- ..|..-+...-..+..++.+++.+|+|+|||+..
T Consensus         2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay   55 (206)
T d1s2ma1           2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAF   55 (206)
T ss_dssp             CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHH
T ss_pred             ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhh
Confidence            5788777788888887641 1111111110011223467999999999999543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.02  E-value=0.0013  Score=52.86  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=26.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ..|.-|.|.|+.|+||||+++.+++.++...+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            44556889999999999999999999876444

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0075  Score=51.49  Aligned_cols=39  Identities=15%  Similarity=0.173  Sum_probs=27.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh------CCceEEEcCCcc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH------GSTFFNVLPSSL  125 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l------~~~~~~v~~~~l  125 (343)
                      ..|--|-|.|++||||||++..+...+      ...+..++..++
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            344456688999999999999887665      234555555444

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.044  Score=44.08  Aligned_cols=52  Identities=13%  Similarity=0.043  Sum_probs=32.3

Q ss_pred             CCCcccccHHHHHHHHHHHhccccChHHHh--ccCCCCceEEEEcCCCchHHHHH
Q psy7809          54 GWDDIAGLDNVKQIFKETLLLPKLMPQLFK--GILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~--~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      +|+|+.-.+++.+.|.+.- +....+-...  ..+..++.+++..|+|+|||...
T Consensus         2 ~F~dl~L~~~l~~~l~~~g-~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~   55 (207)
T d1t6na_           2 GFRDFLLKPELLRAIVDCG-FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF   55 (207)
T ss_dssp             CSTTSCCCHHHHHHHHHTT-CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred             CccccCcCHHHHHHHHHCC-CCCCCHHHHHHHHHHHcCCCeEEEecccccccccc
Confidence            5888877778888887641 2111111111  11234578999999999998644

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.92  E-value=0.0021  Score=49.20  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|+||+|||+|++.++..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0037  Score=50.81  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .-++|.||+|+|||+|.+.+.....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3478999999999999999998764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.86  E-value=0.042  Score=43.52  Aligned_cols=32  Identities=34%  Similarity=0.567  Sum_probs=22.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHH----HhCCceEEEcC
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS----QHGSTFFNVLP  122 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~----~l~~~~~~v~~  122 (343)
                      ++|+++|+|+|||.++-.++.    ..+..++.+.+
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P   60 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP   60 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence            578999999999987665553    23455555544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.84  E-value=0.0028  Score=50.20  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ...++||.|++|+|||++|-.+... |..++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lv   43 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFV   43 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence            4578999999999999999888754 55444

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.81  E-value=0.0035  Score=49.23  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      ...+|||.|++|+|||++|-.+... |..++
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li   43 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLV   43 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            4578999999999999999887765 55433

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.005  Score=53.24  Aligned_cols=39  Identities=15%  Similarity=0.088  Sum_probs=29.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC-----CceEEEcCCcc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG-----STFFNVLPSSL  125 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~-----~~~~~v~~~~l  125 (343)
                      +.|.-|-|.|++|+||||+|+.++..+.     ..+..++..++
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            4555677999999999999999999874     34555555554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.64  E-value=0.0026  Score=52.70  Aligned_cols=27  Identities=19%  Similarity=0.441  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+..+-|.||+|||||||.+.++...
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            555678899999999999999998754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0069  Score=49.25  Aligned_cols=31  Identities=19%  Similarity=0.148  Sum_probs=24.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEEc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNVL  121 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~  121 (343)
                      -|.|.|+.|+||||+++.+++.+   |.+++.+.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            46677999999999999999876   55565553

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.077  Score=43.51  Aligned_cols=38  Identities=24%  Similarity=0.179  Sum_probs=28.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSS  124 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~  124 (343)
                      ..+...||+|..|+|||.++-..+...   |..+..+.+..
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~  114 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT  114 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHH
Confidence            345688999999999999988776543   66666665533

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0034  Score=52.02  Aligned_cols=27  Identities=26%  Similarity=0.476  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+-|.||+|||||||.+.++...
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            555678899999999999999998755

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.54  E-value=0.069  Score=44.70  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=27.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH---hCCceEEEcCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ---HGSTFFNVLPSS  124 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~---l~~~~~~v~~~~  124 (343)
                      ..+...||+|..|||||-++-..+..   .|..+..+-+.+
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~  142 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTS  142 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCH
T ss_pred             cCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehH
Confidence            34567899999999999998877543   366666665543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.54  E-value=0.0037  Score=51.59  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ++|.|++|+|||||++++.+.+
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            6899999999999999998765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.53  E-value=0.0032  Score=51.06  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      |-|+|+.||||||+|+.+. ++|.+++..
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~~vida   32 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGVPLVDA   32 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCeEEEc
Confidence            4589999999999999886 678887754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0054  Score=50.68  Aligned_cols=30  Identities=17%  Similarity=0.129  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTFF  118 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~~  118 (343)
                      |+-+.|.|+-||||||+++.++..+....+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            566889999999999999999999875443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.50  E-value=0.0066  Score=48.87  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=25.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      |.|.|+.|+||||+++.+++.+   |.+++.+..
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~   36 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence            6788999999999999999876   556666543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.036  Score=48.10  Aligned_cols=70  Identities=26%  Similarity=0.351  Sum_probs=43.1

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CC--ceEEEcCCcccc----------------------------ccccchHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GS--TFFNVLPSSLTS----------------------------KHYGESEK  135 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~--~~~~v~~~~l~~----------------------------~~~~~~~~  135 (343)
                      ...|=|.||||+|||||+.+++..+   |.  -++.+++..-.+                            ...++...
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~  133 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ  133 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccchh
Confidence            3457799999999999999998765   22  244444432110                            11233444


Q ss_pred             HHHHHHHHHHHcCCcEEEEcccc
Q psy7809         136 LVRALFETARARAPAVIFIDEVD  158 (343)
Q Consensus       136 ~i~~~~~~a~~~~p~il~iDeid  158 (343)
                      ........+.....++++++.+.
T Consensus       134 ~~~~~~~~~~~~g~d~iliEtvG  156 (327)
T d2p67a1         134 RARELMLLCEAAGYDVVIVETVG  156 (327)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEEC
T ss_pred             hhhHHHHHHHhcCCCeEEEeecc
Confidence            55566666666677888888774

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0036  Score=50.92  Aligned_cols=28  Identities=32%  Similarity=0.499  Sum_probs=23.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNV  120 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v  120 (343)
                      |-|+|++||||||+++.+. ++|.+++..
T Consensus         6 IgitG~igSGKStv~~~l~-~~G~~vida   33 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA-DLGINVIDA   33 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HTTCEEEEH
T ss_pred             EEEECCCcCCHHHHHHHHH-HCCCcEEEc
Confidence            5589999999999999875 778776653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0082  Score=48.93  Aligned_cols=33  Identities=21%  Similarity=0.085  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      .-|.|.|+-|+||||+++.+++.+......+..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~   36 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF   36 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTTSEEEEES
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEE
Confidence            347788999999999999999999776665543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.40  E-value=0.0033  Score=52.91  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++..+.|.||+|||||||++.++..+
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            566779999999999999999998755

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.37  E-value=0.0029  Score=51.33  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+.|.||.|+|||||.+.++..+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            455668899999999999999999765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.0047  Score=49.87  Aligned_cols=23  Identities=35%  Similarity=0.493  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ++|+|.|++|+|||+|..++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999999763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.31  E-value=0.0047  Score=51.33  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++..+-|.||+|+|||||.+.++..+.
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4556788999999999999999997653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.29  E-value=0.0037  Score=52.04  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+..+-|.||+||||||+++.++...
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            555678899999999999999999754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0056  Score=49.59  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .-|.|.|+.|+||||+++.+++.+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            347788999999999999999877

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.23  E-value=0.0041  Score=51.96  Aligned_cols=28  Identities=25%  Similarity=0.339  Sum_probs=23.9

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.++.-+.|.||+|+|||||++.++..+
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3566678999999999999999998654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.22  E-value=0.0064  Score=46.68  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..++|.|+||+|||+|.+++...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.18  E-value=0.0047  Score=51.29  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      -+.|.||+|+||||+++.++..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35578999999999999999765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.18  E-value=0.0055  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=17.0

Q ss_pred             CceEEEEcCCCchHHHHH-HHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLA-KAVAS  111 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la-~~ia~  111 (343)
                      ..+++|.|+||||||+++ ..++.
T Consensus        14 ~~~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             SSEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEeeCCccHHHHHHHHHHH
Confidence            356899999999999764 44443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0054  Score=46.77  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ++|.|+||+|||+|+..+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.0052  Score=52.49  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             CCCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          86 LRPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      +.++.-+.|.||+|+|||||++.++..+.
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            46667789999999999999999997663

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.12  E-value=0.0098  Score=51.18  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             CCceEEEEcCCCchHHHHH-HHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLA-KAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la-~~ia~~  112 (343)
                      +...+++.|+||||||+++ ..++..
T Consensus        23 ~~g~~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          23 TEGPLLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             CSSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCccHHHHHHHHHHHH
Confidence            3456899999999999755 444443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0059  Score=47.78  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -+++.|++|+|||+|+..+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999998754

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.05  E-value=0.035  Score=44.74  Aligned_cols=60  Identities=15%  Similarity=0.183  Sum_probs=36.2

Q ss_pred             CCCCcccccHHHHHHHHHHHh-ccccCh-HHHhccCCCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          53 VGWDDIAGLDNVKQIFKETLL-LPKLMP-QLFKGILRPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~-~~~~~~-~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .+|+|+.-.+++.+.|.+.-. .|..-+ ......+.....+++..|+|+|||..+-....+
T Consensus         4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1           4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred             cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccc
Confidence            478888666778888766421 111111 111122233358999999999999977655543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.04  E-value=0.0065  Score=47.48  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      +...-++|.|++|+|||+|..++..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3445699999999999999999854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.93  E-value=0.0061  Score=47.13  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .|+|.|++|+|||+|++.+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999998653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.89  E-value=0.0072  Score=46.76  Aligned_cols=21  Identities=14%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|++|+|||+|+..+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999885

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0075  Score=46.77  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|++|+|||+|+..+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999864

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=94.82  E-value=0.049  Score=46.05  Aligned_cols=19  Identities=37%  Similarity=0.403  Sum_probs=16.4

Q ss_pred             CCCCceEEEEcCCCchHHH
Q psy7809          86 LRPWRGILLFGPPGTGKTL  104 (343)
Q Consensus        86 ~~~~~~vll~Gp~GtGKT~  104 (343)
                      +...+.+++.+|+|+|||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            3566789999999999995

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.81  E-value=0.02  Score=47.90  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ....|+|.|.+|+|||+++.+|..+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4468999999999999999999754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.78  E-value=0.0079  Score=46.80  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -+++.|++|+|||+|+..+...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3889999999999999999864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.77  E-value=0.007  Score=50.04  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=22.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      -|-|+|+.||||||+|+.++..+|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g~~   28 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYSAV   28 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCe
Confidence            36789999999999999999887743

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.008  Score=46.77  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|++|+|||+|++.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.76  E-value=0.0067  Score=51.05  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..+.-+-|.||+|+|||||+++++...
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            555678899999999999999998654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0083  Score=46.48  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|.+|+|||+|++.+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.73  E-value=0.0074  Score=47.02  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .-..|+|.|.+|+|||+|+.++...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3357999999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0081  Score=46.82  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=19.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|++|+|||+|++.+...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999863

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.71  E-value=0.0086  Score=46.30  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .|+|.|++|+|||+|+..+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.68  E-value=0.015  Score=49.18  Aligned_cols=30  Identities=40%  Similarity=0.460  Sum_probs=25.6

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      ..-+.++|+||+++|||+++.+++..+|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            444678999999999999999999998653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.0095  Score=47.75  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=20.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .|+|.|+||+|||+|..++...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0089  Score=46.54  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|.+|+|||+|++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.57  E-value=0.0089  Score=46.52  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=19.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .|.|.|++|+|||+|++++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999974

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0088  Score=47.26  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|++|+|||+|++.+..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            378999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.57  E-value=0.053  Score=46.88  Aligned_cols=70  Identities=26%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh---CC--ceEEEcCCcccc----------------------------ccccchHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH---GS--TFFNVLPSSLTS----------------------------KHYGESEKL  136 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l---~~--~~~~v~~~~l~~----------------------------~~~~~~~~~  136 (343)
                      .-+=|.||||+|||||..+++..+   +.  -++.++++.-..                            ...+.....
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~  131 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK  131 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchhHH
Confidence            447799999999999999998764   22  345555432211                            011223444


Q ss_pred             HHHHHHHHHHcCCcEEEEccccc
Q psy7809         137 VRALFETARARAPAVIFIDEVDA  159 (343)
Q Consensus       137 i~~~~~~a~~~~p~il~iDeid~  159 (343)
                      .......+.....+++||.-+..
T Consensus       132 ~~~~i~~~~~~g~d~iiiETVG~  154 (323)
T d2qm8a1         132 TRETMLLCEAAGFDVILVETVGV  154 (323)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECSS
T ss_pred             HHHHHHhhccCCCCeEEEeehhh
Confidence            55555556666667888887743

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.0095  Score=46.18  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|.+|+|||+|++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0052  Score=50.63  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=23.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      +-|.|.|+.|+||||+++.+++.+...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~~   29 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCEDW   29 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTTE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            457899999999999999999988543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.01  Score=46.44  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -+++.|++|+|||+|+..+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.01  Score=45.90  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=19.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~  112 (343)
                      +++.|++|+|||+|++.++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.011  Score=46.01  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|++.|.+|+|||+|+..+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999854

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.01  Score=46.04  Aligned_cols=20  Identities=30%  Similarity=0.559  Sum_probs=18.5

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~  111 (343)
                      |++.|.+|+|||+|+..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.011  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|.+|+|||+|++.+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.35  E-value=0.011  Score=45.46  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|++|+|||+|+..+...
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999853

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.33  E-value=0.012  Score=45.94  Aligned_cols=20  Identities=30%  Similarity=0.617  Sum_probs=18.6

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~  111 (343)
                      ++|.|++|+|||+|+..+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.011  Score=45.70  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|++|+|||+|+..+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.011  Score=45.67  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .-|+|.|++|+|||+|+..+...
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35889999999999999998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.30  E-value=0.012  Score=46.44  Aligned_cols=20  Identities=30%  Similarity=0.627  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~  111 (343)
                      |++.|.+|||||+|+..+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999986

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.013  Score=45.35  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|.+|+|||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.013  Score=45.22  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~  111 (343)
                      |+|.|.+|+|||+|++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999975

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.16  E-value=0.012  Score=46.11  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .|+|.|+||+|||+|..++..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999975

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.013  Score=45.26  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|.+|+|||+|++.+...
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.013  Score=45.88  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|++.|++|+|||+|+..+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.12  E-value=0.011  Score=45.97  Aligned_cols=22  Identities=50%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCchHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .-+++.|++|+|||+|+..+..
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4599999999999999998854

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.014  Score=45.34  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -+++.|++|+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999999876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.013  Score=45.62  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|.+|+|||+|+..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.013  Score=45.39  Aligned_cols=20  Identities=45%  Similarity=0.893  Sum_probs=18.3

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~  111 (343)
                      |+|.|++|+|||+|++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999999864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.05  E-value=0.015  Score=45.21  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|.+|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.015  Score=45.54  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -+++.|.+|+|||+|++++..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.99  E-value=0.014  Score=49.79  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=23.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCCcc
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPSSL  125 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~~l  125 (343)
                      -|-+.|++|+||||+++++...+   +.....+...++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            57799999999999999998776   445445554443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.016  Score=45.20  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|++|+|||+|+..+...
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988763

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.90  E-value=0.043  Score=41.26  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             EEEEcCCCchHHH-HHHHHH--HHhCCceEEEcC
Q psy7809          92 ILLFGPPGTGKTL-LAKAVA--SQHGSTFFNVLP  122 (343)
Q Consensus        92 vll~Gp~GtGKT~-la~~ia--~~l~~~~~~v~~  122 (343)
                      -+++||-.+|||+ |.+.+-  ...+..++.+.+
T Consensus         5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp   38 (139)
T d2b8ta1           5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP   38 (139)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence            3688999999999 666653  334666665544

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.016  Score=45.16  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=18.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|++|+|||+|+..++.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.017  Score=45.39  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|.+|+|||+|++.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.017  Score=44.68  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|++|+|||+|+..+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=0.018  Score=44.74  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|++|+|||+|+..+...
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.68  E-value=0.014  Score=47.81  Aligned_cols=29  Identities=21%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCce
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGSTF  117 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~~  117 (343)
                      ....+|.|++|+|||+|..++........
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T  123 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRV  123 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhc
Confidence            35678999999999999999976544433

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.67  E-value=0.018  Score=45.28  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|.+|+|||+|++.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999863

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.66  E-value=0.013  Score=48.62  Aligned_cols=28  Identities=29%  Similarity=0.281  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++.-+-|.||.|+|||||.++++..+.
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4455688999999999999999987654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.64  E-value=0.018  Score=45.85  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~  112 (343)
                      |+|.|++|+|||+|+..+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.63  E-value=0.011  Score=46.02  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCchHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ...|++.|++|+|||+|++.+..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999999874

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.56  E-value=0.017  Score=45.89  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=19.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .|.|.|+||+|||||..++..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            589999999999999999974

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.019  Score=45.32  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|.+|+|||+|++.+...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4889999999999999998763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.50  E-value=0.018  Score=47.77  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .++.-+-|.||.|+|||||.++++..+.
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4555677999999999999999987653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.02  Score=45.33  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|++|+|||+|+..+...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.40  E-value=0.013  Score=46.03  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=19.8

Q ss_pred             CCceEEEEcCCCchHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      .-.-++|.|++|+|||+|++.+.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            33569999999999999999885

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.30  E-value=0.016  Score=48.47  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .++.-+-|.||.|+|||||+++++..+
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            455568899999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.23  E-value=0.013  Score=45.70  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=8.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      -|+|.|.+|+|||+|++++..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.012  Score=45.90  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=18.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -+++.|++|+|||+|+.+++..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.032  Score=50.09  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=26.2

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      .+|+++.|++|+|||++++.+...+   +..++.+++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            3689999999999999988765433   566666654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.016  Score=47.76  Aligned_cols=26  Identities=35%  Similarity=0.483  Sum_probs=22.1

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      ..+.-+-|.||.|+|||||.+.++..
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45566889999999999999999863

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.94  E-value=0.24  Score=41.52  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      -++|-|.|..|+|||+|+.++....+
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            36899999999999999999976554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.76  E-value=0.012  Score=45.06  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .|.|.|.||+|||+|+.++..+
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.69  E-value=0.012  Score=48.46  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHhCCc
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQHGST  116 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l~~~  116 (343)
                      .+..+|.|++|+|||+|+.++..+....
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~  124 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLR  124 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhh
Confidence            3456788999999999999997654443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.67  E-value=0.21  Score=38.70  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      +|-+.|.|++|||||..++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            688999999999999999974

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.64  E-value=0.011  Score=46.67  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhC
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      .+|+||.|+|||++..||...++
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            57889999999999999987764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.032  Score=43.30  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .|.|.|.||+|||+|..++.+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999975

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.47  E-value=0.025  Score=49.19  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      .-|.|.|+-|+||||+++.+++.++.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            35788999999999999999998853

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.42  E-value=0.032  Score=44.12  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=18.2

Q ss_pred             eEEEEcCCCchHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia  110 (343)
                      -++|.|.+|+|||+|+..+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999993

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.16  Score=41.20  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .-.+|.|.-|+||||+.+.+.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            347899999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.29  E-value=0.046  Score=42.68  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      .-.|.|.|.+|+|||+|+.++...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            346889999999999999999753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.10  E-value=0.028  Score=44.02  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=18.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .|-|.|+||+|||+|..++..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.06  E-value=0.031  Score=43.63  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~  111 (343)
                      .|.|.|.||+|||+|+.++..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999964

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.048  Score=42.55  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -.+++.|++|+|||+|+..+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.022  Score=44.32  Aligned_cols=22  Identities=14%  Similarity=0.185  Sum_probs=19.5

Q ss_pred             CceEEEEcCCCchHHHHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVA  110 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia  110 (343)
                      ...|.|.|+|++|||+|.+++.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3569999999999999999884

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.56  E-value=0.045  Score=44.47  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -|+|.|+.|+|||+|++.+...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998644

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.11  Score=43.63  Aligned_cols=37  Identities=24%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      +.|+-+++.|-=|+||||++-++|..+   |..+.-+++.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            457788899999999999999998766   6777666653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.42  E-value=0.052  Score=42.62  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      -++|.|..|+|||+|++.+...-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999997553

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.11  Score=41.38  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             ceEEEEcC-CCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          90 RGILLFGP-PGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        90 ~~vll~Gp-~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      +.++++|- +|+|||+++-.+|..+   |..+..++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            45789998 5999999999988765   677777764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.10  E-value=0.041  Score=47.79  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      |.|.|+-|+||||+++.+++.+..
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            678899999999999999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.40  E-value=0.099  Score=46.15  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      --+|+||.|+|||++..||+..+|.
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3578999999999999999876653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.10  E-value=0.045  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      -.+|+||.|+|||++..|++-.++
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            357999999999999999987654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.03  E-value=0.057  Score=46.72  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=19.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHhCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQHGS  115 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l~~  115 (343)
                      -|.|.|+-|+||||+++.+++.++.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            3678899999999999999987754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.98  E-value=0.078  Score=41.33  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHH
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      -++|.|..|+|||++++.+...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4799999999999999988643

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.1  Score=42.32  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=34.3

Q ss_pred             CCCCCcccccHHHHHHHHHHHh-ccccChHHHhccCCCCceEEEEcCCCchHHHH
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLL-LPKLMPQLFKGILRPWRGILLFGPPGTGKTLL  105 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l  105 (343)
                      ..+|+++.-.+.+.+.|.+.-. .|..-+...-..+..++.+++..|+|||||..
T Consensus        16 ~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTla   70 (222)
T d2j0sa1          16 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTAT   70 (222)
T ss_dssp             CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred             CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhh
Confidence            4579999878888888887522 11111111111123457899999999999963

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.29  E-value=0.13  Score=43.52  Aligned_cols=26  Identities=31%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+.-++|.|++|+|||+|+..+++..
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            44568999999999999999998754

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.91  E-value=0.23  Score=39.73  Aligned_cols=56  Identities=16%  Similarity=-0.007  Sum_probs=35.9

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHH
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAK  107 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~  107 (343)
                      +-.+|+++.-.+++.+.|.+.-... ..+-....  .+..++.+++..|+|+|||...-
T Consensus         8 ~~~sF~~l~l~~~l~~~L~~~g~~~-pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~   65 (212)
T d1qdea_           8 VVYKFDDMELDENLLRGVFGYGFEE-PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS   65 (212)
T ss_dssp             CCCCGGGGTCCHHHHHHHHHHTCCS-CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred             cccChhhCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHcCCCEEeecccccchhhhhH
Confidence            3478999977788888887643221 11111111  12345789999999999998543

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.071  Score=42.77  Aligned_cols=54  Identities=20%  Similarity=0.044  Sum_probs=32.4

Q ss_pred             CCCCcccccHHHHHHHHHHHh-ccccChHHHhccCCCCceEEEEcCCCchHHHHH
Q psy7809          53 VGWDDIAGLDNVKQIFKETLL-LPKLMPQLFKGILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        53 ~~~~~l~G~~~~k~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      .+|+++.-.+++.+.|.+.-. .|..-+...-..+-.++.+++..|+|+|||...
T Consensus         3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlay   57 (206)
T d1veca_           3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAY   57 (206)
T ss_dssp             SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHH
T ss_pred             CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCcccccccc
Confidence            468888777788887776421 111111110111234578999999999999643

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.93  E-value=0.16  Score=40.44  Aligned_cols=52  Identities=15%  Similarity=0.120  Sum_probs=29.7

Q ss_pred             CCCcccccHHHHHHHHHHHhc-ccc-ChHHHhccCCCCceEEEEcCCCchHHHHH
Q psy7809          54 GWDDIAGLDNVKQIFKETLLL-PKL-MPQLFKGILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        54 ~~~~l~G~~~~k~~l~~~~~~-~~~-~~~~~~~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      +|+++.-.+.+.+.|.+.-.. |.. +...... +-.+..+++..|+|||||...
T Consensus         2 ~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~-~l~G~dvii~a~TGSGKTlay   55 (209)
T d1q0ua_           2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPG-ALRGESMVGQSQTGTGKTHAY   55 (209)
T ss_dssp             CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHHTCCEEEECCSSHHHHHHH
T ss_pred             ccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCeEeecccccccceee
Confidence            577776667777777653211 100 0011111 123468999999999999743

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.62  E-value=0.18  Score=42.12  Aligned_cols=25  Identities=40%  Similarity=0.656  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHG  114 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~  114 (343)
                      ++|-+.|+.|+|||||+.++....+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            5788999999999999999976543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.61  E-value=0.17  Score=44.89  Aligned_cols=25  Identities=16%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             CCCceEEEEcCCCchHHHHHHHHHH
Q psy7809          87 RPWRGILLFGPPGTGKTLLAKAVAS  111 (343)
Q Consensus        87 ~~~~~vll~Gp~GtGKT~la~~ia~  111 (343)
                      ..+.+|.|.|.||+|||+|..++..
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3456899999999999999999964

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=87.46  E-value=0.6  Score=41.34  Aligned_cols=53  Identities=21%  Similarity=0.225  Sum_probs=40.3

Q ss_pred             cccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCCc
Q psy7809          59 AGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPSS  124 (343)
Q Consensus        59 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~~  124 (343)
                      +-+..+++.|..-+.             ...+..+|.|-+|+|||.++..++...+.+++.|....
T Consensus        14 gDQP~aI~~l~~~l~-------------~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~   66 (413)
T d1t5la1          14 GDQPQAIAKLVDGLR-------------RGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNK   66 (413)
T ss_dssp             TTHHHHHHHHHHHHH-------------HTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSH
T ss_pred             CCCHHHHHHHHHHHh-------------cCCCcEEEeCCCCcHHHHHHHHHHHHhCCCEEEEeCCH
Confidence            345556666665553             23356889999999999999999999999998886543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.15  E-value=0.16  Score=40.54  Aligned_cols=25  Identities=28%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHH
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQ  112 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~  112 (343)
                      |.-++.+.|.+++|||||+.++...
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHH
Confidence            3457899999999999999999644

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.41  E-value=0.24  Score=35.86  Aligned_cols=26  Identities=19%  Similarity=0.060  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          88 PWRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        88 ~~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      .+-.++|.|-+|+||+++|+++...+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999997665

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.49  Score=39.02  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .+-++++|-=|+||||++-.+|..+   |..+..+++.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3456777999999999887776554   6777777664

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.29  Score=39.37  Aligned_cols=55  Identities=15%  Similarity=-0.009  Sum_probs=34.3

Q ss_pred             CCCCCcccccHHHHHHHHHHHhccccChHHHhc--cCCCCceEEEEcCCCchHHHHHH
Q psy7809          52 GVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKG--ILRPWRGILLFGPPGTGKTLLAK  107 (343)
Q Consensus        52 ~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~  107 (343)
                      -.+|+++.-.+.+.+.|.+.-.. ...+-....  .+..++.+++..|+|||||...-
T Consensus        11 i~sF~~l~L~~~l~~~L~~~g~~-~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayl   67 (218)
T d2g9na1          11 VDSFDDMNLSESLLRGIYAYGFE-KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA   67 (218)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHTCC-SCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHH
T ss_pred             cCCHHHCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhh
Confidence            35899987778888888654221 111111111  12344689999999999997553

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.13  E-value=0.2  Score=42.71  Aligned_cols=19  Identities=42%  Similarity=0.569  Sum_probs=15.7

Q ss_pred             CceEEEEcCCCchHHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLAK  107 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~  107 (343)
                      ....||+|.+|||||||..
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            3457999999999999764

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=0.14  Score=44.13  Aligned_cols=52  Identities=12%  Similarity=0.127  Sum_probs=28.8

Q ss_pred             CCCCCCcccccHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHH
Q psy7809          51 TGVGWDDIAGLDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        51 ~~~~~~~l~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      ...+|+.+.+.+.--+.+.+.+..|+.. .++.   .....++-||++|+|||+..
T Consensus        42 ~~f~FD~vf~~~~~q~~vf~~~~~~lv~-~~l~---G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          42 KPYAFDRVFQSSTSQEQVYNDCAKKIVK-DVLE---GYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             EEEECSEEECTTCCHHHHHHHHTHHHHH-HHHT---TCCEEEEEECSTTSSHHHHH
T ss_pred             ceeECCEEECCCCCHHHHHHHHHHHHHH-HHHc---CCCcceeeecccCCCCceec
Confidence            3456777766443333333322222111 1111   23457899999999999986

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=84.53  E-value=0.9  Score=40.10  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCchHHHHHHHHHHHhCCceEEEcCC
Q psy7809          90 RGILLFGPPGTGKTLLAKAVASQHGSTFFNVLPS  123 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~~  123 (343)
                      ..+.|.|.+|+||+.++-+++...+.+++.|...
T Consensus        29 ~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~   62 (408)
T d1c4oa1          29 RFVTLLGATGTGKTVTMAKVIEALGRPALVLAPN   62 (408)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CcEEEecCCCCHHHHHHHHHHHHhCCCEEEEeCC
Confidence            4579999999999999999999999998887543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.56  E-value=0.64  Score=37.02  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=24.2

Q ss_pred             eEEEE-cCCCchHHHHHHHHHHHh---CCceEEEcC
Q psy7809          91 GILLF-GPPGTGKTLLAKAVASQH---GSTFFNVLP  122 (343)
Q Consensus        91 ~vll~-Gp~GtGKT~la~~ia~~l---~~~~~~v~~  122 (343)
                      -|-++ +--|+||||++-.+|..+   |.++..+++
T Consensus         4 vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~   39 (237)
T d1g3qa_           4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG   39 (237)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            35566 558999999999998665   677777765

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.32  E-value=0.38  Score=40.19  Aligned_cols=25  Identities=36%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      +.-++|.|++|+|||+|+..++...
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999998763

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.31  E-value=0.23  Score=42.23  Aligned_cols=17  Identities=47%  Similarity=0.712  Sum_probs=14.9

Q ss_pred             ceEEEEcCCCchHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLA  106 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la  106 (343)
                      ...||.|.+|||||||.
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            45789999999999976

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.99  E-value=0.18  Score=43.47  Aligned_cols=18  Identities=28%  Similarity=0.479  Sum_probs=15.4

Q ss_pred             ceEEEEcCCCchHHHHHH
Q psy7809          90 RGILLFGPPGTGKTLLAK  107 (343)
Q Consensus        90 ~~vll~Gp~GtGKT~la~  107 (343)
                      ..++-||.+|+|||+..-
T Consensus        86 ~~i~aYGqTGSGKTyTm~  103 (330)
T d1ry6a_          86 CSCFAYGQTGSGKTYTML  103 (330)
T ss_dssp             EEEEEECCTTSSHHHHHH
T ss_pred             eEEEeeeccccccceeee
Confidence            468999999999998863

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.77  E-value=0.52  Score=37.86  Aligned_cols=25  Identities=44%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCchHHHHHHHHHHHh
Q psy7809          89 WRGILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      ..|.+|.=+.|+|||..+-+++..+
T Consensus        31 ~~g~iLaDe~GlGKT~~~i~~~~~~   55 (230)
T d1z63a1          31 GFGICLADDMGLGKTLQTIAVFSDA   55 (230)
T ss_dssp             TCCEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCChHHHHHHhhhhh
Confidence            4578888899999999988887654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.03  E-value=0.65  Score=38.08  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHHHh---CCceEEEcCC
Q psy7809          91 GILLFGPPGTGKTLLAKAVASQH---GSTFFNVLPS  123 (343)
Q Consensus        91 ~vll~Gp~GtGKT~la~~ia~~l---~~~~~~v~~~  123 (343)
                      .|.|+|-=|+||||++-.+|..+   |..+.-+++.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            46678988999999999888665   6677777664

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=81.79  E-value=0.19  Score=43.74  Aligned_cols=18  Identities=22%  Similarity=0.488  Sum_probs=15.2

Q ss_pred             CceEEEEcCCCchHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la  106 (343)
                      ...++-||++|+|||+..
T Consensus        80 n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          80 NGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             CEEEEEECSTTSSHHHHH
T ss_pred             ceeEEecccCCCCcceee
Confidence            346899999999999875

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.02  E-value=0.41  Score=40.72  Aligned_cols=18  Identities=44%  Similarity=0.602  Sum_probs=15.5

Q ss_pred             CceEEEEcCCCchHHHHH
Q psy7809          89 WRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        89 ~~~vll~Gp~GtGKT~la  106 (343)
                      ....||.|-+|||||||.
T Consensus        14 gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CCEEEEECCTTSSHHHHH
T ss_pred             CCEEEEEccCCCCcccce
Confidence            345789999999999988

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.59  E-value=0.5  Score=36.73  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCceEEEcC
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQHGSTFFNVLP  122 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l~~~~~~v~~  122 (343)
                      +|+.|+.++|||..|..++... .+++++-.
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~-~~~~YiAT   31 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA-PQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC-SSEEEEEC
T ss_pred             EEEECCCCccHHHHHHHHHhcC-CCcEEEEc
Confidence            6899999999999999998553 45555543

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=80.29  E-value=0.91  Score=38.96  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             CCCCcccc----cHHHHHHHHHHHhccccChHHHhccCCCCceEEEEcCCCchHHHHH
Q psy7809          53 VGWDDIAG----LDNVKQIFKETLLLPKLMPQLFKGILRPWRGILLFGPPGTGKTLLA  106 (343)
Q Consensus        53 ~~~~~l~G----~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la  106 (343)
                      ..|+.+.+    ++++-+.+...+...      +.   .....++-||.+|+|||+..
T Consensus        52 f~FD~vf~~~~~q~~vy~~v~~~v~~~------l~---G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          52 FKFDKIFDQQDTNVDVFKEVGQLVQSS------LD---GYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             EEESEEECTTCCHHHHHHHHHHHHGGG------GG---TCCEEEEEECCTTSSHHHHH
T ss_pred             eecCeEeCCCCCHHHHHHHhhhhhcch------hc---ccccceeeeeccCCcccccc
Confidence            56777766    455555544433221      11   23456888999999999876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.19  E-value=0.55  Score=37.72  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q psy7809          92 ILLFGPPGTGKTLLAKAVASQH  113 (343)
Q Consensus        92 vll~Gp~GtGKT~la~~ia~~l  113 (343)
                      |-+.|.+++|||||+.++....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhhc
Confidence            7788999999999999997654